BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8157
(191 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YGR|A Chain A, Crystal Structure Of The Tandem Phosphatase Domain Of Rptp
Cd45
pdb|1YGR|B Chain B, Crystal Structure Of The Tandem Phosphatase Domain Of Rptp
Cd45
pdb|1YGU|A Chain A, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Cd45 With A Ptyr Peptide
pdb|1YGU|B Chain B, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Cd45 With A Ptyr Peptide
Length = 610
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 67 HAVRSPNKVIFMFENTEWTAQQVPGYEGRAGMAAILDINKSLDVTAVSEGIKKALPSYAR 126
H+ R ++ ++ ++ T W+ +Q+P E + ++ I + + L SEG K +
Sbjct: 485 HSKRKDSRTVYQYQYTNWSVEQLPA-EPKELISXIQVVKQKLPQKNSSEGNKH---HKST 540
Query: 127 PLFIRCLREVEMTGTY 142
PL I C + TG +
Sbjct: 541 PLLIHCRDGSQQTGIF 556
>pdb|2Y8K|A Chain A, Structure Of Ctgh5-Cbm6, An Arabinoxylan-Specific Xylanase
Length = 491
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 76/185 (41%), Gaps = 34/185 (18%)
Query: 12 PKVTKPKHDSSTLNDKPPKKASINLLKALQRY------LRFLWAARRVAQKDLTIADIFR 65
P P + SST N I++ + ++ Y L F +A V A+ +
Sbjct: 139 PVAWGPPYSSSTANPPGAVDMEIDVYRIIRTYAPETPVLLFSYA---VFGGKGGAAEALK 195
Query: 66 EHAVRSPNKVIFMFENTEWTAQQVPGYEGRAGMAAILDINKSLDVTAVSEGIKKALPS-- 123
+ +R+ NK +F EN WT + V + G AG AV E +K P
Sbjct: 196 D--IRAFNKAVFGNENAVWTNEAV-AFHGYAGWQET--------TIAVEELLKAGYPCFM 244
Query: 124 --YARPLFIRCLREVEMTGTYKLKKLDLQKEGFDPNVIQDRLYYLSSKGVYEELT-PEVY 180
YA + + +++ TY+L++L + F Y+ GV +++T PE +
Sbjct: 245 TEYAGGAWGSGMGGLDVELTYELERLGVSWLTFQ---------YIPPTGVSDDVTKPEYF 295
Query: 181 KDLVQ 185
LV+
Sbjct: 296 SALVE 300
>pdb|1VPA|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidylyltransferase (Tm1393) From Thermotoga Maritima
At 2.67 A Resolution
pdb|1VPA|B Chain B, Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate
Cytidylyltransferase (Tm1393) From Thermotoga Maritima
At 2.67 A Resolution
Length = 234
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 16/88 (18%)
Query: 105 NKSLDVTAVSEGIKKALPSY------ARPLFIR------CLREVEMTGTYKLKKLDLQKE 152
+S V + E ++K PSY ARP F+R LR TG L L+
Sbjct: 90 TRSQSVRSALEFLEKFSPSYVLVHDSARP-FLRKKHVSEVLRRARETGAATLA---LKNS 145
Query: 153 GFDPNVIQDRLYYLSSKGVYEELTPEVY 180
V DR+ Y+ KGVY LTP+ +
Sbjct: 146 DALVRVENDRIEYIPRKGVYRILTPQAF 173
>pdb|1MP9|A Chain A, Tbp From A Mesothermophilic Archaeon, Sulfolobus
Acidocaldarius
pdb|1MP9|B Chain B, Tbp From A Mesothermophilic Archaeon, Sulfolobus
Acidocaldarius
Length = 198
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 31 KASINLLKALQRYLRFL--WAARRVAQKDLTIADIFRE---HAVRSPNKVIFMFENTEWT 85
K++ L+KA++R ++ L + + + + I +I H + + +K F+ EN +
Sbjct: 75 KSTDELIKAVKRIIKTLKKYGMQLTGKPKIQIQNIVASANLHVIVNLDKAAFLLENNMYE 134
Query: 86 AQQVPG 91
+Q PG
Sbjct: 135 PEQFPG 140
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 56 KDLTIADIFREHAVRSPNKVIFMFENTEWT 85
D T+AD++R +A P++ FM + T
Sbjct: 4 HDFTLADVYRRNAALFPDRTAFMVDGVRLT 33
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 165 YLSSKGVYEELTPEVYKDLVQEFWK 189
Y+ +KG+ EEL E +L+ E WK
Sbjct: 470 YMRTKGISEELATESVMNLIDETWK 494
>pdb|3E3V|A Chain A, Crystal Structure Of Recx From Lactobacillus Salivarius
Length = 177
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Query: 104 INKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGFDPNVIQDRL 163
INK +D+ +++ +YA ++R + G K+ KL+L K+G D N+ +D L
Sbjct: 56 INKLIDLDLIND------KNYAES-YVRTMMNTSDKGP-KVIKLNLSKKGIDDNIAEDAL 107
Query: 164 YYLSSK 169
+ K
Sbjct: 108 ILYTDK 113
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase
1 In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase
1 In A Complex With Amp And Phenylalanine
Length = 563
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 56 KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQV 89
+D TI +F E + PN V + EN + T ++
Sbjct: 37 RDKTIHQLFEEQVSKRPNNVAIVCENEQLTYHEL 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,656,347
Number of Sequences: 62578
Number of extensions: 216498
Number of successful extensions: 576
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 571
Number of HSP's gapped (non-prelim): 15
length of query: 191
length of database: 14,973,337
effective HSP length: 93
effective length of query: 98
effective length of database: 9,153,583
effective search space: 897051134
effective search space used: 897051134
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)