RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8155
(617 letters)
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics,
PSI-2, protein S initiative, fatty acid synthesis; HET:
GOL; 2.00A {Rhodopseudomonas palustris}
Length = 509
Score = 182 bits (465), Expect = 6e-51
Identities = 75/330 (22%), Positives = 130/330 (39%), Gaps = 17/330 (5%)
Query: 203 VAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVA 262
++ D T+AD++R +A P++ FM + T + A + R+A+ L G+ GD VA
Sbjct: 1 MSLHDFTLADVYRRNAALFPDRTAFMVDGVRLTHRDYLARAERLASGLLRDGVHTGDRVA 60
Query: 263 LMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEI 322
++ +N E + L ++ +G I +N+ L + + + S + G + D V +
Sbjct: 61 ILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGV 120
Query: 323 STSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTS 382
SLG K ++ + + L S+ P S P G D + I+T+
Sbjct: 121 LPSLGGVKKAYAIGDGSGPFAP-------FKDLASDTPFSAP----EFGAADGFVIIHTA 169
Query: 383 GTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCC 442
G P+ A+IS ++ D LPL+H G + + G
Sbjct: 170 AVGGRPRGALISQGNLLIAQSSLVDAWRLTEADVNLGMLPLFHVTGLGLMLT-LQQAGGA 228
Query: 443 VVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQI 502
VI KF + D+ +K TV M +L P A +R + G P+
Sbjct: 229 SVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA-PAQLAS-LRAVTG-LDTPET 285
Query: 503 WSEFVDRFRIAQIGEFYGATE--GMAAILD 530
F A +G +E G++
Sbjct: 286 IERFEATCPNATFWATFGQSETSGLSTFAP 315
Score = 31.0 bits (71), Expect = 1.4
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 158 FLSGDLLVMDKWGYLYFKDR 177
+GD+ D GYL++ R
Sbjct: 377 HHTGDMGRFDADGYLFYAGR 396
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA
ligase; 1.84A {Burkholderia xenovorans}
Length = 529
Score = 178 bits (454), Expect = 3e-49
Identities = 65/360 (18%), Positives = 125/360 (34%), Gaps = 35/360 (9%)
Query: 207 DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 266
A K ++ + T ++E + R A+ G+ + + L++
Sbjct: 22 LFNFAAYLFRLNETRAGKTAYIDDTGSTTYGELEERARRFASALRTLGVHPEERILLVML 81
Query: 267 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSL 326
+ +LG GV+ + N L ++ + + A I L V + S
Sbjct: 82 DTVALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESA 141
Query: 327 GSNVKLFSWSPDTDSSSSPVPRSQAL----SPLLSEVPTSPPSLSYRVGVQDKLIYIYTS 382
+ S +S P + L +P T D ++Y+S
Sbjct: 142 EHDGCQLIVSQPRESEPRLAPLFEELIDAAAPAAKAAATGC---------DDIAFWLYSS 192
Query: 383 GTTGLPKAAVISNHRYYFLG--GAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFG 440
G+TG PK V + H + +G D ++ L+ G + L G
Sbjct: 193 GSTGKPKGTVHT-HANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNGLTFPLSVG 251
Query: 441 -CCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMC------RYLLSTPEKPEDKAHNVRLM 493
+++ ++ +A F+ + +++ TV +L +P P +R+
Sbjct: 252 ATAILMAERPTADAIFARLVEHRPTV------FYGVPTLYANMLVSPNLPARADVAIRIC 305
Query: 494 FGNG--LRPQIWSEFVDRFRIAQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSY 551
G L +I F F +I + G+TE M I N++ V + G + +P Y
Sbjct: 306 TSAGEALPREIGERFTAHFGC-EILDGIGSTE-MLHIFLSNRAGAVEYGTTG--RPVPGY 361
Score = 35.2 bits (82), Expect = 0.060
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 8/66 (12%)
Query: 115 CEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYF 174
G +G + P+ A + Y N ++ ++ F + SGD G +
Sbjct: 373 VPDGE-VGDLYIKGPSAA-VMYWNNREKSRATFLGEW------IRSGDKYCRLPNGCYVY 424
Query: 175 KDRTGD 180
R+ D
Sbjct: 425 AGRSDD 430
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase);
ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis}
PDB: 3t5c_A 3t5b_A
Length = 517
Score = 176 bits (450), Expect = 1e-48
Identities = 80/325 (24%), Positives = 130/325 (40%), Gaps = 30/325 (9%)
Query: 208 LTIADIFREHAVRSPNK--VIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALML 265
I + R+ A SP + + T Q+ A +NR A+ A G+ KGD VAL++
Sbjct: 16 KNIGWMLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLM 75
Query: 266 ENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTS 325
N EF CL+ G +KLG + IN L + ++ +G IYGA + I
Sbjct: 76 PNSVEFCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQ 135
Query: 326 LGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTT 385
+ DS L+ L P++ G D L +YTSGTT
Sbjct: 136 ADP-PGTVTDWIGADS----------LAERLRSAAADEPAV--ECGGDDNLFIMYTSGTT 182
Query: 386 GLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVI 445
G PK V ++ + + A I R +DR PLP++H A I + + G ++
Sbjct: 183 GHPKGVVHTHESVHSAASSWASTIDVRYRDRLLLPLPMFHVAALTTVIF-SAMRGVTLIS 241
Query: 446 RKKFSASNYFSDVCKYKCTVG-----QYIGEMCRYLLSTPEKPEDKAHNVRLMFGNG--L 498
+F A+ +S + + + +G + PE E A + R G +
Sbjct: 242 MPQFDATKVWSLIVEERVCIGGAVPAILNF-----MRQVPEFAELDAPDFRYFITGGAPM 296
Query: 499 RPQIWSEFVDRFRIAQIGEFYGATE 523
+ + + ++ + Y TE
Sbjct: 297 PEALIKIYAAKN--IEVVQGYALTE 319
Score = 30.6 bits (70), Expect = 1.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 158 FLSGDLLVMDKWGYLYFKDR 177
F +GD+ +D GYLY KDR
Sbjct: 392 FRTGDIGEIDDEGYLYIKDR 411
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase;
HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB:
4fut_A*
Length = 503
Score = 167 bits (425), Expect = 2e-45
Identities = 70/318 (22%), Positives = 119/318 (37%), Gaps = 24/318 (7%)
Query: 211 ADIFREHAVRSPNKV-IFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRP 269
+ P+K+ I + + ++ A + RVAN +A+GL+ GD VA E
Sbjct: 6 FARLFDKL-DDPHKLAIETAAGDKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSV 64
Query: 270 EFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSN 329
E + L+L + G + +N + L + I A + D + I+ +G
Sbjct: 65 EALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVG-- 122
Query: 330 VKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPK 389
+ + PD S L+ + + ++ G D +YTSGTTG K
Sbjct: 123 ATVETLGPDGRGS---------LTDAAAGASEAFATID--RGADDLAAILYTSGTTGRSK 171
Query: 390 AAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKF 449
A++S+ + F D LP+YHT G + L ++ KF
Sbjct: 172 GAMLSHDNLASNSLTLVDYWRFTPDDVLIHALPIYHTHGLFVASNVTLFARGSMIFLPKF 231
Query: 450 SASNYFSDVCKYKCTVGQYIG--EMCRYLLSTPEKPEDKAHNVRLMFGNG--LRPQIWSE 505
+ + TV +G LL +P ++ ++RL L E
Sbjct: 232 DPDKILDLMA--RATV--LMGVPTFYTRLLQSPRLTKETTGHMRLFISGSAPLLADTHRE 287
Query: 506 FVDRFRIAQIGEFYGATE 523
+ + A + E YG TE
Sbjct: 288 WSAKTGHA-VLERYGMTE 304
Score = 28.7 bits (65), Expect = 6.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 158 FLSGDLLVMDKWGYLYFKDRTGD 180
F++GDL +D+ GY++ R D
Sbjct: 378 FITGDLGKIDERGYVHILGRGKD 400
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein
synthetase, PSI-2, protein structure initiative; 2.30A
{Staphylococcus aureus subsp}
Length = 501
Score = 166 bits (422), Expect = 5e-45
Identities = 51/320 (15%), Positives = 116/320 (36%), Gaps = 15/320 (4%)
Query: 208 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLEN 267
+++ + A ++ + + +T Q + ++ +A + V L ++N
Sbjct: 1 MSLDFWLYKQAQQNGHHIAITDGQESYTYQNLYCEASLLAKRL---KAYQQSRVGLYIDN 57
Query: 268 RPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLG 327
+ + L + A+IN L N + + + V L +I +
Sbjct: 58 SIQSIILIHACWLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSLDD 117
Query: 328 SNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGL 387
+ + ++ + + + + L+ + D ++TSGTTG
Sbjct: 118 IEFAGRDITTNGLLDNTMGIQYDTSNETVVPKESPSNILNTSFNLDDIASIMFTSGTTGP 177
Query: 388 PKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRK 447
KA + +Y +GF + + LP+YH +G ++ + A+I G V I
Sbjct: 178 QKAVPQTFRNHYASAIGCKESLGFDRDTNWLSVLPIYHISGLSVLLR-AVIEGFTVRIVD 236
Query: 448 KFSASNYFSDVCKYKCTVGQYIG--EMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIW 503
KF+A + + + T + +L+ ++ + +N++ + G L +
Sbjct: 237 KFNAEQILTMIKNERITH--ISLVPQTLNWLM---QQGLHEPYNLQKILLGGAKLSATMI 291
Query: 504 SEFVDRFRIAQIGEFYGATE 523
+ I +G TE
Sbjct: 292 ETALQYN--LPIYNSFGMTE 309
Score = 31.4 bits (72), Expect = 0.98
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 158 FLSGDLLVMDKWGYLYFKDRTGD 180
F +GD+ +D GY+ DR D
Sbjct: 377 FNTGDIAEIDHEGYVMIYDRRKD 399
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase
domain alternation confo change; 2.00A {Alcaligenes SP}
SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X*
2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Length = 504
Score = 161 bits (410), Expect = 3e-43
Identities = 67/329 (20%), Positives = 114/329 (34%), Gaps = 37/329 (11%)
Query: 209 TIADIFREHAVRSPNK--VIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 266
T+ ++ R A R+P+ + T ++ A VA A GL+ VA++
Sbjct: 3 TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62
Query: 267 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSL 326
N + V L L +LG + AL+N L+ L I ++A + A +
Sbjct: 63 NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS 122
Query: 327 GSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYI-YTSGTT 385
G+ + S P + + P + +I YTSGTT
Sbjct: 123 GARIIFLGDLVRDGEPYSY-------GPPIEDPQREP----------AQPAFIFYTSGTT 165
Query: 386 GLPKAAVISNHRYYFLGGAIAYQIGFRT--KDRFYTPLPLYHTAGGAMCIGQALIFGCCV 443
GLPKAA+I ++ Q+G R + +PLYH G + AL
Sbjct: 166 GLPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTY 225
Query: 444 VIRKKFSASNYFSDVCKYKCTVG-----QYIGEMCRYLLSTPEKPEDKA--HNVRLMFGN 496
V+ ++F + V + + T L + ++R +
Sbjct: 226 VVVEEFRPVDALQLVQQEQVTSLFATPTHLDA-----LAAAAAHAGSSLKLDSLRHVTFA 280
Query: 497 G--LRPQIWSEFVDRFRIAQIGEFYGATE 523
G + + ++ YG TE
Sbjct: 281 GATMPDAVLETVHQHLPGEKV-NIYGTTE 308
Score = 30.6 bits (70), Expect = 1.8
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 158 FLSGDLLVMDKWGYLYFKDRTGD 180
+ + D+ V G + R D
Sbjct: 381 YRTSDVAVWTPEGTVRILGRVDD 403
>3o83_A Peptide arylation enzyme; ligase, adenylation of
2,3-dihydroxybenzoate and transfer to pantetheine
cofactor of BASF; HET: IXN; 1.90A {Acinetobacter
baumannii} PDB: 3o82_A* 3o84_A*
Length = 544
Score = 158 bits (403), Expect = 4e-42
Identities = 58/346 (16%), Positives = 120/346 (34%), Gaps = 33/346 (9%)
Query: 198 WAARRVAQ-------KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFF 250
W+ R D + I P+ + + + + +++ S +A
Sbjct: 13 WSPERAQHYRNKGYWIDQPLTRILTVGVQSHPHSLAIICGERQLSYIELDRLSTNLATRL 72
Query: 251 LAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI 310
+GL KGD+ + L N EF ++ L K GV+ ++ RQ L I I
Sbjct: 73 AEKGLGKGDTALVQLPNVAEFYIVFFALLKAGVVVLNALYSHRQYELNAFIKQIQPKLLI 132
Query: 311 Y-----GAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPS 365
+ + S ++ + + + + + ++P
Sbjct: 133 GSRQHEVFSNNQFIDSLHDVNLS-PEIILMLNHQATDFGLLDWIETPAETFVDFSSTPA- 190
Query: 366 LSYRVGVQDKLIYI-YTSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLY 424
D++ + + G+TG PK +++ Y + A A G + R LP
Sbjct: 191 --------DEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEICGLNSNTRLLCALPAP 242
Query: 425 HTAG----GAMCIGQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTP 480
H GA+ L G CVV+ N FS + +++ + + L
Sbjct: 243 HNFMLSSPGALG---VLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKA 299
Query: 481 EKPEDKAHNVRL--MFGNGLRPQIWSEFVDRFRIAQIGEFYGATEG 524
+ +D+ +++L + G + + + ++ + +G EG
Sbjct: 300 AQYKDQIQSLKLLQVGGASFPESLARQVPEVLN-CKLQQVFGMAEG 344
Score = 31.0 bits (71), Expect = 1.4
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 158 FLSGDLLVMDKWGYLYFKDRTGD 180
+ SGDL+ G L R D
Sbjct: 418 YYSGDLVQRTPDGNLRVVGRIKD 440
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide
synthetase, antibiotic biosynthesis, siderophore
formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP:
e.23.1.1 PDB: 1md9_A* 1mdf_A
Length = 539
Score = 154 bits (392), Expect = 1e-40
Identities = 49/265 (18%), Positives = 100/265 (37%), Gaps = 19/265 (7%)
Query: 207 DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 266
T D+ R+ A + +++ NT W+ ++++ ++R+A F G+++ D V + L
Sbjct: 24 GETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLP 83
Query: 267 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIY-----GAELTDAVQE 321
N EF + L +LG + + R + + + A +A+I G + ++
Sbjct: 84 NIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQ 143
Query: 322 ISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYT 381
+ + L + + + L ++ T P L V D +
Sbjct: 144 VQSKLPTLKNIIVAGEAEEFLP------------LEDLHTEPVKLP-EVKSSDVAFLQLS 190
Query: 382 SGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMC-IGQALIFG 440
G+TGL K ++ Y + + LP+ H + + L G
Sbjct: 191 GGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAG 250
Query: 441 CCVVIRKKFSASNYFSDVCKYKCTV 465
VV+ S + F + + K T+
Sbjct: 251 GRVVLSPSPSPDDAFPLIEREKVTI 275
Score = 31.0 bits (71), Expect = 1.4
Identities = 6/23 (26%), Positives = 14/23 (60%)
Query: 158 FLSGDLLVMDKWGYLYFKDRTGD 180
+ +GD++ + + GY+ + R D
Sbjct: 409 YRTGDIVRLTRDGYIVVEGRAKD 431
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate
synthetase, isochroismatase...; adenylate-forming
enzymes, ANL superfamily; HET: SVS PNS; 3.10A
{Escherichia coli}
Length = 617
Score = 154 bits (391), Expect = 3e-40
Identities = 50/267 (18%), Positives = 98/267 (36%), Gaps = 23/267 (8%)
Query: 207 DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 266
DL + DI HA + + + + + + +++ ++ +A QG+K G++ + L
Sbjct: 26 DLPLTDILTRHA--ASDSIAVIDGERQLSYRELNQAADNLACSLRRQGIKPGETALVQLG 83
Query: 267 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAEL-----TDAVQE 321
N E + L KLGV L + +++ L + + I + D +
Sbjct: 84 NVAELYITFFALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNT 143
Query: 322 ISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYI-Y 380
T S + + + + A + P+ D++ Y
Sbjct: 144 FVTEHSSIRVVQLLNDSGEHNLQDAINHPA--EDFTATPSPA----------DEVAYFQL 191
Query: 381 TSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQ--ALI 438
+ GTTG PK +++ YY+ F + R+ +P H G +
Sbjct: 192 SGGTTGTPKLIPRTHNDYYYSVRRSVEICQFTQQTRYLCAIPAAHNY-AMSSPGSLGVFL 250
Query: 439 FGCCVVIRKKFSASNYFSDVCKYKCTV 465
G VV+ SA+ F + K++ V
Sbjct: 251 AGGTVVLAADPSATLCFPLIEKHQVNV 277
Score = 29.9 bits (68), Expect = 2.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 158 FLSGDLLVMDKWGYLYFKDRTGD 180
+ SGDL+ +D GY+ + R D
Sbjct: 413 YCSGDLISIDPEGYITVQGREKD 435
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL
EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Length = 536
Score = 145 bits (369), Expect = 1e-37
Identities = 70/333 (21%), Positives = 124/333 (37%), Gaps = 33/333 (9%)
Query: 206 KDLTIADIFREHAVRSPNKV--IFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVAL 263
K+L + E+ +K I +T VE + RVA+ G+++GD + L
Sbjct: 20 KNLPLHSYVLENLSNHSSKPCLINGANGDVYTYADVELTARRVASGLNKIGIQQGDVIML 79
Query: 264 MLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEIS 323
L + PEFV +LG S G I N L + I A + V++ +
Sbjct: 80 FLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFA 139
Query: 324 TSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYI-YTS 382
V S S L P + D ++ + Y+S
Sbjct: 140 RESDVKVMCV---------DSAPDGCLHFSELTQADENEAPQVDIS---PDDVVALPYSS 187
Query: 383 GTTGLPKAAVISNHRYYF-----LGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQAL 437
GTTGLPK +++ H+ + F ++D LP++H + L
Sbjct: 188 GTTGLPKGVMLT-HKGLITSVAQQVDGDNPNLYFHSEDVILCVLPMFHIYALNSIMLCGL 246
Query: 438 IFGCCVVIRKKFSASNYFSDVCKYKCTVGQ-----YIGEMCRYLLSTPEKPEDKAHNVRL 492
G ++I KF + + KYK ++ + + +P+ + ++R+
Sbjct: 247 RVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMS-----IAKSPDLDKHDLSSLRM 301
Query: 493 MFGNG--LRPQIWSEFVDRFRIAQIGEFYGATE 523
+ G L ++ +F A++G+ YG TE
Sbjct: 302 IKSGGAPLGKELEDTVRAKFPQARLGQGYGMTE 334
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel
adenylate-forming EN fold; HET: MCA AMP; 1.43A
{Streptomyces coelicolor} PDB: 3nyr_A*
Length = 505
Score = 143 bits (363), Expect = 6e-37
Identities = 58/327 (17%), Positives = 91/327 (27%), Gaps = 45/327 (13%)
Query: 209 TIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENR 268
+ ++ F T ++ A + A + VA+
Sbjct: 24 LFPALSPAPTGAPADRPALRFGERSLTYAELAAAAGATAG-----RIGGAGRVAVWATPA 78
Query: 269 PEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGS 328
E + GV +N L H ++ + S +
Sbjct: 79 METGVAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVL------------------ 120
Query: 329 NVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLP 388
+ P AL + +V D + +YTSGTTG P
Sbjct: 121 ----------APPDAELPPALGALERVDVDVRARGAVPEDGADDGDPALVVYTSGTTGPP 170
Query: 389 KAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKK 448
K AVI A+A + +D LPL+H G + I L G V +
Sbjct: 171 KGAVIPRRALATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGR 230
Query: 449 FSASNYFSDVCKYKCTVGQYIG--EMCRYLLSTPEKPEDKAH---NVRLMFGNG--LRPQ 501
FS ++ T+ G M + T + A RL+ L
Sbjct: 231 FSTEGAAREL-NDGATM--LFGVPTMYHRIAETLPADPELAKALAGARLLVSGSAALPVH 287
Query: 502 IWSEFVDRFRIAQIGEFYGATE-GMAA 527
++ E YG TE M
Sbjct: 288 DHERIAAATG-RRVIERYGMTETLMNT 313
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase,
photoprotein, luminescence, aspulvinone, natural product
extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A
1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A
Length = 550
Score = 141 bits (357), Expect = 5e-36
Identities = 62/332 (18%), Positives = 111/332 (33%), Gaps = 21/332 (6%)
Query: 207 DLTIADIFREHAVR---SPNKVIFMFENT--EWTAQQVEAYSNRVANFFLAQGLKKGDSV 261
D T + + R P + F + T + S R+A GL +
Sbjct: 19 DGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRI 78
Query: 262 ALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQE 321
+ EN +F LG +GV A N + LL+ +NI+ + + +
Sbjct: 79 VVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILN 138
Query: 322 ISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGV---QDKLIY 378
+ L K+ DS + + + S +P + +
Sbjct: 139 VQKKLPIIQKIII----MDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIAL 194
Query: 379 I-YTSGTTGLPKAAVISNHR----YYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCI 433
I +SG+TGLPK + HR + + + +P +H G +
Sbjct: 195 IMNSSGSTGLPKGVALP-HRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTL 253
Query: 434 GQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLM 493
G LI G VV+ +F + + YK + + + + + N+ +
Sbjct: 254 G-YLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEI 312
Query: 494 FGNG--LRPQIWSEFVDRFRIAQIGEFYGATE 523
G L ++ RF + I + YG TE
Sbjct: 313 ASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTE 344
Score = 28.3 bits (64), Expect = 9.5
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 5/44 (11%)
Query: 134 LGYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYFKDR 177
GYVN ++ + D SGD+ D+ + + DR
Sbjct: 399 SGYVNNPEATNALIDK-----DGWLHSGDIAYWDEDEHFFIVDR 437
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel,
alpha+beta, riken structural genomics/proteomics
initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata}
PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Length = 548
Score = 136 bits (346), Expect = 2e-34
Identities = 63/332 (18%), Positives = 112/332 (33%), Gaps = 22/332 (6%)
Query: 207 DLTIADIFREHAVRSPN--KVIFMFENT--EWTAQQVEAYSNRVANFFLAQGLKKGDSVA 262
+ + R++ R + F T +++ + S + GL +A
Sbjct: 22 EGSAGTQLRKYMERYAKLGAIAFTNAVTGVDYSYAEYLEKSCCLGKALQNYGLVVDGRIA 81
Query: 263 LMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEI 322
L EN EF + +GV A N L+H + I+ + + D V +
Sbjct: 82 LCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITV 141
Query: 323 STSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGV----QDKLIY 378
++ + + S Q L + S V ++++
Sbjct: 142 QKTVTTIKTIV-----ILDSKVDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVAL 196
Query: 379 I-YTSGTTGLPKAAVISNHRYY----FLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCI 433
I +SG+TGLPK ++ H Y T +P +H G +
Sbjct: 197 IMNSSGSTGLPKGVQLT-HENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTL 255
Query: 434 GQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLM 493
G LI G VV+ KF + + YKCT + + L + + N+ +
Sbjct: 256 G-YLICGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEI 314
Query: 494 FGNG--LRPQIWSEFVDRFRIAQIGEFYGATE 523
G L ++ RF + + + YG TE
Sbjct: 315 ASGGAPLSKEVGEAVARRFNLPGVRQGYGLTE 346
Score = 28.3 bits (64), Expect = 7.6
Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 134 LGYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYFKDR 177
GYVN ++ K++ + + +GD+ D+ + + DR
Sbjct: 401 KGYVNNPEATKELIDE-----EGWLHTGDIGYYDEEKHFFIVDR 439
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain
acyl-COA synthetase, xenobiotic/medium-chain FA COA
ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A
3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Length = 570
Score = 134 bits (339), Expect = 2e-33
Identities = 77/386 (19%), Positives = 131/386 (33%), Gaps = 50/386 (12%)
Query: 192 RYLRFLWAARRVAQKDLTIA-DIFREHAV-----RSPNKVIFMFEN-----TEWTAQQVE 240
+ + W + V K A D+ A + P + N W +++
Sbjct: 22 QSMSLQWGHQEVPAK-FNFASDVLDHWADMEKAGKRPPSPALWWVNGKGKELMWNFRELS 80
Query: 241 AYSNRVANFFL-AQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLH 299
S + AN A GL++GD VA++L PE+ + LG + G+I ++ +L+
Sbjct: 81 ENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTIQMKSTDILY 140
Query: 300 CINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEV 359
+ ++ A + G E+ V +++ S S LL+E
Sbjct: 141 RLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEK------SCDGWLNFKKLLNEA 194
Query: 360 PTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHRYYFLGGAIA-YQIGFRTKDRFY 418
T+ + G Q+ +TSGT+GLPK A S + L + G + D +
Sbjct: 195 STTHHCV--ETGSQEASAIYFTSGTSGLPKMAEHS-YSSLGLKAKMDAGWTGLQASDIMW 251
Query: 419 TPLPL---YHTAGGAMCIGQALIFGCCVVIRK--KFSASNYFSDVCKYKCTVGQYIGEMC 473
T + M G C + KF + Y M
Sbjct: 252 TISDTGWILNILCSLME---PWALGACTFVHLLPKFDPLVILKTLSSYPIKS------MM 302
Query: 474 ------RYLLSTPEKPEDKAHNVRLMFGNG--LRPQIWSEFVDRFRIAQIGEFYGATEGM 525
R LL H ++ G L P+ + + + I E YG TE
Sbjct: 303 GAPIVYRMLLQQDLSSYKFPH-LQNCVTVGESLLPETLENWRAQTGL-DIRESYGQTE-T 359
Query: 526 AAILDINKSLDVSAVSEGIKKALPSY 551
++K++ + G A Y
Sbjct: 360 GLTCMVSKTMKIKPGYMG--TAASCY 383
Score = 34.5 bits (80), Expect = 0.10
Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 11/70 (15%)
Query: 115 CEPGVFIGKIV----PSNPARAYLGYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWG 170
PG G I P P + GYV+ D F +L GD + D+ G
Sbjct: 395 LPPGT-EGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDF------WLLGDRGIKDEDG 447
Query: 171 YLYFKDRTGD 180
Y F R D
Sbjct: 448 YFQFMGRADD 457
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure
initiative, PSI-II, NYSGXRC, 11193J, structural
genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Length = 549
Score = 133 bits (338), Expect = 2e-33
Identities = 55/340 (16%), Positives = 124/340 (36%), Gaps = 41/340 (12%)
Query: 207 DLTIADIFREHAVRSPNKVIFMFENT--------EWTAQQVEAYSNRVANFFLAQGLKKG 258
+++AD A + K + ++ + ++A+ +G++KG
Sbjct: 18 KISLADRIDAAAEKFGEKTAIISAEPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKG 77
Query: 259 DSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDA 318
+ V + + N ++V L ++ IN + L H +N + + + + L +
Sbjct: 78 EHVGVCIPNSIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYEN 137
Query: 319 VQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIY 378
+ + G ++F + +S LS ++ ++ V ++ +
Sbjct: 138 FKPVLEKTGV-ERVFVVGGEVNS----------LSEVMDSGSEDFENVK--VNPEEDVAL 184
Query: 379 I-YTSGTTGLPKAAVISNHRYYFLGGAIAYQI----GFRTKDRFYTPLPLYHTAGGAMCI 433
I YT GTTG+PK +++ H A A Q+ G D +P++H + +
Sbjct: 185 IPYTGGTTGMPKGVMLT-HFNLA---ANALQLAVATGLSHMDTIVGCMPMFH-SAEFGLV 239
Query: 434 GQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAH--NVR 491
+ G V+ F+ ++ KYK T + L++T E ++
Sbjct: 240 NLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKTYDWSYLK 299
Query: 492 LMFGNG--LRPQIWSEFVDRF------RIAQIGEFYGATE 523
+ + P + + + + + +G TE
Sbjct: 300 VFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTE 339
Score = 28.7 bits (65), Expect = 6.8
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Query: 135 GYVN-EKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYFKDR 177
GY EK++ + + D E G F +GD+ +D+ G+L+F+DR
Sbjct: 396 GYWKREKENQECWWYD--EKGRKFFRTGDVGFIDEEGFLHFQDR 437
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 135 bits (341), Expect = 3e-33
Identities = 61/327 (18%), Positives = 114/327 (34%), Gaps = 13/327 (3%)
Query: 206 KDLTIADIFREHAVRSPNKV--IFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVAL 263
L++ D ++ K I +T V S ++A F G+ + D V L
Sbjct: 59 NHLSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISRQIAANFHKLGVNQNDVVML 118
Query: 264 MLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEIS 323
+L N PEFV +L S G N + + I A D ++ +
Sbjct: 119 LLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQ 178
Query: 324 TSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSG 383
G + + + ++ + D + Y+SG
Sbjct: 179 NDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVIDS---VEISPDDVVALPYSSG 235
Query: 384 TTGLPKAAVISNHR-----YYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALI 438
TTGLPK +++ H+ + F + D LP++H + L
Sbjct: 236 TTGLPKGVMLT-HKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHIYALNSIMLCGLR 294
Query: 439 FGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNG- 497
G ++I KF + + + K TV + + + + E + ++R++
Sbjct: 295 VGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAA 354
Query: 498 -LRPQIWSEFVDRFRIAQIGEFYGATE 523
L ++ +F A++G+ YG TE
Sbjct: 355 PLGKELEDAVNAKFPNAKLGQGYGMTE 381
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase,
ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina
acetivorans}
Length = 580
Score = 116 bits (293), Expect = 2e-27
Identities = 74/339 (21%), Positives = 126/339 (37%), Gaps = 48/339 (14%)
Query: 212 DIFREHAVRSPNKVIFMFEN-----TEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 266
D+ +A SP K+ ++ + +T + ++ YS++ ANFF+ G+ KGD V L L+
Sbjct: 60 DVVDVYARDSPEKLAMIWCDDYGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLK 119
Query: 267 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI--YGAELTDAVQEIST 324
+R +F LGL KLG I H L+ +++ I AG+ + ++ + V E
Sbjct: 120 SRYDFWYCMLGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHA 179
Query: 325 SLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPT--SPPSLSYRVGVQDKLIYIYTS 382
G + L E P+ +D + ++S
Sbjct: 180 ECGDIPLKK-----AKVGGDVLEGWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSS 234
Query: 383 GTTGLPKAAVISNHRY--YFLGGAIAYQIGFRTKDRFYTPLPLYHTA-----GGAM-CIG 434
GT G PK + Y + A Y YT A +
Sbjct: 235 GTAGFPKMVEHD-NTYPLGHILTA-KYWQNVEDDGLHYT------VADSGWGKCVWGKLY 286
Query: 435 QALIFGCCVVIRK--KFSASNYFSDVCKYKCTVGQYIGEMC------RYLLSTPEKPEDK 486
I GC V + +F A N KY T C R+L+ +
Sbjct: 287 GQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTT------FCAPPTIYRFLIKEDLSHYNF 340
Query: 487 AHNVRLMFGNG--LRPQIWSEFVDRFRIAQIGEFYGATE 523
+ ++ G L P++++ F++ I ++ E +G TE
Sbjct: 341 ST-LKYAVVAGEPLNPEVFNRFLEFTGI-KLMEGFGQTE 377
Score = 29.5 bits (67), Expect = 4.0
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
Query: 115 CEPGVFIGKIV----PSNPARAYLGYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWG 170
CE G G+IV P ++ Y + + ++ + D + + +GD+ MD+ G
Sbjct: 414 CEVGE-EGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGY------YHTGDMAWMDEDG 466
Query: 171 YLYFKDRTGD 180
YL+F R D
Sbjct: 467 YLWFVGRADD 476
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl
adenylate, structural genom 2, protein structure
initiative; HET: 1ZZ; 1.85A {Legionella pneumophila
subsp} PDB: 3lnv_A*
Length = 590
Score = 92.0 bits (229), Expect = 1e-19
Identities = 52/245 (21%), Positives = 91/245 (37%), Gaps = 25/245 (10%)
Query: 209 TIADIFREHAVRSPNKVIFMF----ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALM 264
++ D+ R A+ SPNK F T +Q++ ++ +A A+G K GD V L+
Sbjct: 12 SLVDVVRLRALHSPNKKSCTFLNKELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLL 71
Query: 265 LENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVS--AFIYGAELTDA--VQ 320
+ +LG G I I ++ L I S + L A ++
Sbjct: 72 FAPGLPLIQAFLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIV----LMIADHIK 127
Query: 321 EISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIY 380
+ + + F P S + RS + P +++ +Q Y
Sbjct: 128 KFTADELNTNPKFLKIPAIALESIELNRSSSWQP----TSIKSNDIAF---LQ------Y 174
Query: 381 TSGTTGLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFG 440
TSG+T PK ++S+H I + ++ LP +H G CI + G
Sbjct: 175 TSGSTMHPKGVMVSHHNLLDNLNKIFTSFHMNDETIIFSWLPPHHDMGLIGCILTPIYGG 234
Query: 441 CCVVI 445
++
Sbjct: 235 IQAIM 239
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme
family,, structural genomics, PSI-2, protein structure
initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB:
3pbk_A*
Length = 576
Score = 90.0 bits (224), Expect = 4e-19
Identities = 51/248 (20%), Positives = 78/248 (31%), Gaps = 31/248 (12%)
Query: 209 TIADIFREHAVRSPNKVIFMFENTEW---TAQQVEAYSNRVANFFLAQGLKKGDSVALML 265
T+ D A+ S + Q ++A + A L+ LKKGD VAL+
Sbjct: 22 TLVDALDYAALSSAGMNFYDRRCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIA 81
Query: 266 ENRPEFVCLWLGLSKLGVI-------TALINHNLRQNSLLHCINIAGVSAFIYGAELTDA 318
E EFV + G++ + + L + +A I G E
Sbjct: 82 ETSSEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPL 141
Query: 319 VQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIY 378
V + P LS + R D
Sbjct: 142 VNAATHDN--------------------PELHVLSHAWFKALPEADVALQRPVPNDIAYL 181
Query: 379 IYTSGTTGLPKAAVISNHRYYFLGGAIAYQ-IGFRTKDRFYTPLPLYHTAGGAMCIGQAL 437
YTSG+T P+ +I++ AI++ I R DR + LP YH G + +
Sbjct: 182 QYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPGDRCVSWLPFYHDMGLVGFLLTPV 241
Query: 438 IFGCCVVI 445
V
Sbjct: 242 ATQLSVDY 249
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase
like fold, AMP-binding; 2.05A {Mycobacterium
tuberculosis} PDB: 3e53_A
Length = 480
Score = 85.1 bits (211), Expect = 1e-17
Identities = 46/255 (18%), Positives = 75/255 (29%), Gaps = 36/255 (14%)
Query: 209 TIADIFREHAVRSPNKVIFMF---------ENTEWTAQQVEAYSNRVANFFLAQGLKKGD 259
++ R A P+ F F T Q+ + VA G GD
Sbjct: 25 SLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCG-STGD 83
Query: 260 SVALMLENRPEFVCLWLGLSKLGVI---TALINHNLRQNSLLHCINIAGVSAFIYGAELT 316
V + E+V +LG + G I ++ + ++ + A + +
Sbjct: 84 RVVISAPQGLEYVVAFLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAV 143
Query: 317 DAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKL 376
D V + D +P + PS +Y +Q
Sbjct: 144 DDVVQHVARRPGESPPSIIEVDLLDLDAPNG--------YTFKEDEYPSTAY---LQ--- 189
Query: 377 IYIYTSGTTGLPKAAVIS------NHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGA 430
YTSG+T P V+S N G + LP YH G
Sbjct: 190 ---YTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYHDMGLV 246
Query: 431 MCIGQALIFGCCVVI 445
+ I ++ G V+
Sbjct: 247 IGICAPILGGYPAVL 261
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural
genomics, DLTA, ATP-binding, cytoplasm,
nucleotide-binding; 2.41A {Streptococcus pyogenes
serotype M6} PDB: 3lgx_A*
Length = 521
Score = 70.6 bits (174), Expect = 5e-13
Identities = 46/331 (13%), Positives = 92/331 (27%), Gaps = 50/331 (15%)
Query: 209 TIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENR 268
+ D + A + ++ T Q++ S+ +A F + L V +
Sbjct: 5 DMIDSIEQFAQTQADFPVYDCLGERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQT 64
Query: 269 PEFVCLWLGLSKLGVITA----L-INHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEIS 323
+ + + + + + ++ + +L I IA S I E ++ IS
Sbjct: 65 YDML---ATF--VALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTIEGIS 119
Query: 324 TSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSG 383
+ + + Y + I+TSG
Sbjct: 120 LVS---LSEIESAKLAEMPYERTH------------SVKGDDNYY-I--------IFTSG 155
Query: 384 TTGLPKAAVISNHRY---YFLGGAIAYQIGFRTKDRFYTPLPLYHTAG---GAMCIGQAL 437
TTG PK IS H + + + M L
Sbjct: 156 TTGQPKGVQIS-HDNLLSFTNWMIEDAAFDVPKQPQM----LAQPPYSFDLSVMYWAPTL 210
Query: 438 IFGCCVVIRKKFSASN--YFSD-VCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF 494
G + K ++ + + + + + + + K + +
Sbjct: 211 ALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDDFCQAKMPALTHFY 270
Query: 495 --GNGLRPQIWSEFVDRFRIAQIGEFYGATE 523
G L + +RF A+I YG TE
Sbjct: 271 FDGEELTVSTARKLFERFPSAKIINAYGPTE 301
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming
domain, adenylation, D-alanine protein ligase, ATP
complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A*
3dhv_A*
Length = 512
Score = 67.1 bits (165), Expect = 6e-12
Identities = 53/345 (15%), Positives = 107/345 (31%), Gaps = 68/345 (19%)
Query: 208 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLEN 267
+ + + + A +P++ F++ + + T +Q++ S+ +A++ ++ + +
Sbjct: 1 MKLLEQIEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHM 60
Query: 268 RPEFVCLWLGLSKLGVITA------L--------INHNLRQNSLLHCINIAGVSAFIYGA 313
+PE + + LG + A + + +G
Sbjct: 61 QPEMI---INF--LGCVKAGHAYIPVDLSIPADRVQRIAEN---------SGAKLL---- 102
Query: 314 ELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQ 373
L+ ++ V D + +P E Y
Sbjct: 103 -LSATAVTVTDLPVRIVSE-----DNLKDIFFTHKGNTPNP---EHAVKGDENFY----- 148
Query: 374 DKLIYIYTSGTTGLPKAAVISNHR--YYFLGGAIAYQIGFRTKDRFYTPLPLYHTAG--- 428
+I YTSG+TG PK I+ + F A+ +T F
Sbjct: 149 --II--YTSGSTGNPKGVQIT-YNCLVSFTKWAVED-FNLQTGQVF----LNQAPFSFDL 198
Query: 429 GAMCIGQALIFGCCVVIRKKFSASN--YFSD-VCKYKCTVGQYIGEMCRYLLSTPEKPED 485
M I +L+ G + K + + + V L E
Sbjct: 199 SVMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSES 258
Query: 486 KAHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAI 528
N++ G L ++ + ++RF A I YG TE A +
Sbjct: 259 MLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTE--ATV 301
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
ligase phosphoprotein, TER module, phosphopantetheine;
2.60A {Bacillus subtilis}
Length = 1304
Score = 67.7 bits (166), Expect = 8e-12
Identities = 37/213 (17%), Positives = 69/213 (32%), Gaps = 49/213 (23%)
Query: 198 WAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKK 257
A + + F+E +P+ + + ++++ +NR+A G K
Sbjct: 454 LNPPAQAHETKPLTYWFKEAVNANPDAPALTYSGQTLSYRELDEEANRIARRLQKHGAGK 513
Query: 258 GDSVALMLENRPEFVCLWLGLSKLG---V----------ITALINHNLRQNSLLHCINIA 304
G VAL + E V LG+ K G + I+ ++ +
Sbjct: 514 GSVVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLAD-------------S 560
Query: 305 GVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPP 364
+ + E+ + E+ + LF + P P
Sbjct: 561 AAACLLTHQEMKEQAAELPYTG---TTLFIDDQTRFEEQASDP----------ATAIDPN 607
Query: 365 SLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHR 397
+Y + +YTSGTTG PK + + H
Sbjct: 608 DPAY-I--------MYTSGTTGKPKGNITT-HA 630
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA,
non-ribosomal peptide synthetase, NRPS, adenylation
domain, D-alanylation; HET: AMP; 2.28A {Bacillus
subtilis} PDB: 3e7x_A*
Length = 511
Score = 64.4 bits (158), Expect = 5e-11
Identities = 53/344 (15%), Positives = 99/344 (28%), Gaps = 67/344 (19%)
Query: 208 LTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDS-VALMLE 266
+ + + HA P F + T Q++ S+R A + + S + +
Sbjct: 1 MKLLHAIQTHAETYPQTDAFRSQGQSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGH 60
Query: 267 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI-----YGAE-----LT 316
P + + LG ++ AG +I +E +
Sbjct: 61 MEPHMI---VSF--LGS--------VK----------AG-HPYIPVDLSIPSERIAKIIE 96
Query: 317 DA-VQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDK 375
+ + + + G ++ T S+ + + Y
Sbjct: 97 SSGAELLIHAAGLSIDAVGQQIQTVSAEELLENEGGSVSQ--DQWVKEHETFY------- 147
Query: 376 LIYIYTSGTTGLPKAAVISNHRY---YFLGGAIAYQIGFRTKDRFYTPLPLYHTAG---G 429
+IY TSG+TG PK IS + + + F
Sbjct: 148 IIY--TSGSTGNPKGVQIS-AANLQSFTDWICADFPVS--GGKIF----LNQAPFSFDLS 198
Query: 430 AMCIGQALIFGCCVVIRKKFSASN--YFSD-VCKYKCTVGQYIGEMCRYLLSTPEKPEDK 486
M + L G + K + + + + K V + L P +D
Sbjct: 199 VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDL 258
Query: 487 AHNVRLMF--GNGLRPQIWSEFVDRFRIAQIGEFYGATEGMAAI 528
+ G L + ++RF A+I YG TE A +
Sbjct: 259 LPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTE--ATV 300
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics,
riken structural genomics/proteomics initiative, RSGI;
HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1
PDB: 1ult_A* 1v26_A*
Length = 541
Score = 63.7 bits (156), Expect = 9e-11
Identities = 48/233 (20%), Positives = 76/233 (32%), Gaps = 35/233 (15%)
Query: 208 LTIADIFREHAVRS-PNKVI----FMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVA 262
L + D E A K + E T +V + R+ A G+ GD VA
Sbjct: 18 LNLWDFL-ERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVA 76
Query: 263 LMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEI 322
+ N + + + +G + N L + + +N A ++ L V+ I
Sbjct: 77 TLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAI 136
Query: 323 STSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPP-------SLSYRVGVQDK 375
L V+ F + A L E ++
Sbjct: 137 RGEL-KTVQHFVVMDEKA-----PEGYLAYEEALGEEADPVRVPERAACGMA-------- 182
Query: 376 LIYIYTSGTTGLPKAAVISNHRYYFL---GGAIAYQIGFRTKDRFYTPLPLYH 425
YT+GTTGLPK V S HR L ++ KD +P++H
Sbjct: 183 ----YTTGTTGLPKGVVYS-HRALVLHSLAASLVDGTALSEKDVVLPVVPMFH 230
Score = 32.5 bits (75), Expect = 0.42
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 135 GYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGD 180
GY +++ + T D F +GD+ V D+ GY+ KDR D
Sbjct: 396 GYYGNEEATRSALTP-----DGFFRTGDIAVWDEEGYVEIKDRLKD 436
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.8 bits (147), Expect = 1e-09
Identities = 87/580 (15%), Positives = 177/580 (30%), Gaps = 185/580 (31%)
Query: 64 PSNP----ARAYLGYVN---EKDSAK------KIVTDVFEIGDSAFLS-----------D 99
P+ P + +LGYV+ E + FE + +L
Sbjct: 54 PTTPAELVGK-FLGYVSSLVEPSKVGQFDQVLNLCLTEFE---NCYLEGNDIHALAAKLL 109
Query: 100 PPKNTTYNKKGLCSRC--EPGVFIGKIVPSNPARAYLGYVNEKDSAKKIFTDVFEIGDSA 157
+TT K + + + A V E ++ ++ +F
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNA--QLVA-IF------ 160
Query: 158 FLSGDLLVMDKWG----YLYFKD--RTGDTFPALK-------SRALQRYLRFLWAARRVA 204
G G YF++ T+ L + L +R A +V
Sbjct: 161 ---G--------GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 205 QKDLTIADIFR--EHAVRSPNK-----------VIFMF---------ENTEWTAQQVEAY 242
+ L +I E+ +P+K +I + + +T ++ +Y
Sbjct: 210 TQGL---NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSY 266
Query: 243 ----SNRVANFFLAQGLKKGDSVALMLENRPEFVCL--WLGL-SKLGVITALINHNLRQN 295
+ A + + DS + + + + ++G+ + ++ ++
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Query: 296 SLLHC-------INIAGVSAFIYGAELTDAVQEISTSLGSN----VKLFSWSPDTDSSSS 344
SL + ++I+ ++ ++ D V + ++ L + + L + S
Sbjct: 327 SLENNEGVPSPMLSISNLTQ----EQVQDYVNKTNSHLPAGKQVEISLVN-GAKNLVVSG 381
Query: 345 PVPRS-QALSPLLSEVPTSPPSLSYRV-GVQDKLIYIYTSGTTGLPKAAVISN--HRYYF 400
P P+S L+ L + R+ + KL + LP +++ H +
Sbjct: 382 P-PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKF----SNRFLP----VASPFHSHL- 431
Query: 401 LGGAIA--------YQIGFRTKDRFYTPL--PLYHTAGGAMCIGQALIFGCCVVIRKKFS 450
L A + F KD + P+Y T G
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKD-----IQIPVYDTFDG--------------------- 465
Query: 451 ASNYFSDVCKYKCTVGQYIGEMCRYLLSTP---EK-PEDKAHNVRLMFGNGLRPQIWSEF 506
SD+ ++ + ++ P E + KA ++ L FG G +
Sbjct: 466 -----SDLRVLSGSI---SERIVDCIIRLPVKWETTTQFKATHI-LDFGPGGASGL-GVL 515
Query: 507 VDRFRIAQIGEFYGATEGMAAILDINKSLDVSAVSEGIKK 546
R + + G +A LDIN D G K+
Sbjct: 516 THRNK-----DGTGVRVIVAGTLDINPDDDY-----GFKQ 545
Score = 47.7 bits (113), Expect = 1e-05
Identities = 58/303 (19%), Positives = 90/303 (29%), Gaps = 108/303 (35%)
Query: 74 YVNEKDSAKKIVTDVFEIGDSAFLSDPPKNTTYNKKGLCSRCEPGVFIGKIVPSNP---- 129
Y +A+ DV+ D+ F TY G I IV +NP
Sbjct: 1636 YKTS-KAAQ----DVWNRADNHFKD------TY-----------GFSILDIVINNPVNLT 1673
Query: 130 ----------------ARAYLGYVNEKDSAKKIFTDVFEIGDSAFLSGD--LLVMDKWGY 171
A + V+ K +KIF ++ E S + LL
Sbjct: 1674 IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL------- 1726
Query: 172 LYFKDRTGDTFPALK--SRALQRYLRFLWAARRVAQKDLTIADIFREH------AVRSPN 223
T T PAL +A L+ ++ + D T A H A+ S
Sbjct: 1727 ----SATQFTQPALTLMEKAAFEDLK----SKGLIPADATFAG----HSLGEYAALASLA 1774
Query: 224 KVIFMFENTEWTAQQVEAYSNR-VANFFLAQGLKKGDSVALMLENRPEFVCLWLGLSKLG 282
V+ E+ VE R + + G S M+ P V L
Sbjct: 1775 DVMS-IESL------VEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQ 1827
Query: 283 VITALI-----------NHNLR--QNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSN 329
+ + N+N+ Q AG +L A+ ++ L +
Sbjct: 1828 YVVERVGKRTGWLVEIVNYNVENQQ------YVAAG--------DL-RALDTVTNVL-NF 1871
Query: 330 VKL 332
+KL
Sbjct: 1872 IKL 1874
Score = 39.6 bits (92), Expect = 0.003
Identities = 67/409 (16%), Positives = 120/409 (29%), Gaps = 142/409 (34%)
Query: 292 LRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSS--------- 342
L SL H + + ++F ++L + + + L + F + D ++
Sbjct: 11 LSHGSLEHVLLVP-TASFFIASQLQE---QFNKILPEPTEGF-AADDEPTTPAELVGKFL 65
Query: 343 ---------SSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYT--------SGTT 385
S Q L+ L+E Y G D I+ + TT
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENC-----YLEG-ND----IHALAAKLLQENDTT 115
Query: 386 GLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVI 445
+ +I + Y A + R D+ L+ G G A +
Sbjct: 116 LVKTKELI---KNYIT----ARIMAKRPFDKKSNS-ALFRAVGE----GNAQLVAI---- 159
Query: 446 RKKF----SASNYFSDV----CKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNG 497
F + +YF ++ Y VG I L D +F G
Sbjct: 160 ---FGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLD----AEKVFTQG 212
Query: 498 LRPQIW---------SEFVDRFRIA-------QIGEFY------GATEG-----MAAILD 530
L W +++ I+ Q+ + G T G +
Sbjct: 213 LNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 531 INKSLDVSAVS-----------EGIKKALPSYARPLF---IRCLREVEMTGTYKLKKLDL 576
++ L V+AV+ ++KA+ LF +RC Y
Sbjct: 273 HSQGL-VTAVAIAETDSWESFFVSVRKAI----TVLFFIGVRCYE------AY------- 314
Query: 577 QKEGFDPNVIQDRL--------YYLSSKGVYEELTPEVYKDLVQGNIRL 617
P++++D L LS + +E +V + + N L
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLSISNLTQE---QVQDYVNKTNSHL 360
Score = 34.6 bits (79), Expect = 0.11
Identities = 49/287 (17%), Positives = 87/287 (30%), Gaps = 101/287 (35%)
Query: 355 LLSEVPTSPPSLS-YRVGVQDKLIY------IYTSGTTGLPKAAVI------SNHRYYFL 401
+L V +P +L+ + G + K I I+ + G K I + Y F
Sbjct: 1661 ILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR 1720
Query: 402 G--GAIAYQIGFRTKDRFYT-PLPLYHTAGGAMCIGQALIFGCCVVIRKK--FSASNYF- 455
G + T+ +T P A+ + + F ++ K A F
Sbjct: 1721 SEKGLL-----SATQ---FTQP---------ALTLMEKAAFE---DLKSKGLIPADATFA 1760
Query: 456 --SDVCKYKCTVGQYIGEMCRY--------LLSTPEKPEDKAHNVRLMFGNGLRPQIWSE 505
S +GE Y ++S E V ++F R
Sbjct: 1761 GHS------------LGE---YAALASLADVMSI----ES-L--VEVVF---YRGMTMQV 1795
Query: 506 FVDRFRIAQIGEFYGATEGMAAILD--INKSLDVSAVSEGIKKALPSYARPLFI------ 557
V R E + GM AI + S A+ +++ + I
Sbjct: 1796 AVPR------DELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE 1849
Query: 558 ----------RCLREV-EMTGTYKLKKLDLQK--EGFDPNVIQDRLY 591
R L V + KL+K+D+ + + ++ L+
Sbjct: 1850 NQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier
protei ribosomal peptide synthetase, NRPS, valine
adenylation, LIG; HET: AMP; 2.15A {Pseudomonas
aeruginosa} PDB: 4dg9_A*
Length = 620
Score = 58.3 bits (142), Expect = 4e-09
Identities = 28/221 (12%), Positives = 61/221 (27%), Gaps = 57/221 (25%)
Query: 191 QRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFF 250
+ +R + T+ F E A P++ +Q+ + +++++
Sbjct: 10 KAIVRMSQNSLLDLYAHPTVVARFSEMAALHPHREAIRDRFGSVDYRQLLDSAEQLSDYL 69
Query: 251 LAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITA------L--------INHNLRQNS 296
L + G + + E E + L L ++ + + RQ
Sbjct: 70 LEHYPQPGVCLGVYGEYSRESI---TCL--LAILLSGHHYLYIDLKQPAAWNAELCRQ-- 122
Query: 297 LLHCINIAGVSAFIYGAELTDAVQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLL 356
+ + + P P + P
Sbjct: 123 -------VDCRLILDCSTTPTPANGL--------------PCVPVRHLPAAPASVARP-- 159
Query: 357 SEVPTSPPSLSYRVGVQDKLIYIYTSGTTGLPKAAVISNHR 397
+ ++Y + + +SGTTG PKA + H
Sbjct: 160 ---CFAADQIAY-------INF--SSGTTGRPKAIACT-HA 187
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.2 bits (124), Expect = 5e-07
Identities = 95/642 (14%), Positives = 170/642 (26%), Gaps = 229/642 (35%)
Query: 8 DNQPGAIGFVSRLIPTIYPISIIRVDPVTSEPIRN-KKGLCTRCEPGEPGVFI------G 60
DNQ A VSRL +P ++ L P V I G
Sbjct: 122 DNQVFAKYNVSRL-----------------QPYLKLRQALL-ELRP-AKNVLIDGVLGSG 162
Query: 61 K------------IVPSNPARAY---LGYVNEKDSAKKIVTDVFEIGDSAFLSDPPKNTT 105
K + + + L N ++ +++
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK------------------ 204
Query: 106 YNKKGLCSRCEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIFTDVFEIGDSAFLSGDLLV 165
L + +P + + L + + +++ S LLV
Sbjct: 205 -----LLYQIDPN---WTSRSDHSSNIKLRIHSIQAELRRLLK-------SKPYENCLLV 249
Query: 166 MDK-WGYLYFKD-RTGDTFPALKSRALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPN 223
+ + + + F L + L + + + D + +
Sbjct: 250 LLNVQ------NAKAWNAF-NLSCKIL------------LTTRFKQVTD-----FLSAAT 285
Query: 224 KVIFMFENTEWTAQQVEAYSNRVANFFLAQ--GLKKGDSVALMLENRPEFVCLWLGLSKL 281
++ T E S L + + D L P V +L
Sbjct: 286 TTHISLDHHSMTLTPDEVKS------LLLKYLDCRPQD---L-----PREVLTTNPR-RL 330
Query: 282 GVITALI-NHNLRQNSLLHCINIAGVSAFI---YGAELTDAVQEISTSLGSNVKLFSWSP 337
+I I + ++ H +N ++ I +++ L +F P
Sbjct: 331 SIIAESIRDGLATWDNWKH-VNCDKLTTIIESSLNVLEPAEYRKMFDRLS----VF---P 382
Query: 338 DTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTGL----PKAAVI 393
S+ +P + LS + +V S + V +KL L PK + I
Sbjct: 383 P----SAHIP-TILLSLIWFDVIKSDVMV-----VVNKLH------KYSLVEKQPKESTI 426
Query: 394 SNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVIRKKF---- 449
S Y + K L H + I K F
Sbjct: 427 SIPSIYLE---------LKVKLENEYAL---H----RSIVDH-------YNIPKTFDSDD 463
Query: 450 ----SASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSE 505
YF Y +IG + L E PE +F +
Sbjct: 464 LIPPYLDQYF-----Y-----SHIG----HHLKNIEHPERMT-----LF-----RMV--- 496
Query: 506 FVD-RF---RIAQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALPSYARPL--FIRC 559
F+D RF +I + A+ + L + I P Y R + +
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTL-----QQLKFYKPYICDNDPKYERLVNAILDF 551
Query: 560 LREVEMTGTYKLKKLDLQKEGFDPNVIQDRLYYLSSKGVYEE 601
L ++E K DL ++ L + ++EE
Sbjct: 552 LPKIE-ENLICSKYTDL---------LRIALMA-EDEAIFEE 582
Score = 43.3 bits (101), Expect = 3e-04
Identities = 74/502 (14%), Positives = 149/502 (29%), Gaps = 172/502 (34%)
Query: 151 FEIGDSAFLSGDLL--VMDKWGYLYFKDRTGDTFPALKSRALQRYLRFLWAARRVAQKDL 208
FE G+ + D+L D + + + +Q + + L
Sbjct: 9 FETGEHQYQYKDILSVFEDA----FVDN--------FDCKDVQDMPKSI----------L 46
Query: 209 TIADIFREHAVRSPN---KVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALML 265
+ +I +H + S + + +F WT + + + F+ + L+
Sbjct: 47 SKEEI--DHIIMSKDAVSGTLRLF----WT---LLSKQEEMVQKFVEEVLRI-------- 89
Query: 266 ENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTS 325
N +L +S I RQ S++ T E
Sbjct: 90 -NYK-----FL-MSP-------IKTEQRQPSMM-----------------TRMYIEQRDR 118
Query: 326 LGSNVKLFSWSPDTDSSSSPVPRSQALSPL---LSEVPTSPPSLSYRVGVQDKLIYIYTS 382
L ++ ++F+ V R Q L L E+ P K + I
Sbjct: 119 LYNDNQVFA--KY------NVSRLQPYLKLRQALLEL--RP----------AKNVLID-- 156
Query: 383 GTTGLPK----AAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALI 438
G G K V +++ + + ++I F+ L ++ + + Q L
Sbjct: 157 GVLGSGKTWVALDVCLSYK---VQCKMDFKI-------FWLNLKNCNSPETVLEMLQKL- 205
Query: 439 FGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPE-----DKAHNVRLM 493
I +++ + S K + Q R LL + NV+
Sbjct: 206 ---LYQIDPNWTSRSDHSSNIKLRIHSIQ---AELRRLLKSKPYENCLLVLL---NVQ-- 254
Query: 494 FGNGLRPQIWSEFVDRFRI------AQIGEFYGAT-------EGMAAILDINKSLDVSAV 540
+ W+ F +I Q+ +F A + + L ++ +
Sbjct: 255 -----NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 541 SEGIK-KALPSYAR---PLFIRCLREV--EMTGTYK-LKKLDLQKEGFDPNVIQDRLYYL 593
+ + LP P + + E + T+ K ++ K +I+
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT---TIIE------ 360
Query: 594 SSKGVYEELTP----EVYKDLV 611
SS L P +++ L
Sbjct: 361 SS---LNVLEPAEYRKMFDRLS 379
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide
synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE;
2.00A {Neotyphodium lolii}
Length = 562
Score = 51.5 bits (124), Expect = 5e-07
Identities = 31/216 (14%), Positives = 68/216 (31%), Gaps = 59/216 (27%)
Query: 206 KDLTIADIFREHAVRSPNKVIFMFENT----------EWTAQQVEAYSNRVANFFLAQGL 255
+ + A P +WT +++ +N+VAN + L
Sbjct: 18 STVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL 77
Query: 256 KKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI----- 310
G ++A+ L+ + +G+ ++ +G + ++
Sbjct: 78 -HGRAIAVSLDRSLIAF---AII--VGI--------MK----------SG-NTYVPIEAG 112
Query: 311 YGAE-----LTDAVQEI---STSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTS 362
+ L D+ + + V+L + D+ + + + +
Sbjct: 113 LPNDRKSFLLRDSRAAMAFVCDNNFDGVELPPETKVLDTKNQSFIENLSTQDTSDILNNY 172
Query: 363 PPSLSYRVGVQDKLIY-IYTSGTTGLPKAAVISNHR 397
P +L Y +YTSG+TG PK +S
Sbjct: 173 PENL---------DAYLLYTSGSTGTPKGVRVS-RH 198
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate
forming; HET: PHE AMP; 1.90A {Brevibacillus brevis}
SCOP: e.23.1.1
Length = 563
Score = 47.9 bits (115), Expect = 8e-06
Identities = 19/67 (28%), Positives = 35/67 (52%)
Query: 206 KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALML 265
+D TI +F E + PN V + EN + T ++ +N++A F+ +G+ K V +M+
Sbjct: 37 RDKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMM 96
Query: 266 ENRPEFV 272
E +
Sbjct: 97 EKSIDLF 103
Score = 37.5 bits (88), Expect = 0.013
Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 376 LIY-IYTSGTTGLPKAAVISNHR 397
L Y IYTSGTTG PK ++ H+
Sbjct: 184 LAYVIYTSGTTGNPKGTMLE-HK 205
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea
agglomerans} PDB: 3hgv_A 3l2k_A*
Length = 369
Score = 38.2 bits (88), Expect = 0.007
Identities = 31/182 (17%), Positives = 50/182 (27%), Gaps = 29/182 (15%)
Query: 373 QDKLIYIY-TSGTTGLPKAAVISNHRYYFLGG---AIAYQIGFRTKDRFYTPLPLYHTAG 428
D +Y + GTTG PK V + L + R +P
Sbjct: 90 ADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIV 149
Query: 429 GAMCIGQALIFGCCVVIR-------KKFSASNYFSDVCKYKCTVGQYIGE---------- 471
GA+ +AL G K+ + + V KY + +
Sbjct: 150 GAINKERALRLGGMFFSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFL 209
Query: 472 -----MCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIWSEFVDR-FRIAQIGEFYGATE 523
+ R LL PE ++ + G L + YG+T
Sbjct: 210 VTTPPVLRELLKRPEVVLQMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTS 269
Query: 524 GM 525
+
Sbjct: 270 AL 271
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming,
thioester-forming, ligase; HET: COA PRX; 1.75A
{Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A*
2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Length = 652
Score = 34.9 bits (81), Expect = 0.086
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 217 HAVRSPNKVIFMFE------NTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPE 270
H + ++ ++E + + +++ R AN L G+KKGD VA+ + PE
Sbjct: 85 HLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPE 144
Score = 28.7 bits (65), Expect = 7.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 374 DKLIYIYTSGTTGLPK 389
D L +YTSG+TG PK
Sbjct: 257 DPLFILYTSGSTGKPK 272
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.088
Identities = 14/51 (27%), Positives = 17/51 (33%), Gaps = 24/51 (47%)
Query: 139 EKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFPALKSRA 189
EK + KK L L K LY D+ PAL +A
Sbjct: 18 EKQALKK-------------LQASL----K---LY----ADDSAPALAIKA 44
Score = 33.4 bits (75), Expect = 0.10
Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 26/54 (48%)
Query: 320 QEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQ 373
Q + L +++KL++ D S P+L+ + ++
Sbjct: 20 QALK-KLQASLKLYA--DD-----------------------SAPALAIKATME 47
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 31.8 bits (72), Expect = 0.20
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 206 KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALML 265
L I + + ++VI ++ + RV F + LK GD ++ +
Sbjct: 37 GPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVH--FTSNDLKSGD-ASINV 93
Query: 266 EN 267
N
Sbjct: 94 TN 95
>3zy2_A Putative GDP-fucose protein O-fucosyltransferase;
glycosyltransferase, GT-B, catalytic mechanism,; HET:
GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A*
3zy5_A* 3zy6_A*
Length = 362
Score = 32.8 bits (74), Expect = 0.32
Identities = 21/156 (13%), Positives = 45/156 (28%), Gaps = 18/156 (11%)
Query: 106 YNKKGLCSRCEPGVFIGKIVPS------NPARAYLGYVNEKDSAKKIFTDVFEIGDSAFL 159
+K C ++ P NP Y ++ + F D+ D +
Sbjct: 92 EKRKAFCWTPRQAIYDKSAEPGCHSKEGNPFGPYWDQIDVSFVGDEYFGDIPGGFDLNQM 151
Query: 160 SG-----DLLVMDKWGYLYFKDRTGDTFPALKSRALQRYLRFLWAARRVAQKDLTIADIF 214
+ +++ L F K ++Q+YLR+ + + A F
Sbjct: 152 GSRKKWLEKFPSEEYPVLAFSSAPAPFPSKGKVWSIQKYLRW-------SSRITEQAKKF 204
Query: 215 REHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFF 250
+ P + + + +W + F
Sbjct: 205 ISANLAKPFVAVHLRNDADWVRVCEHIDTTTNRPLF 240
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP
forming, related to firefly luciferase, ligase; HET:
AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Length = 663
Score = 31.8 bits (73), Expect = 0.70
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 217 HAVRSPNKVIFMFE------NTEWTAQQVEAYSNRVANFF-LAQGLKKGDSVALMLENRP 269
HA+++PNK +FE T +++ +VA + G++KGD+VA+ + P
Sbjct: 91 HALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVP 150
Query: 270 E 270
E
Sbjct: 151 E 151
Score = 28.3 bits (64), Expect = 8.8
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 374 DKLIYIYTSGTTGLPK 389
D L +YTSG+TG PK
Sbjct: 263 DPLFLLYTSGSTGAPK 278
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural
genomics of infectious diseases (csgid national
institute of allergy and infectious diseases; 1.70A
{Streptococcus pneumoniae}
Length = 265
Score = 30.7 bits (70), Expect = 1.2
Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 8/87 (9%)
Query: 4 IANIDNQPGAIGFVSR--LIPTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGK 61
+ + PGAI ++S + ++ + + D + E I +
Sbjct: 160 KSIVSKSPGAISYLSLTYIDDSVKSMKLNGYDL-SPENISSNNWPLWS-----YEHMYTL 213
Query: 62 IVPSNPARAYLGYVNEKDSAKKIVTDV 88
P+ A +L +V ++ + IV +
Sbjct: 214 GQPNELAAEFLNFVLSDETQEGIVKGL 240
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A
{Escherichia coli} PDB: 2w8i_A 2w8h_A*
Length = 359
Score = 30.7 bits (69), Expect = 1.3
Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 4/78 (5%)
Query: 319 VQEISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKL-I 377
+ + L V ++ +P P P +P L + S YR+GV D L +
Sbjct: 19 LPDSDYDLDKLVNVYPMTPGLIDQLRPEPVIARSNPQLDNLLKSYE---YRIGVGDVLMV 75
Query: 378 YIYTSGTTGLPKAAVISN 395
++ P S
Sbjct: 76 TVWDHPELTTPAGQYRSA 93
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia
cenocepacia} PDB: 2y4n_A*
Length = 437
Score = 30.7 bits (70), Expect = 1.7
Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 7/69 (10%)
Query: 381 TSGTTGLPKAAVISNHRYYFLGGAIA---YQIGFRTKDRFYTPLPLYH--TAGGAMCIGQ 435
+SGTTG P + +A G R D+ + Y T G G
Sbjct: 98 SSGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYG-YGLFTGGLGAHYG- 155
Query: 436 ALIFGCCVV 444
A G V+
Sbjct: 156 AERAGLTVI 164
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter,
phosphate transport receptor; HET: MSE; 1.55A
{Lactobacillus brevis}
Length = 264
Score = 29.6 bits (67), Expect = 2.9
Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 8/87 (9%)
Query: 4 IANIDNQPGAIGFVSR--LIPTIYPISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGK 61
+ + PGAI +V+ + T+ +S+ V P T + K
Sbjct: 160 RSIVATTPGAISYVAFSYVNKTVQALSLNHVAP-TEVNVTTNDWRIWS-----YEHLYTK 213
Query: 62 IVPSNPARAYLGYVNEKDSAKKIVTDV 88
P+ +A++ YV +V +
Sbjct: 214 GHPTGLTKAFITYVQSPAIQNTLVRQL 240
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated
to tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 28.2 bits (63), Expect = 3.5
Identities = 4/24 (16%), Positives = 11/24 (45%)
Query: 45 GLCTRCEPGEPGVFIGKIVPSNPA 68
+ T G+++ ++P + A
Sbjct: 36 YVGTSHTGEASGIYVKSVIPGSAA 59
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE ADP COA; 2.20A {Bacteroides
thetaiotaomicron} PDB: 3s89_A*
Length = 436
Score = 29.5 bits (67), Expect = 3.6
Identities = 23/69 (33%), Positives = 26/69 (37%), Gaps = 7/69 (10%)
Query: 381 TSGTTGLPKAAVISNHRYYFLGGAIA---YQIGFRTKDRFYTPLPLYH--TAGGAMCIGQ 435
+SGTTG P V S H +A Y +G R D F Y T G G
Sbjct: 94 SSGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSG-YGMFTGGLGFQYG- 151
Query: 436 ALIFGCCVV 444
A GC V
Sbjct: 152 AERLGCLTV 160
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation
pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Length = 443
Score = 29.2 bits (66), Expect = 4.7
Identities = 19/69 (27%), Positives = 23/69 (33%), Gaps = 7/69 (10%)
Query: 381 TSGTTGLPKAAVISNHRYYFLGGAIA---YQIGFRTKDRFYTPLPLYH--TAGGAMCIGQ 435
+SGTTG P + A G R D + Y T G + G
Sbjct: 100 SSGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFG-YGLFTGGLGIHYG- 157
Query: 436 ALIFGCCVV 444
A GC VV
Sbjct: 158 AERLGCMVV 166
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 26.9 bits (60), Expect = 5.7
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 26 PISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPA 68
P+ + +V + + G E GV++ I P+ P
Sbjct: 4 PVELHKVT-LYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPG 45
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase,
structural genomics, translation, NPPSFA; 2.42A {Aquifex
aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Length = 317
Score = 28.4 bits (64), Expect = 8.0
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 13/52 (25%)
Query: 259 DSVAL---MLENRPEFVCLWLGLSKLGVITALINHNLRQNS---LLHCINIA 304
DSV L +L+ + F L ++ + NH LR+++ C A
Sbjct: 36 DSVVLTDVLLKLKNYF-----SLKEVALAH--FNHMLRESAERDEEFCKEFA 80
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.138 0.415
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,589,243
Number of extensions: 595245
Number of successful extensions: 1472
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1413
Number of HSP's successfully gapped: 79
Length of query: 617
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 518
Effective length of database: 3,937,614
Effective search space: 2039684052
Effective search space used: 2039684052
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)