Query psy8156
Match_columns 362
No_of_seqs 168 out of 557
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 20:02:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8156.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8156hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3577|consensus 100.0 9.1E-64 2E-68 516.3 20.0 299 24-361 37-337 (556)
2 cd07465 CRD_FZ1 Cysteine-rich 100.0 6.2E-40 1.4E-44 277.4 8.3 122 27-150 2-123 (127)
3 cd07464 CRD_FZ2 Cysteine-rich 100.0 6.1E-40 1.3E-44 277.3 7.7 122 27-150 2-123 (127)
4 cd07466 CRD_FZ7 Cysteine-rich 100.0 5.6E-40 1.2E-44 277.0 7.2 121 27-149 2-122 (125)
5 cd07460 CRD_FZ5 Cysteine-rich 100.0 1.2E-39 2.6E-44 275.5 7.8 122 27-149 2-124 (127)
6 cd07463 CRD_FZ9 Cysteine-rich 100.0 1.2E-39 2.6E-44 275.7 7.5 122 27-149 2-124 (127)
7 cd07462 CRD_FZ10 Cysteine-rich 100.0 1.6E-39 3.6E-44 274.6 8.2 122 27-149 2-124 (127)
8 cd07442 CRD_SFRP4 Cysteine-ric 100.0 1.8E-39 3.8E-44 274.0 6.7 118 27-147 2-121 (127)
9 cd07441 CRD_SFRP3 Cysteine-ric 100.0 2E-39 4.3E-44 273.3 7.0 118 27-147 1-120 (126)
10 cd07461 CRD_FZ8 Cysteine-rich 100.0 2.5E-39 5.5E-44 273.2 7.2 121 27-148 2-123 (125)
11 cd07458 CRD_FZ1_like Cysteine- 100.0 2.8E-39 6.2E-44 270.9 7.1 118 28-147 1-118 (119)
12 cd07449 CRD_FZ3 Cysteine-rich 100.0 5.9E-39 1.3E-43 270.5 8.6 119 28-147 3-121 (127)
13 cd07457 CRD_FZ9_like Cysteine- 100.0 5.1E-39 1.1E-43 270.3 7.2 119 28-147 1-120 (121)
14 cd07448 CRD_FZ4 Cysteine-rich 100.0 8.8E-39 1.9E-43 270.6 8.1 121 28-149 2-123 (126)
15 cd07454 CRD_LIN_17 Cysteine-ri 100.0 9.9E-39 2.2E-43 269.2 6.8 119 27-149 2-121 (124)
16 cd07456 CRD_FZ5_like Cysteine- 100.0 1.3E-38 2.7E-43 267.5 6.9 118 29-147 1-119 (120)
17 PF01534 Frizzled: Frizzled/Sm 100.0 1.5E-37 3.1E-42 302.5 14.6 119 234-361 1-121 (328)
18 cd07888 CRD_corin_2 One of two 100.0 5.1E-38 1.1E-42 264.4 7.0 118 29-147 1-121 (122)
19 cd07445 CRD_corin_1 One of two 100.0 9E-38 2E-42 263.3 7.6 119 27-146 2-126 (130)
20 cd07450 CRD_FZ6 Cysteine-rich 100.0 1.4E-37 3E-42 262.5 7.0 110 28-137 3-112 (127)
21 cd07446 CRD_SFRP2 Cysteine-ric 100.0 2.3E-37 4.9E-42 262.1 7.8 119 27-149 2-123 (128)
22 cd07443 CRD_SFRP1 Cysteine-ric 100.0 7.1E-37 1.5E-41 257.4 7.6 117 25-148 2-120 (124)
23 cd07444 CRD_SFRP5 Cysteine-ric 100.0 6.7E-37 1.4E-41 258.5 7.2 118 25-148 2-121 (127)
24 cd07447 CRD_Carboxypeptidase_Z 100.0 6.5E-37 1.4E-41 259.2 7.0 115 28-146 2-121 (128)
25 cd07452 CRD_sizzled Cysteine-r 100.0 2.3E-36 5E-41 258.9 8.8 120 24-149 3-124 (141)
26 smart00063 FRI Frizzled. Droso 100.0 2.9E-36 6.3E-41 251.3 6.5 113 30-146 1-113 (113)
27 cd07453 CRD_crescent Cysteine- 100.0 3.9E-36 8.3E-41 256.0 6.8 115 28-148 1-117 (135)
28 cd07451 CRD_SMO Cysteine-rich 100.0 3.4E-34 7.3E-39 243.2 7.2 113 27-146 2-117 (132)
29 cd07455 CRD_Collagen_XVIII Cys 100.0 4E-34 8.8E-39 239.9 5.6 113 27-146 2-117 (123)
30 cd07066 CRD_FZ CRD_domain cyst 100.0 4.8E-29 1E-33 209.5 6.4 117 29-147 1-118 (119)
31 PF01392 Fz: Fz domain; Inter 99.9 3.1E-26 6.6E-31 190.5 4.5 114 30-144 1-116 (116)
32 cd07459 CRD_TK_ROR_like Cystei 98.4 1.4E-07 3E-12 81.3 3.2 112 28-144 1-130 (135)
33 PF05462 Dicty_CAR: Slime mold 98.1 2.2E-05 4.7E-10 76.5 11.0 98 237-358 2-99 (303)
34 cd07467 CRD_TK_ROR1 Cysteine-r 97.4 7.1E-05 1.5E-09 64.5 1.8 117 27-145 2-133 (142)
35 cd07468 CRD_TK_ROR2 Cysteine-r 97.2 0.00015 3.3E-09 62.4 1.8 115 27-144 2-132 (140)
36 cd07469 CRD_TK_ROR_related Cys 96.7 0.00047 1E-08 59.9 0.3 86 27-113 2-97 (147)
37 PF00002 7tm_2: 7 transmembran 95.7 0.0053 1.1E-07 57.0 1.9 95 243-358 2-96 (242)
38 KOG4193|consensus 93.7 0.32 6.9E-06 51.9 9.3 85 247-358 325-410 (610)
39 PF12929 Mid1: Stretch-activat 92.6 0.14 3.1E-06 52.1 4.5 92 26-117 229-393 (427)
40 PF11710 Git3: G protein-coupl 89.4 1.4 3E-05 40.5 7.3 91 246-358 5-98 (201)
41 PF02101 Ocular_alb: Ocular al 63.2 61 0.0013 32.8 9.8 60 278-352 69-134 (405)
42 KOG4564|consensus 58.2 86 0.0019 32.7 10.2 93 249-353 152-248 (473)
43 PF11694 DUF3290: Protein of u 54.3 55 0.0012 28.6 7.0 55 240-294 11-65 (149)
44 COG2270 Permeases of the major 49.3 90 0.002 32.2 8.6 26 278-303 113-138 (438)
45 PF10856 DUF2678: Protein of u 44.5 7.8 0.00017 32.4 0.2 59 233-296 17-77 (118)
46 PF03908 Sec20: Sec20; InterP 31.8 44 0.00096 26.4 2.7 22 275-296 67-88 (92)
47 PF03694 Erg28: Erg28 like pro 29.5 1.2E+02 0.0026 25.2 4.9 21 277-297 68-88 (111)
48 PF06024 DUF912: Nucleopolyhed 27.6 34 0.00073 27.8 1.3 34 242-275 60-93 (101)
49 PF10582 Connexin_CCC: Gap jun 27.0 1.7E+02 0.0038 22.1 5.0 27 237-263 38-64 (67)
50 PF08566 Pam17: Mitochondrial 26.4 2.5E+02 0.0054 25.3 6.7 56 246-301 39-99 (173)
51 KOG3821|consensus 26.3 33 0.00071 36.1 1.2 50 73-127 244-294 (563)
52 cd07912 Tweety_N N-terminal do 25.1 3.4E+02 0.0075 27.8 8.3 26 243-268 37-62 (418)
53 PF10337 DUF2422: Protein of u 24.3 3.4E+02 0.0075 27.8 8.3 67 241-309 17-96 (459)
54 PF10726 DUF2518: Protein of f 22.9 1.2E+02 0.0025 26.6 3.7 59 238-299 4-65 (145)
55 PF10854 DUF2649: Protein of u 22.7 78 0.0017 23.5 2.2 19 343-361 37-55 (67)
56 PF01153 Glypican: Glypican; 20.4 13 0.00029 39.3 -3.0 49 73-126 236-285 (557)
No 1
>KOG3577|consensus
Probab=100.00 E-value=9.1e-64 Score=516.33 Aligned_cols=299 Identities=47% Similarity=0.913 Sum_probs=243.9
Q ss_pred CCCCCceeeeCcccccCCCCCCcccCCCCCCCcHHHHHHhhhcccccccccccccccccccccccccccC-CCcccCCcH
Q psy8156 24 LPIHAKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTI-LERAIPPCR 102 (362)
Q Consensus 24 ~~~~~~Cepi~~~~C~~l~Yn~T~~PN~~g~~tq~e~~~~l~~f~~L~~~~Cs~~l~~fLCs~y~P~C~~-~~~~~~PCR 102 (362)
.+...+|+||++++|++++||.|++||++||++|+||..++++|.||++.+||+++++||||+|+|+|++ .+++++|||
T Consensus 37 ~~~~~~c~pi~i~~C~~i~Yn~T~~PNll~H~tQ~ea~~~~~~f~PLv~~~Cs~~l~~FLCS~y~P~C~~~~d~pi~PCR 116 (556)
T KOG3577|consen 37 AAGKARCEPITIPMCQGLGYNMTAMPNLVGHETQEEAGLKLHQFHPLVALRCSPGLRFFLCSLYAPMCTEDLDRPILPCR 116 (556)
T ss_pred ccccccccceeccccCCCCCCcccCCccccchhHHHhhhcccccCCccccccchhhhhHhhcCCCCcCccccCcccCccH
Confidence 3566799999999999999999999999999999999999999999999999999999999999999996 889999999
Q ss_pred hhhHHHhhcchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCC
Q psy8156 103 NLCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNEEGGNGPDSLCVGDNEEGGKSSTLSPMIESNFGKD 182 (362)
Q Consensus 103 slCe~v~~~C~~~~~~~g~~WP~~l~C~~fP~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 182 (362)
++||++|++|+++|..||+.||++|+|++||..++. +++|++++.+......... ..+..
T Consensus 117 slCe~ar~~Ce~~m~~~gf~WPe~L~C~~fp~~~~~-~~~C~~~~~~~~~~~~~~~---~~~~~---------------- 176 (556)
T KOG3577|consen 117 SLCEAAREGCEPLMEMFGFPWPEFLRCDKFPVPDSA-GELCMGPPSEGFAISAGSA---GVSVL---------------- 176 (556)
T ss_pred HHHHHHhcccHHHHHhcCCCCCccccCCCCCCCCCc-cccccCCccccccCCCCCC---CCCCC----------------
Confidence 999999999999999999999999999999999753 6899999776422111100 00000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCceeecCccccCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8156 183 LRPGVSYPNLPENAKDYGFVCPLHFKIPPGLDYELKVGDKVEKNCGAPCDGMFFSEKEKKMSRLWVGIWSALCATSCLFT 262 (362)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~Cp~~l~~~~~~~y~~~~~~~~~~~C~~pC~~~~ft~~e~~~~~~w~~v~s~lc~i~Tlft 262 (362)
...+. |.- .......|+. +.++. .|.... ...+++|+++|++++|+++|+++++.|++.||.+|+++|+||
T Consensus 177 ~~~g~--~~~---~~~~~~~~~~-~~~~~--~~~~~~-~~~~~~C~~~C~~~~f~~~e~~~~~~~i~~~s~~c~~~tlft 247 (556)
T KOG3577|consen 177 PDFGG--PGV---VLAKPWSDEL-CQNPS--NFVGKE-SSEISNCAPPCPNPLFSRDENRFARSWIGIWSALCFLSTLFT 247 (556)
T ss_pred CCCCC--Ccc---ccCCCCcccc-ccCcc--cccccc-ccCcccCCCCCCCcccchhhhhhHHHHhhhhhhccchhhHhH
Confidence 00000 000 0000111211 22221 111111 112568999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhhcC-CccccCCCCCCCCCCCcccceeeeecCCCCCchHHHHHHH
Q psy8156 263 VLTFMIDSDRFRYPERPIIFLSVCYLMVSITYIIGFMSG-DKISCTKPFSPPPEHPHLAMVSTITQGTRQEACTILFMIL 341 (362)
Q Consensus 263 vlTF~id~~rf~YPerpIifls~Cy~~~Sl~~li~~~~~-~~iaC~~~~~~~~~~~~~~~~~~~~~g~~~~~C~i~F~l~ 341 (362)
++||++|+.|||||||||+|+++||++++++|+++++.| ++++|++.. ...+..+|+++..|+++|+++
T Consensus 248 ~ltf~~d~~rfryper~i~~l~~c~~~~s~~~~~~~~~g~~~~~c~~~~----------~~~~~~~~~~~~~C~~vf~l~ 317 (556)
T KOG3577|consen 248 VLTFLIDRMRFRYPERPIFFLSACYLIVSVGYLSSFVLGSDEIACRATP----------ARLLVQTGLENSGCTLVFLLL 317 (556)
T ss_pred HHhhccchhhccCCCcchhhHHHhhhhhccceeecccCCCceeccCCCC----------CCceeecCCCCCCceeeehhH
Confidence 999999999999999999999999999999999999887 799999621 124567788899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q psy8156 342 YFFGMASSIWDVFVMASTTI 361 (362)
Q Consensus 342 Yff~mAa~iWWviLt~tW~~ 361 (362)
|||+||+.+||++|+++|++
T Consensus 318 y~f~~a~~~wwv~l~l~w~l 337 (556)
T KOG3577|consen 318 YFFLMAGSVWWVILTLTWFL 337 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999984
No 2
>cd07465 CRD_FZ1 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 1 (Fz1) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 1 (Fz1) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata.
Probab=100.00 E-value=6.2e-40 Score=277.42 Aligned_cols=122 Identities=67% Similarity=1.365 Sum_probs=115.9
Q ss_pred CCceeeeCcccccCCCCCCcccCCCCCCCcHHHHHHhhhcccccccccccccccccccccccccccCCCcccCCcHhhhH
Q psy8156 27 HAKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTILERAIPPCRNLCL 106 (362)
Q Consensus 27 ~~~Cepi~~~~C~~l~Yn~T~~PN~~g~~tq~e~~~~l~~f~~L~~~~Cs~~l~~fLCs~y~P~C~~~~~~~~PCRslCe 106 (362)
.++||||++++|++++||.|+|||++||++|+||..++++|.+|++++||+++++||||+|+|+|+..+++++|||++||
T Consensus 2 ~~~Cepi~~~~C~~l~Yn~T~~PN~lgh~~q~ea~~~~~~f~pLv~~~Csp~l~~FLCSl~~P~C~~~~~~i~PCRslCe 81 (127)
T cd07465 2 HGYCQPISIPLCTDIAYNQTIMPNLLGHTNQEDAGLEVHQFYPLVKVQCSAELKFFLCSMYAPVCTVLEQALPPCRSLCE 81 (127)
T ss_pred CCeeeeCCHHHhCCCCCCcccCCcccCCCCHHHHHHHHHHHHHHHhCCCChhhHhHhhhccCCcccCCCCcCCccHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999876789999999999
Q ss_pred HHhhcchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCCCCC
Q psy8156 107 SARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNEEG 150 (362)
Q Consensus 107 ~v~~~C~~~~~~~g~~WP~~l~C~~fP~~~~~~~~~C~~~~~~~ 150 (362)
+||++|+++|+.||++||+.|+|++||+.++ +.+|++++.++
T Consensus 82 ~vr~~C~~~m~~fg~~WP~~l~C~~fP~~~~--~~~C~~~~~~~ 123 (127)
T cd07465 82 RARQGCEALMNKFGFQWPDTLRCEKFPVHGA--GELCVGQNTSE 123 (127)
T ss_pred HHHHHHHHHHHHhCCCCCCcCCcccCCCCCC--CCcccCCCCCC
Confidence 9999999999999999999999999999876 78999886553
No 3
>cd07464 CRD_FZ2 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 2 (Fz2) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 2 (Fz2) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Fz2 is involved in the Wnt/beta-catenin signaling pathway and in the activation of protein kinase C and calcium/calmodulin-dependent protein kinase (CaM kinase).
Probab=100.00 E-value=6.1e-40 Score=277.26 Aligned_cols=122 Identities=66% Similarity=1.337 Sum_probs=116.0
Q ss_pred CCceeeeCcccccCCCCCCcccCCCCCCCcHHHHHHhhhcccccccccccccccccccccccccccCCCcccCCcHhhhH
Q psy8156 27 HAKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTILERAIPPCRNLCL 106 (362)
Q Consensus 27 ~~~Cepi~~~~C~~l~Yn~T~~PN~~g~~tq~e~~~~l~~f~~L~~~~Cs~~l~~fLCs~y~P~C~~~~~~~~PCRslCe 106 (362)
.++||||++++|++++||.|.|||++||++|+||..++++|.+|++++||+++++||||+|+|+|+..+++++|||++||
T Consensus 2 ~~~CepI~~~~C~~l~Yn~T~~PN~lgH~sq~ea~~~~~~f~pLv~~~Csp~l~~FlCSl~~P~C~~~~~~i~PCRslCe 81 (127)
T cd07464 2 HGFCQPISIPLCTDIAYNQTIMPNLLGHTNQEDAGLEVHQFYPLVKVQCSLELRFFLCSMYAPVCTVLEQAIPPCRSICE 81 (127)
T ss_pred CCccccCChhhhCCCCCCcccCCcccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHhhccCCccCCCCCcCCCcHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999876789999999999
Q ss_pred HHhhcchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCCCCC
Q psy8156 107 SARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNEEG 150 (362)
Q Consensus 107 ~v~~~C~~~~~~~g~~WP~~l~C~~fP~~~~~~~~~C~~~~~~~ 150 (362)
+||++|+++|+.||++||+.|+|++||+.+. +.+|++.+.++
T Consensus 82 ~vr~~C~~~m~~fg~~WP~~l~C~~fP~~~~--~~~C~~~~~~~ 123 (127)
T cd07464 82 RARQGCEALMNKFGFQWPERLRCENFPRHGA--EQICVGQNHSE 123 (127)
T ss_pred HHHHHHHHHHHHhCCCCCCcCCcccCCCCCC--CCcCCCCCCCC
Confidence 9999999999999999999999999999875 78999886654
No 4
>cd07466 CRD_FZ7 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 7 (Fz7) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 7 (Fz7) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Xenopus Fz7 is important in Wnt/beta-catenin signaling pathways controlling the transcriptional activation of target genes Siamois and Xnr3 in the animal caps of late blastula.
Probab=100.00 E-value=5.6e-40 Score=276.98 Aligned_cols=121 Identities=68% Similarity=1.383 Sum_probs=115.0
Q ss_pred CCceeeeCcccccCCCCCCcccCCCCCCCcHHHHHHhhhcccccccccccccccccccccccccccCCCcccCCcHhhhH
Q psy8156 27 HAKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTILERAIPPCRNLCL 106 (362)
Q Consensus 27 ~~~Cepi~~~~C~~l~Yn~T~~PN~~g~~tq~e~~~~l~~f~~L~~~~Cs~~l~~fLCs~y~P~C~~~~~~~~PCRslCe 106 (362)
.++||||++++|++++||.|+|||++||++|+||..+++.|.+|++.+||+++++||||+|+|+|+..+++++|||++||
T Consensus 2 ~~~CepI~~~~C~~l~Yn~T~~PN~lgH~~q~ea~~~~~~f~pLv~~~Csp~l~~FlCsl~~P~C~~~~~~i~PCRslCe 81 (125)
T cd07466 2 HGFCQPISIPLCTDIAYNQTIMPNLLGHTNQEDAGLEVHQFYPLVKVQCSPELKFFLCSMYAPVCTVLEQAIPPCRSLCE 81 (125)
T ss_pred CCccccCCHHHhCCCCCCcccCCcccCCCCHHHHHHHHHHHHHHHhCCCChhHHHHhhhccCCccCCCCCcCCCcHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999876789999999999
Q ss_pred HHhhcchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCCCC
Q psy8156 107 SARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNEE 149 (362)
Q Consensus 107 ~v~~~C~~~~~~~g~~WP~~l~C~~fP~~~~~~~~~C~~~~~~ 149 (362)
+||++|+++|+.||++||+.|+|++||+.++ +.+|++++.+
T Consensus 82 ~vr~~C~~~m~~fg~~WP~~l~C~~fP~~~~--~~~Ci~~~~~ 122 (125)
T cd07466 82 RARQGCEALMNKFGFQWPERLRCENFPVHGA--GEICVGQNTS 122 (125)
T ss_pred HHHHHHHHHHHHhCCCCCCcCCcccCCCCCC--CCcCcCCCCC
Confidence 9999999999999999999999999999876 6899987544
No 5
>cd07460 CRD_FZ5 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 5 (Fz5) receptor.proteins. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 5 (Fz5) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Fz5 plays critical regulating roles in the yolk sac and placental angiogenesis, in the maturation of the Paneth cell phenotype, in governing the neural potential of progenitors in the developing retina, and in neuronal s
Probab=100.00 E-value=1.2e-39 Score=275.47 Aligned_cols=122 Identities=47% Similarity=1.121 Sum_probs=115.6
Q ss_pred CCceeeeCcccccCCCCCCcccCCCCCCCcHHHHHHhhhcccccccccccccccccccccccccccC-CCcccCCcHhhh
Q psy8156 27 HAKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTI-LERAIPPCRNLC 105 (362)
Q Consensus 27 ~~~Cepi~~~~C~~l~Yn~T~~PN~~g~~tq~e~~~~l~~f~~L~~~~Cs~~l~~fLCs~y~P~C~~-~~~~~~PCRslC 105 (362)
.++||||++++|+|++||.|+|||++||++|+||..++++|.+|++++||+++++||||+|+|+|++ ..++++|||++|
T Consensus 2 ~~~CepI~~~~C~~l~Yn~T~~PN~lgh~~q~ea~~~~~~f~pLv~~~Csp~l~~FlCS~~~P~C~~~~~~~i~PCRslC 81 (127)
T cd07460 2 ALVCQEITVPMCKGIGYNLTYMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLRFFLCSMYTPICLPDYRKPLPPCRSVC 81 (127)
T ss_pred CCEecccChhhhCCCCCCcccCCCccCCCCHHHHHHHHHHHHHHHhCCCChhHHHHhhhccCccccCCCCCcCCccHHHH
Confidence 5799999999999999999999999999999999999999999999999999999999999999986 567899999999
Q ss_pred HHHhhcchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCCCC
Q psy8156 106 LSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNEE 149 (362)
Q Consensus 106 e~v~~~C~~~~~~~g~~WP~~l~C~~fP~~~~~~~~~C~~~~~~ 149 (362)
|+||++|+++|+.||++||+.|+|++||+.++. +.+|++++.+
T Consensus 82 e~vr~~C~~~m~~fg~~WP~~l~C~~fP~~~~~-~~~C~~~~~~ 124 (127)
T cd07460 82 ERAKAGCSPLMRQYGFAWPERMNCDRLPVLGDP-ETLCMDYNRT 124 (127)
T ss_pred HHHHHHHHHHHHHhCCCCCCcCChhhCCCCCCC-CCccCCCCCC
Confidence 999999999999999999999999999999874 7899988654
No 6
>cd07463 CRD_FZ9 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 9 (Fz9) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 9 (Fz9) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Fz9 may play a signaling role in lymphoid development and maturation, particularly at points where B cells undergo self-renewal prior to further differentiation.
Probab=100.00 E-value=1.2e-39 Score=275.73 Aligned_cols=122 Identities=43% Similarity=1.004 Sum_probs=115.6
Q ss_pred CCceeeeCcccccCCCCCCcccCCCCCCCcHHHHHHhhhcccccccccccccccccccccccccccC-CCcccCCcHhhh
Q psy8156 27 HAKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTI-LERAIPPCRNLC 105 (362)
Q Consensus 27 ~~~Cepi~~~~C~~l~Yn~T~~PN~~g~~tq~e~~~~l~~f~~L~~~~Cs~~l~~fLCs~y~P~C~~-~~~~~~PCRslC 105 (362)
+++||||++++|+|++||.|+|||++||++|+||..++++|.+|++++||+++++||||+|+|+|++ .+++++|||++|
T Consensus 2 ~~~CepI~~~~C~~l~Yn~T~~PN~lgh~sq~ea~~~~~~f~pLv~~~Csp~l~~FlCS~~~P~C~~~~~~~i~PCRslC 81 (127)
T cd07463 2 AAKCQPVVIPMCRGIGYNLTRMPNFLGHDSQREAAIKLNEFAPLVEYGCHVHLRFFLCSLYAPMCTDQVSTSIPACRPMC 81 (127)
T ss_pred CCccccCChhhhCCCCcCcccCCcccCCcCHHHHHHHHHHHHHHHhcCCChhhHHHhhhccccccCCCCCCcCCccHHHH
Confidence 5799999999999999999999999999999999999999999999999999999999999999987 567899999999
Q ss_pred HHHhhcchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCCCC
Q psy8156 106 LSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNEE 149 (362)
Q Consensus 106 e~v~~~C~~~~~~~g~~WP~~l~C~~fP~~~~~~~~~C~~~~~~ 149 (362)
|+||++|+++|+.||+.||+.|+|++||+.+++ +.+|++++.+
T Consensus 82 e~vr~~C~~~m~~fg~~WP~~l~C~~fP~~~~~-~~~C~~~~~~ 124 (127)
T cd07463 82 EQARQKCSPIMEQFNFGWPESLDCSRLPTRNDP-NALCMEAPEN 124 (127)
T ss_pred HHHHHHHHHHHHHhCCCCCCcCChhhCCCCCCC-CcccCCCCcc
Confidence 999999999999999999999999999999874 7899988653
No 7
>cd07462 CRD_FZ10 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 10 (Fz10) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 10 (Fz10) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. The cellular functon of Fz10 is unknown.
Probab=100.00 E-value=1.6e-39 Score=274.63 Aligned_cols=122 Identities=43% Similarity=1.015 Sum_probs=115.1
Q ss_pred CCceeeeCcccccCCCCCCcccCCCCCCCcHHHHHHhhhcccccccccccccccccccccccccccC-CCcccCCcHhhh
Q psy8156 27 HAKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTI-LERAIPPCRNLC 105 (362)
Q Consensus 27 ~~~Cepi~~~~C~~l~Yn~T~~PN~~g~~tq~e~~~~l~~f~~L~~~~Cs~~l~~fLCs~y~P~C~~-~~~~~~PCRslC 105 (362)
.++|+||++++|++++||.|+|||++||++|+||..++++|.+|++++||+++++||||+|+|+|+. ..++++|||++|
T Consensus 2 ~~~C~pI~~~~C~~l~Yn~T~~PN~lgH~~q~ea~~~~~~f~pLv~~~C~p~l~~FlCsl~~P~C~~~~~~~i~PCRslC 81 (127)
T cd07462 2 EGRCQPIEIPMCKDIGYNMTRMPNLMGHENQREAAIQLHEFAPLVEYGCHSHLKFFLCSLYAPMCTEQVSTPIPACRVMC 81 (127)
T ss_pred CCeeeecChhhhCCCCcCceeCCcccCCcCHHHHHHHHHHHHHHhccCCChhhHHHHHhccccccCCCCCCcCCccHHHH
Confidence 4799999999999999999999999999999999999999999999999999999999999999987 568899999999
Q ss_pred HHHhhcchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCCCC
Q psy8156 106 LSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNEE 149 (362)
Q Consensus 106 e~v~~~C~~~~~~~g~~WP~~l~C~~fP~~~~~~~~~C~~~~~~ 149 (362)
|+||++|+++|+.||+.||+.|+|++||+.++. +.+|++++.+
T Consensus 82 e~vr~~C~~~m~~~g~~WP~~l~C~~fP~~~~~-~~lc~~~~~~ 124 (127)
T cd07462 82 EQARLKCSPIMEQFNFKWPDSLDCSKLPNKNDP-NYLCMEAPNN 124 (127)
T ss_pred HHHHHHHHHHHHHhCCCCCCcCCcccCCCCCCC-CcccCCCCCC
Confidence 999999999999999999999999999998874 6799988654
No 8
>cd07442 CRD_SFRP4 Cysteine-rich domain of the secreted frizzled-related protein 4 (SFRP4), a Wnt antagonist. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related Protein 4 (SFRP4), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to the CRDs domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs.
Probab=100.00 E-value=1.8e-39 Score=273.98 Aligned_cols=118 Identities=45% Similarity=0.989 Sum_probs=112.2
Q ss_pred CCceeeeCcccccCCCCCCcccCCCCCCCcHHHHHHhhhcccccccccccccccccccccccccccC--CCcccCCcHhh
Q psy8156 27 HAKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTI--LERAIPPCRNL 104 (362)
Q Consensus 27 ~~~Cepi~~~~C~~l~Yn~T~~PN~~g~~tq~e~~~~l~~f~~L~~~~Cs~~l~~fLCs~y~P~C~~--~~~~~~PCRsl 104 (362)
+++||||++++|++++||.|+|||++||++|+||+.++++|.+|++++||+++++||||+|+|+|+. .+++++|||++
T Consensus 2 ~a~CepI~i~~C~~l~Yn~T~~PN~lgH~~q~ea~~~~~~f~pLv~~~Csp~l~~FLCS~~~P~C~~~~~~~~i~PCRsl 81 (127)
T cd07442 2 GAPCEAVRIPMCRHMPWNITRMPNHLHHSTQENAVLAIEQYEELVDTGCSPVLPFFLCAMYAPICTLEFLYDPIKPCRSV 81 (127)
T ss_pred CCcccccChhhhCCCCcCcccCcCccCCCCHHHHHHHHHHHHHHHcCCCCcchHHHHHhhcCCccCCCCCCCcCCccHHH
Confidence 5899999999999999999999999999999999999999999999999999999999999999986 46899999999
Q ss_pred hHHHhhcchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCC
Q psy8156 105 CLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDN 147 (362)
Q Consensus 105 Ce~v~~~C~~~~~~~g~~WP~~l~C~~fP~~~~~~~~~C~~~~ 147 (362)
||+||++|+++|+.||++||+.|+|++||..++ ++|+.+.
T Consensus 82 Ce~vr~~C~~~m~~fg~~WP~~L~C~~fP~~~~---~~Ci~p~ 121 (127)
T cd07442 82 CQRARDGCEPIMRRYNHSWPESLACDDLPVYDR---GVCISPE 121 (127)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCCcccCCCCCC---CcccCHH
Confidence 999999999999999999999999999999753 5899874
No 9
>cd07441 CRD_SFRP3 Cysteine-rich domain of the secreted frizzled-related protein 3 (SFRP3, alias FRZB), a Wnt antagonist. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related protein 3 (SFRP3, alias FRZB), which plays important roles in embryogenesis and postnatal development as an antagonist of Wnt proteins, key players in a number of fundamental cellular processes. SFRPs antagonize the activation of Wnt signaling by binding to the CRD domains of frizzled proteins (Fz), thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs. SFRP3 regulates Wnt signaling activity in bone development and homeostasis. It is also involved in the control of planar cell polarity.
Probab=100.00 E-value=2e-39 Score=273.32 Aligned_cols=118 Identities=42% Similarity=0.953 Sum_probs=111.9
Q ss_pred CCceeeeCcccccCCCCCCcccCCCCCCCcHHHHHHhhhcccccccccccccccccccccccccccC--CCcccCCcHhh
Q psy8156 27 HAKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTI--LERAIPPCRNL 104 (362)
Q Consensus 27 ~~~Cepi~~~~C~~l~Yn~T~~PN~~g~~tq~e~~~~l~~f~~L~~~~Cs~~l~~fLCs~y~P~C~~--~~~~~~PCRsl 104 (362)
.++||||++++|+|++||.|+|||++||++|+||..++++|.+|++++||+++++||||+|+|+|++ .+++++|||++
T Consensus 1 ~a~CepI~~~~C~~l~Yn~T~~PN~lgH~~q~ea~~~~~~f~pLv~~~Csp~l~~FLCS~~~P~C~~~~~~~~i~PCRsl 80 (126)
T cd07441 1 AASCEPVRIPMCKSMPWNMTKMPNHLHHSTQANAVLAIEQFEGLLGTQCSPDLLFFLCAMYAPICTIDFQHEPIKPCKSV 80 (126)
T ss_pred CCcccccChhhhCCCCcCcccCCcccCCCCHHHHHHHHHHHHHHhcCCCCccchhHHhhccCcccCCCCCCCcCCccHHH
Confidence 3789999999999999999999999999999999999999999999999999999999999999987 36899999999
Q ss_pred hHHHhhcchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCC
Q psy8156 105 CLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDN 147 (362)
Q Consensus 105 Ce~v~~~C~~~~~~~g~~WP~~l~C~~fP~~~~~~~~~C~~~~ 147 (362)
||+||++|+++|..||++||+.|+|++||+.+ +++|+.+.
T Consensus 81 Ce~vr~~C~~~m~~fg~~WP~~L~C~~fP~~~---~~~Ci~p~ 120 (126)
T cd07441 81 CERARAGCEPVLIRYRHTWPESLACEELPVYD---RGVCISPE 120 (126)
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCCcccCCCCC---CCcCcChh
Confidence 99999999999999999999999999999975 35899874
No 10
>cd07461 CRD_FZ8 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 8 (Fz8) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 8 (Fz8) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Xenopus Fz8 is important in Wnt/beta-catenin signaling pathways controlling the transcriptional activation of target genes Siamois and Xnr3 in the animal caps of late blastula.
Probab=100.00 E-value=2.5e-39 Score=273.18 Aligned_cols=121 Identities=47% Similarity=1.128 Sum_probs=114.9
Q ss_pred CCceeeeCcccccCCCCCCcccCCCCCCCcHHHHHHhhhcccccccccccccccccccccccccccC-CCcccCCcHhhh
Q psy8156 27 HAKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTI-LERAIPPCRNLC 105 (362)
Q Consensus 27 ~~~Cepi~~~~C~~l~Yn~T~~PN~~g~~tq~e~~~~l~~f~~L~~~~Cs~~l~~fLCs~y~P~C~~-~~~~~~PCRslC 105 (362)
..+|+||++++|++++||.|+|||++||++|+||..++++|.+|++++||+++++||||+|+|+|++ ..++++|||++|
T Consensus 2 ~~~C~pI~~~~C~~l~Yn~T~~PN~l~H~sq~ea~~~~~~f~pLv~~~Csp~l~~FlCSl~~P~C~~~~~~~i~PCRslC 81 (125)
T cd07461 2 ELQCQEITVPLCKGIGYNYTYMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLKFFLCSMYTPICLEDYKKPLPPCRSVC 81 (125)
T ss_pred CCcccccCHHHhCCCCCCcccCCCccCCCCHHHHHHHHHHHHHHHhCCCChhHHHHhhhccCcccCCCCCCcCCccHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999999987 568999999999
Q ss_pred HHHhhcchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCCC
Q psy8156 106 LSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNE 148 (362)
Q Consensus 106 e~v~~~C~~~~~~~g~~WP~~l~C~~fP~~~~~~~~~C~~~~~ 148 (362)
|+||++|+++|+.||++||+.|+|++||+.+++ +.+|++++.
T Consensus 82 e~vr~~C~~~m~~~g~~WP~~l~C~~fP~~~~~-~~~C~~~~~ 123 (125)
T cd07461 82 ERAKAGCAPLMRQYGFPWPDRMRCDLLPEQGNP-DTLCMDYNR 123 (125)
T ss_pred HHHHHHHHHHHHHhCCCCCCcCChhhCCCCCCC-CCccCCCCC
Confidence 999999999999999999999999999998874 689998754
No 11
>cd07458 CRD_FZ1_like Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 1. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 1 (Fz1), frizzled 2 (Fz2), and frizzled 7 (Fz7) receptors, and similar proteins. This domain is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. Very little is known about the mechanism by which CRD domains interact with their ligands. The domain contains 10 conserved cysteines.
Probab=100.00 E-value=2.8e-39 Score=270.86 Aligned_cols=118 Identities=73% Similarity=1.446 Sum_probs=112.7
Q ss_pred CceeeeCcccccCCCCCCcccCCCCCCCcHHHHHHhhhcccccccccccccccccccccccccccCCCcccCCcHhhhHH
Q psy8156 28 AKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTILERAIPPCRNLCLS 107 (362)
Q Consensus 28 ~~Cepi~~~~C~~l~Yn~T~~PN~~g~~tq~e~~~~l~~f~~L~~~~Cs~~l~~fLCs~y~P~C~~~~~~~~PCRslCe~ 107 (362)
++||||++++|+|++||.|+|||++||++|+||..++++|.+|++.+||+++++||||+|+|+|+..+++++|||++||+
T Consensus 1 ~~C~pi~~~~C~~l~Yn~T~~PN~lgh~~q~ea~~~l~~~~pLv~~~C~p~l~~FlCsl~~P~C~~~~~~i~PCRslCe~ 80 (119)
T cd07458 1 GKCEPITIPLCTDIPYNMTIFPNLLGHTKQEDAGLEVHQFYPLVKVQCSPDLKFFLCSVYAPVCTVLERPIPPCRSLCES 80 (119)
T ss_pred CccccCChHHhCCCCCCccCCCCccCCCCHHHHHHHHHHHHHHHhCCCChhHHHHhhhccccccCCCCCcCCccHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999998767899999999999
Q ss_pred HhhcchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCC
Q psy8156 108 ARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDN 147 (362)
Q Consensus 108 v~~~C~~~~~~~g~~WP~~l~C~~fP~~~~~~~~~C~~~~ 147 (362)
||++|+++|+.+|++||+.|+|++||+.++ +.+|++.+
T Consensus 81 vr~~C~~~m~~~g~~WP~~l~C~~fP~~~~--~~~C~~~~ 118 (119)
T cd07458 81 ARQGCEALMNKFGFQWPESLDCEKFPVHGA--GDLCVGEN 118 (119)
T ss_pred HHHHHHHHHHHhCCCCCCCCCcccCCCCCC--CCcCCCCC
Confidence 999999999999999999999999999875 67899764
No 12
>cd07449 CRD_FZ3 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 3 (Fz3) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 3 (Fz3) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Fz3 plays a vital role in the anterior-posterior guidance of commissural axons. Knockout mice without Fz3 show defects in fiber tracts in the rostral CNS.
Probab=100.00 E-value=5.9e-39 Score=270.55 Aligned_cols=119 Identities=45% Similarity=0.889 Sum_probs=112.7
Q ss_pred CceeeeCcccccCCCCCCcccCCCCCCCcHHHHHHhhhcccccccccccccccccccccccccccCCCcccCCcHhhhHH
Q psy8156 28 AKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTILERAIPPCRNLCLS 107 (362)
Q Consensus 28 ~~Cepi~~~~C~~l~Yn~T~~PN~~g~~tq~e~~~~l~~f~~L~~~~Cs~~l~~fLCs~y~P~C~~~~~~~~PCRslCe~ 107 (362)
-+||||++++|+|++||.|+|||++||++|+||+.++++|.+|++++||+++++||||+|+|+|++.+++++|||++||+
T Consensus 3 ~~CepI~~~~C~~l~Yn~T~~PN~lgH~~q~ea~~~~~~f~pLv~~~Csp~l~~FLCSly~P~C~~~~~~i~PCRslCe~ 82 (127)
T cd07449 3 FSCEPITLRMCQDLPYNTTFMPNLLNHYDQQTAALAMEPFHPMVNLECSRDFRPFLCALYAPVCMEYGRVTLPCRRLCQR 82 (127)
T ss_pred ceeeeCChhhhCCCCCCcccCCcccCCcCHHHHHHHHHhhcccccCCcChhhHhHhheeeccccCCCCCCCCCCHHHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999999998766789999999999
Q ss_pred HhhcchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCC
Q psy8156 108 ARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDN 147 (362)
Q Consensus 108 v~~~C~~~~~~~g~~WP~~l~C~~fP~~~~~~~~~C~~~~ 147 (362)
||++|+++|+.||++||+.|+|++||+.+++ ..+|+++.
T Consensus 83 vr~~C~~~m~~fg~~WP~~L~C~~fP~~~~~-~~~c~~~~ 121 (127)
T cd07449 83 AYSECSKLMEMFGVPWPEDMECSRFPDCDEP-YPRLVDLS 121 (127)
T ss_pred HHHHHHHHHHHhCCCCCCcCCcccCCCCCCC-cccccccc
Confidence 9999999999999999999999999998874 56899864
No 13
>cd07457 CRD_FZ9_like Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 9. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 9 (Fz9) and frizzled 10 (Fz10) receptors, and similar proteins. This domain is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. Very little is known about the mechanism by which CRD domains interact with their ligands. The domain contains 10 conserved cysteines.
Probab=100.00 E-value=5.1e-39 Score=270.26 Aligned_cols=119 Identities=46% Similarity=1.051 Sum_probs=113.1
Q ss_pred CceeeeCcccccCCCCCCcccCCCCCCCcHHHHHHhhhcccccccccccccccccccccccccccC-CCcccCCcHhhhH
Q psy8156 28 AKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTI-LERAIPPCRNLCL 106 (362)
Q Consensus 28 ~~Cepi~~~~C~~l~Yn~T~~PN~~g~~tq~e~~~~l~~f~~L~~~~Cs~~l~~fLCs~y~P~C~~-~~~~~~PCRslCe 106 (362)
++||||++++|+|++||.|.|||++||++|+||..++++|.+|++++||+++++||||+|+|+|++ .+++++|||++||
T Consensus 1 ~~CepI~~~~C~~l~Yn~T~~PN~lgh~~q~ea~~~~~~~~pLv~~~Csp~l~~FlCsl~~P~C~~~~~~~i~PCRslCe 80 (121)
T cd07457 1 GKCERITIPMCQGIGYNMTRMPNLLGHESQSEAAISIHEFAPLVQYGCAEHLRFFLCSLYAPMCTEQVSIPIPACRSMCE 80 (121)
T ss_pred CcCccCChHhhCCCCCCceeCCCcCCCcCHHHHHHHHHHHHHHHhcCCChhHHHHhhhccCcccCCCCCCcCCccHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999999999987 4679999999999
Q ss_pred HHhhcchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCC
Q psy8156 107 SARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDN 147 (362)
Q Consensus 107 ~v~~~C~~~~~~~g~~WP~~l~C~~fP~~~~~~~~~C~~~~ 147 (362)
+||++|+++|+.+|++||+.|+|++||+.+++ +.+|++++
T Consensus 81 ~vr~~C~~~m~~~g~~WP~~l~C~~fP~~~~~-~~~c~~~~ 120 (121)
T cd07457 81 QARDKCSPIMEQFSFSWPDSLDCDRLPRKNDP-KDLCMEAP 120 (121)
T ss_pred HHHHHHHHHHHHhCCCCCCcCCcccCCCCCCC-CCCcCCCC
Confidence 99999999999999999999999999999874 67899864
No 14
>cd07448 CRD_FZ4 Cysteine-rich Wnt-binding domain of the frizzled 4 (Fz4) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 4 (Fz4) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and the Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Frizzled 4 (Fz4) activates the Ca(2+)/calmodulin-dependent protein kinase II and protein kinase C of the Wnt/Ca(2+) signaling pathway during retinal angiogenesis. Mutations in Fz4 lead to familial exudative vitreoretinopathy (FEVR
Probab=100.00 E-value=8.8e-39 Score=270.63 Aligned_cols=121 Identities=44% Similarity=0.999 Sum_probs=114.7
Q ss_pred CceeeeCcccccCCCCCCcccCCCCCCCcHHHHHHhhhcccccccccccccccccccccccccccC-CCcccCCcHhhhH
Q psy8156 28 AKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTI-LERAIPPCRNLCL 106 (362)
Q Consensus 28 ~~Cepi~~~~C~~l~Yn~T~~PN~~g~~tq~e~~~~l~~f~~L~~~~Cs~~l~~fLCs~y~P~C~~-~~~~~~PCRslCe 106 (362)
++||||++++|++++||.|+|||++||++|+||..+++.|.+|++++||+++++||||+|+|+|++ .+++++|||++||
T Consensus 2 ~~Cepi~~~~C~~l~Yn~T~~PN~lgh~sq~ea~~~l~~~~pLv~~~Csp~l~~flCsl~~P~C~~~~~~~i~PCRslCe 81 (126)
T cd07448 2 RRCEPIRIEMCQGLGYNVTRMPNLVGHELQTDAELQLQTFTPLIQYGCSSQLKFFLCSVYVPMCTEKVPVPIGPCRPLCL 81 (126)
T ss_pred CeeeeCCHHHhCCCCcccccCCCcCCCcCHHHHHHHHHHHHHHhhcCCChhHHhHhhhccccccCCCCCCcCCcCHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999987 5679999999999
Q ss_pred HHhhcchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCCCC
Q psy8156 107 SARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNEE 149 (362)
Q Consensus 107 ~v~~~C~~~~~~~g~~WP~~l~C~~fP~~~~~~~~~C~~~~~~ 149 (362)
+||++|+++|+.+|++||++|+|++||+.++. +.+|+.++.+
T Consensus 82 ~vr~~C~~~m~~~g~~WP~~l~C~~fP~~~~~-~~~C~~~~~~ 123 (126)
T cd07448 82 SVKKRCLPVLKEFGFPWPEALNCSKFPPQNNH-NHMCMEGPGD 123 (126)
T ss_pred HHHHHHHHHHHHhCCCCCCcCCcccCCCCCCC-CCccCCCCCc
Confidence 99999999999999999999999999998863 6799988654
No 15
>cd07454 CRD_LIN_17 Cysteine-rich domain (CRD) of LIN_17. A cysteine-rich domain (CRD) is an essential component of a number of cell surface receptors, which are involved in multiple signal transduction pathways, particularly in modulating the activity of the Wnt proteins, which play a fundamental role in the early development of metazoans. CRD is also found in secreted frizzled related proteins (SFRPs), which lack the transmembrane segment found in the frizzled protein. The CRD domain is also present in the alpha-1 chain of mouse type XVIII collagen, in carboxypeptidase Z, several receptor tyrosine kinases, and the mosaic transmembrane serine protease corin. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. CRD domains have also been identified in multiple tandem copies in a Dictyostelium discoideum protein. Very little is known about the mechanism by which CRD domains interact with the
Probab=100.00 E-value=9.9e-39 Score=269.23 Aligned_cols=119 Identities=36% Similarity=0.931 Sum_probs=112.2
Q ss_pred CCceeeeCcccccCCCCCCcccCCCCCCCcHHHHHHhhhcccccccccccccccccccccccccccC-CCcccCCcHhhh
Q psy8156 27 HAKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTI-LERAIPPCRNLC 105 (362)
Q Consensus 27 ~~~Cepi~~~~C~~l~Yn~T~~PN~~g~~tq~e~~~~l~~f~~L~~~~Cs~~l~~fLCs~y~P~C~~-~~~~~~PCRslC 105 (362)
.++|+||++++|+|++||.|+|||++||++|+||..+++.|.+|++++||+++++||||+|+|+|++ ..++++|||++|
T Consensus 2 ~~~C~Pi~~~~C~~l~Yn~T~~PN~lgh~~q~ea~~~~~~f~pLv~~~C~p~l~~FlCsl~~P~C~~~~~~~i~PCRslC 81 (124)
T cd07454 2 KGKCIPIDIELCKDLPYNYTYFPNTILHNDQHTLQTHTEHFKPLMKTKCHPHIHFFICSVFAPMCPIGMPQAVTSCKSVC 81 (124)
T ss_pred CCccccCChhhhCCCCcCcccCCcccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHhhcccccccCCCCCCcCCCChhHH
Confidence 5799999999999999999999999999999999999999999999999999999999999999987 567899999999
Q ss_pred HHHhhcchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCCCC
Q psy8156 106 LSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNEE 149 (362)
Q Consensus 106 e~v~~~C~~~~~~~g~~WP~~l~C~~fP~~~~~~~~~C~~~~~~ 149 (362)
|+||++|+++|..||++||+.|+|++||+. +++|+++..+
T Consensus 82 e~vr~~C~~~m~~fg~~WP~~l~C~~fP~~----~~~C~~p~~~ 121 (124)
T cd07454 82 EQVKADCFSILEEFGIGWPEPLNCAQFPDP----PELCMKPTED 121 (124)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCChhhCCCC----CCCCCCcchh
Confidence 999999999999999999999999999986 3589998543
No 16
>cd07456 CRD_FZ5_like Cysteine-rich Wnt-binding domain (CRD) of receptors similar to frizzled 5. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 5 (Fz5) and frizzled 8 (Fz8) receptors, and similar proteins. This domain is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. Very little is known about the mechanism by which CRD domains interact with their ligands. The domain contains 10 conserved cysteines.
Probab=100.00 E-value=1.3e-38 Score=267.50 Aligned_cols=118 Identities=53% Similarity=1.194 Sum_probs=112.6
Q ss_pred ceeeeCcccccCCCCCCcccCCCCCCCcHHHHHHhhhcccccccccccccccccccccccccccC-CCcccCCcHhhhHH
Q psy8156 29 KCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTI-LERAIPPCRNLCLS 107 (362)
Q Consensus 29 ~Cepi~~~~C~~l~Yn~T~~PN~~g~~tq~e~~~~l~~f~~L~~~~Cs~~l~~fLCs~y~P~C~~-~~~~~~PCRslCe~ 107 (362)
+||||++++|+|++||.|+|||++||++|+||..++++|.+|++++||+++++||||+|+|+|++ .+++++|||++||+
T Consensus 1 ~Cepi~~~~C~~l~Yn~T~~PN~lgh~~q~ea~~~~~~~~pLv~~~Csp~l~~FlCsl~~P~C~~~~~~~i~PCRslCe~ 80 (120)
T cd07456 1 KCEEITIPMCKGIGYNMTYMPNQFNHDTQEEAGLEVHQFWPLVEIQCSPDLKFFLCSMYTPICLEDYDKPLPPCRSVCER 80 (120)
T ss_pred CccccChhhhCCCCCCcccCCCcCCCcCHHHHHHHHHHHHHHHhCCCChhHHHHhHhccCcccCCCCCCcCCccHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999987 56899999999999
Q ss_pred HhhcchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCC
Q psy8156 108 ARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDN 147 (362)
Q Consensus 108 v~~~C~~~~~~~g~~WP~~l~C~~fP~~~~~~~~~C~~~~ 147 (362)
||++|+++|+.+|++||+.++|++||+.++. +.+|++++
T Consensus 81 vr~~C~~~m~~~g~~WP~~l~C~~fP~~~~~-~~~C~~~~ 119 (120)
T cd07456 81 ARDGCAPIMRQYGFAWPERMSCDALPEGGDP-DNLCMDRN 119 (120)
T ss_pred HHHHHHHHHHHhCCCCCCcCChhhCCCCCCC-CCccCCCC
Confidence 9999999999999999999999999999874 77899764
No 17
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=100.00 E-value=1.5e-37 Score=302.50 Aligned_cols=119 Identities=47% Similarity=1.031 Sum_probs=109.9
Q ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhhcC-CccccCC-CCC
Q psy8156 234 MFFSEKEKKMSRLWVGIWSALCATSCLFTVLTFMIDSDRFRYPERPIIFLSVCYLMVSITYIIGFMSG-DKISCTK-PFS 311 (362)
Q Consensus 234 ~~ft~~e~~~~~~w~~v~s~lc~i~TlftvlTF~id~~rf~YPerpIifls~Cy~~~Sl~~li~~~~~-~~iaC~~-~~~ 311 (362)
|+||++||++++.|+++||++|+++|+||++||+||++|||||||||+|+++||+++|+||++|++.| |+++|++ ++.
T Consensus 1 p~ft~~e~~~~~~wi~~~s~ic~~~t~ftv~Tf~id~~rf~yPerpi~fl~~Cy~~~s~~~l~~~~~g~~~i~C~~~~~~ 80 (328)
T PF01534_consen 1 PFFTQEEKEFARIWIGVWSVICFISTLFTVLTFLIDRSRFRYPERPIIFLSFCYFIVSLGYLIRFILGRESIACRSQDGT 80 (328)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCccchhhHHHHHHHHHHHHHHHHHhccCCCcCCCcCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999985 9999998 432
Q ss_pred CCCCCCcccceeeeecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy8156 312 PPPEHPHLAMVSTITQGTRQEACTILFMILYFFGMASSIWDVFVMASTTI 361 (362)
Q Consensus 312 ~~~~~~~~~~~~~~~~g~~~~~C~i~F~l~Yff~mAa~iWWviLt~tW~~ 361 (362)
. ....++|.++..|+++|+++|||+|||++|||||++||++
T Consensus 81 ~---------~~~~~~~~~~~~C~~~F~l~Yyf~mAa~~WWviLt~~W~l 121 (328)
T PF01534_consen 81 E---------RILVQDGLENSSCTVVFLLLYYFGMAASLWWVILTLTWFL 121 (328)
T ss_pred c---------eeEeecCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 1 2344567789999999999999999999999999999986
No 18
>cd07888 CRD_corin_2 One of two cysteine-rich domains of the corin protein, a type II transmembrane serine protease . The cysteine-rich domain (CRD) is an essential component of corin, a type II transmembrane serine protease which functions as the convertase of the pro-atrial natriuretic peptide (pro-ANP) in the heart. Corin contains two CRDs in its extracellular region, which play an important role in recognition of the physiological substrate, pro-ANP. This model characterizes the second (C-terminal) CRD.
Probab=100.00 E-value=5.1e-38 Score=264.41 Aligned_cols=118 Identities=37% Similarity=0.866 Sum_probs=109.9
Q ss_pred ceeeeCcccccCCCCCCcccCCCCCCCcHHHHHH--hhhcccccccccccccccccccccccccccC-CCcccCCcHhhh
Q psy8156 29 KCETITIPFCQDIAYNETIMPNLLGHSKQEDAGF--EVHQYFPLVKVKCSPDLQFFLCSMYAPVCTI-LERAIPPCRNLC 105 (362)
Q Consensus 29 ~Cepi~~~~C~~l~Yn~T~~PN~~g~~tq~e~~~--~l~~f~~L~~~~Cs~~l~~fLCs~y~P~C~~-~~~~~~PCRslC 105 (362)
+||||++++|++++||.|.|||++||++|+||+. ++++|.+|++++||+++++||||+|+|+|+. .+++++|||++|
T Consensus 1 ~CepI~~~~C~~l~Yn~T~~PN~lgH~sq~ea~~~~~~~~f~pLv~~~Csp~l~~FlCsl~~P~C~~~~~~~i~PCRslC 80 (122)
T cd07888 1 QCEPITLELCMNLPYNTTRYPNYLGHRTQKEASISWESSLFPALVQTNCYKYLMFFACTILVPKCDPVTQQRIPPCRSLC 80 (122)
T ss_pred CCccCCHhhhCCCCcCcccCCcccCCCCHHHHHHhhhHHHHHhHHhcCCChhHHHHHHhccCccccCCCCCCCCCcHHHH
Confidence 5999999999999999999999999999999976 4669999999999999999999999999986 568999999999
Q ss_pred HHHhhcchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCC
Q psy8156 106 LSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDN 147 (362)
Q Consensus 106 e~v~~~C~~~~~~~g~~WP~~l~C~~fP~~~~~~~~~C~~~~ 147 (362)
|+||++|+++|..||+.||+.|+|++||+.++. +.+|+.+.
T Consensus 81 e~vr~~C~~~m~~fg~~WP~~l~C~~fP~~~~~-~~~C~~p~ 121 (122)
T cd07888 81 RNSKERCESVLGIVGLQWPEDTDCAQFPEENSD-NQTCLLPD 121 (122)
T ss_pred HHHHHHHHHHHHHhCCCCCCcCccccCCCCCCC-CCcCCCCC
Confidence 999999999999999999999999999998753 67899863
No 19
>cd07445 CRD_corin_1 One of two cysteine-rich domains of the corin protein, a type II transmembrane serine protease . The cysteine-rich domain (CRD) is an essential component of corin, a type II transmembrane serine protease which functions as the convertase of the pro-atrial natriuretic peptide (pro-ANP) in the heart. Corin contains two CRDs in its extracellular region, which play an important role in recognition of the physiological substrate, pro-ANP. This model characterizes the first (N-terminal) CRD.
Probab=100.00 E-value=9e-38 Score=263.29 Aligned_cols=119 Identities=27% Similarity=0.610 Sum_probs=108.5
Q ss_pred CCceeeeCcccccCCCCCCcccCCCCCCCcHHHHHHhhhcccccccccccccccccccccccccccCC---CcccCCcHh
Q psy8156 27 HAKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTIL---ERAIPPCRN 103 (362)
Q Consensus 27 ~~~Cepi~~~~C~~l~Yn~T~~PN~~g~~tq~e~~~~l~~f~~L~~~~Cs~~l~~fLCs~y~P~C~~~---~~~~~PCRs 103 (362)
+++||||++++|++++||.|.|||++||++ +||+.++++|.+|++.+||+++++||||+|+|+|++. ..+++|||+
T Consensus 2 ~~~CepI~i~~C~~l~YN~T~~PN~lgh~~-~ea~~~l~~f~pLv~~~Csp~l~~FLCSlyaP~C~~~~~~~~~i~PCRs 80 (130)
T cd07445 2 TSACMNITHSQCQMLPYHSTLKPSLLSVKN-MEMEKFLKFFSYLHRLSCYQHIMLFGCSLALPECISDGDDRHGLLPCRS 80 (130)
T ss_pred CCccccCChhhhCCCCCccccCCccccccC-HHHHHHHHhhccccccCcChhhHHHhhhccCccccCCCCCCCcCCCCHH
Confidence 579999999999999999999999999987 5888899999999999999999999999999999873 358999999
Q ss_pred hhHHHhhcchhhhhhcCCCCCCCcCCCCCCCCCCC--C-CCCccCC
Q psy8156 104 LCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSG--P-DSLCVGD 146 (362)
Q Consensus 104 lCe~v~~~C~~~~~~~g~~WP~~l~C~~fP~~~~~--~-~~~C~~~ 146 (362)
+||+||++|+++|+.||++||+.|+|++||+.++. | .+.|+++
T Consensus 81 lCe~vr~~C~~~m~~fg~~WPe~L~C~~fP~~~~~~~~~~~~c~~~ 126 (130)
T cd07445 81 FCEAAKEGCEPVLGMVNASWPDFLRCSQFRNNTETAVENRALCFSP 126 (130)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcCCccccCCCCCCcccccccccCh
Confidence 99999999999999999999999999999998763 1 3466665
No 20
>cd07450 CRD_FZ6 Cysteine-rich Wnt-binding domain (CRD) of the frizzled 6 (Fz6) receptor. The cysteine-rich domain (CRD) is an essential extracellular portion of the frizzled 6 (Fz6) receptor, and is required for binding Wnt proteins, which play fundamental roles in many aspects of early development, such as cell and tissue polarity, neural synapse formation, and the regulation of proliferation. Fz proteins serve as Wnt receptors for multiple signal transduction pathways, including both beta-catenin dependent and -independent cellular signaling, as well as the planar cell polarity pathway and Ca(2+) modulating signaling pathway. CRD containing Fzs have been found in diverse species from amoebas to mammals. 10 different frizzled proteins are found in vertebrata. Frizzled 6 (Fz6) is expressed in the skin and hair follicles and controls hair patterning in mammals using a Fz-dependent tissue polarity system, which is similar to the one that patterns the Drosophila cuticle.
Probab=100.00 E-value=1.4e-37 Score=262.50 Aligned_cols=110 Identities=39% Similarity=0.934 Sum_probs=105.6
Q ss_pred CceeeeCcccccCCCCCCcccCCCCCCCcHHHHHHhhhcccccccccccccccccccccccccccCCCcccCCcHhhhHH
Q psy8156 28 AKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTILERAIPPCRNLCLS 107 (362)
Q Consensus 28 ~~Cepi~~~~C~~l~Yn~T~~PN~~g~~tq~e~~~~l~~f~~L~~~~Cs~~l~~fLCs~y~P~C~~~~~~~~PCRslCe~ 107 (362)
-+||||++++|+|++||.|+|||++||++|+||..+++.|.+|++++||+++++||||+|+|+|++..++++|||++||+
T Consensus 3 ~~CepI~~~~C~~l~YN~T~~PN~lgH~~q~ea~~~~~~f~pLv~~~Csp~l~~FLCS~~~P~C~~~~~~i~PCRslCe~ 82 (127)
T cd07450 3 FTCEPITVPRCLKMPYNMTFFPNLMGHYDQDIAAVEMEPFLPLANLRCSPNVHTFLCQAFVPTCTEQIHVVRPCRELCEK 82 (127)
T ss_pred ceeeeCChhhcCCCCCCcccCCcccCCcCHHHHHHHHHHHHhHhccCCChhhhhheeeeecccccCCCCcCCCCHHHHHH
Confidence 37999999999999999999999999999999999999999999999999999999999999998755788999999999
Q ss_pred HhhcchhhhhhcCCCCCCCcCCCCCCCCCC
Q psy8156 108 ARNGCEKLMNDFGFQWPETFECSKFPLPSS 137 (362)
Q Consensus 108 v~~~C~~~~~~~g~~WP~~l~C~~fP~~~~ 137 (362)
||++|+++|..+|++||+.|+|++||..++
T Consensus 83 vr~~C~~~m~~fg~~WP~~L~C~~fP~~~~ 112 (127)
T cd07450 83 VYSDCKKLIDTFGISWPEELECDRLQYCDE 112 (127)
T ss_pred HHHHHHHHHHHhCCCCCCcCCcccCCCCCC
Confidence 999999999999999999999999998765
No 21
>cd07446 CRD_SFRP2 Cysteine-rich domain of the secreted frizzled-related protein 2 (SFRP2), a regulator of Wnt activity. The cysteine-rich-domain (CRD) is an essential part of the secreted frizzled related protein 2 (SFRP2), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to CRD domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs. As a Wnt antagonist, SFRP2 regulates Nkx2.2 expression in the ventral spinal cord and anteroposterior axis elongation. SFRP2 also has a Wnt-independent function as an enhancer of procollagen cleavage by the TLD proteinases. SFRP2 binds both procollagen and TLD, thus facilitating the enzymatic reaction by bringing togeth
Probab=100.00 E-value=2.3e-37 Score=262.14 Aligned_cols=119 Identities=39% Similarity=0.986 Sum_probs=111.7
Q ss_pred CCceeeeC--cccccCCCCCCcccCCCCCCCcHHHHHHhhhcccccccccccccccccccccccccccC-CCcccCCcHh
Q psy8156 27 HAKCETIT--IPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTI-LERAIPPCRN 103 (362)
Q Consensus 27 ~~~Cepi~--~~~C~~l~Yn~T~~PN~~g~~tq~e~~~~l~~f~~L~~~~Cs~~l~~fLCs~y~P~C~~-~~~~~~PCRs 103 (362)
.++|+||+ +++|+|++||.|+|||++||++|+||..++++|.+|++++||+++++||||+|+|+|++ .+++++|||+
T Consensus 2 ~s~C~pI~~~l~~C~~l~Yn~T~~PN~lgH~sq~ea~~~~~~~~pLv~~~C~p~l~~FlCSl~~P~C~~~~~~~i~PCRs 81 (128)
T cd07446 2 KSNCKPIPANMLLCHGIEYTNMRLPNLLGHETMKEVLQQAGSWIPLVQKQCHPDTKKFLCSLFAPVCLDDLDEAIQPCRS 81 (128)
T ss_pred CCCceECCCCchhhcCCCCCcccCCcccCCCCHHHHHHHHHHHHHHHhcCCChhhHHHhhhccCccccCCCCCcCCccHH
Confidence 57999998 88999999999999999999999999999999999999999999999999999999986 5789999999
Q ss_pred hhHHHhhcchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCCCC
Q psy8156 104 LCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNEE 149 (362)
Q Consensus 104 lCe~v~~~C~~~~~~~g~~WP~~l~C~~fP~~~~~~~~~C~~~~~~ 149 (362)
+||+||++|+++|..+|++||+.|+|++||+. +++|+.+.+.
T Consensus 82 lCe~vr~~C~~~m~~~g~~WP~~l~C~~fP~~----~~~Ci~~~~~ 123 (128)
T cd07446 82 LCEAVKDGCAPVMSAFGFPWPDMLDCTRFPLD----NDLCIPPAGS 123 (128)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCcccCCCC----CCcccCcccc
Confidence 99999999999999999999999999999986 3589977533
No 22
>cd07443 CRD_SFRP1 Cysteine-rich domain of the secreted frizzled-related protein 1 (SFRP1), a regulator of Wnt activity. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related protein 1 (SFRP1), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to the CRDs domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs. SFRP1 is expressed in many tissues and is involved in the regulation of Wnt signaling in osteoblasts, leading to enhanced trabecular bone formation in adults; it has also been shown to control the gro
Probab=100.00 E-value=7.1e-37 Score=257.37 Aligned_cols=117 Identities=36% Similarity=0.894 Sum_probs=109.9
Q ss_pred CCCCceeeeC--cccccCCCCCCcccCCCCCCCcHHHHHHhhhcccccccccccccccccccccccccccCCCcccCCcH
Q psy8156 25 PIHAKCETIT--IPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTILERAIPPCR 102 (362)
Q Consensus 25 ~~~~~Cepi~--~~~C~~l~Yn~T~~PN~~g~~tq~e~~~~l~~f~~L~~~~Cs~~l~~fLCs~y~P~C~~~~~~~~PCR 102 (362)
...++|+||+ +++|+|++||.|+|||++||++|+||..++.+|.+|++++||+++++||||+|+|+|. +++++|||
T Consensus 2 ~~~~~C~pIp~~l~~C~~l~Yn~T~~PN~lgH~sq~ea~~~~~~~~pLv~~~C~p~l~~FlCsl~~P~C~--~~~i~PCR 79 (124)
T cd07443 2 TKPPQCVDIPADLRLCHNVGYKKMVLPNLLDHETMAEVKQQASSWVPLLNKNCHKGTQVFLCSLFAPVCL--DRPVYPCR 79 (124)
T ss_pred CCCCCceECCCchhhhcCCCCCceeCccccCCCCHHHHHHHHHHHHHHHhccccHHHHHHhhheeccCCC--CCCCCCCH
Confidence 3568999998 8999999999999999999999999999999999999999999999999999999997 47899999
Q ss_pred hhhHHHhhcchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCCC
Q psy8156 103 NLCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNE 148 (362)
Q Consensus 103 slCe~v~~~C~~~~~~~g~~WP~~l~C~~fP~~~~~~~~~C~~~~~ 148 (362)
++||+||++|+++|.+||+.||+.|+|++||+. ++|+....
T Consensus 80 slCe~vr~~C~~~m~~~g~~WP~~L~C~~fP~~-----~~ci~~~~ 120 (124)
T cd07443 80 WLCEAVRDSCEPVMQFFGFYWPEMLKCDKFPEG-----EVCIAMTP 120 (124)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCcccCCCC-----CCccCCCC
Confidence 999999999999999999999999999999974 36998754
No 23
>cd07444 CRD_SFRP5 Cysteine-rich domain of the secreted frizzled-related protein 5 (SFRP5), a regulator of Wnt activity. The cysteine-rich domain (CRD) is an essential part of the secreted frizzled-related Protein 5 (SFRP5), which regulates the activity of Wnt proteins, key players in a number of fundamental cellular processes such as embryogenesis and postnatal development. SFRPs antagonize the activation of Wnt signaling by binding to the CRD domains of frizzled (Fz) proteins, thereby preventing Wnt proteins from binding to these receptors. SFRPs are also known to have functions unrelated to Wnt, as enhancers of procollagen cleavage by the TLD proteinases. SFRPs and Fz proteins both contain CRD domains, but SFRPs lack the seven-pass transmembrane domain which is an integral part of Fzs.
Probab=100.00 E-value=6.7e-37 Score=258.54 Aligned_cols=118 Identities=38% Similarity=0.951 Sum_probs=110.5
Q ss_pred CCCCceeeeC--cccccCCCCCCcccCCCCCCCcHHHHHHhhhcccccccccccccccccccccccccccCCCcccCCcH
Q psy8156 25 PIHAKCETIT--IPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTILERAIPPCR 102 (362)
Q Consensus 25 ~~~~~Cepi~--~~~C~~l~Yn~T~~PN~~g~~tq~e~~~~l~~f~~L~~~~Cs~~l~~fLCs~y~P~C~~~~~~~~PCR 102 (362)
.+.++|+||+ +++|+|++||.|+|||++||++|+||..++++|.+|++++||+++++||||+|+|+|. +++++|||
T Consensus 2 ~~~~~C~pIp~~l~~C~~l~Yn~T~~PN~lgH~~q~ea~~~~~~~~pLv~~~C~p~l~~FlCSl~~P~C~--~~~i~PCR 79 (127)
T cd07444 2 SKQPQCVDIPADLPLCHNVGYKRMRLPNLLEHESMAEVKQQASSWVPLLAKRCHADTQVFLCSLFAPVCL--DRPIYPCR 79 (127)
T ss_pred CCCCCceECCCCchhhcCCCCCceeCCcccCCCCHHHHHHHHHHHHHHHhcccCHHHHHHhhhhcCCCCC--CCCCCCcH
Confidence 3568999998 8999999999999999999999999999999999999999999999999999999997 47899999
Q ss_pred hhhHHHhhcchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCCC
Q psy8156 103 NLCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNE 148 (362)
Q Consensus 103 slCe~v~~~C~~~~~~~g~~WP~~l~C~~fP~~~~~~~~~C~~~~~ 148 (362)
++||+||++|+++|+.||++||+.|+|++||+.+ ++|+....
T Consensus 80 slCe~vr~~C~~~m~~~g~~WP~~l~C~~fP~~~----~~C~~~~~ 121 (127)
T cd07444 80 SLCEAVRDSCAPVMESYGFPWPEMLHCHKFPLDN----DLCIAVQF 121 (127)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCChhhCCCCC----Cccccccc
Confidence 9999999999999999999999999999999863 48998643
No 24
>cd07447 CRD_Carboxypeptidase_Z Cysteine-rich domain of carboxypeptidase Z, a member of the carboxypeptidase E family. The cysteine-rich-domain (CRD) is an essential part of carboxypeptidase Z, a member of the carboxypeptidase E family of metallocarboxypeptidases. This is a group of Zn-dependent enzymes implicated in the intra- and extracellular processing of proteins. Carboxypeptidase Z removes C-terminal basic amino acid residues from its substrates, particularly arginine. The CRD acts as a ligand-binding domain for Wnts involved in developmental processes. CPZ binds and may process Wnt-4, CPZ has also been found to enhance the induction of the homeobox gene Cdx1. During vertebrate embryogenesis, the CRD of CPZ upregulates Pax3, a Wnt reporter gene essential for patterning of somites and limb development.
Probab=100.00 E-value=6.5e-37 Score=259.16 Aligned_cols=115 Identities=30% Similarity=0.752 Sum_probs=106.7
Q ss_pred CceeeeCcccccCCCCCCcccCCCCCCCcHHHHHH--h---hhcccccccccccccccccccccccccccCCCcccCCcH
Q psy8156 28 AKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGF--E---VHQYFPLVKVKCSPDLQFFLCSMYAPVCTILERAIPPCR 102 (362)
Q Consensus 28 ~~Cepi~~~~C~~l~Yn~T~~PN~~g~~tq~e~~~--~---l~~f~~L~~~~Cs~~l~~fLCs~y~P~C~~~~~~~~PCR 102 (362)
++||||++++|+|++||.|+|||++||++|++++. + +++|.+|++++||+++++||||+|+|+|++ +++++|||
T Consensus 2 ~~CepI~~~~C~~l~Yn~T~~PN~lgH~sq~~~~~~~~~~~l~~f~pLv~~~C~p~l~~FLCSl~~P~C~~-~~~i~PCR 80 (128)
T cd07447 2 ATCTDLLLSYCSDVSYTQTTFPNLLGHRSREVTEAGAEYLLLSVLHGLLGGECNPDIRLLGCSVLAPRCEN-DKVIKPCR 80 (128)
T ss_pred CcccCCChhhcCCCCCCcccCCcccCCCCHHHHHhhhhHhHHHHHhhhhhcCcChhHHhHhhcccccccCC-CCccCCCH
Confidence 68999999999999999999999999999997653 2 789999999999999999999999999986 67999999
Q ss_pred hhhHHHhhcchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCC
Q psy8156 103 NLCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGD 146 (362)
Q Consensus 103 slCe~v~~~C~~~~~~~g~~WP~~l~C~~fP~~~~~~~~~C~~~ 146 (362)
++||+||++|+++|..||+.||++|+|++||... .+.|+.+
T Consensus 81 slCe~vr~~C~~~m~~fg~~WP~~L~C~~fP~~~---~~~c~~~ 121 (128)
T cd07447 81 STCEALRKRCSHAFDAIQMAWPYFLDCDRFFAGE---QEGCYDP 121 (128)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCcCccccCCCcc---CCCccCh
Confidence 9999999999999999999999999999999764 3568876
No 25
>cd07452 CRD_sizzled Cysteine-rich domain of the sizzled protein. The cysteine-rich domain (CRD) is an essential part of the sizzled protein, which regulates bone morphogenetic protein (Bmp) signaling by stabilizing chordin, and plays a critical role in the patterning of vertebrate and invertebrate embryos. Sizzled also functions in the ventral region as a Wnt inhibitor and modulates canonical Wnt signaling. Sizzled proteins belong to the secreted frizzled-related protein family (SFRP), and have be identified in the genomes of birds, fishes and frogs, but not mammals.
Probab=100.00 E-value=2.3e-36 Score=258.88 Aligned_cols=120 Identities=33% Similarity=0.859 Sum_probs=112.0
Q ss_pred CCCCCceeeeC--cccccCCCCCCcccCCCCCCCcHHHHHHhhhcccccccccccccccccccccccccccCCCcccCCc
Q psy8156 24 LPIHAKCETIT--IPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTILERAIPPC 101 (362)
Q Consensus 24 ~~~~~~Cepi~--~~~C~~l~Yn~T~~PN~~g~~tq~e~~~~l~~f~~L~~~~Cs~~l~~fLCs~y~P~C~~~~~~~~PC 101 (362)
....++|+||+ +++|++++||.|+|||++||++|+||..++.+|.+|++++||+++++||||+|+|+|.+ ++++||
T Consensus 3 ~~~s~~C~pIp~~l~~C~~l~Yn~T~~PN~lgH~sq~ea~~~~~~f~pLv~~~C~p~l~~FlCSl~~P~C~~--~~i~PC 80 (141)
T cd07452 3 IGLSTKCVPIPPEMSMCQDVGYSEMRLPNLLGHTSMAEVVPKSADWQTLLHTGCHPHARTFLCSLFAPVCLD--TFIQPC 80 (141)
T ss_pred CCCCCcceeCCCcchhhcCCCCCcccCCcccCCCCHHHHHHHHHHHHHHHhcCCCHHHHHHhHhhcccCCCC--CCCcCC
Confidence 35568999997 89999999999999999999999999999999999999999999999999999999984 689999
Q ss_pred HhhhHHHhhcchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCCCC
Q psy8156 102 RNLCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNEE 149 (362)
Q Consensus 102 RslCe~v~~~C~~~~~~~g~~WP~~l~C~~fP~~~~~~~~~C~~~~~~ 149 (362)
|++||+||++|+++|..||+.||++|+|++||+.+ ++|+++..+
T Consensus 81 RslCe~vr~~C~~~m~~fg~~WP~~L~C~~fP~~~----~~C~~~~~~ 124 (141)
T cd07452 81 RSMCVAVRDSCAPVLACHGHSWPESLDCDRFPAGE----DMCLASLSK 124 (141)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCCcccCCCCC----CccCCCCcc
Confidence 99999999999999999999999999999999863 589998554
No 26
>smart00063 FRI Frizzled. Drosophila melanogaster frizzled mediates signalling that polarises a precursor cell along the anteroposterior axis. Homologues of the N-terminal region of frizzled exist either as transmembrane or secreted molecules. Frizzled homologues are reported to be receptors for the Wnt growth factors. (Not yet in MEDLINE: the FRI domain occurs in several receptor tyrosine kinases [Xu, Y.K. and Nusse, Curr. Biol. 8 R405-R406 (1998); Masiakowski, P. and Yanopoulos, G.D., Curr. Biol. 8, R407 (1998)].
Probab=100.00 E-value=2.9e-36 Score=251.30 Aligned_cols=113 Identities=59% Similarity=1.250 Sum_probs=106.8
Q ss_pred eeeeCcccccCCCCCCcccCCCCCCCcHHHHHHhhhcccccccccccccccccccccccccccCCCcccCCcHhhhHHHh
Q psy8156 30 CETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTILERAIPPCRNLCLSAR 109 (362)
Q Consensus 30 Cepi~~~~C~~l~Yn~T~~PN~~g~~tq~e~~~~l~~f~~L~~~~Cs~~l~~fLCs~y~P~C~~~~~~~~PCRslCe~v~ 109 (362)
|+||++++|+|++||.|+|||++||++|+||..+++.|.+|++++||+++++||||+|+|+|++...+++|||++||+||
T Consensus 1 C~pi~~~~C~~l~Yn~T~~PN~l~h~~q~ea~~~l~~~~~L~~~~C~p~l~~flCsl~~P~C~~~~~~~~PCRs~Ce~vr 80 (113)
T smart00063 1 CEPITIPLCKDLGYNLTSMPNLLGHTTQEEAGLELEQFHPLLNVQCSPDLRFFLCSVYAPICTEDLRPILPCRSLCEAAR 80 (113)
T ss_pred CcCCCcHhHCCCCcccccCCCccCCCCHHHHHHHHHHHHhhccCCCChhHHHHhHhccCcccCCCCCcCCcCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999974447999999999999
Q ss_pred hcchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCC
Q psy8156 110 NGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGD 146 (362)
Q Consensus 110 ~~C~~~~~~~g~~WP~~l~C~~fP~~~~~~~~~C~~~ 146 (362)
++|+++|..+|+.||++|+|++||+.+ ++|+++
T Consensus 81 ~~C~~~~~~~g~~WP~~l~C~~fP~~~----~~C~~~ 113 (113)
T smart00063 81 EGCEPLMEKFGFPWPEFLRCDRFPVQE----ELCMDP 113 (113)
T ss_pred HHHHHHHHHhCCCCCCcCCcccCCCCC----CCCCCc
Confidence 999999999999999999999999874 478753
No 27
>cd07453 CRD_crescent Cysteine-rich domain of the crescent protein. The cysteine-rich domain (CRD) is an essential part of the crescent protein, a member of the secreted frizzled-related protein (SFRP) family, which regulates convergent extension movements (CEMs) during gastrulation and neurulation. Xenopus laevis crescent efficiently forms inhibitory complexes with Wnt5a and Wnt11, but this effect is cancelled in the presence of another member of the SFRP family, Frzb1. A potential role for Crescent in head formation is to regulate a non-canonical Wnt pathway positively in the adjacent posterior mesoderm, and negatively in the overlying anterior neuroectoderm.
Probab=100.00 E-value=3.9e-36 Score=255.98 Aligned_cols=115 Identities=39% Similarity=0.945 Sum_probs=108.3
Q ss_pred CceeeeC--cccccCCCCCCcccCCCCCCCcHHHHHHhhhcccccccccccccccccccccccccccCCCcccCCcHhhh
Q psy8156 28 AKCETIT--IPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTILERAIPPCRNLC 105 (362)
Q Consensus 28 ~~Cepi~--~~~C~~l~Yn~T~~PN~~g~~tq~e~~~~l~~f~~L~~~~Cs~~l~~fLCs~y~P~C~~~~~~~~PCRslC 105 (362)
.+|++|. +++|+|++||.|+|||++||++|+||..+++.|.+|++++||+++++||||+|+|+|+ +++++|||++|
T Consensus 1 ~~C~~iP~~l~~C~~l~Yn~T~~PN~lgH~sq~ea~~~~~~~~pLv~~~C~p~l~~FLCSl~~P~C~--~~~i~PCRslC 78 (135)
T cd07453 1 SPCMRIPKSMALCYDIGYSEMRIPNLLEHETMAEVIQQSSSWLPLLARECHPDARIFLCSLFAPICW--DRPIYPCRSLC 78 (135)
T ss_pred CCCccCCCcchhhCCCCCCcccCCcccCCCCHHHHHHHHHHHHHHHhcCCChhhHHHhhhhcCccCC--CCCCCccHHHH
Confidence 4799887 7899999999999999999999999999999999999999999999999999999998 68999999999
Q ss_pred HHHhhcchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCCC
Q psy8156 106 LSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDNE 148 (362)
Q Consensus 106 e~v~~~C~~~~~~~g~~WP~~l~C~~fP~~~~~~~~~C~~~~~ 148 (362)
|+||++|+++|+.||+.||+.|+|++||+. +++|+++..
T Consensus 79 e~vr~~C~~~m~~~g~~WP~~l~C~~fP~~----~~~Ci~p~~ 117 (135)
T cd07453 79 EAVRSSCAPLMACYGYPWPEILHCDKFPVD----HDLCISPQF 117 (135)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCChhhCCCC----CCcccCCCC
Confidence 999999999999999999999999999985 358998754
No 28
>cd07451 CRD_SMO Cysteine-rich domain of the smoothened receptor (Smo) integral membrane protein. The cysteine-rich domain (CRD) is part of the smoothened receptor (Smo), an integral membrane protein and one of the key players in the Hedgehog (Hh) signaling pathway, critical for development, cell growth and migration, as well as stem cell maintenance. The CRD of Smo is conserved in vertebrates and can also be identified in invertebrates. The precise function of the CRD in Smo is unknown. Mutations in the Drosophila CRD disrupt Smo activity in vivo, while deletion of the CRD in mammalian cells does not seem to affect the activity of overexpressed Smo.
Probab=100.00 E-value=3.4e-34 Score=243.18 Aligned_cols=113 Identities=27% Similarity=0.585 Sum_probs=105.8
Q ss_pred CCceeeeCcccccC--CCCCCcccCCCCCCCcHHHHHHhhhcccccccc-cccccccccccccccccccCCCcccCCcHh
Q psy8156 27 HAKCETITIPFCQD--IAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKV-KCSPDLQFFLCSMYAPVCTILERAIPPCRN 103 (362)
Q Consensus 27 ~~~Cepi~~~~C~~--l~Yn~T~~PN~~g~~tq~e~~~~l~~f~~L~~~-~Cs~~l~~fLCs~y~P~C~~~~~~~~PCRs 103 (362)
.++||||++++|.| ++||.|+|||++||++|+||+.++++|.+|+++ +||+++++||||+|+|+|++ +++++|||+
T Consensus 2 ~~~Cepi~~~~C~g~~lpYn~T~~PN~~~h~tq~ea~~~l~~f~pLv~vp~C~~~l~~FLCSly~P~C~~-~~~~~PCRs 80 (132)
T cd07451 2 PAKCEPLKNTTCLGSKLPYTYTSLDLVPDSTTQEEVQEKLHLWSGLRNVPKCWAVIQPLLCALYMPKCEN-GKVELPSQE 80 (132)
T ss_pred CceeeECCccccCCCCCCccceecCCccCCcCHHHHHHHHHHHHHHHhhcccchhheeeeEeeECCcCCC-CCccCCCHH
Confidence 57999999999988 999999999999999999999999999999999 99999999999999999986 689999999
Q ss_pred hhHHHhhcchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCC
Q psy8156 104 LCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGD 146 (362)
Q Consensus 104 lCe~v~~~C~~~~~~~g~~WP~~l~C~~fP~~~~~~~~~C~~~ 146 (362)
+|++||++|+++|..| .||++|+|++||... ..|.++
T Consensus 81 lCe~vr~~C~~~m~~~--~WP~~L~C~~~p~~~----~~C~~~ 117 (132)
T cd07451 81 MCQATRGPCKIVENER--GWPDFLRCDNDRFPP----RGCKND 117 (132)
T ss_pred HHHHHHHHHHHHHHcC--CCCCcCcCCCCCCcc----ccCCCH
Confidence 9999999999999876 699999999999873 467765
No 29
>cd07455 CRD_Collagen_XVIII Cysteine-rich domain of the variant 3 of collagen XVIII (V3C18 ). The cysteine-rich domain (CRD) is an essential part of the variant 3 of collagen XVIII (V3C18), which regulates major cellular functions such as the differential epithelial morphogenesis of early lung and kidney development. V3C18 is a 170 kD protein, which is proteolotically processed into the CRD-containing 50 kD glucoprotein precursor that binds Wnt3a through its CRD domain and suppresses the Wnt3a-induced stabilization of beta catenin. Full-length V3C18 is unable to inhibit Wnt signaling.
Probab=100.00 E-value=4e-34 Score=239.94 Aligned_cols=113 Identities=26% Similarity=0.655 Sum_probs=104.9
Q ss_pred CCceeee--CcccccCCCCCCcccCCCCCCCcHHHHHHhhhcccccccccccccccccccccccccccC-CCcccCCcHh
Q psy8156 27 HAKCETI--TIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTI-LERAIPPCRN 103 (362)
Q Consensus 27 ~~~Cepi--~~~~C~~l~Yn~T~~PN~~g~~tq~e~~~~l~~f~~L~~~~Cs~~l~~fLCs~y~P~C~~-~~~~~~PCRs 103 (362)
..+|+|| ++++|+|++||.|+|||++||+||+||+.++++|.+|++++||+++++||||+|+|+|++ ...+++|||+
T Consensus 2 ~~~C~pIp~~l~~C~~l~Yn~t~~PN~lgH~sq~ea~~~~~~f~pLv~~~Csp~l~~FlCs~~~P~C~~~~~~~i~PCRs 81 (123)
T cd07455 2 RPRCLPVPSSLPFCSRLGIRSFWLPNFLNHTSVEEVRAVLAEWAWLLESGCHPSLEWFFCLLLVPSCGGGPPPPPPPCRQ 81 (123)
T ss_pred CCCCccCCCccccccCCCcccccCCcccCCCCHHHHHHHHHHHHHHHhCCCChhhHHHhhhccCCcccCCCCCcCCccHH
Confidence 5799999 699999999999999999999999999999999999999999999999999999999987 4568999999
Q ss_pred hhHHHhhcchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCC
Q psy8156 104 LCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGD 146 (362)
Q Consensus 104 lCe~v~~~C~~~~~~~g~~WP~~l~C~~fP~~~~~~~~~C~~~ 146 (362)
+||+||++|+++|+.|| || |+|++||+.++ ++|+..
T Consensus 82 lCe~vr~~C~~~m~~fg--~p--l~C~~fP~~~~---~~C~~~ 117 (123)
T cd07455 82 FCEVLQDSCWNLLEGGR--LP--VACASLPEQED---GYCVLI 117 (123)
T ss_pred HHHHHHHHHHHHHHccC--CC--ChHHHCCCCCC---cccccC
Confidence 99999999999999877 66 89999999864 678864
No 30
>cd07066 CRD_FZ CRD_domain cysteine-rich domain, also known as Fz (frizzled) domain. CRD_FZ is an essential component of a number of cell surface receptors, which are involved in multiple signal transduction pathways, particularly in modulating the activity of the Wnt proteins, which play a fundamental role in the early development of metazoans. CRD is also found in secreted frizzled related proteins (SFRPs), which lack the transmembrane segment found in the frizzled protein. The CRD domain is also present in the alpha-1 chain of mouse type XVIII collagen, in carboxypeptidase Z, several receptor tyrosine kinases, and the mosaic transmembrane serine protease corin. The CRD domain is well conserved in metazoans - 10 frizzled proteins have been identified in mammals, 4 in Drosophila and 3 in Caenorhabditis elegans. CRD domains have also been identified in multiple tandem copies in a Dictyostelium discoideum protein. Very little is known about the mechanism by which CRD domains interact wit
Probab=99.95 E-value=4.8e-29 Score=209.53 Aligned_cols=117 Identities=50% Similarity=1.113 Sum_probs=109.9
Q ss_pred ceeeeCcccccCCCCCCcccCCCCCCCcHHHHHHhhhcccccccccccccccccccccccccccCC-CcccCCcHhhhHH
Q psy8156 29 KCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTIL-ERAIPPCRNLCLS 107 (362)
Q Consensus 29 ~Cepi~~~~C~~l~Yn~T~~PN~~g~~tq~e~~~~l~~f~~L~~~~Cs~~l~~fLCs~y~P~C~~~-~~~~~PCRslCe~ 107 (362)
+|+||+.++|++++||.|.+||.+||.+|+||+.++..|.+|++.+||+++++|+|++|+|+|.+. ..+++|||++||+
T Consensus 1 ~C~pi~~~~C~~~~Yn~t~~pn~~~~~~~~~a~~~~~~~~~l~~~~C~~~~~~f~Cs~~~P~C~~~~~~~~~PCRs~Cee 80 (119)
T cd07066 1 KCEPIPLPLCRGLPYNTTRFPNLLGHESQEEAEQELESFTPLVNSGCHPDLRFFLCSLYFPECTPDGDRPIPPCRSLCEE 80 (119)
T ss_pred CCccCCHHHhCCCCCCceeCCCccCCCCHHHHHHHHHHHHHHHhcCCChhHHHHHHhccCccccCCCCCcCCChHHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999999999973 3699999999999
Q ss_pred HhhcchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCccCCC
Q psy8156 108 ARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVGDN 147 (362)
Q Consensus 108 v~~~C~~~~~~~g~~WP~~l~C~~fP~~~~~~~~~C~~~~ 147 (362)
|++.|...+..+|..||..++|++||..++ +..|+.++
T Consensus 81 v~~~C~~~~~~~~~~wp~~~~C~~~p~~~~--~~~C~~p~ 118 (119)
T cd07066 81 VRDSCEPLMLAFGFPWPEPLDCDRFPDSNE--EGLCISPP 118 (119)
T ss_pred HHHHHHHHHHHhCCCCCCcCCccccCCCCC--CCcCCCCC
Confidence 999999999999999999999999999875 67898764
No 31
>PF01392 Fz: Fz domain; InterPro: IPR020067 The frizzled (fz) domain is an extracellular domain of about 120 amino acids.It was first identified in the alpha-1 chain of type XVIII collagen and in members of the Frizzled family of seven transmembrane (7TM) proteins which act as receptors for secreted Wingless (Wg)/Wnt glycoproteins []. In addition to these proteins, one or two copies of the fz domain are also found [, , , , ] in: The frizbee (Frzb) family; secreted frizzled-like proteins. Smoothened; another 7TM receptor involved in hedgehog signaling. Carboxpeptidase Z (CPZ). Transmembrane serine protease corin. Two receptor tyrosine kinases (RTKs) subfamilies, the Ror family and the muscle-specific kinase (MuSK) family. As the fz domain contains 10 cysteines which are largely conserved, it has also been called cysteine-rich domain (CRD) []. The fz domain also contains several other highly conserved residues, for example, a basic amino acid follows C6, and a conserved proline residues lies four residues C-terminal to C9 []. The crystal structure of a fz domain shows that it is predominantly alpha-helical with all cysteines forming disulphide bonds. In addition to helical regions, two short beta-strands at the N terminus form a minimal beta-sheet with the second beta sheet passing through a knot created by disulphide bonds []. Several fz domains have been shown to be both necessary and sufficient for Wg/Wnt ligand binding, strongly suggesting that the fz domain is a Wg/Wnt interacting domain [, ].; GO: 0005515 protein binding; PDB: 1IJX_E 3HKL_B 1IJY_B 4F0A_A.
Probab=99.92 E-value=3.1e-26 Score=190.46 Aligned_cols=114 Identities=38% Similarity=0.901 Sum_probs=96.8
Q ss_pred eeeeCcccccCCCCCCcccCCCCCCCcHHHHHHhhhcccccccccccccccccccccccccccCCCc--ccCCcHhhhHH
Q psy8156 30 CETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMYAPVCTILER--AIPPCRNLCLS 107 (362)
Q Consensus 30 Cepi~~~~C~~l~Yn~T~~PN~~g~~tq~e~~~~l~~f~~L~~~~Cs~~l~~fLCs~y~P~C~~~~~--~~~PCRslCe~ 107 (362)
|+||+.++|++++||.|.|||.+||.+|+++..++..|..|++.+||++++.|||++++|+|.+... +++|||++|++
T Consensus 1 C~pi~~~~C~~~~y~~t~~pn~~~~~~~~~~~~~~~~~~~l~~~~C~~~~~~flC~~~~P~C~~~~~~~~~~pCr~~C~~ 80 (116)
T PF01392_consen 1 CEPITLSFCRGLPYNQTSFPNSLGHQTQDEASQQLNAFSTLVNSGCHPYLRPFLCSLYFPPCDEGGPTPPLPPCRSLCEE 80 (116)
T ss_dssp EEE---GGGTTSS-TEEESSETTTSSSHHHHHHHHHCCHHHHCCTSHTTHHHHHHHHHS-BBBSSSSSSB-EB-HHHHHH
T ss_pred CccCChHHhcCCCCCceEeecccCCcCHHHHHHHHHHHHHHhcchhhHHHhhhhhcccCCcCCCCCcccccCCCHHHccc
Confidence 8999999999999999999999999999999999999999999999999999999999999987332 38999999999
Q ss_pred HhhcchhhhhhcCCCCCCCcCCCCCCCCCCCCCCCcc
Q psy8156 108 ARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCV 144 (362)
Q Consensus 108 v~~~C~~~~~~~g~~WP~~l~C~~fP~~~~~~~~~C~ 144 (362)
|++.|.+.+..++..||+.++|++||..++ .+..|+
T Consensus 81 v~~~C~~~~~~~~~~~~~~~~C~~lP~~~~-~~~~C~ 116 (116)
T PF01392_consen 81 VKSSCSPELENLGLGWPSFLDCSNLPESNS-DSESCI 116 (116)
T ss_dssp HHHHHHHHHHHTTTTTSGGG-GGGSS-TTT-STTCCB
T ss_pred cccccHHHHHHhcCCCCCCCCcccCCCCCC-CCCCCC
Confidence 999999999999999999999999999876 356664
No 32
>cd07459 CRD_TK_ROR_like Cysteine-rich domain of tyrosine kinase-like orphan receptors. The cysteine-rich domain (CRD) is an essential part of the tyrosine kinase-like orphan receptor (Ror) proteins, a conserved family of tyrosine kinases that function in various processes, including neuronal and skeletal development, cell polarity, and cell movement. Ror proteins are receptors of Wnt proteins, which are key players in a number of fundamental cellular processes in embryogenesis and postnatal development. In different cellular contexts, Ror proteins can either activate or repress transcription of Wnt target genes, and can modulate Wnt signaling by sequestering Wnt ligands. In addition, a number of Wnt-independent functions have been proposed for both Ror1 and Ror2.
Probab=98.43 E-value=1.4e-07 Score=81.29 Aligned_cols=112 Identities=25% Similarity=0.422 Sum_probs=74.8
Q ss_pred CceeeeCcccccC-CCCCCccc-CCCCCCCcHHHHHHhhh----ccc--ccccccccccccccccccccccccC---CCc
Q psy8156 28 AKCETITIPFCQD-IAYNETIM-PNLLGHSKQEDAGFEVH----QYF--PLVKVKCSPDLQFFLCSMYAPVCTI---LER 96 (362)
Q Consensus 28 ~~Cepi~~~~C~~-l~Yn~T~~-PN~~g~~tq~e~~~~l~----~f~--~L~~~~Cs~~l~~fLCs~y~P~C~~---~~~ 96 (362)
+.|++++-..|++ |+ |...| .. ..+|++.+.++. .+. .-+...|.+++..+||..+||.|.+ .+.
T Consensus 1 G~C~~Y~G~vC~~~L~-~~~Vyv~~---~~~q~~~e~~l~~~~~~i~~~~~ls~~C~~~a~~~lC~~~FP~C~~~~~~~~ 76 (135)
T cd07459 1 GYCQPYRGSVCAKYLG-NKSVYVTS---KQTQEDIEEQLSAAFTVISTSSDVSPKCQQYALPSLCYYAFPLCDEGSSTPK 76 (135)
T ss_pred CcCccccchhhHHhcC-CCeEEEeC---CCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHhhCCCCCCCCCCCC
Confidence 5799999999998 55 55454 22 233443332221 222 1245699999999999999999987 367
Q ss_pred ccCCcHhhhHHHhh-cchhhhh---h---cCCCCCCCcCCCCCCCCCCCCCCCcc
Q psy8156 97 AIPPCRNLCLSARN-GCEKLMN---D---FGFQWPETFECSKFPLPSSGPDSLCV 144 (362)
Q Consensus 97 ~~~PCRslCe~v~~-~C~~~~~---~---~g~~WP~~l~C~~fP~~~~~~~~~C~ 144 (362)
+.+.||+-|+.++. .|..... + .|.... .-||+.+|..+......|+
T Consensus 77 p~~iCre~C~~l~~~~C~~E~~~~~~~~~~g~~~~-lp~C~~LP~~~~~~~~~C~ 130 (135)
T cd07459 77 PRRICRDECELLENDLCKKEYAIAKRHPLIGHQLL-LPDCSSLPSPGSPESSNCI 130 (135)
T ss_pred CCcccHHHHHHHHHhHhHHHHHHHHhCcccCCccC-CCCccCCCCCCCCCCCCCe
Confidence 88999999999987 9964432 2 232222 3599999987642234454
No 33
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=98.11 E-value=2.2e-05 Score=76.48 Aligned_cols=98 Identities=21% Similarity=0.368 Sum_probs=80.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCccccCCCCCCCCCC
Q psy8156 237 SEKEKKMSRLWVGIWSALCATSCLFTVLTFMIDSDRFRYPERPIIFLSVCYLMVSITYIIGFMSGDKISCTKPFSPPPEH 316 (362)
Q Consensus 237 t~~e~~~~~~w~~v~s~lc~i~TlftvlTF~id~~rf~YPerpIifls~Cy~~~Sl~~li~~~~~~~iaC~~~~~~~~~~ 316 (362)
+++|.+..+....+-|++|++.++|.++||+.-++.-+++.|-|+|++++=++.+++.++.... ++.
T Consensus 2 ~~~~~~~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~~~------~~~------- 68 (303)
T PF05462_consen 2 VKQQIRTLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMTLS------PSA------- 68 (303)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhc------ccC-------
Confidence 4678899999999999999999999999999766544667899999999999988887664432 111
Q ss_pred CcccceeeeecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8156 317 PHLAMVSTITQGTRQEACTILFMILYFFGMASSIWDVFVMAS 358 (362)
Q Consensus 317 ~~~~~~~~~~~g~~~~~C~i~F~l~Yff~mAa~iWWviLt~t 358 (362)
+..+..|.+.+++++||..|+.+|...++++
T Consensus 69 -----------~~~s~lC~~Qafliq~f~~as~lWt~~iA~n 99 (303)
T PF05462_consen 69 -----------GENSFLCQFQAFLIQFFMLASFLWTLCIAFN 99 (303)
T ss_pred -----------CCCCcchhhHhHHHHHhhHHHHHHHHHHHHH
Confidence 1124679999999999999999999998876
No 34
>cd07467 CRD_TK_ROR1 Cysteine-rich domain of tyrosine kinase-like orphan receptor 1. The cysteine-rich domain (CRD) is an essential part of the tyrosine kinase-like orphan receptor 1 (Ror1), a conserved family of tyrosine kinases that function in various processes, including neuronal and skeletal development, cell polarity, and cell movement. Ror proteins are receptors of Wnt proteins, which are key players in a number of fundamental cellular processes in embryogenesis and postnatal development. In different cellular contexts, Ror proteins can either activate or repress transcription of Wnt target genes, and can modulate Wnt signaling by sequestering Wnt ligands. In addition, a number of Wnt-independent functions have been proposed for both Ror1 and Ror2.
Probab=97.40 E-value=7.1e-05 Score=64.55 Aligned_cols=117 Identities=18% Similarity=0.263 Sum_probs=76.7
Q ss_pred CCceeeeCcccccCCCCCCcccCCCCCCCcHHHHHHhhhc---cc---ccccccccccccccccccccccccC---CCcc
Q psy8156 27 HAKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQ---YF---PLVKVKCSPDLQFFLCSMYAPVCTI---LERA 97 (362)
Q Consensus 27 ~~~Cepi~~~~C~~l~Yn~T~~PN~~g~~tq~e~~~~l~~---f~---~L~~~~Cs~~l~~fLCs~y~P~C~~---~~~~ 97 (362)
.+-|++++-..|+..--|.+.|=| ...+|.+.+.++.. +. .-+...|.+.+..+||...||.|.. .+.+
T Consensus 2 ~GyC~~YrG~vC~~~L~~~~Vf~~--~~~~~~~~E~~l~aa~~~i~~s~~vs~~Cr~~A~~~LC~~~FP~C~~~~~~P~p 79 (142)
T cd07467 2 DGFCQPYRGIACARFIGNRTIYME--SLHMQGEIENQITAAFTMIGTSSHLSDKCSQFAIPSLCHYAFPYCDETSGMPKP 79 (142)
T ss_pred CCccccccchHHHHHhCCCeEEEe--CCCCHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhCCCCcccCCCCCc
Confidence 467999999999986666555433 22455655554442 22 1234699999999999999999987 4567
Q ss_pred cCCcHhhhHHH-hhcchhh---hhhcCC--CCCCCcCCCCCCCCCCCCCCCccC
Q psy8156 98 IPPCRNLCLSA-RNGCEKL---MNDFGF--QWPETFECSKFPLPSSGPDSLCVG 145 (362)
Q Consensus 98 ~~PCRslCe~v-~~~C~~~---~~~~g~--~WP~~l~C~~fP~~~~~~~~~C~~ 145 (362)
.+-||+-|+.+ .+-|... +++-++ .-...=+|+.+|..+......|+.
T Consensus 80 r~iCreeC~~le~~~C~~Ey~~a~~~~~i~~~~~LP~C~~LP~~~~~~~~~C~~ 133 (142)
T cd07467 80 RDLCRDECEILENVLCQTEYIFARSNPMILMRLKLPNCEDLAQPDSPEAANCIR 133 (142)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHhCcccccccCCCChhhcCCCCCCCCCCcee
Confidence 88999999999 4568532 222211 101122899999876532344554
No 35
>cd07468 CRD_TK_ROR2 Cysteine-rich domain of tyrosine kinase-like orphan receptor 2. The cysteine-rich domain (CRD) is an essential part of the tyrosine kinase-like orphan receptor (Ror2), a conserved family of tyrosine kinases that function in various processes, including neuronal and skeletal development, cell polarity, and cell movement. Ror proteins are receptors of Wnt proteins, which are key players in a number of fundamental cellular processes in embryogenesis and postnatal development. In different cellular contexts, Ror proteins can either activate or repress transcription of Wnt target genes, and can modulate Wnt signaling by sequestering Wnt ligands. In addition, a number of Wnt-independent functions have been proposed for both Ror1 and Ror2.
Probab=97.22 E-value=0.00015 Score=62.40 Aligned_cols=115 Identities=19% Similarity=0.327 Sum_probs=76.0
Q ss_pred CCceeeeCcccccCCCCCCcccCCCCCCCcHHHHHHhhh---ccc---ccccccccccccccccccccccccC---CCcc
Q psy8156 27 HAKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVH---QYF---PLVKVKCSPDLQFFLCSMYAPVCTI---LERA 97 (362)
Q Consensus 27 ~~~Cepi~~~~C~~l~Yn~T~~PN~~g~~tq~e~~~~l~---~f~---~L~~~~Cs~~l~~fLCs~y~P~C~~---~~~~ 97 (362)
.+-|++++-..|+..--|.+.|=+. ..+|.+++.++. .|. .-+...|.+.+..+||...||.|.. .+.+
T Consensus 2 ~G~C~~Y~G~vC~~yL~~~~V~v~~--~~~~~~ie~~l~aa~~~i~~s~~ls~~Cr~~A~~~LC~~~Fp~C~~~~~~p~p 79 (140)
T cd07468 2 DGFCQPYRGIACARFIGNRTIYVDS--LQMQGEIENRITAAFTMIGTSTHLSDQCSQFAIPSFCHFVFPLCDDRSRTPKP 79 (140)
T ss_pred CCcceeccChHHHHHhCCCeEEEec--CCchHHHHHHHHHHHhhhhccccccHHHHHHHHHHHHHHcCCCCCCCCCCCCC
Confidence 4679999999999866566554221 234555555444 222 2234699999999999999999986 4567
Q ss_pred cCCcHhhhHHH-hhcchhh---hhh---cCCCCCCCcCCCCCCCCCCCCCCCcc
Q psy8156 98 IPPCRNLCLSA-RNGCEKL---MND---FGFQWPETFECSKFPLPSSGPDSLCV 144 (362)
Q Consensus 98 ~~PCRslCe~v-~~~C~~~---~~~---~g~~WP~~l~C~~fP~~~~~~~~~C~ 144 (362)
.+-||+-|+.+ .+-|... +++ .|..+. .-+|+++|..+......|+
T Consensus 80 r~iCreeC~~l~~~~C~~Ey~~a~~~~~i~~~~~-LP~C~~LP~~~~~~~~~C~ 132 (140)
T cd07468 80 RELCRDECEVLENDLCRQEYNIARSNPLILMQLQ-LPKCEELPLPESPEAANCM 132 (140)
T ss_pred cchHHHHHHHHHHHHhHHHHHHHhhccccccccc-CCchhhCCCCCCCCCCCcc
Confidence 78899999999 4568532 222 132232 3489999988653334454
No 36
>cd07469 CRD_TK_ROR_related Cysteine-rich domain of proteins similar to tyrosine kinase-like orphan receptors. The cysteine-rich domain (CRD) is an essential part of the tyrosine kinase-like orphan receptor (Ror) proteins, a conserved family of tyrosine kinases that function in various processes, including neuronal and skeletal development, cell polarity, and cell movement. Ror proteins are receptors of Wnt proteins, which are key players in a number of fundamental cellular processes in embryogenesis and postnatal development. In different cellular contexts, Ror proteins can either activate or repress transcription of Wnt target genes, and can modulate Wnt signaling by sequestering Wnt ligands.
Probab=96.69 E-value=0.00047 Score=59.85 Aligned_cols=86 Identities=22% Similarity=0.415 Sum_probs=60.4
Q ss_pred CCceeeeCcccccC-CCCCCcccCCCCCCCcHHHHHHhhhc--cccc---ccccccccccccccccccccccC---CCcc
Q psy8156 27 HAKCETITIPFCQD-IAYNETIMPNLLGHSKQEDAGFEVHQ--YFPL---VKVKCSPDLQFFLCSMYAPVCTI---LERA 97 (362)
Q Consensus 27 ~~~Cepi~~~~C~~-l~Yn~T~~PN~~g~~tq~e~~~~l~~--f~~L---~~~~Cs~~l~~fLCs~y~P~C~~---~~~~ 97 (362)
.+-|++++-..|++ |.-+...|-|. ...+++++++++.. |..+ +...|.+.....||...||.|.. .+.+
T Consensus 2 ~GyC~~Y~G~iC~~yL~~~~~V~~~~-s~~~~~~~~E~l~~~~~~e~~~~ls~~Cr~~A~~~LC~~aFP~C~~~~~~p~p 80 (147)
T cd07469 2 AGYCATYRGEVCRAYLSNDALVWFNS-SYADPEGLNEQLTTGLWEELIKTVSELCRPAAEKLLCNYAFPECHPSGVGPTP 80 (147)
T ss_pred CCccccccchHHHHHhCCCcEEEEec-CCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCCCCCCCCCc
Confidence 46799999999998 44444443232 23344444443332 4444 35699999999999999999987 3456
Q ss_pred cCCcHhhhHHHhhc-ch
Q psy8156 98 IPPCRNLCLSARNG-CE 113 (362)
Q Consensus 98 ~~PCRslCe~v~~~-C~ 113 (362)
.+-||+-|+.++.. |.
T Consensus 81 ~plCredC~a~~~~~C~ 97 (147)
T cd07469 81 KPLCREDCLAVKELFCY 97 (147)
T ss_pred CchhHHHHHHHHHHHhH
Confidence 77899999999665 74
No 37
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=95.71 E-value=0.0053 Score=56.96 Aligned_cols=95 Identities=16% Similarity=0.294 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCccccCCCCCCCCCCCcccce
Q psy8156 243 MSRLWVGIWSALCATSCLFTVLTFMIDSDRFRYPERPIIFLSVCYLMVSITYIIGFMSGDKISCTKPFSPPPEHPHLAMV 322 (362)
Q Consensus 243 ~~~~w~~v~s~lc~i~TlftvlTF~id~~rf~YPerpIifls~Cy~~~Sl~~li~~~~~~~iaC~~~~~~~~~~~~~~~~ 322 (362)
.++....+-+++|+++.+++++||..-++.-+.+.+....++++.++..+.++++... .. .+.
T Consensus 2 ~l~~i~~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~~~~---~~-~~~------------- 64 (242)
T PF00002_consen 2 ALSIISYVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIGISQ---TF-SPI------------- 64 (242)
T ss_dssp HHHHHHHHHHH---------------------------------------------------------------------
T ss_pred eeehHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHheehhh---cc-ccc-------------
Confidence 3566677778888888888888888654322223466678888888888888765311 11 000
Q ss_pred eeeecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8156 323 STITQGTRQEACTILFMILYFFGMASSIWDVFVMAS 358 (362)
Q Consensus 323 ~~~~~g~~~~~C~i~F~l~Yff~mAa~iWWviLt~t 358 (362)
. ...+..|.+..+++|||.+|+..|..+.++-
T Consensus 65 ---~-~~~~~~C~~~a~~~hy~~la~f~Wm~~~~~~ 96 (242)
T PF00002_consen 65 ---S-TTNHCLCRAIAILLHYFFLASFFWMLVEAFY 96 (242)
T ss_dssp ------------------------------------
T ss_pred ---c-ccccccchhhhhHhHHHHHHHHHHHHHHHHH
Confidence 0 0012359999999999999999999887653
No 38
>KOG4193|consensus
Probab=93.73 E-value=0.32 Score=51.92 Aligned_cols=85 Identities=16% Similarity=0.320 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCCchHHHHHHHHHHHHHHHHHHhhcCCccccCCCCCCCCCCCcccceeee
Q psy8156 247 WVGIWSALCATSCLFTVLTFMIDSD-RFRYPERPIIFLSVCYLMVSITYIIGFMSGDKISCTKPFSPPPEHPHLAMVSTI 325 (362)
Q Consensus 247 w~~v~s~lc~i~TlftvlTF~id~~-rf~YPerpIifls~Cy~~~Sl~~li~~~~~~~iaC~~~~~~~~~~~~~~~~~~~ 325 (362)
..-|--+++.++-+.+++||++=++ |..+ .+..+=+++|-++.-+-+++ ++... +. +
T Consensus 325 i~~VG~~iSlvcL~lti~ty~~~~~l~~~~-~~i~~~l~~~L~l~~l~fL~----~~~~~--~~-------------~-- 382 (610)
T KOG4193|consen 325 LSTVGCIISLVCLLLTIATYLLFRKLQNDR-TKIHINLCLCLFLAELLFLL----GIDRT--ST-------------S-- 382 (610)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhc----ccccc--cC-------------c--
Confidence 3345556666666777788886443 2222 45555555554433333322 22221 00 0
Q ss_pred ecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8156 326 TQGTRQEACTILFMILYFFGMASSIWDVFVMAS 358 (362)
Q Consensus 326 ~~g~~~~~C~i~F~l~Yff~mAa~iWWviLt~t 358 (362)
+ . .|.++.+++|||.+|+..||.+.++-
T Consensus 383 ~----~-~C~~~a~llhff~LaaF~Wm~leg~h 410 (610)
T KOG4193|consen 383 V----V-LCIAAAILLHFFFLAAFFWMLLEGFH 410 (610)
T ss_pred c----c-ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 1 79999999999999999999988763
No 39
>PF12929 Mid1: Stretch-activated Ca2+-permeable channel component; InterPro: IPR024338 Mid1 is a yeast plasma membrane protein required for Ca2+ influx induced by the mating pheromone alpha-factor during the mating process [, , ]. The protein is composed of 548-amino-acid residues, contains four hydrophobic regions (H1, H2, H3 and H4) and two cysteine-rich regions (C1 and C2) at the C terminus. H1 appears to be a signal sequence necessary for the alpha-factor-induced delivery to the plasma membrane. The region from H1 to H3 is required for the localisation of Mid1 in the plasma and ER membranes. C1 and C2 are thought to be involved in oligomerisation via the formation of disulphide bonds. Trafficking of Mid1-GFP to the plasma membrane is dependent on the N-glycosylation of Mid1 and the transporter protein Sec12. This suggests that the trafficking of Mid1-GFP to the plasma membrane requires a Sec12-dependent pathway from the ER to the Golgi, and that Mid1 is recruited via a Sec6- and Sec7-independent pathway from the Golgi to the plasma membrane.
Probab=92.62 E-value=0.14 Score=52.11 Aligned_cols=92 Identities=22% Similarity=0.495 Sum_probs=58.9
Q ss_pred CCCceeeeC-cccccCCCCCCcccCCCCCCCcHH------HHHHhhh-----------------ccccccc-cccccccc
Q psy8156 26 IHAKCETIT-IPFCQDIAYNETIMPNLLGHSKQE------DAGFEVH-----------------QYFPLVK-VKCSPDLQ 80 (362)
Q Consensus 26 ~~~~Cepi~-~~~C~~l~Yn~T~~PN~~g~~tq~------e~~~~l~-----------------~f~~L~~-~~Cs~~l~ 80 (362)
....|+-|. +++|.++.|.-=.=|+..+..+.- -|..... .|+++.. ..|.+.=+
T Consensus 229 ~~~nC~Lv~dL~FC~~VAYaVP~np~~~~n~t~L~~~YD~~A~~~Y~NFs~sL~qi~C~t~~~~~YSl~r~C~DC~~aYk 308 (427)
T PF12929_consen 229 SDDNCQLVYDLDFCSEVAYAVPSNPSFFYNKTELAKFYDDYAKSLYANFSKSLQQIPCNTDSEARYSLARTCDDCARAYK 308 (427)
T ss_pred CCCCeeeecCCCCCCCcceecccCcccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccCCCCchHHHHHHh
Confidence 456799987 899999888654444432111111 1111111 3333332 35666667
Q ss_pred ccccccccccccCC--C----------------------------------------------cccCCcHhhhHHHhhcc
Q psy8156 81 FFLCSMYAPVCTIL--E----------------------------------------------RAIPPCRNLCLSARNGC 112 (362)
Q Consensus 81 ~fLCs~y~P~C~~~--~----------------------------------------------~~~~PCRslCe~v~~~C 112 (362)
.-||+|-.|+|++. . +-++||.++|.++.++|
T Consensus 309 ~WLCaVtIPRC~d~~~~~~~~~~r~~~~~~~ng~~~~~~~~~~~~~~~sRN~~Id~~i~PgpY~EiLPC~dlCy~vVrsC 388 (427)
T PF12929_consen 309 NWLCAVTIPRCTDFSSTSPYLQPRNAGQPFPNGTSLPATLRNSRASNSSRNPFIDEVIKPGPYKEILPCIDLCYAVVRSC 388 (427)
T ss_pred hcccEeecccccCCCCCCcccccccccCCCcCCcccccccccccccCCCCCcccccccCCCCcceeccHHHHHHHHHhcC
Confidence 89999999999751 0 23569999999999999
Q ss_pred hhhhh
Q psy8156 113 EKLMN 117 (362)
Q Consensus 113 ~~~~~ 117 (362)
.+.+.
T Consensus 389 P~~lG 393 (427)
T PF12929_consen 389 PADLG 393 (427)
T ss_pred chhhC
Confidence 88754
No 40
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=89.43 E-value=1.4 Score=40.46 Aligned_cols=91 Identities=20% Similarity=0.248 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-cC-CC-CCCCCchHHHHHHHHHHHHHHHHHHhhcCCccccCCCCCCCCCCCcccce
Q psy8156 246 LWVGIWSALCATSCLFTVLTFMI-DS-DR-FRYPERPIIFLSVCYLMVSITYIIGFMSGDKISCTKPFSPPPEHPHLAMV 322 (362)
Q Consensus 246 ~w~~v~s~lc~i~TlftvlTF~i-d~-~r-f~YPerpIifls~Cy~~~Sl~~li~~~~~~~iaC~~~~~~~~~~~~~~~~ 322 (362)
.-..+.|.+++++++.++..|.. ++ +| ||+ +=|+.|.++=++.|+++++.-.. .++ +++
T Consensus 5 ~~~i~~s~lSlls~~~~l~~~~~~~~r~~~fR~--~LIl~L~~aD~~qal~~~i~~~~--~l~--~~~------------ 66 (201)
T PF11710_consen 5 IGSIVISALSLLSSLAVLYLFFFITYRRRSFRH--QLILNLLLADFIQALAFLISPIR--WLA--RGG------------ 66 (201)
T ss_pred eehHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHH--HHh--cCC------------
Confidence 34456677777777766666663 23 33 564 67888999999999999983211 111 110
Q ss_pred eeeecCCCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8156 323 STITQGTRQEACTILFMILYFFGMASSIWDVFVMAS 358 (362)
Q Consensus 323 ~~~~~g~~~~~C~i~F~l~Yff~mAa~iWWviLt~t 358 (362)
... .++.|.+.+++.+.+-.++.+|=.+.++.
T Consensus 67 -i~~---~s~~C~aqGf~~q~g~~~sd~~ilaIAih 98 (201)
T PF11710_consen 67 -IIA---PSPFCQAQGFFLQVGDEASDLWILAIAIH 98 (201)
T ss_pred -eeC---CCCchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 011 24679999999999999998887766654
No 41
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=63.24 E-value=61 Score=32.81 Aligned_cols=60 Identities=22% Similarity=0.294 Sum_probs=39.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhhc--C-CccccCCCCCCCCCCCcccceeeeecCCC---CCchHHHHHHHHHHHHHHHHH
Q psy8156 278 RPIIFLSVCYLMVSITYIIGFMS--G-DKISCTKPFSPPPEHPHLAMVSTITQGTR---QEACTILFMILYFFGMASSIW 351 (362)
Q Consensus 278 rpIifls~Cy~~~Sl~~li~~~~--~-~~iaC~~~~~~~~~~~~~~~~~~~~~g~~---~~~C~i~F~l~Yff~mAa~iW 351 (362)
|.++.+++|=++.++|-++|... + .++.=... ..+|++ ..-|+.+-+-++||-+|...|
T Consensus 69 rIl~~la~aDlLaclGVivRS~vWl~~p~~~~s~s---------------~~~~~d~wp~afCv~ss~WIq~fYsAtfwW 133 (405)
T PF02101_consen 69 RILFWLAVADLLACLGVIVRSSVWLGFPNFIDSIS---------------DVNGTDIWPAAFCVGSSMWIQLFYSATFWW 133 (405)
T ss_pred hhHHHHHHHHHHhhhhHHHHhhhhhcCCccccccc---------------CCCCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999999654 2 22211111 011211 245999999999987766544
Q ss_pred H
Q psy8156 352 D 352 (362)
Q Consensus 352 W 352 (362)
-
T Consensus 134 t 134 (405)
T PF02101_consen 134 T 134 (405)
T ss_pred H
Confidence 3
No 42
>KOG4564|consensus
Probab=58.22 E-value=86 Score=32.67 Aligned_cols=93 Identities=15% Similarity=0.285 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCC-CchHHHHHHHHHHHHHHHHHHhhc---CCccccCCCCCCCCCCCcccceee
Q psy8156 249 GIWSALCATSCLFTVLTFMIDSDRFRYP-ERPIIFLSVCYLMVSITYIIGFMS---GDKISCTKPFSPPPEHPHLAMVST 324 (362)
Q Consensus 249 ~v~s~lc~i~TlftvlTF~id~~rf~YP-erpIifls~Cy~~~Sl~~li~~~~---~~~iaC~~~~~~~~~~~~~~~~~~ 324 (362)
.+--.+|+++=+.+++.|..=++ .+=. ...-.=|-+.|.+.++.+++.... +..-.+.++... ...
T Consensus 152 tvGyslSl~sL~vAl~If~~FR~-L~CtRn~IH~nLF~SfiLra~~~~i~~~~l~~~~~~~~~~~~~~---------~~~ 221 (473)
T KOG4564|consen 152 TVGYSLSLVSLLVALIIFLYFRS-LHCTRNYIHMNLFASFILRAASVLIKDLVLVVNGEQDASSDTSL---------HCL 221 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh-hcchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccc---------ccc
Confidence 34444444444444444543232 2221 133344556788888988886432 223334333211 111
Q ss_pred eecCCCCCchHHHHHHHHHHHHHHHHHHH
Q psy8156 325 ITQGTRQEACTILFMILYFFGMASSIWDV 353 (362)
Q Consensus 325 ~~~g~~~~~C~i~F~l~Yff~mAa~iWWv 353 (362)
+.+ ....|-+++++++||.+|-..|=.
T Consensus 222 ~~~--~~~~Ck~~~~~~~Yf~~aNf~Wml 248 (473)
T KOG4564|consen 222 ISS--NPVGCKLLFVFFQYFVLANFFWML 248 (473)
T ss_pred ccc--cchhHHHHHHHHHHHHHHHHHHHH
Confidence 222 347899999999999999888844
No 43
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=54.34 E-value=55 Score=28.64 Aligned_cols=55 Identities=16% Similarity=0.276 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHH
Q psy8156 240 EKKMSRLWVGIWSALCATSCLFTVLTFMIDSDRFRYPERPIIFLSVCYLMVSITY 294 (362)
Q Consensus 240 e~~~~~~w~~v~s~lc~i~TlftvlTF~id~~rf~YPerpIifls~Cy~~~Sl~~ 294 (362)
+..+-..|..++.++-++..+|..+-|+=|+...||=|.-||++-+..++..+-|
T Consensus 11 q~~~~~~~~~~~i~~ll~~l~~~~~~Y~r~r~~tKyRDL~II~~L~ll~l~giq~ 65 (149)
T PF11694_consen 11 QQSQNDYLRYILIIILLLVLIFFFIKYLRNRLDTKYRDLSIIALLLLLLLIGIQY 65 (149)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHH
Confidence 3344555556667777777777777888888889999999998888877766543
No 44
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=49.34 E-value=90 Score=32.16 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=18.0
Q ss_pred chHHHHHHHHHHHHHHHHHHhhcCCc
Q psy8156 278 RPIIFLSVCYLMVSITYIIGFMSGDK 303 (362)
Q Consensus 278 rpIifls~Cy~~~Sl~~li~~~~~~~ 303 (362)
.++..+.+.|.+.++++-..-+..|.
T Consensus 113 s~~~~~l~~~il~~i~~~~s~Vfyds 138 (438)
T COG2270 113 SYLLLLLLFLILASIGFEFSNVFYDS 138 (438)
T ss_pred chHHHHHHHHHHHHHhcchhheehhh
Confidence 66777888888888887665444443
No 45
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=44.53 E-value=7.8 Score=32.44 Aligned_cols=59 Identities=25% Similarity=0.519 Sum_probs=34.9
Q ss_pred CCCcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHH
Q psy8156 233 GMFFSEKEKK--MSRLWVGIWSALCATSCLFTVLTFMIDSDRFRYPERPIIFLSVCYLMVSITYII 296 (362)
Q Consensus 233 ~~~ft~~e~~--~~~~w~~v~s~lc~i~TlftvlTF~id~~rf~YPerpIifls~Cy~~~Sl~~li 296 (362)
.|+|.|+.++ .+...+++..++..+.|++..+-|..++ |+---+|+++|..++++.-++
T Consensus 17 rPLFGE~~~r~riinliiG~vT~l~VLvtii~afvf~~~~-----p~p~~iffavcI~l~~~s~~l 77 (118)
T PF10856_consen 17 RPLFGETSARDRIINLIIGAVTSLFVLVTIISAFVFPQDP-----PKPLHIFFAVCILLICISAIL 77 (118)
T ss_pred CcccCCCCcccEEEEeehHHHHHHHHHHHHhheEEecCCC-----CCceEEehHHHHHHHHHHHHh
Confidence 3788655433 4555555555555555554444444333 222237999999999987665
No 46
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=31.78 E-value=44 Score=26.40 Aligned_cols=22 Identities=23% Similarity=0.688 Sum_probs=20.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHH
Q psy8156 275 YPERPIIFLSVCYLMVSITYII 296 (362)
Q Consensus 275 YPerpIifls~Cy~~~Sl~~li 296 (362)
.-+|-++++++.+|+..++||+
T Consensus 67 ~~D~~li~~~~~~f~~~v~yI~ 88 (92)
T PF03908_consen 67 KTDRILIFFAFLFFLLVVLYIL 88 (92)
T ss_pred HHhHHHHHHHHHHHHHHHHHHh
Confidence 3489999999999999999998
No 47
>PF03694 Erg28: Erg28 like protein; InterPro: IPR005352 This is a family of integral membrane proteins, which may contain four transmembrane helices. Members of this family are thought to be involved in sterol C-4 demethylation. In Saccharomyces cerevisiae (Baker's yeast) they may tether Erg26p (sterol dehydrogenase/decarboxylase) and Erg27p (3-ketoreductase) to the endoplasmic reticulum or may facilitate interaction between these proteins []. The family contains a conserved arginine and histidine that may be functionally important.; GO: 0016021 integral to membrane
Probab=29.48 E-value=1.2e+02 Score=25.20 Aligned_cols=21 Identities=10% Similarity=0.366 Sum_probs=18.9
Q ss_pred CchHHHHHHHHHHHHHHHHHH
Q psy8156 277 ERPIIFLSVCYLMVSITYIIG 297 (362)
Q Consensus 277 erpIifls~Cy~~~Sl~~li~ 297 (362)
++++..+++.-+++++++++.
T Consensus 68 n~~lY~lt~~SfviAl~HF~s 88 (111)
T PF03694_consen 68 NKPLYDLTFWSFVIALGHFLS 88 (111)
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999885
No 48
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=27.63 E-value=34 Score=27.83 Aligned_cols=34 Identities=18% Similarity=0.368 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q psy8156 242 KMSRLWVGIWSALCATSCLFTVLTFMIDSDRFRY 275 (362)
Q Consensus 242 ~~~~~w~~v~s~lc~i~TlftvlTF~id~~rf~Y 275 (362)
...-.|++++|++|.+.-++.|.=|.|-|.|-++
T Consensus 60 ~~~iili~lls~v~IlVily~IyYFVILRer~~~ 93 (101)
T PF06024_consen 60 NGNIILISLLSFVCILVILYAIYYFVILRERQKS 93 (101)
T ss_pred cccchHHHHHHHHHHHHHHhhheEEEEEeccccc
Confidence 4567899999999999999999888898877554
No 49
>PF10582 Connexin_CCC: Gap junction channel protein cysteine-rich domain; InterPro: IPR019570 The connexins are a family of integral membrane proteins that oligomerise to form intercellular channels that are clustered at gap junctions. These channels are specialised sites of cell-cell contact that allow the passage of ions, intracellular metabolites and messenger molecules (with molecular weight less than 1-2kDa) from the cytoplasm of one cell to its opposing neighbours. They are found in almost all vertebrate cell types, and somewhat similar proteins have been cloned from plant species. Invertebrates utilise a different family of molecules, innexins, that share a similar predicted secondary structure to the vertebrate connexins, but have no sequence identity to them []. Vertebrate gap junction channels are thought to participate in diverse biological functions. For instance, in the heart they permit the rapid cell-cell transfer of action potentials, ensuring coordinated contraction of the cardiomyocytes. They are also responsible for neurotransmission at specialised 'electrical' synapses. In non-excitable tissues, such as the liver, they may allow metabolic cooperation between cells. In the brain, glial cells are extensively-coupled by gap junctions; this allows waves of intracellular Ca2+ to propagate through nervous tissue, and may contribute to their ability to spatially-buffer local changes in extracellular K+ concentration []. The connexin protein family is encoded by at least 13 genes in rodents, with many homologues cloned from other species. They show overlapping tissue expression patterns, most tissues expressing more than one connexin type. Their conductances, permeability to different molecules, phosphorylation and voltage-dependence of their gating, have been found to vary. Possible communication diversity is increased further by the fact that gap junctions may be formed by the association of different connexin isoforms from apposing cells. However, in vitro studies have shown that not all possible combinations of connexins produce active channels [, ]. Hydropathy analysis predicts that all cloned connexins share a common transmembrane (TM) topology. Each connexin is thought to contain 4 TM domains, with two extracellular and three cytoplasmic regions. This model has been validated for several of the family members by in vitro biochemical analysis. Both N- and C-termini are thought to face the cytoplasm, and the third TM domain has an amphipathic character, suggesting that it contributes to the lining of the formed-channel. Amino acid sequence identity between the isoforms is ~50-80%, with the TM domains being well conserved. Both extracellular loops contain characteristically conserved cysteine residues, which likely form intramolecular disulphide bonds. By contrast, the single putative intracellular loop (between TM domains 2 and 3) and the cytoplasmic C terminus are highly variable among the family members. Six connexins are thought to associate to form a hemi-channel, or connexon. Two connexons then interact (likely via the extracellular loops of their connexins) to form the complete gap junction channel. NH2-*** *** *************-COOH ** ** ** ** ** ** ** ** Cytoplasmic ---**----**-----**----**---------------- ** ** ** ** Membrane ** ** ** ** ---**----**-----**----**---------------- ** ** ** ** Extracellular ** ** ** ** ** ** Two sets of nomenclature have been used to identify the connexins. The first, and most commonly used, classifies the connexin molecules according to molecular weight, such as connexin43 (abbreviated to Cx43), indicating a connexin of molecular weight close to 43kDa. However, studies have revealed cases where clear functional homologues exist across species that have quite different molecular masses; therefore, an alternative nomenclature was proposed based on evolutionary considerations, which divides the family into two major subclasses, alpha and beta, each with a number of members []. Due to their ubiquity and overlapping tissue distributions, it has proved difficult to elucidate the functions of individual connexin isoforms. To circumvent this problem, particular connexin-encoding genes have been subjected to targeted-disruption in mice, and the phenotype of the resulting animals investigated. Around half the connexin isoforms have been investigated in this manner []. Further insight into the functional roles of connexins has come from the discovery that a number of human diseases are caused by mutations in connexin genes. For instance, mutations in Cx32 give rise to a form of inherited peripheral neuropathy called X-linked dominant Charcot-Marie-Tooth disease []. Similarly, mutations in Cx26 are responsible for both autosomal recessive and dominant forms of nonsyndromic deafness, a disorder characterised by hearing loss, with no apparent effects on other organ systems. This entry represents the cysteine rich domain of the connexins.; PDB: 2ZW3_F.
Probab=27.00 E-value=1.7e+02 Score=22.05 Aligned_cols=27 Identities=15% Similarity=0.066 Sum_probs=23.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy8156 237 SEKEKKMSRLWVGIWSALCATSCLFTV 263 (362)
Q Consensus 237 t~~e~~~~~~w~~v~s~lc~i~Tlftv 263 (362)
.+.||+..-..|.+.|++|++.++.=+
T Consensus 38 RPtEKtIfl~fM~~~s~vsi~L~l~El 64 (67)
T PF10582_consen 38 RPTEKTIFLIFMFAVSCVSILLNLAEL 64 (67)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999888644
No 50
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=26.38 E-value=2.5e+02 Score=25.26 Aligned_cols=56 Identities=14% Similarity=0.047 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHhcCCCCCCCCchHHHHHHHHHH-HHHHHHHHhhcC
Q psy8156 246 LWVGIWSALCATSCLFTVL----TFMIDSDRFRYPERPIIFLSVCYLM-VSITYIIGFMSG 301 (362)
Q Consensus 246 ~w~~v~s~lc~i~Tlftvl----TF~id~~rf~YPerpIifls~Cy~~-~Sl~~li~~~~~ 301 (362)
.|-.+-|+++.+..+..-. |--+|+..--.+--|++++.++-+. ..+||+++-+.|
T Consensus 39 r~~~~~si~t~~~g~~~g~~yl~~~~~D~~~~I~GlDP~~~~g~~t~a~g~lG~L~GP~~G 99 (173)
T PF08566_consen 39 RINLVSSIPTGLLGSSAGWAYLSTIEIDPTQQIMGLDPFMVYGLATLACGALGWLVGPSLG 99 (173)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHHHHHHHHHHHhcchHH
Confidence 3344444444444443333 3336654433445677888888776 667999975555
No 51
>KOG3821|consensus
Probab=26.28 E-value=33 Score=36.11 Aligned_cols=50 Identities=30% Similarity=0.736 Sum_probs=36.6
Q ss_pred cccccc-ccccccccccccccCCCcccCCcHhhhHHHhhcchhhhhhcCCCCCCCc
Q psy8156 73 VKCSPD-LQFFLCSMYAPVCTILERAIPPCRNLCLSARNGCEKLMNDFGFQWPETF 127 (362)
Q Consensus 73 ~~Cs~~-l~~fLCs~y~P~C~~~~~~~~PCRslCe~v~~~C~~~~~~~g~~WP~~l 127 (362)
.+|+.. ++. .|=|-|... ....||..+|..|.++|..-+......|-..+
T Consensus 244 ~~C~raLlkM----~yCp~CqGl-~~~kPC~gYC~NVmrGClA~~adLd~~W~~~i 294 (563)
T KOG3821|consen 244 EECSRALLKM----IYCPHCQGL-PSVKPCYGYCLNVMRGCLANQADLDPEWRNYI 294 (563)
T ss_pred hHHHHHHHHH----hcchhccCC-CccCCcHHHHHHHHHHHhhhhcccchHHHHHH
Confidence 489855 444 355789742 22789999999999999887776777776544
No 52
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=25.15 E-value=3.4e+02 Score=27.83 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy8156 243 MSRLWVGIWSALCATSCLFTVLTFMI 268 (362)
Q Consensus 243 ~~~~w~~v~s~lc~i~TlftvlTF~i 268 (362)
..-.+.+..+++.++.+++.++.|++
T Consensus 37 ~Sv~~~a~iaavwlil~ll~ll~~~~ 62 (418)
T cd07912 37 QSLLILASIPAACLILSLLFLLVYLI 62 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777788777777775554
No 53
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=24.26 E-value=3.4e+02 Score=27.79 Aligned_cols=67 Identities=18% Similarity=0.320 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHHHHHHHhhcC-CccccC
Q psy8156 241 KKMSRLWVGIWSALCAT------------SCLFTVLTFMIDSDRFRYPERPIIFLSVCYLMVSITYIIGFMSG-DKISCT 307 (362)
Q Consensus 241 ~~~~~~w~~v~s~lc~i------------~TlftvlTF~id~~rf~YPerpIifls~Cy~~~Sl~~li~~~~~-~~iaC~ 307 (362)
|..++-|+..|..+.+. .=+..|++++.-+.+-+- .-+.-...+.+.+++||....++. -.+.++
T Consensus 17 k~~~k~~i~~~i~~~l~~i~~~~~~~g~~~yl~~i~~~~~~p~~~~~--~~~~~~~~~~~g~~~g~~~~~l~~~~a~~aR 94 (459)
T PF10337_consen 17 KIMFKCWIAPWIALILCQIPPVARWLGTAGYLAPIISVIVPPGRPRG--KFLEAMILLLLGVCLGWAWGLLAMYIAVAAR 94 (459)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHhcchhHHHHHHHHHcCCCchHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 55789999988777665 223355555544432110 112223334444566666655442 344555
Q ss_pred CC
Q psy8156 308 KP 309 (362)
Q Consensus 308 ~~ 309 (362)
.+
T Consensus 95 ~~ 96 (459)
T PF10337_consen 95 PH 96 (459)
T ss_pred cC
Confidence 43
No 54
>PF10726 DUF2518: Protein of function (DUF2518); InterPro: IPR019664 This entry contains the Ycf51 protein family, which is conserved in Cyanobacteria. The function is not known.
Probab=22.87 E-value=1.2e+02 Score=26.55 Aligned_cols=59 Identities=22% Similarity=0.384 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCCc--hHHHHHHHHHHHHHHHHHHhh
Q psy8156 238 EKEKKMSRLWVGIWSALCATSCLFTVLTFMIDSD-RFRYPER--PIIFLSVCYLMVSITYIIGFM 299 (362)
Q Consensus 238 ~~e~~~~~~w~~v~s~lc~i~TlftvlTF~id~~-rf~YPer--pIifls~Cy~~~Sl~~li~~~ 299 (362)
+++-..+..|.++..+.. .++|++-|+..|. |||.=-. -.+-|++..+..+++|+-|..
T Consensus 4 ~~~~~~~~~W~~~~ti~~---~~lTilaFi~~WG~RFRLVGvT~F~~vLt~g~fal~~~~~~r~~ 65 (145)
T PF10726_consen 4 PELFLTYTQWLGIATIAL---AVLTILAFIFKWGIRFRLVGVTSFMLVLTVGCFALSLSYFPRVV 65 (145)
T ss_pred hHHHHHHHHHHHHHHHHH---HHHHHHHHHhccCceEEEecHHHHHHHHHHHHHHheeccCCCcc
Confidence 344455666766655554 4666788888886 6765321 224456677777777776653
No 55
>PF10854 DUF2649: Protein of unknown function (DUF2649); InterPro: IPR021217 This entry is represented by Spiroplasma phage 1-C74, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members in this family of proteins are also annotated as Plectrovirus orf 10 transmembrane proteins however currently no function is known.
Probab=22.67 E-value=78 Score=23.47 Aligned_cols=19 Identities=16% Similarity=0.457 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q psy8156 343 FFGMASSIWDVFVMASTTI 361 (362)
Q Consensus 343 ff~mAa~iWWviLt~tW~~ 361 (362)
|..+..-+|=|||-+||+.
T Consensus 37 Ylt~MiGiWiVilFLtWf~ 55 (67)
T PF10854_consen 37 YLTIMIGIWIVILFLTWFL 55 (67)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3445556899999999985
No 56
>PF01153 Glypican: Glypican; InterPro: IPR001863 Glypicans [, ] are a family of heparan sulphate proteoglycans which are anchored to cell membranes by a glycosylphosphatidylinositol (GPI) linkage. Six members (GPC1-6) are known in vertebrates []. Structurally, these proteins consist of three separate domains: A signal sequence; An extracellular domain of about 500 residues that contains 12 conserved cysteines probably involved in disulphide bonds and which also contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A C-terminal hydrophobic region which is post-translationally removed after formation of the GPI-anchor. ; GO: 0043395 heparan sulfate proteoglycan binding, 0005578 proteinaceous extracellular matrix, 0016020 membrane; PDB: 3ODN_A 4AD7_A 4ACR_C.
Probab=20.42 E-value=13 Score=39.35 Aligned_cols=49 Identities=29% Similarity=0.796 Sum_probs=33.2
Q ss_pred cccccc-ccccccccccccccCCCcccCCcHhhhHHHhhcchhhhhhcCCCCCCC
Q psy8156 73 VKCSPD-LQFFLCSMYAPVCTILERAIPPCRNLCLSARNGCEKLMNDFGFQWPET 126 (362)
Q Consensus 73 ~~Cs~~-l~~fLCs~y~P~C~~~~~~~~PCRslCe~v~~~C~~~~~~~g~~WP~~ 126 (362)
.+|... ++.--| |.|... ..++||+.+|..|.++|-.-+..++-.|-.+
T Consensus 236 ~~C~raL~kM~yC----p~C~G~-~~~kPC~~yC~NVmrGCLa~~a~Ld~~W~~~ 285 (557)
T PF01153_consen 236 PECSRALMKMWYC----PHCQGL-PSVKPCRGYCLNVMRGCLANQAELDPEWRNY 285 (557)
T ss_dssp CHHHHHHHHHHTC----CHHCT--TT--BBHHHHHHHHHHHTHHHHCCHHHHHHH
T ss_pred cHHHHHHHhCCcC----ccccCc-CCCCCchhHHHHHHHHHhhhHHhhhHHHHHH
Confidence 478854 555444 678632 3478999999999999976666676677654
Done!