RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8155
(617 letters)
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 166 bits (421), Expect = 1e-44
Identities = 61/368 (16%), Positives = 130/368 (35%), Gaps = 29/368 (7%)
Query: 211 ADIFREHAVRSPNKVIFMFENTE------WTAQQVEAYSNRVANFFLAQGLKKGDSVALM 264
A+ H + ++ ++E + + +++ R AN L G+KKGD VA+
Sbjct: 75 ANCLDRHLQENGDRTAIIWEGDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIY 134
Query: 265 LENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEIST 324
+ PE L +++G + ++I ++ CI + I E A + I
Sbjct: 135 MPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPL 194
Query: 325 SLGSNVKLFSWSP---------DTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDK 375
+ L + + S + L SP + +D
Sbjct: 195 KKNVDDALKNPNVTSVEHVIVLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDP 254
Query: 376 LIYIYTSGTTGLPKAAVISNHRYY-FLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIG 434
L +YTSG+TG PK + + Y + Y + D ++ + G + +
Sbjct: 255 LFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLY 314
Query: 435 QALIFGCCVVI----RKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKA--H 488
L G ++ + + V K++ + R L++ +K +
Sbjct: 315 GPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRS 374
Query: 489 NVRLMF--GNGLRPQIWSEFVDRF--RIAQIGEFYGATE-GMAAILDINKSLDVSAVSEG 543
++R++ G + P+ W + + + + + TE G I + ++++ A S
Sbjct: 375 SLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSAT 434
Query: 544 IKKALPSY 551
+
Sbjct: 435 --RPFFGV 440
Score = 39.6 bits (92), Expect = 0.001
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 10/70 (14%)
Query: 117 PGVFIGKIVPSNP----ARAYLGYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYL 172
G G +V ++ AR G ++ F + + SGD D+ GY
Sbjct: 453 EGATEGNLVITDSWPGQARTLFGD------HERFEQTYFSTFKNMYFSGDGARRDEDGYY 506
Query: 173 YFKDRTGDTF 182
+ R D
Sbjct: 507 WITGRVDDVL 516
Score = 31.5 bits (71), Expect = 0.31
Identities = 13/67 (19%), Positives = 25/67 (37%)
Query: 536 DVSAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGFDPNVIQDRLYYLSS 595
+ V ++K + A P + + T + K+ + L+K L+
Sbjct: 571 LYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDTSNLGDTSTLAD 630
Query: 596 KGVYEEL 602
GV E+L
Sbjct: 631 PGVVEKL 637
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 146 bits (369), Expect = 3e-38
Identities = 64/369 (17%), Positives = 119/369 (32%), Gaps = 20/369 (5%)
Query: 207 DLTIADIFREHAVRSPNKVIFMF----ENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVA 262
+L + D A K + E T +V + R+ A G+ GD VA
Sbjct: 10 ELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVA 69
Query: 263 LMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEI 322
+ N + + + +G + N L + + +N A ++ L V+ I
Sbjct: 70 TLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAI 129
Query: 323 STSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTS 382
L + + + RV + YT+
Sbjct: 130 RGELKTVQHFVVMDEKAPEGYLAYEEAL-----------GEEADPVRVPERAACGMAYTT 178
Query: 383 GTTGLPKAAVISNHRYYF--LGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFG 440
GTTGLPK V S+ L ++ KD +P++H + L+
Sbjct: 179 GTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYAATLVGA 238
Query: 441 CCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVR-LMFGNGLR 499
V+ + ++ T + + L E + +R L+ G
Sbjct: 239 KQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTGHRLKTLRRLVVGGSAA 298
Query: 500 PQIWSEFVDRFRIAQIGEFYGATEGMAAILDINKSLDVSAVSEGIKKALP-SYARPLFIR 558
P+ +R + ++ + YG TE ++ + ++SE K L P+ +
Sbjct: 299 PRSLIARFERMGV-EVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLV 357
Query: 559 CLREVEMTG 567
LR + G
Sbjct: 358 RLRVADEEG 366
Score = 38.7 bits (89), Expect = 0.002
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 116 EPGVFIGKIVPSNPARAYLGYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYFK 175
+ G +G++ P GY +++ + T D F +GD+ V D+ GY+ K
Sbjct: 371 KDGKALGEVQLKGPWIT-GGYYGNEEATRSALTP-----DGFFRTGDIAVWDEEGYVEIK 424
Query: 176 DRTGDTF 182
DR D
Sbjct: 425 DRLKDLI 431
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 145 bits (365), Expect = 3e-37
Identities = 70/343 (20%), Positives = 130/343 (37%), Gaps = 26/343 (7%)
Query: 212 DIFREHAVRSPNKVIFMFENTE------WTAQQVEAYSNRVANFFL-AQGLKKGDSVALM 264
+ HA+++PNK +FE E T +++ +VA + G++KGD+VA+
Sbjct: 63 NCVDRHALKTPNKKAIIFEGDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVY 122
Query: 265 LENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEIST 324
+ PE + L +S++G I +++ NSL IN I E + I T
Sbjct: 123 MPMVPEAIITLLAISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIET 182
Query: 325 --------SLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKL 376
V+ T++ S + L + V +D L
Sbjct: 183 KRIVDDALRETPGVRHVLVYRKTNNPSVAFHAPRDLDWATEKKKYKTYYPCTPVDSEDPL 242
Query: 377 IYIYTSGTTGLPKAAVISNHRYYF-LGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQ 435
+YTSG+TG PK S Y + Y +D F+T + G +
Sbjct: 243 FLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTFDTHQEDVFFTAGDIGWITGHTYVVYG 302
Query: 436 ALIFGCCVVIRKKF----SASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAH--N 489
L++GC ++ + + S Y+ + ++K T R L + + +
Sbjct: 303 PLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSYIENHSLKS 362
Query: 490 VRLMF--GNGLRPQIWSEFVDRF--RIAQIGEFYGATEGMAAI 528
+R + G + ++W + ++ I + Y TE + +
Sbjct: 363 LRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHL 405
Score = 37.5 bits (86), Expect = 0.004
Identities = 10/70 (14%), Positives = 18/70 (25%), Gaps = 4/70 (5%)
Query: 114 RCEPGVFIGKIVPSNPARAYL-GYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYL 172
G + ++ D + + +GD DK GY+
Sbjct: 440 ELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTY---LNPYPGYYFTGDGAAKDKDGYI 496
Query: 173 YFKDRTGDTF 182
+ R D
Sbjct: 497 WILGRVDDVV 506
Score = 30.2 bits (67), Expect = 0.86
Identities = 8/41 (19%), Positives = 20/41 (48%)
Query: 538 SAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQK 578
+ ++K + +A P I + ++ T + K+ + L+K
Sbjct: 570 KHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRK 610
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 132 bits (333), Expect = 1e-33
Identities = 52/325 (16%), Positives = 104/325 (32%), Gaps = 24/325 (7%)
Query: 206 KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALML 265
+D TI +F E + PN V + EN + T ++ +N++A F+ +G+ K V +M+
Sbjct: 21 RDKTIHQLFEEQVSKRPNNVAIVCENEQLTYHELNVKANQLARIFIEKGIGKDTLVGIMM 80
Query: 266 ENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTS 325
E + L + K G I+ + + + ++ + + L + I +
Sbjct: 81 EKSIDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQFN 140
Query: 326 LGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTT 385
+ + ++ VP D IYTSGTT
Sbjct: 141 GQVEIFEEDTIKIREGTNLHVPSKS----------------------TDLAYVIYTSGTT 178
Query: 386 GLPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVVI 445
G PK ++ + L + KDR + A L +I
Sbjct: 179 GNPKGTMLEHKGISNLKVFFENSLNVTEKDRIGQFASISFDASVWEMFMALLTGASLYII 238
Query: 446 RKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSE 505
K N F +Y + + + + + + G+ P + ++
Sbjct: 239 LKDT--INDFVKFEQYINQKEITVITLPPTYVVHLDPERILSIQTLITAGSATSPSLVNK 296
Query: 506 FVDRFRIAQIGEFYGATEGMAAILD 530
+ ++ T +
Sbjct: 297 WKEKVTYINAYGPTETTICATTWVA 321
Score = 35.6 bits (81), Expect = 0.017
Identities = 10/54 (18%), Positives = 23/54 (42%)
Query: 523 EGMAAILDINKSLDVSAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDL 576
+ A K + + + + + LP+Y P + L ++ +T K+ + L
Sbjct: 454 PYLCAYFVSEKHIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQL 507
Score = 34.9 bits (79), Expect = 0.027
Identities = 12/69 (17%), Positives = 23/69 (33%), Gaps = 3/69 (4%)
Query: 115 CEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIFT-DVFEIGDSAFLSGDLLVMDKWGYLY 173
G G++ A GY + + F + F G+ + +GD G +
Sbjct: 351 KSVGE-AGELCIGGEGLA-RGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIE 408
Query: 174 FKDRTGDTF 182
+ R +
Sbjct: 409 YLGRIDNQV 417
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
sp. [TaxId: 512]}
Length = 503
Score = 132 bits (331), Expect = 2e-33
Identities = 68/327 (20%), Positives = 111/327 (33%), Gaps = 23/327 (7%)
Query: 209 TIADIFREHAVRSPNK--VIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 266
T+ ++ R A R+P+ + T ++ A VA A GL+ VA++
Sbjct: 3 TVNEMLRRAATRAPDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVAVVAP 62
Query: 267 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSL 326
N + V L L +LG + AL+N L+ L I ++A + A +
Sbjct: 63 NSADVVIAILALHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS 122
Query: 327 GSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTG 386
G+ + S P + + P ++ YTSGTTG
Sbjct: 123 GARIIFLGDLVRDGEPYS-------YGPPIEDPQREPAQPAF---------IFYTSGTTG 166
Query: 387 LPKAAVISNHRY--YFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIFGCCVV 444
LPKAA+I L + + + +PLYH G + AL V
Sbjct: 167 LPKAAIIPQRAAESRVLFMSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYV 226
Query: 445 IRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRL---MFGNGLRPQ 501
+ ++F + V + + T L + L F P
Sbjct: 227 VVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGATMPD 286
Query: 502 IWSEFVDRFRIAQIGEFYGATEGMAAI 528
E V + + YG TE M ++
Sbjct: 287 AVLETVHQHLPGEKVNIYGTTEAMNSL 313
Score = 32.7 bits (73), Expect = 0.14
Identities = 8/53 (15%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 528 ILDINKSLDVSAVSEGIKKA-LPSYARPLFIRCLREVEMTGTYKLKKLDLQKE 579
+ + ++L A+ + + L + RP L ++ K+ + L ++
Sbjct: 449 VPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQ 501
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 130 bits (328), Expect = 8e-33
Identities = 56/333 (16%), Positives = 105/333 (31%), Gaps = 11/333 (3%)
Query: 207 DLTIADIFREHAVRSPNK-----VIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSV 261
D T + + R T + S R+A GL +
Sbjct: 16 DGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEYFEMSVRLAEAMKRYGLNTNHRI 75
Query: 262 ALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQE 321
+ EN +F LG +GV A N + LL+ +NI+ + + +
Sbjct: 76 VVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILN 135
Query: 322 ISTSLGSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYT 381
+ L K+ TD + S L + + + +
Sbjct: 136 VQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNS 195
Query: 382 SGTTGLPKAAVISNHRY---YFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALI 438
SG+TGLPK + + + + + +P +H G +G +
Sbjct: 196 SGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLIC 255
Query: 439 FGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GN 496
V++ +F + + YK + + + + + N+ + G
Sbjct: 256 GFRVVLMY-RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGA 314
Query: 497 GLRPQIWSEFVDRFRIAQIGEFYGATEGMAAIL 529
L ++ RF + I + YG TE +AIL
Sbjct: 315 PLSKEVGEAVAKRFHLPGIRQGYGLTETTSAIL 347
Score = 37.6 bits (86), Expect = 0.004
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 7/68 (10%)
Query: 115 CEPGVFIGKIVPSNPARAYLGYVNEKDSAKKIFTDVFEIGDSAFLSGDLLVMDKWGYLYF 174
G++ P GYVN ++ + D SGD+ D+ + +
Sbjct: 379 LGVNQ-RGELCVRGPMIM-SGYVNNPEATNALID-----KDGWLHSGDIAYWDEDEHFFI 431
Query: 175 KDRTGDTF 182
DR
Sbjct: 432 VDRLKSLI 439
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
subtilis [TaxId: 1423]}
Length = 536
Score = 127 bits (319), Expect = 9e-32
Identities = 54/323 (16%), Positives = 112/323 (34%), Gaps = 11/323 (3%)
Query: 207 DLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLE 266
T D+ R+ A + +++ NT W+ ++++ ++R+A F G+++ D V + L
Sbjct: 24 GETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLP 83
Query: 267 NRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFIYGAELTDAVQEISTSL 326
N EF + L +LG + + R + + + A +A+I + SL
Sbjct: 84 NIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYR---SL 140
Query: 327 GSNVKLFSWSPDTDSSSSPVPRSQALSPLLSEVPTSPPSLSYRVGVQDKLIYIYTSGTTG 386
V+ + + L L +E P V D + G+TG
Sbjct: 141 ARQVQSKLPTLKNIIVAGEAEEFLPLEDLHTEPVKLPE-----VKSSDVAFLQLSGGSTG 195
Query: 387 LPKAAVISNHRYYFLGGAIAYQIGFRTKDRFYTPLPLYHTAGGAMCIGQALIF-GCCVVI 445
L K ++ Y + + LP+ H + +++ G VV+
Sbjct: 196 LSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVL 255
Query: 446 RKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMF--GNGLRPQIW 503
S + F + + K T+ + + + D +++++ G +
Sbjct: 256 SPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAA 315
Query: 504 SEFVDRFRIAQIGEFYGATEGMA 526
F F A +
Sbjct: 316 RRVKAVFGCTLQQVFGMAEGLVN 338
>d1auia_ d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calcineurin A
subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 473
Score = 30.0 bits (67), Expect = 1.0
Identities = 15/61 (24%), Positives = 19/61 (31%), Gaps = 4/61 (6%)
Query: 434 GQALIFGCCVVIRKKFSASNYFSDVCKYKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLM 493
Q F + I FSA NY DV K V +Y + N +
Sbjct: 281 SQTTGFPSLITI---FSAPNYL-DVYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDV 336
Query: 494 F 494
F
Sbjct: 337 F 337
>d1tf1a_ d.110.2.2 (A:) Transcriptional regulator AllR, C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 184
Score = 29.0 bits (64), Expect = 1.2
Identities = 22/204 (10%), Positives = 58/204 (28%), Gaps = 36/204 (17%)
Query: 132 AYLGYVNEKDSAKKIFTD-VFEIGDSAFLSGDLLVMDKWGYLYFKDRTGDTFPALKSRAL 190
+ G+++ A + G++ ++ + + + + + +
Sbjct: 6 YFQGHMDVLSVAGPFMRRLMLLSGETVNVA----IRNGNEAVLIGQLECKSMVRMCAPLG 61
Query: 191 QRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVEAYSNRVANFF 250
R A + L ++ + + T T +
Sbjct: 62 SRLPLHASGAGKALLYPLAEEELMSIILQT------GLQQFTPTTLVDMPTLLKD----- 110
Query: 251 LAQGLKKGDSVALMLENRPEFVCLWLGLSKLGVITALINHNLRQNSLLHCINIAGVSAFI 310
+ + R + +G+ S++ I+I+G S+ +
Sbjct: 111 -------------LEQARELGYTVDKEEHVVGLNCIASAIYDDVGSVVAAISISGPSSRL 157
Query: 311 -------YGAELTDAVQEISTSLG 327
G + D ++IST+LG
Sbjct: 158 TEDRFVSQGELVRDTARDISTALG 181
>d1hf2a2 c.102.1.1 (A:1-99) Cell-division inhibitor MinC, N-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 99
Score = 27.2 bits (60), Expect = 2.4
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 229 FENTEWTAQQVEAYSNRVANFFLAQGLKKGDSVALMLENRPE 270
++N E + A ++ FF KGD ++LM+EN +
Sbjct: 18 YQNLEEVLNAISARITQMGGFF-----AKGDRISLMIENHNK 54
>d2k4xa1 g.41.8.8 (A:1-55) Ribosomal protein S27ae {Thermoplasma
acidophilum [TaxId: 2303]}
Length = 55
Score = 25.5 bits (56), Expect = 3.8
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 108 KKGLCSRCEPGVFIGK 123
K C RC PGVF+ +
Sbjct: 17 KHRFCPRCGPGVFLAE 32
>d1czan2 c.55.1.3 (N:223-465) Mammalian type I hexokinase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 243
Score = 27.2 bits (60), Expect = 5.4
Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 9/82 (10%)
Query: 461 YKCTVGQYIGEMCRYLLSTPEKPEDKAHNVRLMFGNGLRPQIWSEFVDRFRIAQIGEFYG 520
K G Y+GE+ R +L K L+F + P++ + F + +
Sbjct: 72 EKMVSGMYLGELVRLILV-------KMAKEGLLFEGRITPELLTRGK--FNTSDVSAIEK 122
Query: 521 ATEGMAAILDINKSLDVSAVSE 542
EG+ +I L V +
Sbjct: 123 NKEGLHNAKEILTRLGVEPSDD 144
>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 91
Score = 25.7 bits (56), Expect = 5.6
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 26 PISIIRVDPVTSEPIRNKKGLCTRCEPGEPGVFIGKIVPSNPA 68
P+ + +V + + G E GV++ I P+ P
Sbjct: 4 PVELHKVT-LYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPG 45
>d1a3qa2 b.2.5.3 (A:37-226) p52 subunit of NF-kappa B (NFKB),
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 184
Score = 26.3 bits (58), Expect = 8.6
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 30 IRVDPVTSEPIRNKKGLCT 48
+ + PV S+PI + K
Sbjct: 165 LPLKPVISQPIHDSKSPGA 183
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.415
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,332,256
Number of extensions: 112391
Number of successful extensions: 332
Number of sequences better than 10.0: 1
Number of HSP's gapped: 322
Number of HSP's successfully gapped: 26
Length of query: 617
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 526
Effective length of database: 1,158,166
Effective search space: 609195316
Effective search space used: 609195316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.1 bits)