RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8156
(362 letters)
>1ijy_A Frizzled homolog 8; WNT receptor, frizzled protein structure,
cysteine-rich, signaling protein; 1.35A {Mus musculus}
SCOP: a.141.1.1
Length = 130
Score = 144 bits (364), Expect = 8e-43
Identities = 56/123 (45%), Positives = 79/123 (64%), Gaps = 2/123 (1%)
Query: 27 HAKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSM 86
C+ IT+P C+ I Y T MPN H Q++AG EVHQ++PLV+++CSPDL+FFLCSM
Sbjct: 7 ELACQEITVPLCKGIGYEYTYMPNQFNHDTQDEAGLEVHQFWPLVEIQCSPDLKFFLCSM 66
Query: 87 YAPVCT-ILERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVG 145
Y P+C ++ +PPCR++C A+ GC LM +GF WP+ C + P PD+LC+
Sbjct: 67 YTPICLEDYKKPLPPCRSVCERAKAGCAPLMRQYGFAWPDRMRCDRLP-EQGNPDTLCMD 125
Query: 146 DNE 148
Sbjct: 126 YER 128
>1ijx_A Secreted frizzled-related sequence protein 3; WNT receptor,
frizzled protein structure, cysteine-rich, SIG protein;
1.90A {Mus musculus} SCOP: a.141.1.1
Length = 127
Score = 137 bits (347), Expect = 2e-40
Identities = 49/123 (39%), Positives = 70/123 (56%), Gaps = 5/123 (4%)
Query: 28 AKCETITIPFCQDIAYNETIMPNLLGHSKQEDAGFEVHQYFPLVKVKCSPDLQFFLCSMY 87
A CE + IP C+ + + T MPN L HS Q +A + Q+ L+ CSPDL FFLC+MY
Sbjct: 3 AACEPVRIPLCKSLPWEMTKMPNHLHHSTQANAILAMEQFEGLLGTHCSPDLLFFLCAMY 62
Query: 88 APVCTI--LERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFECSKFPLPSSGPDSLCVG 145
AP+CTI I PC+++C AR GCE ++ + WPE+ C + P+ G +C+
Sbjct: 63 APICTIDFQHEPIKPCKSVCERARQGCEPILIKYRHSWPESLACDELPVYDRG---VCIS 119
Query: 146 DNE 148
Sbjct: 120 PEA 122
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.0 bits (93), Expect = 0.001
Identities = 37/240 (15%), Positives = 62/240 (25%), Gaps = 79/240 (32%)
Query: 36 PFCQD-IAYNETIMPNLLGHSKQED----AGFEVHQYFPLVKVKCSPDLQFFLCSMYAPV 90
D I ++ + L+ + + G + ++ L +PD + L S P+
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW--LENPSNTPDKDY-LLS--IPI 236
Query: 91 CTILERAIPP------------CRNLCLSARNGCEKLMNDFGFQ--------------WP 124
+ P + L + L G W
Sbjct: 237 ------SCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE 290
Query: 125 ETFECSK----------------FPLPSSGPDSLCVGDNEEGGNGPDS--LCVGDNEEGG 166
F + +P S P + D+ E G S L +
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSI--LEDSLENNEGVPSPMLSI----SNL 344
Query: 167 KSSTLSPMIESNFGKDLRPG----VSYPNLPEN------AKD-YGFVCPLH-FKIPPGLD 214
+ + L G +S N +N + YG L K P GLD
Sbjct: 345 TQEQVQDYVNK-TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLD 403
Score = 33.1 bits (75), Expect = 0.16
Identities = 70/463 (15%), Positives = 126/463 (27%), Gaps = 195/463 (42%)
Query: 14 QITHIS-DHDIL-P--IHAKCETI------TIP-----FCQDIAYNETIMP-NL----LG 53
++H S +H +L P + +P F D +E P L LG
Sbjct: 10 TLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAAD---DEPTTPAELVGKFLG 66
Query: 54 HSKQEDAGFEVHQYFPLVKVKCSPDLQFF------------------------------L 83
+ +V Q+ ++ + L F L
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLC----LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKEL 122
Query: 84 CSMYAPVCTILERAIPPCRNLCL--SARNGCEKLMNDFGFQ------WPE------TFEC 129
Y + +R N L + G +L+ FG Q + E T+
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHV 182
Query: 130 SKFPLPSSGPDSL--CVGDNEEG----GNGPDSLCVGDNEEGG------KSSTLS-PMIE 176
L ++L + + G + L +N S +S P+I
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG 242
Query: 177 ----SNF-------G---KDLRP----------GV----------SYPNLPENAKDY--- 199
+++ G +LR G+ S+ + + +
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 200 ----GFVC----PLHFKIPPGLDYELKVGDKVEKNCGAP-----CDGMFFSEKEKKMSRL 246
G C P + +PP + + D +E N G P + + + +++
Sbjct: 303 LFFIGVRCYEAYP-NTSLPPSI-----LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT 356
Query: 247 --------WVGIWSAL-CATSCLFTVLT--------FMI-----------DSDRFRYPER 278
V I +L L V++ + D R + ER
Sbjct: 357 NSHLPAGKQVEI--SLVNGAKNL--VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Query: 279 PIIFLSVCYLMVSITYIIGFMSGDKISCTKPFSPPPEH-PHLA 320
+ F S +L V+ PF H L
Sbjct: 413 KLKF-SNRFLPVAS----------------PF-----HSHLLV 433
Score = 27.7 bits (61), Expect = 7.7
Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 54/150 (36%)
Query: 152 NGPDSLCVGDNEEGGKS--STLSPMI-ESNFGKDLRPGVSYPNLPENAKDYGFVCPLHFK 208
N P +L + E GK S MI E+ L+ + + E++ Y F+
Sbjct: 1667 NNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSY------TFR 1720
Query: 209 IPPG-LD----------------YELKVGDKVEKNCGAPCDGMF--FSEKEKKMSRLWVG 249
G L +E ++ P D F S +G
Sbjct: 1721 SEKGLLSATQFTQPALTLMEKAAFED-----LKSKGLIPADATFAGHS----------LG 1765
Query: 250 IWSALCATSCLFTVLTFMIDSD-----RFR 274
++AL + + V++ +R
Sbjct: 1766 EYAALASLA---DVMSI---ESLVEVVFYR 1789
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.43
Identities = 6/24 (25%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 303 KI-SCTKPFSPPPEHPHLAMVSTI 325
K+ + K ++ P LA+ +T+
Sbjct: 24 KLQASLKLYADDSA-PALAIKATM 46
>4acr_A Glypican-1; proteoglycan, glycosaminoglycans, heparan sulfate,
helical B glycoprotein, membrane protein; HET: NAG;
2.55A {Homo sapiens} PDB: 4ad7_A*
Length = 478
Score = 31.3 bits (70), Expect = 0.57
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 86 MYAPVCTILERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFE 128
+Y C + PC + C + GC D +W +
Sbjct: 253 VYCAHCLGVP-GARPCPDYCRNVLKGCLANQADLDAEWRNLLD 294
>3odn_A Dally-like protein; alpha helical bundle, hedgehog signaling,
hedgehog VIA CO- immunoprecipitation, membrane protein;
2.40A {Drosophila melanogaster}
Length = 506
Score = 30.2 bits (67), Expect = 1.2
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 86 MYAPVCTILERAIPPCRNLCLSARNGCEKLMNDFGFQWPETFE 128
+ C PC N C++ GC ++F +W
Sbjct: 231 QHCGACKGYT--EKPCTNYCVNVIKGCLHYQHEFDSEWENFAM 271
>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural
genomics, IDP90671, center for structural genomic
infectious diseases; HET: MSE; 1.87A {Campylobacter
jejuni subsp} PDB: 3o6d_A*
Length = 260
Score = 28.8 bits (65), Expect = 2.6
Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 11/51 (21%)
Query: 6 LISVSVGDQIT--------HISDHDILPIHAKCETITIPFCQDIAYNETIM 48
I GDQIT H D D+ I + P + A N+ I+
Sbjct: 32 FIVARHGDQITLHVREDRRHAQDFDLENI---IKFCKSPVNLECALNDEIL 79
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.1 bits (62), Expect = 3.4
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 187 VSYPNLPENAKDYG------FVCPLHFKIPPGLDYELKVGDKVEKNCG 228
++ ++ + A G CP PP + GD V CG
Sbjct: 2 MTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCG 49
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2,
protein struct initiative; 2.15A {Colwellia
psychrerythraea}
Length = 135
Score = 27.2 bits (61), Expect = 4.4
Identities = 7/46 (15%), Positives = 13/46 (28%), Gaps = 7/46 (15%)
Query: 272 RFRYPERPIIFLS---VCYLMVSITYIIGFMSG--DKISCTKPFSP 312
+I +S L + T + + TKP +
Sbjct: 69 AEHKSPASLILISGYDSGVLHSAETLALSCGLNVINTF--TKPINT 112
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.9 bits (62), Expect = 6.8
Identities = 20/135 (14%), Positives = 30/135 (22%), Gaps = 48/135 (35%)
Query: 13 DQITHISDHDI-LPIHAKCETITI-----PFCQDIAYNETIMPN--LLGHSKQEDAGFEV 64
D + S H + K E+ TI + + L GH K +
Sbjct: 1335 DDLGVASFHGTSTKANDKNESATINEMMKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWM- 1393
Query: 65 HQYFPLVKVKCSPDLQFFLCSMYAPVCTILERAIPPCRNL------------CLSARNGC 112
M + + IP RN L
Sbjct: 1394 ---------------------MNGALQILNSGIIPGNRNADNVDKILEQFEYVLYPSKTL 1432
Query: 113 EK------LMNDFGF 121
+ + FGF
Sbjct: 1433 KTDGVRAVSITSFGF 1447
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.141 0.455
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,551,896
Number of extensions: 323782
Number of successful extensions: 609
Number of sequences better than 10.0: 1
Number of HSP's gapped: 606
Number of HSP's successfully gapped: 14
Length of query: 362
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 267
Effective length of database: 4,049,298
Effective search space: 1081162566
Effective search space used: 1081162566
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.7 bits)