BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8157
(191 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q91VE0|S27A4_MOUSE Long-chain fatty acid transport protein 4 OS=Mus musculus
GN=Slc27a4 PE=1 SV=1
Length = 643
Score = 97.4 bits (241), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 67/94 (71%), Gaps = 1/94 (1%)
Query: 88 QVPGYEGRAGMAAILDINKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKL 147
+VPG EGRAGMAA+ + D+ + ++ +KK LP YARP+F+R L E+ TGT+K +K
Sbjct: 540 EVPGTEGRAGMAAVASPISNCDLESFAQTLKKELPLYARPIFLRFLPELHKTGTFKFQKT 599
Query: 148 DLQKEGFDPNVIQDRLYYLSS-KGVYEELTPEVY 180
+L+KEGFDP+V++D L+YL + KG Y L E Y
Sbjct: 600 ELRKEGFDPSVVKDPLFYLDARKGCYVALDQEAY 633
>sp|Q4R3Y4|S27A4_MACFA Long-chain fatty acid transport protein 4 OS=Macaca fascicularis
GN=SLC27A4 PE=2 SV=1
Length = 643
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 66/94 (70%), Gaps = 1/94 (1%)
Query: 88 QVPGYEGRAGMAAILDINKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKL 147
+VPG EGRAGMAA+ + D+ ++ ++K LP YARP+F+R L E+ TGTYKL+K
Sbjct: 540 EVPGTEGRAGMAAVASPTGNCDLERFAQDLEKELPLYARPIFLRILPELHKTGTYKLQKT 599
Query: 148 DLQKEGFDPNVIQDRLYYLSS-KGVYEELTPEVY 180
+L+KEGFDP +++D L+YL + KG Y L E Y
Sbjct: 600 ELRKEGFDPAIVKDPLFYLDARKGRYVPLDQEAY 633
>sp|Q5RDY4|S27A4_PONAB Long-chain fatty acid transport protein 4 OS=Pongo abelii
GN=SLC27A4 PE=2 SV=1
Length = 643
Score = 93.6 bits (231), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Query: 88 QVPGYEGRAGMAAILDINKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKL 147
+VPG EGRAGMAA+ + D+ ++ ++K LP YARP+F+R L E+ TGTYK +K
Sbjct: 540 EVPGTEGRAGMAAVASPTGNCDLERFAQVLEKELPLYARPIFLRLLPELHKTGTYKFQKT 599
Query: 148 DLQKEGFDPNVIQDRLYYLSS-KGVYEELTPEVY 180
+L+KEGFDP +++D L+YL + KG Y L E Y
Sbjct: 600 ELRKEGFDPAIVKDPLFYLDARKGRYVPLDQEAY 633
>sp|Q6P1M0|S27A4_HUMAN Long-chain fatty acid transport protein 4 OS=Homo sapiens
GN=SLC27A4 PE=1 SV=1
Length = 643
Score = 93.6 bits (231), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 46/94 (48%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Query: 88 QVPGYEGRAGMAAILDINKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKL 147
+VPG EGRAGMAA+ + D+ ++ ++K LP YARP+F+R L E+ TGTYK +K
Sbjct: 540 EVPGTEGRAGMAAVASPTGNCDLERFAQVLEKELPLYARPIFLRLLPELHKTGTYKFQKT 599
Query: 148 DLQKEGFDPNVIQDRLYYL-SSKGVYEELTPEVY 180
+L+KEGFDP +++D L+YL + KG Y L E Y
Sbjct: 600 ELRKEGFDPAIVKDPLFYLDAQKGRYVPLDQEAY 633
>sp|Q6PCB7|S27A1_HUMAN Long-chain fatty acid transport protein 1 OS=Homo sapiens
GN=SLC27A1 PE=2 SV=1
Length = 646
Score = 90.9 bits (224), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 63/93 (67%), Gaps = 1/93 (1%)
Query: 89 VPGYEGRAGMAAILDINKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLD 148
VPG EG+AGMAA+ D + LD A+ + ++K L YARP+F+R L +V+ TGT+K++K
Sbjct: 544 VPGVEGKAGMAAVADPHSLLDPNAIYQELQKVLAPYARPIFLRLLPQVDTTGTFKIQKTR 603
Query: 149 LQKEGFDPNVIQDRLYYLSSK-GVYEELTPEVY 180
LQ+EGFDP DRL++L K G Y L VY
Sbjct: 604 LQREGFDPRQTSDRLFFLDLKQGHYLPLNEAVY 636
>sp|Q60714|S27A1_MOUSE Long-chain fatty acid transport protein 1 OS=Mus musculus
GN=Slc27a1 PE=1 SV=1
Length = 646
Score = 90.5 bits (223), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 65/97 (67%), Gaps = 1/97 (1%)
Query: 89 VPGYEGRAGMAAILDINKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLD 148
VPG EG+AGMAAI D + LD ++ + ++K L SYARP+F+R L +V+ TGT+K++K
Sbjct: 544 VPGVEGKAGMAAIADPHSQLDPNSMYQELQKVLASYARPIFLRLLPQVDTTGTFKIQKTR 603
Query: 149 LQKEGFDPNVIQDRLYYLSSK-GVYEELTPEVYKDLV 184
LQ+EGFDP DRL++L K G Y L V+ +
Sbjct: 604 LQREGFDPRQTSDRLFFLDLKQGRYVPLDERVHARIC 640
>sp|P97849|S27A1_RAT Long-chain fatty acid transport protein 1 OS=Rattus norvegicus
GN=Slc27a1 PE=2 SV=1
Length = 646
Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/97 (45%), Positives = 65/97 (67%), Gaps = 1/97 (1%)
Query: 89 VPGYEGRAGMAAILDINKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLD 148
VPG EG++GMAAI D + LD ++ + ++K L SYA+P+F+R L +V+ TGT+K++K
Sbjct: 544 VPGVEGKSGMAAIADPHNQLDPNSMYQELQKVLASYAQPIFLRLLPQVDTTGTFKIQKTR 603
Query: 149 LQKEGFDPNVIQDRLYYLSSK-GVYEELTPEVYKDLV 184
LQ+EGFDP DRL++L K G Y L V+ +
Sbjct: 604 LQREGFDPRQTSDRLFFLDLKQGRYLPLDERVHARIC 640
>sp|Q3ZKN0|S27A1_BOVIN Long-chain fatty acid transport protein 1 OS=Bos taurus GN=SLC27A1
PE=2 SV=1
Length = 646
Score = 85.1 bits (209), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
Query: 89 VPGYEGRAGMAAILDINKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLD 148
VPG EG+A MAAI D + L A+ E ++K L YARP+F+R L +V+ TGT+K++K
Sbjct: 544 VPGVEGKACMAAIADPHGRLSPNALYEELQKVLAPYARPIFLRLLPQVDTTGTFKIQKTR 603
Query: 149 LQKEGFDPNVIQDRLYYLSSK-GVYEELTPEVYKDLV 184
LQ EGFDP DRL++L K G Y L VY +
Sbjct: 604 LQHEGFDPRQTSDRLFFLDLKQGHYLPLDQGVYTRIC 640
>sp|Q9ES38|S27A5_RAT Bile acyl-CoA synthetase OS=Rattus norvegicus GN=Slc27a5 PE=1 SV=1
Length = 690
Score = 83.2 bits (204), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 89 VPGYEGRAGMAAI-LDINKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKL 147
VPG EG+ GMAA+ L K+ D + + ++ LP+YA P FIR +E+T TYKL K
Sbjct: 587 VPGCEGKVGMAAVKLAPGKTFDGQKLYQHVRSWLPAYATPHFIRIQDSLEITNTYKLVKS 646
Query: 148 DLQKEGFDPNVIQDRLYYLSSKG-VYEELTPEVYKDLVQEFWK 189
L +EGFD VI D LY L +K + L P+VY+ + + WK
Sbjct: 647 QLAREGFDVGVIADPLYILDNKAETFRSLMPDVYQAVCEGTWK 689
>sp|P97524|S27A2_RAT Very long-chain acyl-CoA synthetase OS=Rattus norvegicus GN=Slc27a2
PE=1 SV=1
Length = 620
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 80/146 (54%), Gaps = 13/146 (8%)
Query: 46 FLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVPGYEGRAGMAAI-LDI 104
F W VA + +ADI ++ E VPG+EGR GMA+I +
Sbjct: 485 FRWKGENVATTE--VADIV---------GLVDFVEEVNVYGVPVPGHEGRIGMASIKMKE 533
Query: 105 NKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGFDPNVIQDRLY 164
N + + + I + LPSY+RP F+R +E+TGT+K +K+ L +EGF+P+VI+D LY
Sbjct: 534 NYEFNGKKLFQHISEYLPSYSRPRFLRIQDTIEITGTFKHRKVTLMEEGFNPSVIKDTLY 593
Query: 165 YL-SSKGVYEELTPEVYKDLVQEFWK 189
++ ++ Y +T ++Y ++ + K
Sbjct: 594 FMDDTEKTYVPMTEDIYNAIIDKTLK 619
>sp|Q4LDG0|S27A5_MOUSE Bile acyl-CoA synthetase OS=Mus musculus GN=Slc27a5 PE=2 SV=2
Length = 689
Score = 80.1 bits (196), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 61/103 (59%), Gaps = 2/103 (1%)
Query: 89 VPGYEGRAGMAAI-LDINKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKL 147
VPG EG+ GMAA+ L K+ D + + ++ LP+YA P FIR +E+T TYKL K
Sbjct: 586 VPGCEGKVGMAAVKLAPGKTFDGQKLYQHVRSWLPAYATPHFIRIQDSLEITNTYKLVKS 645
Query: 148 DLQKEGFDPNVIQDRLYYLSSKG-VYEELTPEVYKDLVQEFWK 189
L +EGFD +I D LY L +K + L P+VY+ + + W
Sbjct: 646 RLVREGFDVGIIADPLYILDNKAQTFRSLMPDVYQAVCEGTWN 688
>sp|O88561|S27A3_MOUSE Long-chain fatty acid transport protein 3 OS=Mus musculus
GN=Slc27a3 PE=1 SV=2
Length = 667
Score = 79.0 bits (193), Expect = 2e-14, Method: Composition-based stats.
Identities = 42/98 (42%), Positives = 60/98 (61%), Gaps = 2/98 (2%)
Query: 89 VPGYEGRAGMAAI-LDINKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKL 147
VPG+EGRAGMAA+ L ++L++ + + + LP YARP F+R + T T+K +K+
Sbjct: 564 VPGHEGRAGMAALALRPPQALNLVQLYSHVSENLPPYARPRFLRLQESLATTETFKQQKV 623
Query: 148 DLQKEGFDPNVIQDRLYYLSSK-GVYEELTPEVYKDLV 184
+ EGFDP+V+ D LY L G Y LTP Y L+
Sbjct: 624 RMANEGFDPSVLSDPLYVLDQDIGAYLPLTPARYSALL 661
>sp|O14975|S27A2_HUMAN Very long-chain acyl-CoA synthetase OS=Homo sapiens GN=SLC27A2 PE=1
SV=2
Length = 620
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 60/96 (62%), Gaps = 2/96 (2%)
Query: 88 QVPGYEGRAGMAAI-LDINKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKK 146
VP +EGR GMA+I + N D + + I LPSYARP F+R +E+TGT+K +K
Sbjct: 516 HVPDHEGRIGMASIKMKENHEFDGKKLFQHIADYLPSYARPRFLRIQDTIEITGTFKHRK 575
Query: 147 LDLQKEGFDPNVIQDRLYYLSSKG-VYEELTPEVYK 181
+ L +EGF+P VI+D LY+L +Y +T ++Y
Sbjct: 576 MTLVEEGFNPAVIKDALYFLDDTAKMYVPMTEDIYN 611
>sp|O35488|S27A2_MOUSE Very long-chain acyl-CoA synthetase OS=Mus musculus GN=Slc27a2 PE=1
SV=2
Length = 620
Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 78/146 (53%), Gaps = 13/146 (8%)
Query: 46 FLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVPGYEGRAGMAAI-LDI 104
F W VA + +ADI ++ E VPG+EGR GMA++ +
Sbjct: 485 FRWKGENVATTE--VADIV---------GLVDFVEEVNVYGVPVPGHEGRIGMASLKIKE 533
Query: 105 NKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGFDPNVIQDRLY 164
N + + + I + LPSYARP F+R +E+TGT+K +K+ L +EGF+P VI+D LY
Sbjct: 534 NYEFNGKKLFQHIAEYLPSYARPRFLRIQDTIEITGTFKHRKVTLMEEGFNPTVIKDTLY 593
Query: 165 YL-SSKGVYEELTPEVYKDLVQEFWK 189
++ ++ + +T +Y ++ + K
Sbjct: 594 FMDDAEKTFVPMTENIYNAIIDKTLK 619
>sp|Q9Y2P4|S27A6_HUMAN Long-chain fatty acid transport protein 6 OS=Homo sapiens
GN=SLC27A6 PE=1 SV=1
Length = 619
Score = 75.5 bits (184), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 63/98 (64%), Gaps = 2/98 (2%)
Query: 89 VPGYEGRAGMAAI-LDINKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKL 147
+ GYEGRAGMA+I L N SLD+ V E + LP+YA P F+R ++E TGT+KL K
Sbjct: 516 ISGYEGRAGMASIILKPNTSLDLEKVYEQVVTFLPAYACPRFLRIQEKMEATGTFKLLKH 575
Query: 148 DLQKEGFDPNVIQDRLYYLSS-KGVYEELTPEVYKDLV 184
L ++GF+P I + LY++ + K Y LT E+Y ++
Sbjct: 576 QLVEDGFNPLKISEPLYFMDNLKKSYVLLTRELYDQIM 613
>sp|Q5K4L6|S27A3_HUMAN Long-chain fatty acid transport protein 3 OS=Homo sapiens
GN=SLC27A3 PE=2 SV=3
Length = 730
Score = 75.5 bits (184), Expect = 2e-13, Method: Composition-based stats.
Identities = 47/141 (33%), Positives = 70/141 (49%), Gaps = 13/141 (9%)
Query: 46 FLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVPGYEGRAGMAA-ILDI 104
F W VA + +A++F + + + VPG+EGRAGMAA +L
Sbjct: 595 FRWKGENVATTE--VAEVF---------EALDFLQEVNVYGVTVPGHEGRAGMAALVLRP 643
Query: 105 NKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGFDPNVIQDRLY 164
+LD+ + + + LP YARP F+R + T T+K +K+ + EGFDP+ + D LY
Sbjct: 644 PHALDLMQLYTHVSENLPPYARPRFLRLQESLATTETFKQQKVRMANEGFDPSTLSDPLY 703
Query: 165 YLSSK-GVYEELTPEVYKDLV 184
L G Y LT Y L+
Sbjct: 704 VLDQAVGAYLPLTTARYSALL 724
>sp|Q9Y2P5|S27A5_HUMAN Bile acyl-CoA synthetase OS=Homo sapiens GN=SLC27A5 PE=1 SV=1
Length = 690
Score = 71.2 bits (173), Expect = 3e-12, Method: Composition-based stats.
Identities = 37/103 (35%), Positives = 62/103 (60%), Gaps = 2/103 (1%)
Query: 89 VPGYEGRAGMAAI-LDINKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKL 147
VPG EG+ GMAA+ L ++ D + + ++ LP+YA P FIR +E+T T+KL K
Sbjct: 587 VPGCEGKVGMAAVQLAPGQTFDGEKLYQHVRAWLPAYATPHFIRIQDAMEVTSTFKLMKT 646
Query: 148 DLQKEGFDPNVIQDRLYYLSSKG-VYEELTPEVYKDLVQEFWK 189
L +EGF+ ++ D L+ L ++ + LT E+Y+ + + W+
Sbjct: 647 RLVREGFNVGIVVDPLFVLDNRAQSFRPLTAEMYQAVCEGTWR 689
>sp|P38225|FAT1_YEAST Very long-chain fatty acid transport protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=FAT1 PE=1
SV=2
Length = 669
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 60/98 (61%), Gaps = 12/98 (12%)
Query: 88 QVPGYEGRAGMAAILDINKSLDVTAVSEGIKKA-----LPSYARPLFIRCLREVEMTGTY 142
+VP YEGRAG A I + SLD+TA ++ + + LPSYA PLF++ + E++MT +
Sbjct: 561 KVPKYEGRAGFAVIKLTDNSLDITAKTKLLNDSLSRLNLPSYAMPLFVKFVDEIKMTDNH 620
Query: 143 K-LKKLDLQK---EGFDPNVIQDRLYYLSSKGVYEELT 176
K LKK+ ++ +G D N D +++L + YE LT
Sbjct: 621 KILKKVYREQKLPKGLDGN---DTIFWLKNYKRYEVLT 655
>sp|Q8J0E9|CEFD1_ACRCH Isopenicillin N epimerase component 1 OS=Acremonium chrysogenum
GN=cefD1 PE=3 SV=1
Length = 609
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 14/93 (15%)
Query: 88 QVPGYEGRAGMAAILDINK----SLDVTAVSEGIKKALPSYARPLFIRCLREVE--MTGT 141
QVP ++GRAG AAI N +LD + ++ ++ LPSYA P+FIR V T
Sbjct: 489 QVPNHDGRAGCAAIALKNAATPDTLDWSRLTSLLRSELPSYAVPVFIRVRETVGGMSTDN 548
Query: 142 YKLKKLDLQKEGFDPNVI--------QDRLYYL 166
+K K+ L+ EG DP + +DR ++L
Sbjct: 549 HKHNKVPLRDEGVDPRSMGSKVPGSEKDRFFWL 581
>sp|O42633|FAT1_COCHE Fatty acid transporter protein OS=Cochliobolus heterostrophus
GN=FAT1 PE=3 SV=1
Length = 643
Score = 50.4 bits (119), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
Query: 89 VPGYEGRA-GMAAILDINKSLDV--TAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLK 145
VPG +GR + +D+ A+++ + LP YA PLF+R +E TGT K++
Sbjct: 536 VPGNDGRVRSLNCHGRRRDRVDIRFAALAKHARDRLPGYAVPLFLRVTPALEYTGTLKIQ 595
Query: 146 KLDLQKEGFDPNVI--QDRLYYL 166
K L++EG DP+ I +D+LY+L
Sbjct: 596 KGRLKQEGIDPDKISGEDKLYWL 618
>sp|P08575|PTPRC_HUMAN Receptor-type tyrosine-protein phosphatase C OS=Homo sapiens GN=PTPRC
PE=1 SV=2
Length = 1304
Score = 33.5 bits (75), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 67 HAVRSPNKVIFMFENTEWTAQQVPGYEGRAGMAAILDINKSLDVTAVSEGIKKALPSYAR 126
H+ R ++ ++ ++ T W+ +Q+P E + ++ I + + L SEG K +
Sbjct: 1106 HSKRKDSRTVYQYQYTNWSVEQLPA-EPKELISMIQVVKQKLPQKNSSEGNKH---HKST 1161
Query: 127 PLFIRCLREVEMTGTY 142
PL I C + TG +
Sbjct: 1162 PLLIHCRDGSQQTGIF 1177
>sp|O30409|TYCC_BREPA Tyrocidine synthase 3 OS=Brevibacillus parabrevis GN=tycC PE=1 SV=1
Length = 6486
Score = 32.0 bits (71), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 85 TAQQVPGYE---GRAGMAAILDINKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGT 141
TA V YE G++ +AA ++ LDVT + + K LPSY P L ++ +T
Sbjct: 2958 TAAVVVVYEDQLGQSALAAYFTADEQLDVTKLWSHLSKRLPSYMIPAHFVQLDQLPLTPN 3017
Query: 142 YKLKKLDLQK 151
K+ K L K
Sbjct: 3018 GKVDKKALPK 3027
>sp|Q4K5I3|MIAB_PSEF5 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)
GN=miaB PE=3 SV=1
Length = 442
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 19/135 (14%)
Query: 1 MTSKTDVELGFPKVTKPKHDSSTLNDKPPKKASINLLKALQRYLRFLWAARRVAQK---- 56
+T V++ FP++ K H D P A +++++ +Y F ++
Sbjct: 120 ITKLPQVDVSFPEIEKFDHLPEPRIDGP--SAYVSVMEGCSKYCTFCVVPYTRGEEVSRP 177
Query: 57 -DLTIADIFR--EHAVRSPNKVIFMFENTEWTAQQVPGYEGRAGMAAILDINKSLDVTAV 113
D IA+I E+ VR Q V GY G+ + D+ + + V A
Sbjct: 178 FDDVIAEIIHLAENGVR----------EVTLLGQNVNGYRGQTHDGRMADLAELIRVVAA 227
Query: 114 SEGIKKALPSYARPL 128
+GI++ + + PL
Sbjct: 228 IDGIERIRYTTSHPL 242
>sp|A5IMI1|ISPD_THEP1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 /
DSM 13995) GN=ispD PE=3 SV=1
Length = 222
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 16/88 (18%)
Query: 105 NKSLDVTAVSEGIKKALPSY------ARPLFIR------CLREVEMTGTYKLKKLDLQKE 152
+S V + E ++K PSY ARP F+R LR TG L L+
Sbjct: 78 TRSQSVRSALEFLEKFSPSYVLVHDSARP-FLRKKHVSEVLRRARETGAATLA---LKNS 133
Query: 153 GFDPNVIQDRLYYLSSKGVYEELTPEVY 180
V DR+ Y+ KGVY LTP+ +
Sbjct: 134 DALVRVENDRMEYIPRKGVYRILTPQAF 161
>sp|Q9X1B3|ISPD_THEMA 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM
3109 / JCM 10099) GN=ispD PE=1 SV=1
Length = 222
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 16/88 (18%)
Query: 105 NKSLDVTAVSEGIKKALPSY------ARPLFIR------CLREVEMTGTYKLKKLDLQKE 152
+S V + E ++K PSY ARP F+R LR TG L L+
Sbjct: 78 TRSQSVRSALEFLEKFSPSYVLVHDSARP-FLRKKHVSEVLRRARETGAATLA---LKNS 133
Query: 153 GFDPNVIQDRLYYLSSKGVYEELTPEVY 180
V DR+ Y+ KGVY LTP+ +
Sbjct: 134 DALVRVENDRIEYIPRKGVYRILTPQAF 161
>sp|B1LBT2|ISPD_THESQ 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
OS=Thermotoga sp. (strain RQ2) GN=ispD PE=3 SV=1
Length = 222
Score = 30.4 bits (67), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 16/88 (18%)
Query: 105 NKSLDVTAVSEGIKKALPSY------ARPLFIR------CLREVEMTGTYKLKKLDLQKE 152
+S V + E ++K PSY ARP F+R LR TG L L+
Sbjct: 78 TRSQSVRSALEFLEKFSPSYVLVHDSARP-FLRKKHVSEVLRRARETGAATLA---LKNS 133
Query: 153 GFDPNVIQDRLYYLSSKGVYEELTPEVY 180
V DR+ Y+ KGVY LTP+ +
Sbjct: 134 DALVRVENDRIEYIPRKGVYRILTPQAF 161
>sp|Q9PQY9|Y155_UREPA Uncharacterized protein UU155 OS=Ureaplasma parvum serovar 3
(strain ATCC 700970) GN=UU155 PE=4 SV=1
Length = 229
Score = 30.4 bits (67), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 30 KKASINLLKALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWT--AQ 87
K +I +L+ + Y+ F W +R+ + ++ +IF +H + + F+ E+ Q
Sbjct: 66 NKTNIVILENVSCYINFNWEEKRIIMRVVSFDNIFYKHQLSEQQTIDFVSAEKEYNYQTQ 125
Query: 88 QVPGYEGRAGMAAILD 103
V Y I++
Sbjct: 126 TVNSYSNSDDEIEIIN 141
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,213,714
Number of Sequences: 539616
Number of extensions: 2702203
Number of successful extensions: 6665
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 6613
Number of HSP's gapped (non-prelim): 54
length of query: 191
length of database: 191,569,459
effective HSP length: 111
effective length of query: 80
effective length of database: 131,672,083
effective search space: 10533766640
effective search space used: 10533766640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)