Query psy8157
Match_columns 191
No_of_seqs 182 out of 1234
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 20:03:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8157.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8157hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t5h_X 4-chlorobenzoyl COA lig 99.8 4.2E-21 1.4E-25 173.1 6.2 131 11-153 358-502 (504)
2 4fuq_A Malonyl COA synthetase; 99.8 7.7E-21 2.6E-25 171.8 6.7 135 9-155 352-500 (503)
3 3r44_A Fatty acyl COA syntheta 99.8 9.1E-21 3.1E-25 171.8 5.2 133 9-153 367-511 (517)
4 3g7s_A Long-chain-fatty-acid-- 99.8 6.8E-21 2.3E-25 173.6 4.1 138 9-158 388-545 (549)
5 3ni2_A 4-coumarate:COA ligase; 99.8 1.4E-20 4.9E-25 171.0 5.8 133 9-153 387-533 (536)
6 3ipl_A 2-succinylbenzoate--COA 99.8 4.8E-20 1.6E-24 165.5 7.3 134 9-156 353-498 (501)
7 1mdb_A 2,3-dihydroxybenzoate-A 99.8 4.2E-20 1.4E-24 168.3 5.2 132 9-152 383-528 (539)
8 3nyq_A Malonyl-COA ligase; A/B 99.8 4.3E-20 1.5E-24 167.2 4.8 132 9-152 358-505 (505)
9 3etc_A AMP-binding protein; ad 99.8 3.7E-20 1.3E-24 170.8 3.3 131 12-154 432-578 (580)
10 2d1s_A Luciferase, luciferin 4 99.8 7.8E-20 2.7E-24 167.0 3.9 133 9-153 394-541 (548)
11 3l8c_A D-alanine--poly(phospho 99.8 7.4E-20 2.5E-24 165.1 1.9 137 10-157 354-514 (521)
12 1amu_A GRSA, gramicidin synthe 99.8 1.9E-19 6.5E-24 165.4 4.3 133 10-155 378-529 (563)
13 3ivr_A Putative long-chain-fat 99.8 1.2E-20 4.1E-25 170.0 -4.4 137 9-157 352-503 (509)
14 3c5e_A Acyl-coenzyme A synthet 99.8 1.8E-19 6.1E-24 165.8 2.7 134 11-156 412-563 (570)
15 1v25_A Long-chain-fatty-acid-C 99.7 5.6E-20 1.9E-24 167.5 -1.0 134 9-154 388-535 (541)
16 3e7w_A D-alanine--poly(phospho 99.7 3.3E-19 1.1E-23 160.9 4.0 137 9-157 349-505 (511)
17 1pg4_A Acetyl-COA synthetase; 99.7 8.1E-19 2.8E-23 163.9 5.6 132 12-155 471-621 (652)
18 3fce_A D-alanine--poly(phospho 99.7 7.8E-19 2.7E-23 158.3 4.0 137 9-157 350-506 (512)
19 4gr5_A Non-ribosomal peptide s 99.7 3.4E-20 1.2E-24 170.0 -5.2 132 10-153 415-569 (570)
20 3o83_A Peptide arylation enzym 99.7 6.3E-20 2.2E-24 167.3 -4.1 135 9-155 392-540 (544)
21 4gs5_A Acyl-COA synthetase (AM 99.7 3.1E-18 1.1E-22 149.5 6.4 102 45-155 252-354 (358)
22 2v7b_A Benzoate-coenzyme A lig 99.7 1.7E-18 5.9E-23 156.6 4.6 131 9-152 383-529 (529)
23 3rix_A Luciferase, luciferin 4 99.7 2.8E-19 9.6E-24 163.0 -4.5 135 9-155 392-541 (550)
24 1ry2_A Acetyl-coenzyme A synth 99.7 4.5E-18 1.6E-22 159.5 3.5 133 11-155 479-637 (663)
25 3rg2_A Enterobactin synthase c 99.7 1.7E-17 5.8E-22 153.5 6.2 131 8-152 386-531 (617)
26 3tsy_A Fusion protein 4-coumar 99.7 1.1E-18 3.6E-23 169.4 -4.6 135 9-155 434-582 (979)
27 3ite_A SIDN siderophore synthe 99.7 4.6E-18 1.6E-22 154.9 -1.3 134 10-155 380-543 (562)
28 4dg8_A PA1221; ANL superfamily 99.6 1.1E-16 3.6E-21 149.3 0.7 129 9-155 365-513 (620)
29 2vsq_A Surfactin synthetase su 99.6 4.9E-16 1.7E-20 155.2 3.5 131 9-152 808-957 (1304)
30 3kxw_A Saframycin MX1 syntheta 99.5 2.9E-16 1E-20 143.1 -5.7 135 9-157 404-569 (590)
31 3lax_A Phenylacetate-coenzyme 99.5 5.6E-14 1.9E-18 103.4 5.5 94 45-151 6-107 (109)
32 3gqw_A Fatty acid AMP ligase; 99.4 6.6E-15 2.3E-19 133.3 -1.4 131 9-153 416-561 (576)
33 3gxs_A Phenylacetate-coenzyme 99.3 1E-12 3.6E-17 97.0 5.9 90 45-147 6-102 (109)
34 2y4o_A Phenylacetate-coenzyme 99.3 8.5E-13 2.9E-17 116.7 2.9 95 45-151 337-440 (443)
35 2y27_A Phenylacetate-coenzyme 99.3 8.8E-13 3E-17 116.5 2.0 95 45-152 335-436 (437)
36 3qov_A Phenylacetate-coenzyme 99.2 5.6E-12 1.9E-16 111.2 4.5 93 45-151 333-433 (436)
37 2zbc_A 83AA long hypothetical 26.9 1.2E+02 0.004 19.3 4.9 46 63-123 17-62 (83)
No 1
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=99.82 E-value=4.2e-21 Score=173.10 Aligned_cols=131 Identities=11% Similarity=0.086 Sum_probs=110.9
Q ss_pred cccccCccCCCCCCCCCCCcchh-------hhhhHhHhhhh-----eEEeceeeeeccCcchHHHHHHHHHhCCCcccce
Q psy8157 11 FPKVTKPKHDSSTLNDKPPKKAS-------INLLKALQRYL-----RFLWAARRVAQKDLTIADIFREHAVRSPNKVIFM 78 (191)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-------~rdl~~l~~~l-----~i~~~g~nv~~~e~~Ve~~~e~~l~~hP~k~~~~ 78 (191)
-|.+|.||+++.+.+...|.++| +.|-.|...++ +|+.+|+||++.+ || ++|.+||+
T Consensus 358 g~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~e--IE----~~l~~~p~----- 426 (504)
T 1t5h_X 358 SDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSE--IE----RVLGTAPG----- 426 (504)
T ss_dssp CTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHH--HH----HHHTTSTT-----
T ss_pred CceeeceecCCchhhhhhhcCCccccCcEEEECCCceEEEeCcccCEEEECCEEECHHH--HH----HHHHhCCC-----
Confidence 78999999998887777777777 23333333232 5688999999999 85 56689999
Q ss_pred eeeEEEEEEecCCCCCceEEEEEE-cCCCCCCHHHHHHHHHh-cCCCCCcccEEEEeccCCCCCCCCcchHHHhhcc
Q psy8157 79 FENTEWTAQQVPGYEGRAGMAAIL-DINKSLDVTAVSEGIKK-ALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEG 153 (191)
Q Consensus 79 V~eaaVvGVpd~~~~ge~~~A~Vv-~~g~~~~~e~l~~~l~~-~Lp~ykvP~~v~~v~eLP~T~tGKi~K~~Lr~~~ 153 (191)
|.||+|+|++++ ..|+.++|+|+ .++...+.++|.++|++ +||.|++|+.+.++++||+|++|||+|++|++..
T Consensus 427 V~~a~Vv~~~~~-~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~ 502 (504)
T 1t5h_X 427 VTEVVVIGLADQ-RWGQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQQV 502 (504)
T ss_dssp EEEEEEEEEECS-SSSEEEEEEEEECTTCCCCHHHHHHHHHTSSCCGGGSCSEEEECSCCCBCTTSCBCHHHHHHHH
T ss_pred cceEEEEEeecC-CCCcEEEEEEEecCCcCcCHHHHHHHHhhccCcccccceEEEEhhhCCCCCCCCEeHHHHHHHh
Confidence 999999999987 46888899998 77777899999999998 9999999999999999999999999999999753
No 2
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=99.82 E-value=7.7e-21 Score=171.78 Aligned_cols=135 Identities=15% Similarity=0.091 Sum_probs=113.8
Q ss_pred eCcccccCccCCCCCCCCCCCc-chh-------hhhhHhHhhhh-----eEEeceeeeeccCcchHHHHHHHHHhCCCcc
Q psy8157 9 LGFPKVTKPKHDSSTLNDKPPK-KAS-------INLLKALQRYL-----RFLWAARRVAQKDLTIADIFREHAVRSPNKV 75 (191)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~-~~~-------~rdl~~l~~~l-----~i~~~g~nv~~~e~~Ve~~~e~~l~~hP~k~ 75 (191)
++=|.|+.||+++.+.+...|. .+| +.|-.|...++ +++.+|+||++.| || ++|.+||+
T Consensus 352 v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~e--IE----~~l~~~p~-- 423 (503)
T 4fuq_A 352 VKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKE--IE----SEIDAMPG-- 423 (503)
T ss_dssp EESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEETTEEECHHH--HH----HHHHTSTT--
T ss_pred EECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEECCEEECHHH--HH----HHHHhCCC--
Confidence 4458999999998888877776 555 33333433333 6789999999999 86 56689999
Q ss_pred cceeeeEEEEEEecCCCCCceEEEEEE-cCCCCCCHHHHHHHHHhcCCCCCcccEEEEeccCCCCCCCCcchHHHhhccC
Q psy8157 76 IFMFENTEWTAQQVPGYEGRAGMAAIL-DINKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGF 154 (191)
Q Consensus 76 ~~~V~eaaVvGVpd~~~~ge~~~A~Vv-~~g~~~~~e~l~~~l~~~Lp~ykvP~~v~~v~eLP~T~tGKi~K~~Lr~~~~ 154 (191)
|.+|+|+|++++ ..|+.++|+|+ .++...+.++++++|+++||.|++|+.|.++++||+|++||++|++|++...
T Consensus 424 ---V~~a~vv~~~~~-~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~~ 499 (503)
T 4fuq_A 424 ---VVESAVIGVPHA-DFGEGVTAVVVRDKGATIDEAQVLHGLDGQLAKFKMPKKVIFVDDLPRNTMGKVQKNVLRETYK 499 (503)
T ss_dssp ---EEEEEEEEEEET-TTEEEEEEEEEECTTCCCCHHHHHHHHBTTBCGGGCCSEEEEESCCCBCTTSCBCHHHHHHHTT
T ss_pred ---eeEEEEEEeEch-hcCceeEEEEEeCCCCCCCHHHHHHHHHhhcccCCCCCEEEEECCCCCCcccceeHHHHHHHHH
Confidence 999999999997 46788888888 7788889999999999999999999999999999999999999999998754
Q ss_pred C
Q psy8157 155 D 155 (191)
Q Consensus 155 ~ 155 (191)
+
T Consensus 500 ~ 500 (503)
T 4fuq_A 500 D 500 (503)
T ss_dssp T
T ss_pred H
Confidence 3
No 3
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=99.81 E-value=9.1e-21 Score=171.85 Aligned_cols=133 Identities=11% Similarity=0.007 Sum_probs=112.1
Q ss_pred eCcccccCccCCCCCCCCCCCcchh-------hhhhHhHhhhh-----eEEeceeeeeccCcchHHHHHHHHHhCCCccc
Q psy8157 9 LGFPKVTKPKHDSSTLNDKPPKKAS-------INLLKALQRYL-----RFLWAARRVAQKDLTIADIFREHAVRSPNKVI 76 (191)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~rdl~~l~~~l-----~i~~~g~nv~~~e~~Ve~~~e~~l~~hP~k~~ 76 (191)
++=|.|+.||+++.+.+...|..+| +.|-.|...++ +|+.+|+||++.| || ++|.+||+
T Consensus 367 v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~e--IE----~~l~~~p~--- 437 (517)
T 3r44_A 367 IKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAE--IE----SVIIGVPG--- 437 (517)
T ss_dssp EEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEECGGGCEEETTEEECHHH--HH----HHHTTSTT---
T ss_pred EeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEecCCcCEEEECCEEECHHH--HH----HHHHhCCC---
Confidence 3458999999999888888888887 22333333232 6789999999999 86 56789999
Q ss_pred ceeeeEEEEEEecCCCCCceEEEEEEcCCCCCCHHHHHHHHHhcCCCCCcccEEEEeccCCCCCCCCcchHHHhhcc
Q psy8157 77 FMFENTEWTAQQVPGYEGRAGMAAILDINKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEG 153 (191)
Q Consensus 77 ~~V~eaaVvGVpd~~~~ge~~~A~Vv~~g~~~~~e~l~~~l~~~Lp~ykvP~~v~~v~eLP~T~tGKi~K~~Lr~~~ 153 (191)
|.+|+|+|++++ ..|+.++|+|+.++...+.++|+++|+++||.|++|+.+.++++||+|++|||+|+.|+++.
T Consensus 438 --V~~~~Vv~~~~~-~~g~~~~a~v~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~~ 511 (517)
T 3r44_A 438 --VSEVAVIGLPDE-KWGEIAAAIVVADQNEVSEQQIVEYCGTRLARYKLPKKVIFAEAIPRNPTGKILKTVLREQY 511 (517)
T ss_dssp --EEEEEEEEEEET-TTEEEEEEEEEECTTTCCHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTCCBCHHHHHHHH
T ss_pred --EeEEEEEecccc-ccCceEEEEEECCCCCCCHHHHHHHHHHhCCCCCCCCEEEEECCCCCCCCcCccHHHHHHHH
Confidence 999999999987 46788777777667778899999999999999999999999999999999999999999864
No 4
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=99.81 E-value=6.8e-21 Score=173.64 Aligned_cols=138 Identities=12% Similarity=0.103 Sum_probs=78.4
Q ss_pred eCcccccCccCCCCCCCCCCC---cch--h-------hhhhHhHhhhh-----eEEeceeeeeccCcchHHHHHHHHHhC
Q psy8157 9 LGFPKVTKPKHDSSTLNDKPP---KKA--S-------INLLKALQRYL-----RFLWAARRVAQKDLTIADIFREHAVRS 71 (191)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~---~~~--~-------~rdl~~l~~~l-----~i~~~g~nv~~~e~~Ve~~~e~~l~~h 71 (191)
+.=|.||+||+++.+.+...| ..+ | +.|-.|...|+ +|+.+|+||++.| || ++|.+|
T Consensus 388 v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~e--IE----~~l~~~ 461 (549)
T 3g7s_A 388 IRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFE--LE----ALLMKH 461 (549)
T ss_dssp EESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEEECTTSCEEEEEEC------------CHH--HH----HHHTTS
T ss_pred EECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEEEcCCceEEEeccccceEEECCEEECHHH--HH----HHHHhC
Confidence 345899999999999988877 455 5 33333333333 5688999999999 85 667899
Q ss_pred CCcccceeeeEEEEEEecCCCCCceEEEEEE-cCC--CCCCHHHHHHHHHhcCCCCCcccEEEEeccCCCCCCCCcchHH
Q psy8157 72 PNKVIFMFENTEWTAQQVPGYEGRAGMAAIL-DIN--KSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLD 148 (191)
Q Consensus 72 P~k~~~~V~eaaVvGVpd~~~~ge~~~A~Vv-~~g--~~~~~e~l~~~l~~~Lp~ykvP~~v~~v~eLP~T~tGKi~K~~ 148 (191)
|+ |.+|+|+|++++ ..|+.++|+|+ .++ ...+.++|+++|+++||.|++|+.|.++++||+|++|||+|+.
T Consensus 462 p~-----V~~a~Vv~~~~~-~~g~~~~a~vv~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~ 535 (549)
T 3g7s_A 462 EA-----VMDVAVIGKPDE-EAGEVPKAFIVLKPEYRGKVDEEDIIEWVRERISGYKRVREVEFVEELPRTASGKLLRRL 535 (549)
T ss_dssp TT-----EEEEEEECCCC-------CEEEEEECSTTTTSCCHHHHHHHHHTTCC-----CCCCEEEECC-----------
T ss_pred CC-----eeeEEEEeeEcc-ccCceEEEEEEECCCccCcCCHHHHHHHHHHhccCcccceEEEEeccCCCCCCcCEeHHH
Confidence 99 999999999987 46788889888 665 5678999999999999999999999999999999999999999
Q ss_pred HhhccCCCCC
Q psy8157 149 LQKEGFDPNV 158 (191)
Q Consensus 149 Lr~~~~~~~~ 158 (191)
|++......+
T Consensus 536 L~~~~~~~~~ 545 (549)
T 3g7s_A 536 LREKEAEGHH 545 (549)
T ss_dssp ----------
T ss_pred HHHHhhcccc
Confidence 9988766543
No 5
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=99.81 E-value=1.4e-20 Score=171.02 Aligned_cols=133 Identities=10% Similarity=0.063 Sum_probs=110.3
Q ss_pred eCcccccCccCCCCCCCCCCC-cchh-------hhhhHhHhhhh-----eEEeceeeeeccCcchHHHHHHHHHhCCCcc
Q psy8157 9 LGFPKVTKPKHDSSTLNDKPP-KKAS-------INLLKALQRYL-----RFLWAARRVAQKDLTIADIFREHAVRSPNKV 75 (191)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~-~~~~-------~rdl~~l~~~l-----~i~~~g~nv~~~e~~Ve~~~e~~l~~hP~k~ 75 (191)
+.=|.||+||+++.+.+...| ..+| +.|-.|...++ +|+.+|+||++.+ || ++|.+||+
T Consensus 387 v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~e--IE----~~l~~~p~-- 458 (536)
T 3ni2_A 387 IRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAE--LE----ALLIAHPE-- 458 (536)
T ss_dssp EESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSCCEEETTEEECHHH--HH----HHHHTSTT--
T ss_pred EeCcccchhhcCChhHHHhhccCCCceEcccEEEEcCCceEEEEecccceEEECCEEECHHH--HH----HHHHhCCC--
Confidence 455899999998877766555 3455 23333333333 6788999999999 86 56689999
Q ss_pred cceeeeEEEEEEecCCCCCceEEEEEE-cCCCCCCHHHHHHHHHhcCCCCCcccEEEEeccCCCCCCCCcchHHHhhcc
Q psy8157 76 IFMFENTEWTAQQVPGYEGRAGMAAIL-DINKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEG 153 (191)
Q Consensus 76 ~~~V~eaaVvGVpd~~~~ge~~~A~Vv-~~g~~~~~e~l~~~l~~~Lp~ykvP~~v~~v~eLP~T~tGKi~K~~Lr~~~ 153 (191)
|.+|+|+|++++ ..|+.++|+|+ .++...+.++|+++|+++||.|++|+.+.++++||+|++|||+|++|++..
T Consensus 459 ---V~~a~Vv~~~~~-~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~R~~L~~~~ 533 (536)
T 3ni2_A 459 ---ISDAAVVGLKDE-DAGEVPVAFVVKSEKSQATEDEIKQYISKQVIFYKRIKRVFFIEAIPKAPSGKILRKNLKEKL 533 (536)
T ss_dssp ---EEEEEEEEEEET-TTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGCCSEEEECSCCCBCTTSCBCHHHHHTC-
T ss_pred ---cceEEEEeeecC-CCCceeEEEEEecCCCCCCHHHHHHHHHHhccCCccccEEEEEecCCCCCCCCeeHHHHHHHh
Confidence 999999999987 47888899998 777888999999999999999999999999999999999999999999764
No 6
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=99.80 E-value=4.8e-20 Score=165.54 Aligned_cols=134 Identities=13% Similarity=0.090 Sum_probs=94.4
Q ss_pred eCcccccCccCCCCCCCCCCCcchh-------hhhhHhHhhhh-----eEEeceeeeeccCcchHHHHHHHHHhCCCccc
Q psy8157 9 LGFPKVTKPKHDSSTLNDKPPKKAS-------INLLKALQRYL-----RFLWAARRVAQKDLTIADIFREHAVRSPNKVI 76 (191)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~rdl~~l~~~l-----~i~~~g~nv~~~e~~Ve~~~e~~l~~hP~k~~ 76 (191)
+.=|.|+.||+++.+.+.. +..+| +.|-.|...++ +++.+|+||++.+ || ++|.+||+
T Consensus 353 v~g~~~~~gY~~~~~~t~~-~~~g~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~e--iE----~~l~~~p~--- 422 (501)
T 3ipl_A 353 IKGANVMNGYLYPTDLTGT-FENGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQ--IE----TVAKQFPG--- 422 (501)
T ss_dssp EESTTSCSCCSBSTTCCCS-EETTEEEEEEEEEECTTSCEEEEEECCCCEECSSCEECHHH--HH----HHHTTSTT---
T ss_pred EeccchhhhhCcChhhcch-hcCCceecCCEEEEcCCCeEEEEccccceEEECCEEECHHH--HH----HHHHhCCC---
Confidence 3458999999999888877 77787 23333333333 6688999999999 86 56789999
Q ss_pred ceeeeEEEEEEecCCCCCceEEEEEEcCCCCCCHHHHHHHHHhcCCCCCcccEEEEeccCCCCCCCCcchHHHhhccCCC
Q psy8157 77 FMFENTEWTAQQVPGYEGRAGMAAILDINKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGFDP 156 (191)
Q Consensus 77 ~~V~eaaVvGVpd~~~~ge~~~A~Vv~~g~~~~~e~l~~~l~~~Lp~ykvP~~v~~v~eLP~T~tGKi~K~~Lr~~~~~~ 156 (191)
|.+|+|+|++++ ..|+.++|+|+. +...+.++|+++|+++||.|++|+.+.++++||+|++|||+|++||++....
T Consensus 423 --V~~~~vv~~~~~-~~g~~~~a~v~~-~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 423 --ISDAVCVGHPDD-TWGQVPKLYFVS-ESDISKAQLIAYLSKHLAKYKVPKHFEKVDTLPYTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp --EEEEEEEEEEET-TTEEEEEEEEEE-SSCCCHHHHHHHHHHHSCGGGSCSEEEECSSCC-------------------
T ss_pred --ccEEEEEEEecc-cCCceEEEEEEe-CCCCCHHHHHHHHHhhCccccCCCEEEEecccCCCCCCCEeHHHHhhccccc
Confidence 999999999987 468888888873 3456889999999999999999999999999999999999999999887654
No 7
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=99.79 E-value=4.2e-20 Score=168.29 Aligned_cols=132 Identities=12% Similarity=0.134 Sum_probs=108.0
Q ss_pred eCcccccCccCCCCCCCCCCCc-chh-------hhhhHhHhhhh-----eEEeceeeeeccCcchHHHHHHHHHhCCCcc
Q psy8157 9 LGFPKVTKPKHDSSTLNDKPPK-KAS-------INLLKALQRYL-----RFLWAARRVAQKDLTIADIFREHAVRSPNKV 75 (191)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~-~~~-------~rdl~~l~~~l-----~i~~~g~nv~~~e~~Ve~~~e~~l~~hP~k~ 75 (191)
++=|.||.||+++.+.|...|. .+| +.|-.|...++ +|+.+|+||++.| || ++|.+||+
T Consensus 383 v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~e--IE----~~l~~~p~-- 454 (539)
T 1mdb_A 383 TRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEE--VE----NHLLAHPA-- 454 (539)
T ss_dssp EECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEEGGGCEECSSCEECHHH--HH----HHHTTSTT--
T ss_pred eeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEEeccccceEEECCEEECHHH--HH----HHHHhCCC--
Confidence 4458999999998877766663 556 22333322222 6688999999999 85 56689999
Q ss_pred cceeeeEEEEEEecCCCCCceEEEEEEcCCCCCCHHHHHHHHHhc-CCCCCcccEEEEeccCCCCCCCCcchHHHhhc
Q psy8157 76 IFMFENTEWTAQQVPGYEGRAGMAAILDINKSLDVTAVSEGIKKA-LPSYARPLFIRCLREVEMTGTYKLKKLDLQKE 152 (191)
Q Consensus 76 ~~~V~eaaVvGVpd~~~~ge~~~A~Vv~~g~~~~~e~l~~~l~~~-Lp~ykvP~~v~~v~eLP~T~tGKi~K~~Lr~~ 152 (191)
|.+|+|+|++++ ..|+.++|+|+..+...+.++|.++|+++ ||.|++|+.|.++++||+|++|||+|++|++.
T Consensus 455 ---V~~a~vv~~~~~-~~g~~~~a~vv~~~~~~~~~~l~~~l~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 528 (539)
T 1mdb_A 455 ---VHDAAMVSMPDQ-FLGERSCVFIIPRDEAPKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREA 528 (539)
T ss_dssp ---EEEEEEEEEEET-TTEEEEEEEEEESSSCCCHHHHHHHHHHTTCCGGGSCSEEEECSSCCBCTTSCBCHHHHHHH
T ss_pred ---cceEEEEecccc-ccCceEEEEEEECCCCCCHHHHHHHHHhCCCCcccCCCEEEEeccCCCCCCcCEeHHHHHHH
Confidence 999999999987 46888889888335567899999999998 99999999999999999999999999999975
No 8
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=99.79 E-value=4.3e-20 Score=167.22 Aligned_cols=132 Identities=14% Similarity=0.149 Sum_probs=95.3
Q ss_pred eCcccccCccCCCCCCCCCCCc-chh-------hhhhHhHhhhh------eEEeceeeeeccCcchHHHHHHHHHhCCCc
Q psy8157 9 LGFPKVTKPKHDSSTLNDKPPK-KAS-------INLLKALQRYL------RFLWAARRVAQKDLTIADIFREHAVRSPNK 74 (191)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~-~~~-------~rdl~~l~~~l------~i~~~g~nv~~~e~~Ve~~~e~~l~~hP~k 74 (191)
++=|.|+.||+.+.+.+...|. .+| +.|-.|...++ .++.+|+||++.| || ++|.+||+
T Consensus 358 v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR~~d~~ik~~G~~v~~~e--IE----~~l~~~p~- 430 (505)
T 3nyq_A 358 VRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGE--IE----NALLEHPE- 430 (505)
T ss_dssp EESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEESSCCCEEETTEEECHHH--HH----HHHTTSTT-
T ss_pred EecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCCccCceEEeCCEEECHHH--HH----HHHHHCcC-
Confidence 4458999999998877777774 555 23322322222 5788999999999 85 56789999
Q ss_pred ccceeeeEEEEEEecCCCCCceEEEEEE-cC-CCCCCHHHHHHHHHhcCCCCCcccEEEEeccCCCCCCCCcchHHHhhc
Q psy8157 75 VIFMFENTEWTAQQVPGYEGRAGMAAIL-DI-NKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKE 152 (191)
Q Consensus 75 ~~~~V~eaaVvGVpd~~~~ge~~~A~Vv-~~-g~~~~~e~l~~~l~~~Lp~ykvP~~v~~v~eLP~T~tGKi~K~~Lr~~ 152 (191)
|.+|+|+|++++ ..|+.++|+|+ .+ +...+.++|+++|+++||.|++|+.+.++++||+|++|||+|++|+++
T Consensus 431 ----V~~a~Vv~~~~~-~~g~~l~a~vv~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 505 (505)
T 3nyq_A 431 ----VREAAVTGEPDP-DLGERIVAWIVPADPAAPPALGTLADHVAARLAPHKRPRVVRYLDAVPRNDMGKIMKRALNRD 505 (505)
T ss_dssp ----EEEEEEEEEEET-TTEEEEEEEEEESSTTSCCCHHHHHHHHHHHTCGGGSCSEEEECSCCCC--------------
T ss_pred ----ccEEEEEeeECC-CCCcEEEEEEEECCCCCCCCHHHHHHHHHhhCCCCcCccEEEEECCCCCCCCcCeeHHhhccC
Confidence 999999999998 46888899988 43 567788999999999999999999999999999999999999999864
No 9
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=99.78 E-value=3.7e-20 Score=170.85 Aligned_cols=131 Identities=11% Similarity=0.124 Sum_probs=92.8
Q ss_pred ccccCccCCCCCCCCCCCcchh-------hhhhHhHhhhh-----eEEeceeeeeccCcchHHHHHHHHHhCCCccccee
Q psy8157 12 PKVTKPKHDSSTLNDKPPKKAS-------INLLKALQRYL-----RFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMF 79 (191)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~-------~rdl~~l~~~l-----~i~~~g~nv~~~e~~Ve~~~e~~l~~hP~k~~~~V 79 (191)
|.+|.||+++.+.+...|.++| ..|-.|...|+ .|+.+|+||++.| || ++|.+||+ |
T Consensus 432 ~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~e--IE----~~l~~~p~-----V 500 (580)
T 3etc_A 432 VGLFVHYGKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFE--VE----SALIQHPA-----V 500 (580)
T ss_dssp TTCCCEETTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEESSSCEEETTEEECHHH--HH----HHHTTSTT-----E
T ss_pred CeeeccccCCHhHHHhhcCCCEEecCcEEEECCCCcEEEEecCCCEEEECCEEECHHH--HH----HHHHhCCC-----e
Confidence 7899999999888888888888 33333333333 6789999999999 86 56789999 9
Q ss_pred eeEEEEEEecCCCCCceEEEEEE-cCCCCCC---HHHHHHHHHhcCCCCCcccEEEEeccCCCCCCCCcchHHHhhccC
Q psy8157 80 ENTEWTAQQVPGYEGRAGMAAIL-DINKSLD---VTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGF 154 (191)
Q Consensus 80 ~eaaVvGVpd~~~~ge~~~A~Vv-~~g~~~~---~e~l~~~l~~~Lp~ykvP~~v~~v~eLP~T~tGKi~K~~Lr~~~~ 154 (191)
.||+|+|++++ ..|+.++|+|+ .++...+ .++|.++|+++||+|++|+.|.++++||+|++|||+|++||+...
T Consensus 501 ~~a~Vvg~~~~-~~g~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~sGKi~R~~Lr~~~~ 578 (580)
T 3etc_A 501 LECAITGVPDP-VRGQVIKATIVLTKDYTPSDSLKNELQDHVKNVTAPYKYPRIIEFVPELPKTISGKIRRVEIRDKDQ 578 (580)
T ss_dssp EEEEEEEEEET-TTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHSCGGGCCSEEEEECC-------------------
T ss_pred eeEEEEeeecc-CCCcEEEEEEEECCCCCCCHHHHHHHHHHHHhhCCCccCCeEEEEeCCCCCCCCcCCcHHHHHhHhh
Confidence 99999999998 57888899988 6665444 468999999999999999999999999999999999999997643
No 10
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=99.77 E-value=7.8e-20 Score=167.02 Aligned_cols=133 Identities=11% Similarity=0.061 Sum_probs=108.7
Q ss_pred eCcccccCccCCCCCCCCCCC-cchh-------hhhhHhHhhhh-----eEEeceeeeeccCcchHHHHHHHHHhCCCcc
Q psy8157 9 LGFPKVTKPKHDSSTLNDKPP-KKAS-------INLLKALQRYL-----RFLWAARRVAQKDLTIADIFREHAVRSPNKV 75 (191)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~-~~~~-------~rdl~~l~~~l-----~i~~~g~nv~~~e~~Ve~~~e~~l~~hP~k~ 75 (191)
+.=|.||.||+++.+.+...| ..+| +.|-.|...++ +|+.+|+||++.+ || ++|.+||+
T Consensus 394 v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~~G~~v~p~e--IE----~~l~~~p~-- 465 (548)
T 2d1s_A 394 VKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAE--LE----SVLLQHPS-- 465 (548)
T ss_dssp EESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEEEEGGGCBCBTTCCBCHHH--HH----HHHHTSTT--
T ss_pred ECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcCCCeEEEeccccceEEECCEEECHHH--HH----HHHHhCCC--
Confidence 345899999998877666656 3556 22322322222 5678899999999 85 56689999
Q ss_pred cceeeeEEEEEEecCCCCCceEEEEEE-cCCCCCCHHHHHHHHHhcCCCCCccc-EEEEeccCCCCCCCCcchHHHhhcc
Q psy8157 76 IFMFENTEWTAQQVPGYEGRAGMAAIL-DINKSLDVTAVSEGIKKALPSYARPL-FIRCLREVEMTGTYKLKKLDLQKEG 153 (191)
Q Consensus 76 ~~~V~eaaVvGVpd~~~~ge~~~A~Vv-~~g~~~~~e~l~~~l~~~Lp~ykvP~-~v~~v~eLP~T~tGKi~K~~Lr~~~ 153 (191)
|.+|+|+|++++ ..|+.++|+|+ .++...+.++|+++|+++||.|++|+ .|.++++||+|++||++|+.|++..
T Consensus 466 ---V~~a~V~~~~~~-~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~p~~~i~~v~~lP~t~~GKi~r~~L~~~~ 541 (548)
T 2d1s_A 466 ---IFDAGVAGVPDP-VAGELPGAVVVLESGKNMTEKEVMDYVASQVSNAKRLRGGVRFVDEVPKGLTGKIDGRAIREIL 541 (548)
T ss_dssp ---EEEEEEEEEEET-TTEEEEEEEEEECTTCCCCHHHHHHHHHTTSCGGGSCTTCEEECSSCCBCTTSCBCHHHHHHHH
T ss_pred ---ccEEEEEEEEcC-CCCeeeEEEEEEcCCCCCCHHHHHHHHHHhccccccccccEEEccCCCCCCcchhHHHHHHHHH
Confidence 999999999987 46888889988 77777889999999999999999999 9999999999999999999999754
No 11
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=99.76 E-value=7.4e-20 Score=165.06 Aligned_cols=137 Identities=15% Similarity=0.098 Sum_probs=98.4
Q ss_pred CcccccCccCCCCCCCCCCC----cchh-------hhhhHhHhhhh-----eEEeceeeeeccCcchHHHHHHHHHhCCC
Q psy8157 10 GFPKVTKPKHDSSTLNDKPP----KKAS-------INLLKALQRYL-----RFLWAARRVAQKDLTIADIFREHAVRSPN 73 (191)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~----~~~~-------~rdl~~l~~~l-----~i~~~g~nv~~~e~~Ve~~~e~~l~~hP~ 73 (191)
.=|.||+||+++.+.+...| ..+| ..|-.|...++ +|+.+|+||++.+ || ++|.+||+
T Consensus 354 ~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~e--IE----~~l~~~p~ 427 (521)
T 3l8c_A 354 TGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELED--VS----QQLNQSPM 427 (521)
T ss_dssp ESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECSSSCEEEEEEGGGBCC-----CBHHH--HH----HHHHTSTT
T ss_pred cccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHH--HH----HHHHcCCC
Confidence 34999999998877665554 2234 22222322222 5677899999999 86 56689999
Q ss_pred cccceeeeEEEEEEecCCCCCceEEEEEE-cCCCCCC-------HHHHHHHHHhcCCCCCcccEEEEeccCCCCCCCCcc
Q psy8157 74 KVIFMFENTEWTAQQVPGYEGRAGMAAIL-DINKSLD-------VTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLK 145 (191)
Q Consensus 74 k~~~~V~eaaVvGVpd~~~~ge~~~A~Vv-~~g~~~~-------~e~l~~~l~~~Lp~ykvP~~v~~v~eLP~T~tGKi~ 145 (191)
|.+|+|+|++++..+++.++|+|+ .++...+ .++|+++|+++||.|++|+.+.++++||+|++|||+
T Consensus 428 -----V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKid 502 (521)
T 3l8c_A 428 -----VASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDRELELTKAIKASVKDHMMSYMMPSKFLYRDSLPLTPNGKID 502 (521)
T ss_dssp -----EEEEEEECCCSSSCC---CEEEEEECTTSGGGCSSHHHHHHHHHHHSGGGSCGGGSCSEEEECSSCCBCTTSSBC
T ss_pred -----cceEEEEEeecCCCCceEEEEEEEecCccccccccchhhHHHHHHHHHhhCccccCCeEEEEecccCCCCCcCcc
Confidence 999999999976556788888888 6654321 578999999999999999999999999999999999
Q ss_pred hHHHhhccCCCC
Q psy8157 146 KLDLQKEGFDPN 157 (191)
Q Consensus 146 K~~Lr~~~~~~~ 157 (191)
|++|+++..+..
T Consensus 503 r~~L~~~~~~~~ 514 (521)
T 3l8c_A 503 IKTLINEVNNRE 514 (521)
T ss_dssp HHHHHHHTC---
T ss_pred HHHHhhhhhcCC
Confidence 999998876654
No 12
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=99.76 E-value=1.9e-19 Score=165.36 Aligned_cols=133 Identities=14% Similarity=0.152 Sum_probs=106.0
Q ss_pred CcccccCccCCCCCCCCCCCcc-------hh-------hhhhHhHhhhh-----eEEeceeeeeccCcchHHHHHHHHHh
Q psy8157 10 GFPKVTKPKHDSSTLNDKPPKK-------AS-------INLLKALQRYL-----RFLWAARRVAQKDLTIADIFREHAVR 70 (191)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~-------~~-------~rdl~~l~~~l-----~i~~~g~nv~~~e~~Ve~~~e~~l~~ 70 (191)
.=|.||+||+++.+.+...|.+ +| ..|-.|...++ +|+.+|+||++.+ || ++|.+
T Consensus 378 ~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~e--IE----~~l~~ 451 (563)
T 1amu_A 378 GGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKIRGHRVELEE--VE----SILLK 451 (563)
T ss_dssp EETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHH--HH----HHHTT
T ss_pred echhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcCCCeEEEeccccCEEEECCEEeCHHH--HH----HHHHh
Confidence 3488999999887766555533 25 22323322222 6788999999999 85 56789
Q ss_pred CCCcccceeeeEEEEEEecCCCCCceEEEEEEcCCCCCCHHHHHHHHHhcCCCCCcccEEEEeccCCCCCCCCcchHHHh
Q psy8157 71 SPNKVIFMFENTEWTAQQVPGYEGRAGMAAILDINKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQ 150 (191)
Q Consensus 71 hP~k~~~~V~eaaVvGVpd~~~~ge~~~A~Vv~~g~~~~~e~l~~~l~~~Lp~ykvP~~v~~v~eLP~T~tGKi~K~~Lr 150 (191)
||+ |.+|+|+|++++ .+|+.++|+|+.. ...+.++|+++|+++||.|++|+.+.++++||+|++|||+|++|+
T Consensus 452 ~p~-----V~~a~Vv~~~~~-~~~~~~~a~vv~~-~~~~~~~l~~~l~~~L~~y~~P~~i~~v~~lP~t~~GKi~r~~L~ 524 (563)
T 1amu_A 452 HMY-----ISETAVSVHKDH-QEQPYLCAYFVSE-KHIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQLP 524 (563)
T ss_dssp STT-----EEEEEEEEEECT-TSCEEEEEEEEES-SCCCHHHHHHHHHHHSCGGGSCSEEEECSSCCBCTTSSBCGGGSC
T ss_pred CCC-----cceEEEEEeecC-CCCeEEEEEEEeC-CCCCHHHHHHHHHhhCchhhCCcEEEEecccCCCCCcChhHHhcC
Confidence 999 999999999987 4678888888822 346789999999999999999999999999999999999999999
Q ss_pred hccCC
Q psy8157 151 KEGFD 155 (191)
Q Consensus 151 ~~~~~ 155 (191)
+....
T Consensus 525 ~~~~~ 529 (563)
T 1amu_A 525 EPDLT 529 (563)
T ss_dssp CCCCC
T ss_pred Ccccc
Confidence 76543
No 13
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=99.75 E-value=1.2e-20 Score=170.01 Aligned_cols=137 Identities=11% Similarity=0.078 Sum_probs=24.2
Q ss_pred eCcccccCccCCCCCCCCCCCcchh-------hhhhHhHhhhh-------eEEeceeeeeccCcchHHHHHHHHHhCCCc
Q psy8157 9 LGFPKVTKPKHDSSTLNDKPPKKAS-------INLLKALQRYL-------RFLWAARRVAQKDLTIADIFREHAVRSPNK 74 (191)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~rdl~~l~~~l-------~i~~~g~nv~~~e~~Ve~~~e~~l~~hP~k 74 (191)
+.=|.|+.||+++.+.+...|..+| +.|-.|...++ .++.+|+||++.+ || ++|.+||+
T Consensus 352 v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d~~d~ik~~G~~v~p~e--iE----~~l~~~p~- 424 (509)
T 3ivr_A 352 LRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAE--VE----GALKQHPA- 424 (509)
T ss_dssp EESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC----------------------------------
T ss_pred EecCCccccccCCHHHhHHHhhcCCcccccEEEECCCceEEEeCCCCcceeEEECCEEECHHH--HH----HHHHhCCC-
Confidence 3458999999999888888888888 23333322222 2677899999999 86 56689999
Q ss_pred ccceeeeEEEEEEecCCCCCceEEEEEE-cCCCCCCHHHHHHHHHhcCCCCCcccEEEEeccCCCCCCCCcchHHHhhcc
Q psy8157 75 VIFMFENTEWTAQQVPGYEGRAGMAAIL-DINKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEG 153 (191)
Q Consensus 75 ~~~~V~eaaVvGVpd~~~~ge~~~A~Vv-~~g~~~~~e~l~~~l~~~Lp~ykvP~~v~~v~eLP~T~tGKi~K~~Lr~~~ 153 (191)
|.+|+|+|++++ ..|+.++|+|+ .++...+.++|+++|+++||.|++|+.|.++++||+|++|||+|++||+..
T Consensus 425 ----V~~a~vv~~~~~-~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKidr~~Lr~~~ 499 (509)
T 3ivr_A 425 ----IADAVVIGVPDP-QWSEAIKAVCVCKPGESIAADALAEFVASLIARYKKPKHVVFVEALPKDAKGAIDRAAVKTAH 499 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----ceeEEEEecccc-ccCcEEEEEEEeCCCCCCCHHHHHHHHHhhCcccCCCcEEEEecCCCCCCCCCccHHHHHHHH
Confidence 999999999987 46788888888 777788889999999999999999999999999999999999999999877
Q ss_pred CCCC
Q psy8157 154 FDPN 157 (191)
Q Consensus 154 ~~~~ 157 (191)
....
T Consensus 500 ~~~~ 503 (509)
T 3ivr_A 500 GQEG 503 (509)
T ss_dssp ----
T ss_pred hhcc
Confidence 6544
No 14
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=99.75 E-value=1.8e-19 Score=165.76 Aligned_cols=134 Identities=12% Similarity=0.101 Sum_probs=108.3
Q ss_pred cccccCccCCCCCCCCCCCcchh-------hhhhHhHhhhh-----eEEeceeeeeccCcchHHHHHHHHHhCCCcccce
Q psy8157 11 FPKVTKPKHDSSTLNDKPPKKAS-------INLLKALQRYL-----RFLWAARRVAQKDLTIADIFREHAVRSPNKVIFM 78 (191)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~-------~rdl~~l~~~l-----~i~~~g~nv~~~e~~Ve~~~e~~l~~hP~k~~~~ 78 (191)
=|.||.||+++.+.+...|..+| ..|-.|...++ +|+.+|+||++.+ || ++|.+||+
T Consensus 412 g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~V~p~e--IE----~~l~~~p~----- 480 (570)
T 3c5e_A 412 PIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSE--VE----NALMEHPA----- 480 (570)
T ss_dssp CTTCCCEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEEEGGGCEEETTEEECHHH--HH----HHHHTSTT-----
T ss_pred CchhhccccCChhHhhhhhcCCccccceeEEEcCCceEEEEecCCCEEEECCEEECHHH--HH----HHHHhCCC-----
Confidence 48899999999888777777677 33333333333 5788999999999 86 56689999
Q ss_pred eeeEEEEEEecCCCCCceEEEEEE-cCCC--CC---CHHHHHHHHHhcCCCCCcccEEEEeccCCCCCCCCcchHHHhhc
Q psy8157 79 FENTEWTAQQVPGYEGRAGMAAIL-DINK--SL---DVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKE 152 (191)
Q Consensus 79 V~eaaVvGVpd~~~~ge~~~A~Vv-~~g~--~~---~~e~l~~~l~~~Lp~ykvP~~v~~v~eLP~T~tGKi~K~~Lr~~ 152 (191)
|.+|+|+|++++ ..|+.++|+|+ .++. .. ..++|.++|+++||.|++|+.|.++++||+|++||++|++|++.
T Consensus 481 V~~a~Vv~~~~~-~~g~~~~a~vv~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~R~~L~~~ 559 (570)
T 3c5e_A 481 VVETAVISSPDP-VRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDK 559 (570)
T ss_dssp EEEEEEEEEEET-TTEEEEEEEEEECGGGTTSCHHHHHHHHHHHHHHHSCGGGSCSEEEEESCCCBCTTCCBCHHHHHHH
T ss_pred cceEEEEeeeCC-CCCeEEEEEEEECCcccCcchHHHHHHHHHHHHhhCccccCCcEEEEeccCCCCCCcCCcHHHHHHH
Confidence 999999999987 46788888888 5443 11 25789999999999999999999999999999999999999987
Q ss_pred cCCC
Q psy8157 153 GFDP 156 (191)
Q Consensus 153 ~~~~ 156 (191)
....
T Consensus 560 ~~~~ 563 (570)
T 3c5e_A 560 EWKM 563 (570)
T ss_dssp HTC-
T ss_pred HHhh
Confidence 6553
No 15
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=99.75 E-value=5.6e-20 Score=167.49 Aligned_cols=134 Identities=12% Similarity=0.050 Sum_probs=72.3
Q ss_pred eCcccccCccCCCCCCCCCCCc-chh-------hhhhHhHhhhh-----eEEeceeeeeccCcchHHHHHHHHHhCCCcc
Q psy8157 9 LGFPKVTKPKHDSSTLNDKPPK-KAS-------INLLKALQRYL-----RFLWAARRVAQKDLTIADIFREHAVRSPNKV 75 (191)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~-~~~-------~rdl~~l~~~l-----~i~~~g~nv~~~e~~Ve~~~e~~l~~hP~k~ 75 (191)
+.=|.||.||+++.+.+...|. .+| +.|-.|...++ +|+.+|+||++.| || ++|.+||+
T Consensus 388 v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~e--IE----~~l~~~p~-- 459 (541)
T 1v25_A 388 LKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVD--LE----NALMGHPK-- 459 (541)
T ss_dssp EESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHH--HH----CC--------
T ss_pred EeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHH--HH----HHHHhCCC--
Confidence 3458899999999888888776 666 23323322222 6789999999999 86 56679999
Q ss_pred cceeeeEEEEEEecCCCCCceEEEEEEcCCCCCCHHHHHHHHHh-cCCCCCcccEEEEeccCCCCCCCCcchHHHhhccC
Q psy8157 76 IFMFENTEWTAQQVPGYEGRAGMAAILDINKSLDVTAVSEGIKK-ALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGF 154 (191)
Q Consensus 76 ~~~V~eaaVvGVpd~~~~ge~~~A~Vv~~g~~~~~e~l~~~l~~-~Lp~ykvP~~v~~v~eLP~T~tGKi~K~~Lr~~~~ 154 (191)
|.+|+|+|++++ .+|+.++|+|+..+...+.+++.++|++ +||.|++|+.+.++++||+|++||++|+.|++...
T Consensus 460 ---V~~a~Vv~~~~~-~~~~~~~a~vv~~~~~~~~~~l~~~~~~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 535 (541)
T 1v25_A 460 ---VKEAAVVAIPHP-KWQERPLAVVVPRGEKPTPEELNEHLLKAGFAKWQLPDAYVFAEEIPRTSAGKFLKRALREQYK 535 (541)
T ss_dssp -------CEEEEECS-SSSEEEEECC-------------------CCCTTTSCSBC--------------CCTTHHHHST
T ss_pred ---ceEEEEEEecCC-CcCceEEEEEEECCCCCCHHHHHHHHHhccCccccCCcEEEEeCCCCCCCccCeeHHHHHHHHH
Confidence 999999999987 4678888888833556678899999999 89999999999999999999999999999998653
No 16
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=99.75 E-value=3.3e-19 Score=160.94 Aligned_cols=137 Identities=15% Similarity=0.135 Sum_probs=105.8
Q ss_pred eCcccccCccCCCCCCCCCCCc--ch--hh--hhhHh-Hhhhh--------eEEeceeeeeccCcchHHHHHHHHHhCCC
Q psy8157 9 LGFPKVTKPKHDSSTLNDKPPK--KA--SI--NLLKA-LQRYL--------RFLWAARRVAQKDLTIADIFREHAVRSPN 73 (191)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~--~~--~~--rdl~~-l~~~l--------~i~~~g~nv~~~e~~Ve~~~e~~l~~hP~ 73 (191)
+.=|.||.||+++.+.+...|. .+ |- -|+-. -.|+| +|+.+|+||++.+ || ++|.+||+
T Consensus 349 v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~~dG~l~~~GR~~d~ik~~G~~v~p~e--IE----~~l~~~p~ 422 (511)
T 3e7w_A 349 IAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQDGQIFCQGRLDFQIKLHGYRMELEE--IE----FHVRQSQY 422 (511)
T ss_dssp EESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEEETTEEEEEEESSSEEEETTEEEEHHH--HH----HHHHHSTT
T ss_pred EecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEccCCeEEEEccccCEEEECCEEeCHHH--HH----HHHHhCCC
Confidence 3458999999988776665552 12 21 11000 12344 6788999999999 86 56689999
Q ss_pred cccceeeeEEEEEEecCCCCCceEEEEEE-cCCCCCC----HHHHHHHHHhcCCCCCcccEEEEeccCCCCCCCCcchHH
Q psy8157 74 KVIFMFENTEWTAQQVPGYEGRAGMAAIL-DINKSLD----VTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLD 148 (191)
Q Consensus 74 k~~~~V~eaaVvGVpd~~~~ge~~~A~Vv-~~g~~~~----~e~l~~~l~~~Lp~ykvP~~v~~v~eLP~T~tGKi~K~~ 148 (191)
|.+|+|+|++++ ..++.++|+|+ .++...+ .++|+++|+++||.|++|+.+.++++||+|++|||+|++
T Consensus 423 -----V~~a~vv~~~~~-~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~v~~lP~t~~GKi~R~~ 496 (511)
T 3e7w_A 423 -----VRSAVVIPYQPN-GTVEYLIAAIVPEEHEFEKEFQLTSAIKKELAASLPAYMIPRKFIYQDHIQMTANGKIDRKR 496 (511)
T ss_dssp -----EEEEEEEEECSS-SSCCEEEEEEEECCCCCSSHHHHHHHHHHHHHHHSCGGGSCSEEEECSCCCBCTTSCBCHHH
T ss_pred -----cceEEEEEEcCC-CCceEEEEEEEeccccccchhhHHHHHHHHHHhhCchhhCCeeEEEeccCCCCCCcCccHHH
Confidence 999999999987 46778888888 6555444 368999999999999999999999999999999999999
Q ss_pred HhhccCCCC
Q psy8157 149 LQKEGFDPN 157 (191)
Q Consensus 149 Lr~~~~~~~ 157 (191)
||+....++
T Consensus 497 L~~~~~~~~ 505 (511)
T 3e7w_A 497 IGEEVLVRS 505 (511)
T ss_dssp HHHHHHHHH
T ss_pred HHhHHhhhc
Confidence 998765544
No 17
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=99.74 E-value=8.1e-19 Score=163.92 Aligned_cols=132 Identities=13% Similarity=0.086 Sum_probs=104.1
Q ss_pred ccccCccCCCCCCCCCCC---cchh-------hhhhHhHhhhh-----eEEeceeeeeccCcchHHHHHHHHHhCCCccc
Q psy8157 12 PKVTKPKHDSSTLNDKPP---KKAS-------INLLKALQRYL-----RFLWAARRVAQKDLTIADIFREHAVRSPNKVI 76 (191)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~---~~~~-------~rdl~~l~~~l-----~i~~~g~nv~~~e~~Ve~~~e~~l~~hP~k~~ 76 (191)
|.++.||+.+.+.+...+ ..+| +.|-.|...++ .|+.+|+||++.| || ++|.+||+
T Consensus 471 p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~e--IE----~~l~~~p~--- 541 (652)
T 1pg4_A 471 PGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAE--IE----SALVAHPK--- 541 (652)
T ss_dssp TTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHH--HH----HHHHHSTT---
T ss_pred CchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHH--HH----HHHHhCCC---
Confidence 899999988754332221 1334 33333332232 6789999999999 86 56679999
Q ss_pred ceeeeEEEEEEecCCCCCceEEEEEE-cCCCCCC---HHHHHHHHHhcCCCCCcccEEEEeccCCCCCCCCcchHHHhhc
Q psy8157 77 FMFENTEWTAQQVPGYEGRAGMAAIL-DINKSLD---VTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKE 152 (191)
Q Consensus 77 ~~V~eaaVvGVpd~~~~ge~~~A~Vv-~~g~~~~---~e~l~~~l~~~Lp~ykvP~~v~~v~eLP~T~tGKi~K~~Lr~~ 152 (191)
|.||+|+|++++ ..|+.++|+|+ .++...+ .++|+++|+++||+|++|+.|.++++||+|++|||+|+.|++.
T Consensus 542 --V~ea~Vvg~~~~-~~g~~l~a~Vv~~~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~T~sGKi~R~~L~~~ 618 (652)
T 1pg4_A 542 --IAEAAVVGIPHA-IKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKI 618 (652)
T ss_dssp --EEEEEEEEEEET-TTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHHTCGGGCCSEEEECSCCCBCTTSCBCHHHHHHH
T ss_pred --cceEEEEEEEcC-CCCeEEEEEEEECCCCCCCHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCCccchHHHHHHH
Confidence 999999999987 46888899998 7666555 5789999999999999999999999999999999999999976
Q ss_pred cCC
Q psy8157 153 GFD 155 (191)
Q Consensus 153 ~~~ 155 (191)
...
T Consensus 619 ~~~ 621 (652)
T 1pg4_A 619 AAG 621 (652)
T ss_dssp HHT
T ss_pred HhC
Confidence 543
No 18
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=99.73 E-value=7.8e-19 Score=158.30 Aligned_cols=137 Identities=15% Similarity=0.105 Sum_probs=105.7
Q ss_pred eCcccccCccCCCCCCCCCCCc----chhhh--hhHh-Hhhhh--------eEEeceeeeeccCcchHHHHHHHHHhCCC
Q psy8157 9 LGFPKVTKPKHDSSTLNDKPPK----KASIN--LLKA-LQRYL--------RFLWAARRVAQKDLTIADIFREHAVRSPN 73 (191)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~----~~~~r--dl~~-l~~~l--------~i~~~g~nv~~~e~~Ve~~~e~~l~~hP~ 73 (191)
+.=|.||.||+++.+.+...|. .+|-| |+-. -.|+| +|+.+|+||++.+ || ++|.+||+
T Consensus 350 v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~~dG~l~i~GR~~d~ik~~G~~v~p~e--IE----~~l~~~p~ 423 (512)
T 3fce_A 350 IVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVENGLLFYNGRLDFQIKLHGYRMELEE--IE----HHLRACSY 423 (512)
T ss_dssp EESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEEETTEEEEEEEGGGCEEETTEEECHHH--HH----HHHHHSTT
T ss_pred EeccccChhhcCCchhhhhccccCCCCEEEeCCceEEecCCEEEEecccCCEEEECCEEECHHH--HH----HHHHhCCC
Confidence 3458999999988777766653 33411 2100 12444 5688999999999 86 56689999
Q ss_pred cccceeeeEEEEEEecCCCCCceEEEEEE-cCCCCCC----HHHHHHHHHhcCCCCCcccEEEEeccCCCCCCCCcchHH
Q psy8157 74 KVIFMFENTEWTAQQVPGYEGRAGMAAIL-DINKSLD----VTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLD 148 (191)
Q Consensus 74 k~~~~V~eaaVvGVpd~~~~ge~~~A~Vv-~~g~~~~----~e~l~~~l~~~Lp~ykvP~~v~~v~eLP~T~tGKi~K~~ 148 (191)
|.+|+|+|++++ ..++.++|+|+ .++...+ .++|+++|+++||.|++|+.+.++++||+|++|||+|++
T Consensus 424 -----V~~a~vv~~~~~-~~~~~~~a~vv~~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~~~~~~~lP~t~~GKi~R~~ 497 (512)
T 3fce_A 424 -----VEGAVIVPIKKG-EKYDYLLAVVVPGEHSFEKEFKLTSAIKKELNERLPNYMIPRKFMYQSSIPMTPNGKVDRKK 497 (512)
T ss_dssp -----EEEEEEEEEEET-TEEEEEEEEEEECSCCCSSHHHHHHHHHHHHHTTSCGGGSCSEEEECSCCCBCTTSSBCHHH
T ss_pred -----cceEEEEEEecC-CCceEEEEEEecCCccccchhhhHHHHHHHHHhhCchhcCCeEEEEecccCCCCCcChHHHH
Confidence 999999999987 46777888888 5544333 357999999999999999999999999999999999999
Q ss_pred HhhccCCCC
Q psy8157 149 LQKEGFDPN 157 (191)
Q Consensus 149 Lr~~~~~~~ 157 (191)
|+++....+
T Consensus 498 L~~~~~~~~ 506 (512)
T 3fce_A 498 LLSEVTALE 506 (512)
T ss_dssp HHHHHHC--
T ss_pred HHhhhhhcc
Confidence 998766654
No 19
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=99.73 E-value=3.4e-20 Score=169.96 Aligned_cols=132 Identities=16% Similarity=0.174 Sum_probs=20.4
Q ss_pred CcccccCccCCCCCCCCCCCcc---------hh-------hhhhHhHhhhh-----eEEeceeeeeccCcchHHHHHHHH
Q psy8157 10 GFPKVTKPKHDSSTLNDKPPKK---------AS-------INLLKALQRYL-----RFLWAARRVAQKDLTIADIFREHA 68 (191)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~---------~~-------~rdl~~l~~~l-----~i~~~g~nv~~~e~~Ve~~~e~~l 68 (191)
.=|.||+||+++.+.+...|.. +| ..|-.|...++ +|+.+|+||++.| || ++|
T Consensus 415 ~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~e--IE----~~l 488 (570)
T 4gr5_A 415 AGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGE--VE----ARL 488 (570)
T ss_dssp EETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEEEECTTSCEEEEEC---------------------------
T ss_pred eecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHH--HH----HHH
Confidence 4489999999887766655532 35 33333333333 6688999999999 86 566
Q ss_pred HhCCCcccceeeeEEEEEEecCCCCCceEEEEEE-c-CCCCCCHHHHHHHHHhcCCCCCcccEEEEeccCCCCCCCCcch
Q psy8157 69 VRSPNKVIFMFENTEWTAQQVPGYEGRAGMAAIL-D-INKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKK 146 (191)
Q Consensus 69 ~~hP~k~~~~V~eaaVvGVpd~~~~ge~~~A~Vv-~-~g~~~~~e~l~~~l~~~Lp~ykvP~~v~~v~eLP~T~tGKi~K 146 (191)
.+||+ |.+|+|+|++++ .+++.++|+|+ . ++...+.++|+++|+++||.|++|+.+.++++||+|++|||+|
T Consensus 489 ~~~p~-----V~~a~Vv~~~~~-~~~~~~~a~vv~~~~~~~~~~~~l~~~l~~~l~~~~~P~~i~~v~~lP~t~~GKi~R 562 (570)
T 4gr5_A 489 VGHPA-----VRQAAVLAQDSR-LGDKQLVAYVVAERADAPPDAAELRRHVAEALPAYMVPVECVPVDELPRTPNGKLDR 562 (570)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcCCC-----cceEEEEEeeCC-CCCeEEEEEEEecCCCCCcCHHHHHHHHHhhCccccCCcEEEEcccCCCCCCcCcch
Confidence 89999 999999999987 46777888887 3 3456788999999999999999999999999999999999999
Q ss_pred HHHhhcc
Q psy8157 147 LDLQKEG 153 (191)
Q Consensus 147 ~~Lr~~~ 153 (191)
++|++.+
T Consensus 563 ~~L~~~g 569 (570)
T 4gr5_A 563 RALTGSG 569 (570)
T ss_dssp -------
T ss_pred HhhhccC
Confidence 9999764
No 20
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=99.73 E-value=6.3e-20 Score=167.28 Aligned_cols=135 Identities=15% Similarity=0.106 Sum_probs=22.4
Q ss_pred eCcccccCccCCCCCCCCCCC-cchh-------hhhhHhHhhhh-----eEEeceeeeeccCcchHHHHHHHHHhCCCcc
Q psy8157 9 LGFPKVTKPKHDSSTLNDKPP-KKAS-------INLLKALQRYL-----RFLWAARRVAQKDLTIADIFREHAVRSPNKV 75 (191)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~-~~~~-------~rdl~~l~~~l-----~i~~~g~nv~~~e~~Ve~~~e~~l~~hP~k~ 75 (191)
+.=|.||.||+++.+.+...| ..+| +.|-.|...++ +|+.+|+||++.| || ++|.+||+
T Consensus 392 v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~~GR~dd~ik~~G~~v~p~e--IE----~~l~~~p~-- 463 (544)
T 3o83_A 392 TRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEE--IE----KLILLHPE-- 463 (544)
T ss_dssp EECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEEEEEEC--------------------------------
T ss_pred EecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEEEeecCCEEEeCCEEECHHH--HH----HHHHhCCC--
Confidence 345899999999887777666 3556 23333333333 5688999999999 86 56689999
Q ss_pred cceeeeEEEEEEecCCCCCceEEEEEEcCCCCCCHHHHHHHHHh-cCCCCCcccEEEEeccCCCCCCCCcchHHHhhccC
Q psy8157 76 IFMFENTEWTAQQVPGYEGRAGMAAILDINKSLDVTAVSEGIKK-ALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGF 154 (191)
Q Consensus 76 ~~~V~eaaVvGVpd~~~~ge~~~A~Vv~~g~~~~~e~l~~~l~~-~Lp~ykvP~~v~~v~eLP~T~tGKi~K~~Lr~~~~ 154 (191)
|.+|+|+|++++ ..|+.++|+|+......+.+++.++|++ +||.|++|+.+.++++||+|++|||+|++|++...
T Consensus 464 ---V~~a~vv~~~~~-~~g~~~~a~vv~~~~~~~~~~l~~~~~~~~l~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~~~ 539 (544)
T 3o83_A 464 ---VMHAALVAIVDE-QFGEKSCAFIVSRNPELKAVVLRRHLMELGIAQYKLPDQIKLIESLPLTAVGKVDKKQLRSILN 539 (544)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---ccEEEEEeccCC-CCCceEEEEEEeCCCCCCHHHHHHHHHhCCCCcccCCcEEEEeccCCCCCCCCCcHHHHHHHHh
Confidence 999999999987 4688888888832355677889999998 79999999999999999999999999999998754
Q ss_pred C
Q psy8157 155 D 155 (191)
Q Consensus 155 ~ 155 (191)
.
T Consensus 540 ~ 540 (544)
T 3o83_A 540 T 540 (544)
T ss_dssp -
T ss_pred h
Confidence 4
No 21
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.72 E-value=3.1e-18 Score=149.54 Aligned_cols=102 Identities=14% Similarity=0.088 Sum_probs=87.2
Q ss_pred eEEeceeeeeccCcchHHHHHHHHHhCCCcccceeeeEEEE-EEecCCCCCceEEEEEEcCCCCCCHHHHHHHHHhcCCC
Q psy8157 45 RFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWT-AQQVPGYEGRAGMAAILDINKSLDVTAVSEGIKKALPS 123 (191)
Q Consensus 45 ~i~~~g~nv~~~e~~Ve~~~e~~l~~hP~k~~~~V~eaaVv-GVpd~~~~ge~~~A~Vv~~g~~~~~e~l~~~l~~~Lp~ 123 (191)
+|+++|+||++.+ ||+++ ..+.+||+ |.+|+|+ +++|+ ..|+.++|+|+..+...+.++|+++|+++||.
T Consensus 252 ~Ik~~G~~v~p~e--IE~~l-~~~~~~p~-----V~~a~vv~~~~d~-~~ge~~~a~v~~~~~~~~~~~l~~~l~~~L~~ 322 (358)
T 4gs5_A 252 VINSGGVKIVLDQ--IDQRI-AAVFHHLN-----IGNAFFCWWEPDA-KLGQKLVLVIENAMPEALTERLTAEIRSRVST 322 (358)
T ss_dssp EEEETTEEEEHHH--HHHHH-HHHHHHHT-----CCCCEEEEEEEET-TTEEEEEEEEESCCCHHHHHHHHHHHHHHSCG
T ss_pred eEEECCEEECHHH--HHHHH-HHhccCCC-----ccEEEEEEecCCc-cCCEEEEEEEECCCCCcCHHHHHHHHHhhCCC
Confidence 6789999999999 98776 45568999 9999887 77776 57888888887444455678999999999999
Q ss_pred CCcccEEEEeccCCCCCCCCcchHHHhhccCC
Q psy8157 124 YARPLFIRCLREVEMTGTYKLKKLDLQKEGFD 155 (191)
Q Consensus 124 ykvP~~v~~v~eLP~T~tGKi~K~~Lr~~~~~ 155 (191)
|++|+.|.++++||+|++|||+|++|+++..+
T Consensus 323 ~~~P~~i~~v~~lP~t~~GKi~R~~L~~~l~e 354 (358)
T 4gs5_A 323 YENPKHIYFAKAFAKTQTDKIDKRATFQKLSD 354 (358)
T ss_dssp GGSCSCEEEESSCCBCTTSCBCHHHHHHHTC-
T ss_pred CCCceEEEEECCcCCCCCCChhHHHHHHHhhh
Confidence 99999999999999999999999999987654
No 22
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=99.72 E-value=1.7e-18 Score=156.59 Aligned_cols=131 Identities=11% Similarity=0.003 Sum_probs=99.2
Q ss_pred eCcccccCccCCCCCCCCCCCcchh-------hhhhHhHhhhh-----eEEeceeeeeccCcchHHHHHHHHHhCCCccc
Q psy8157 9 LGFPKVTKPKHDSSTLNDKPPKKAS-------INLLKALQRYL-----RFLWAARRVAQKDLTIADIFREHAVRSPNKVI 76 (191)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~rdl~~l~~~l-----~i~~~g~nv~~~e~~Ve~~~e~~l~~hP~k~~ 76 (191)
+.=|.|+.||+++.+.+...|..+| ..|-.|...++ +|+.+|+||++.+ || ++|.+||+
T Consensus 383 v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~~~GR~dd~ik~~G~~v~p~e--IE----~~l~~~p~--- 453 (529)
T 2v7b_A 383 IKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSPVE--VE----MVLVQHDA--- 453 (529)
T ss_dssp EECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEEEGGGCBC----CBCHHH--HH----HHHTTSTT---
T ss_pred EecCCcccccCCChHHHHHhhhcCCcccCceEEECCCccEEEeCccCCeEEECCEEECHHH--HH----HHHHhCCC---
Confidence 3448999999998877776676666 22323322222 5677899999999 85 56689999
Q ss_pred ceeeeEEEEEEecCCCCCceEEEEEE-cCCCCC---CHHHHHHHHHhcCCCCCcccEEEEeccCCCCCCCCcchHHHhhc
Q psy8157 77 FMFENTEWTAQQVPGYEGRAGMAAIL-DINKSL---DVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKE 152 (191)
Q Consensus 77 ~~V~eaaVvGVpd~~~~ge~~~A~Vv-~~g~~~---~~e~l~~~l~~~Lp~ykvP~~v~~v~eLP~T~tGKi~K~~Lr~~ 152 (191)
|.+|+|+|+ ++ .+++.++|+|+ .++... ..++|.++|+++||.|++|+.+.++++||+|++||++|++|+++
T Consensus 454 --V~~~~vv~~-~~-~~~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~L~~~~~P~~i~~v~~lP~t~~GKi~r~~L~~~ 529 (529)
T 2v7b_A 454 --VLEAAVVGV-DH-GGLVKTRAFVVLKREFAPSEILAEELKAFVKDRLAPHKYPRDIVFVDDLPKTATGKIQRFKLREQ 529 (529)
T ss_dssp --EEEEEEEEE-EE-TTEEEEEEEEEECTTCCCCHHHHHHHHHHHHTTSCTTTSCSEEEEESCCCBCTTSCBCHHHHHC-
T ss_pred --cceEEEEEe-cC-CCceEEEEEEEecCCCCcchhHHHHHHHHHHhhcchhhCCeEEEEeccCCCCCccchhHHhHhhC
Confidence 999999999 54 35777788888 554432 24689999999999999999999999999999999999999863
No 23
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=99.69 E-value=2.8e-19 Score=162.95 Aligned_cols=135 Identities=10% Similarity=0.037 Sum_probs=22.0
Q ss_pred eCcccccCccCCCCCCCCCCC-cchh-------hhhhHhHhhhh-----eEEeceeeeeccCcchHHHHHHHHHhCCCcc
Q psy8157 9 LGFPKVTKPKHDSSTLNDKPP-KKAS-------INLLKALQRYL-----RFLWAARRVAQKDLTIADIFREHAVRSPNKV 75 (191)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~-~~~~-------~rdl~~l~~~l-----~i~~~g~nv~~~e~~Ve~~~e~~l~~hP~k~ 75 (191)
+.=|.||.||+.+.+.+...| ..+| +.|-.|...++ +|+.+|+||++.+ || ++|.+||+
T Consensus 392 v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~e--IE----~~l~~~p~-- 463 (550)
T 3rix_A 392 VRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAE--LE----SILLQHPN-- 463 (550)
T ss_dssp EESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTCCEEEC------------------------------------
T ss_pred EeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeCCceEEEEecchheeEECCEEECHHH--HH----HHHHhCCC--
Confidence 345899999998877776655 4556 23333333333 5688999999999 86 56689999
Q ss_pred cceeeeEEEEEEecCCCCCceEEEEEE-cCCCCCCHHHHHHHHHhcCCCCCccc-EEEEeccCCCCCCCCcchHHHhhcc
Q psy8157 76 IFMFENTEWTAQQVPGYEGRAGMAAIL-DINKSLDVTAVSEGIKKALPSYARPL-FIRCLREVEMTGTYKLKKLDLQKEG 153 (191)
Q Consensus 76 ~~~V~eaaVvGVpd~~~~ge~~~A~Vv-~~g~~~~~e~l~~~l~~~Lp~ykvP~-~v~~v~eLP~T~tGKi~K~~Lr~~~ 153 (191)
|.+|+|+|++++ ..|+.++|+|+ .++...+.++|.++|+++|++|+.|+ .|.++++||+|++|||+|++|++..
T Consensus 464 ---V~~a~vv~~~~~-~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~l~~~~~~~~~i~~v~~lP~t~~GKi~r~~L~~~~ 539 (550)
T 3rix_A 464 ---IFDAGVAGLPDD-DAGELPAAVVVLEHGKTMTEKEIVDYVASQVTTAKKLRGGVVFVDEVPKGLTGKLDARKIREIL 539 (550)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---cceEEEEEeecC-CCCceEEEEEEecCCCCCCHHHHHHHHHHhcccccccCCceEEEeecCCCCCcceeHHHHHHHH
Confidence 999999999987 47888888888 77777888999999999999997665 6999999999999999999999876
Q ss_pred CC
Q psy8157 154 FD 155 (191)
Q Consensus 154 ~~ 155 (191)
..
T Consensus 540 ~~ 541 (550)
T 3rix_A 540 IK 541 (550)
T ss_dssp --
T ss_pred Hh
Confidence 54
No 24
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=99.69 E-value=4.5e-18 Score=159.48 Aligned_cols=133 Identities=14% Similarity=0.102 Sum_probs=99.6
Q ss_pred cccccCccCCCCCCCCCCC---cchh-------hhhhHhHhhhh-----eEEeceeeeeccCcchHHHHHHHHHhCCCcc
Q psy8157 11 FPKVTKPKHDSSTLNDKPP---KKAS-------INLLKALQRYL-----RFLWAARRVAQKDLTIADIFREHAVRSPNKV 75 (191)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~---~~~~-------~rdl~~l~~~l-----~i~~~g~nv~~~e~~Ve~~~e~~l~~hP~k~ 75 (191)
+|.++.||+.+.+.+...+ ..+| +.|-.|...++ .|+.+|+||++.| || ++|.+||+
T Consensus 479 ~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~e--IE----~~l~~~p~-- 550 (663)
T 1ry2_A 479 WPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAE--IE----AAIIEDPI-- 550 (663)
T ss_dssp CTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHH--HH----HHHHSSTT--
T ss_pred CCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHH--HH----HHHHhCCC--
Confidence 3899999988754332221 1344 33333322222 5688999999999 86 56689999
Q ss_pred cceeeeEEEEEEecCCCCCceEEEEEE-cCCCC---C-C------HHHHHHHHHhcCCCCCcccEEEEeccCCCCCCCCc
Q psy8157 76 IFMFENTEWTAQQVPGYEGRAGMAAIL-DINKS---L-D------VTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKL 144 (191)
Q Consensus 76 ~~~V~eaaVvGVpd~~~~ge~~~A~Vv-~~g~~---~-~------~e~l~~~l~~~Lp~ykvP~~v~~v~eLP~T~tGKi 144 (191)
|.||+|+|++++ ..|+.++|+|+ .++.. . + .++|+++|+++||+|++|+.|.++++||+|++|||
T Consensus 551 ---V~ea~Vvg~~~~-~~g~~~~a~Vv~~~~~~~~~~~~~~~~~l~~~l~~~l~~~L~~~~~P~~i~~v~~lP~T~sGKi 626 (663)
T 1ry2_A 551 ---VAECAVVGFNDD-LTGQAVAAFVVLKNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKI 626 (663)
T ss_dssp ---EEEEEEECCCCC-TTSCCCEEEEEEC------------CCSHHHHHHHHHHHHTCTTTSCSEEEECSCCCBCTTSCB
T ss_pred ---cceEEEEEEecC-CCCeEEEEEEEEcCCCccccccchhHHHHHHHHHHHHHHhCCCCcCCeEEEEcCCCCCCCccCc
Confidence 999999999987 46788899998 65543 2 2 57899999999999999999999999999999999
Q ss_pred chHHHhhccCC
Q psy8157 145 KKLDLQKEGFD 155 (191)
Q Consensus 145 ~K~~Lr~~~~~ 155 (191)
+|+.|++....
T Consensus 627 ~R~~L~~~~~~ 637 (663)
T 1ry2_A 627 MRRILRKILAG 637 (663)
T ss_dssp CHHHHHHSCC-
T ss_pred hHHHHHHHHcC
Confidence 99999986544
No 25
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=99.68 E-value=1.7e-17 Score=153.52 Aligned_cols=131 Identities=13% Similarity=0.130 Sum_probs=107.2
Q ss_pred eeCcccccCccCCCCCCCCCCCc-chh-------hhhhHhHhhhh-----eEEeceeeeeccCcchHHHHHHHHHhCCCc
Q psy8157 8 ELGFPKVTKPKHDSSTLNDKPPK-KAS-------INLLKALQRYL-----RFLWAARRVAQKDLTIADIFREHAVRSPNK 74 (191)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~-~~~-------~rdl~~l~~~l-----~i~~~g~nv~~~e~~Ve~~~e~~l~~hP~k 74 (191)
-++=|.|+.||+++.+.+...|. .+| +.|-.|...|+ +++.+|++|++.| || ++|.+||+
T Consensus 386 ~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~~~GR~dd~iki~G~ri~~~e--IE----~~l~~~p~- 458 (617)
T 3rg2_A 386 MTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEE--IE----NLLLRHPA- 458 (617)
T ss_dssp EEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEECSSEEEETTEEEEHHH--HH----HHHTTSTT-
T ss_pred EecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEEEEeecCCEEEECCEEeCHHH--HH----HHHHhCCC-
Confidence 34568899999998887776663 344 33333444444 6789999999999 85 56789999
Q ss_pred ccceeeeEEEEEEecCCCCCceEEEEEE-cCCCCCCHHHHHHHHHh-cCCCCCcccEEEEeccCCCCCCCCcchHHHhhc
Q psy8157 75 VIFMFENTEWTAQQVPGYEGRAGMAAIL-DINKSLDVTAVSEGIKK-ALPSYARPLFIRCLREVEMTGTYKLKKLDLQKE 152 (191)
Q Consensus 75 ~~~~V~eaaVvGVpd~~~~ge~~~A~Vv-~~g~~~~~e~l~~~l~~-~Lp~ykvP~~v~~v~eLP~T~tGKi~K~~Lr~~ 152 (191)
|.+|+|++++++ ..|+..+|+++ .+ ..+.+++.++|++ +||.|++|..+.++++||+|++||++|++|++.
T Consensus 459 ----V~~a~vv~~~~~-~~~~~~~a~vv~~~--~~~~~~l~~~l~~~~lp~~~vP~~~~~v~~lP~t~~GKidR~~L~~~ 531 (617)
T 3rg2_A 459 ----VIYAALVSMEDE-LMGEKSCAYLVVKE--PLRAVQVRRFLREQGIAEFKLPDRVECVDSLPLTAVGKVDKKQLRQW 531 (617)
T ss_dssp ----EEEEEEEEEEET-TTEEEEEEEEEESS--CCCHHHHHHHHHTTTCCGGGSCSEEEECSCCCBCTTSSBCHHHHHHH
T ss_pred ----eeEEEEEeccCc-ccCeeEEEEEEeCC--CCCHHHHHHHHHhCCCccccCCcEEEEecccCCCCCCCCcHHHHHHH
Confidence 999999999987 46778888888 43 5678999999998 699999999999999999999999999999864
No 26
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=99.67 E-value=1.1e-18 Score=169.37 Aligned_cols=135 Identities=12% Similarity=0.081 Sum_probs=21.1
Q ss_pred eCcccccCccCCCCCCCCCCC-cchh-------hhhhHhHhhhh-----eEEeceeeeeccCcchHHHHHHHHHhCCCcc
Q psy8157 9 LGFPKVTKPKHDSSTLNDKPP-KKAS-------INLLKALQRYL-----RFLWAARRVAQKDLTIADIFREHAVRSPNKV 75 (191)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~-~~~~-------~rdl~~l~~~l-----~i~~~g~nv~~~e~~Ve~~~e~~l~~hP~k~ 75 (191)
++=|.|+.||+++.+.+...| ..+| +.|-.|...|+ +++.+|+||++.| || ++|.+||+
T Consensus 434 i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~e--IE----~~l~~~p~-- 505 (979)
T 3tsy_A 434 IRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAE--LE----ALLIGHPD-- 505 (979)
T ss_dssp EESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEEEEESCC-------------------------------
T ss_pred EECCCccccccCChhhhhhhccCCCcEEcCCEEEEcCCceEEEecCCCCEEEECCEEECHHH--HH----HHHHhCCC--
Confidence 445899999998877666555 3455 22223322232 5688999999999 86 56689999
Q ss_pred cceeeeEEEEEEecCCCCCceEEEEEE-cCCCCCCHHHHHHHHHhcCCCCCcccEEEEeccCCCCCCCCcchHHHhhccC
Q psy8157 76 IFMFENTEWTAQQVPGYEGRAGMAAIL-DINKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGF 154 (191)
Q Consensus 76 ~~~V~eaaVvGVpd~~~~ge~~~A~Vv-~~g~~~~~e~l~~~l~~~Lp~ykvP~~v~~v~eLP~T~tGKi~K~~Lr~~~~ 154 (191)
|.+|+|+|++++ ..|+.++|+|+ .++...+.++|+++|+++||.|++|+.+.++++||+|++|||+|++|++...
T Consensus 506 ---V~~~~Vv~~~~~-~~g~~~~a~vv~~~~~~~~~~~l~~~l~~~l~~~~~p~~i~~v~~lP~t~~GKi~r~~L~~~~~ 581 (979)
T 3tsy_A 506 ---ITDVAVVAMKEE-AAGEVPVAFVVKSKDSELSEDDVKQFVSKQVVFYKRINKVFFTESIPKAPSGKILRKDLRAKLA 581 (979)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---cceEEEEEeccc-CCCcEEEEEEEECCCCCCCHHHHHHHHHHhcccccCCeEEEEeCCcCcCCCCCeeHHHHHHHHH
Confidence 999999999987 46888889988 7777788899999999999999999999999999999999999999998654
Q ss_pred C
Q psy8157 155 D 155 (191)
Q Consensus 155 ~ 155 (191)
.
T Consensus 582 ~ 582 (979)
T 3tsy_A 582 N 582 (979)
T ss_dssp -
T ss_pred h
Confidence 4
No 27
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=99.66 E-value=4.6e-18 Score=154.90 Aligned_cols=134 Identities=11% Similarity=0.076 Sum_probs=21.2
Q ss_pred CcccccCccCCCCCCCCCCCcch--h-------hhhhHhHhhhh-----eEEeceeeeeccCcchHHHHHHHHHhC-CCc
Q psy8157 10 GFPKVTKPKHDSSTLNDKPPKKA--S-------INLLKALQRYL-----RFLWAARRVAQKDLTIADIFREHAVRS-PNK 74 (191)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~--~-------~rdl~~l~~~l-----~i~~~g~nv~~~e~~Ve~~~e~~l~~h-P~k 74 (191)
.=|.||+||+++.+.+...+..+ | +.|-.|...++ +|+++|+||++.| || ++|.+| |.
T Consensus 380 ~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~v~p~e--IE----~~l~~~~~~- 452 (562)
T 3ite_A 380 EGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDADSSILFLGRKDEQVKVRGQRLELGE--VS----EVIRSLSPT- 452 (562)
T ss_dssp ESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTTSCEEEEEEC---------------------------------
T ss_pred eccccchhhCCCccccccccCCCCEEEecCCEEEEcCCCeEEEEccccCEEeECcEEECHHH--HH----HHHHhcCCC-
Confidence 44899999999888766444444 5 33333333333 6688999999999 86 455787 77
Q ss_pred ccceeeeEEEEEEecCCCCCceEEEEEE-cCCCCCC-------------HHHHHHHHHhcCCCCCcccEEEEeccCCCC-
Q psy8157 75 VIFMFENTEWTAQQVPGYEGRAGMAAIL-DINKSLD-------------VTAVSEGIKKALPSYARPLFIRCLREVEMT- 139 (191)
Q Consensus 75 ~~~~V~eaaVvGVpd~~~~ge~~~A~Vv-~~g~~~~-------------~e~l~~~l~~~Lp~ykvP~~v~~v~eLP~T- 139 (191)
+.+++|++++++. .++..+++++ ..+.... .++|+++|+++||.||+|+.|.++++||+|
T Consensus 453 ----~~~~~v~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~y~~P~~i~~v~~lP~t~ 527 (562)
T 3ite_A 453 ----DIDVVTLLLNHPG-TSKQFLVSFVASSGAAVRGELRWINENYKEINNSLRQACEQTLPAYMVPDFIIPISFIPLRD 527 (562)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----ceeEEEEEecCCC-CcceEEEEEEecccccccccccccccchhhHHHHHHHHHHhhCCcccCCcEEEEeccCCCCC
Confidence 9999999999884 4555555555 4333322 358999999999999999999999999988
Q ss_pred CCCCcchHHHhhccCC
Q psy8157 140 GTYKLKKLDLQKEGFD 155 (191)
Q Consensus 140 ~tGKi~K~~Lr~~~~~ 155 (191)
++||++|++|++....
T Consensus 528 ~~GKi~r~~L~~~~~~ 543 (562)
T 3ite_A 528 TSAKTDAKALEHMFHT 543 (562)
T ss_dssp ----------------
T ss_pred CCCcchHHHHHHHHhc
Confidence 9999999999976543
No 28
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=99.59 E-value=1.1e-16 Score=149.30 Aligned_cols=129 Identities=11% Similarity=0.060 Sum_probs=93.4
Q ss_pred eCcccccCccCCCCCCCCCCCcc--------hh-------hhhhHhHhhhh-----eEEeceeeeeccCcchHHHHHHHH
Q psy8157 9 LGFPKVTKPKHDSSTLNDKPPKK--------AS-------INLLKALQRYL-----RFLWAARRVAQKDLTIADIFREHA 68 (191)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~--------~~-------~rdl~~l~~~l-----~i~~~g~nv~~~e~~Ve~~~e~~l 68 (191)
++=|.|+.||+++.+.+...|.. .| +.|-.|...|+ +++.+|+||++.| || ++|
T Consensus 365 i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~e--IE----~~l 438 (620)
T 4dg8_A 365 AFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPA--LE----QRF 438 (620)
T ss_dssp EEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHH--HH----HHH
T ss_pred EeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHH--HH----HHH
Confidence 34588999999888777666644 33 23333433343 6799999999999 86 567
Q ss_pred HhCCCcccceeeeEEEEEEecCCCCCceEEEEEEcCCCCCCHHHHHHHHHhcCCCCCcccEEEEeccCCCCCCCCcchHH
Q psy8157 69 VRSPNKVIFMFENTEWTAQQVPGYEGRAGMAAILDINKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLD 148 (191)
Q Consensus 69 ~~hP~k~~~~V~eaaVvGVpd~~~~ge~~~A~Vv~~g~~~~~e~l~~~l~~~Lp~ykvP~~v~~v~eLP~T~tGKi~K~~ 148 (191)
.+||+ |.+|+|++++++ ..++.+++++... +.+.++|.++||.|++|+.+.++++||+|++|||+|++
T Consensus 439 ~~~p~-----V~~a~Vv~~~~~-~~~~lv~~~~~~~------~~~~~~l~~~Lp~y~~P~~~~~v~~lP~t~~GKidR~~ 506 (620)
T 4dg8_A 439 RRQPG-----ILDCALLVRERN-GVKQLLCAWTGKA------DASPQALLRQLPTWQRPHACVRVEALPLTAHGKLDRAA 506 (620)
T ss_dssp HTSTT-----EEEEEEEEEEET-TEEEEEEEEEECT------TCCCHHHHHHSCGGGSCSEEEECSSCCCC----CCHHH
T ss_pred HhCCC-----ccEEEEEEEeCC-CceEEEEEEecCh------HHHHHHHHHhChhhcCCcEEEEECcCCCCcccCHhHHH
Confidence 89999 999999999986 3455544444322 12345677899999999999999999999999999999
Q ss_pred HhhccCC
Q psy8157 149 LQKEGFD 155 (191)
Q Consensus 149 Lr~~~~~ 155 (191)
|++....
T Consensus 507 L~~~~~~ 513 (620)
T 4dg8_A 507 LLRRLEE 513 (620)
T ss_dssp HHHHTCS
T ss_pred Hhhcccc
Confidence 9876443
No 29
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=99.57 E-value=4.9e-16 Score=155.18 Aligned_cols=131 Identities=19% Similarity=0.185 Sum_probs=104.1
Q ss_pred eCcccccCccCCCCCCCCCCCc-------chh-------hhhhHhHhhhh-----eEEeceeeeeccCcchHHHHHHHHH
Q psy8157 9 LGFPKVTKPKHDSSTLNDKPPK-------KAS-------INLLKALQRYL-----RFLWAARRVAQKDLTIADIFREHAV 69 (191)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~-------~~~-------~rdl~~l~~~l-----~i~~~g~nv~~~e~~Ve~~~e~~l~ 69 (191)
++=|.|+.||+.+.+.+...|. ..| +.|-.|...|+ .+|.+|++|.+.| || .+|.
T Consensus 808 i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~e--IE----~~l~ 881 (1304)
T 2vsq_A 808 ISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEE--IE----KQLQ 881 (1304)
T ss_dssp EEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHH--HH----HHHH
T ss_pred EeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHH--HH----HHHH
Confidence 4558899999988776654442 123 22333433343 6789999999999 86 5668
Q ss_pred hCCCcccceeeeEEEEEEecCCCCCceEEEEEEcCCCCCCHHHHHHHHHhcCCCCCcccEEEEeccCCCCCCCCcchHHH
Q psy8157 70 RSPNKVIFMFENTEWTAQQVPGYEGRAGMAAILDINKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDL 149 (191)
Q Consensus 70 ~hP~k~~~~V~eaaVvGVpd~~~~ge~~~A~Vv~~g~~~~~e~l~~~l~~~Lp~ykvP~~v~~v~eLP~T~tGKi~K~~L 149 (191)
+||+ |.+|+|++++++ .+++..+|+|+.. ...+.++|+++|+++||.||+|..+.++++||+|++|||+|++|
T Consensus 882 ~~p~-----V~~a~V~~~~~~-~~~~~l~a~vv~~-~~~~~~~l~~~l~~~Lp~ymvP~~~~~l~~lP~t~~GKidR~~L 954 (1304)
T 2vsq_A 882 EYPG-----VKDAVVVADRHE-SGDASINAYLVNR-TQLSAEDVKAHLKKQLPAYMVPQTFTFLDELPLTTNGKVNKRLL 954 (1304)
T ss_dssp HSSS-----CCEEEEEEECCS-SSCCEEEEEEECS-SSSCHHHHHHHHHHHSCGGGSCSEEEEESCCCCCSSCSSCCSCC
T ss_pred hCCC-----CceEEEEEEecC-CCCEEEEEEEeCC-CCCCHHHHHHHHHHhChHhhhccEEEEecccCCCCCcccCHhhc
Confidence 9999 999999999986 4567778888822 25678999999999999999999999999999999999999999
Q ss_pred hhc
Q psy8157 150 QKE 152 (191)
Q Consensus 150 r~~ 152 (191)
++.
T Consensus 955 ~~~ 957 (1304)
T 2vsq_A 955 PKP 957 (1304)
T ss_dssp CCC
T ss_pred CCc
Confidence 764
No 30
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=99.49 E-value=2.9e-16 Score=143.08 Aligned_cols=135 Identities=8% Similarity=-0.092 Sum_probs=99.7
Q ss_pred eCcccccCccCCCCCCCCCCCcc-------h--h-------hhhhHhHhhhh-----eEEeceeeeeccCcchHHHHHHH
Q psy8157 9 LGFPKVTKPKHDSSTLNDKPPKK-------A--S-------INLLKALQRYL-----RFLWAARRVAQKDLTIADIFREH 67 (191)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~-------~--~-------~rdl~~l~~~l-----~i~~~g~nv~~~e~~Ve~~~e~~ 67 (191)
+.=|.||+||+++.+.+...|.. + | ..| .|...++ +|+.+|+||++.| || ++
T Consensus 404 v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~e--IE----~~ 476 (590)
T 3kxw_A 404 VQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQD--IE----FS 476 (590)
T ss_dssp EESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHH--HH----HH
T ss_pred EeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHH--HH----HH
Confidence 34589999999987777665543 3 5 233 3322222 4467889999999 86 45
Q ss_pred H-HhCCCcccceee--eEEEEEEecCCCCCceEEEEEE-cCCC--CCCHHHHHHHHHhcCCC-CCccc-EEEEe--ccCC
Q psy8157 68 A-VRSPNKVIFMFE--NTEWTAQQVPGYEGRAGMAAIL-DINK--SLDVTAVSEGIKKALPS-YARPL-FIRCL--REVE 137 (191)
Q Consensus 68 l-~~hP~k~~~~V~--eaaVvGVpd~~~~ge~~~A~Vv-~~g~--~~~~e~l~~~l~~~Lp~-ykvP~-~v~~v--~eLP 137 (191)
| ..||+ |. +|+|+|++++. ++..+++|+ .++. ..+.++|.++|+++|+. |++|. .+.++ ++||
T Consensus 477 l~~~~~~-----v~~~~~~v~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~~i~~v~~~~lP 549 (590)
T 3kxw_A 477 LMHSPLH-----HVLGKCAAFVIQEEH--EYKLTVMCEVKNRFMDDVAQDNLFNEIFELVYENHQLEVHTIVLIPLKAMP 549 (590)
T ss_dssp HHHSGGG-----GGEEEEEEEEEEETT--EEEEEEEEEESCTTCCHHHHHHHHHHHHHHHHHHHSCCCCEEEEEETTCSC
T ss_pred HHhcCcc-----ccCccEEEEEecCCC--CceEEEEEEeccccccchhHHHHHHHHHHHHHHHcCCceeEEEEECCCccC
Confidence 5 78999 88 89999999873 555666666 5443 45678899999999995 89986 67776 6999
Q ss_pred CCCCCCcchHHHhhccCCCC
Q psy8157 138 MTGTYKLKKLDLQKEGFDPN 157 (191)
Q Consensus 138 ~T~tGKi~K~~Lr~~~~~~~ 157 (191)
+|++|||+|++||+......
T Consensus 550 ~t~sGKi~R~~L~~~~~~~~ 569 (590)
T 3kxw_A 550 HTTSGKIRRNFCRKHLLDKT 569 (590)
T ss_dssp CCSCHHHHHHHHHHHHHHTC
T ss_pred cCCCcHHHHHHHHHHHHcCC
Confidence 99999999999998765533
No 31
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.46 E-value=5.6e-14 Score=103.42 Aligned_cols=94 Identities=9% Similarity=0.030 Sum_probs=67.3
Q ss_pred eEEeceeeeeccCcchHHHHHHHHHhCCCcccceeeeEEEEEEecCCCCCceEEEEEE-cCCCCCCH---HHHHHHHHhc
Q psy8157 45 RFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVPGYEGRAGMAAIL-DINKSLDV---TAVSEGIKKA 120 (191)
Q Consensus 45 ~i~~~g~nv~~~e~~Ve~~~e~~l~~hP~k~~~~V~eaaVvGVpd~~~~ge~~~A~Vv-~~g~~~~~---e~l~~~l~~~ 120 (191)
+|+.+|.|++|.+ || ++|.+||+ |.+++|+|++++ .+|+...++|+ .++...+. +++.+.++++
T Consensus 6 mIiv~G~nv~P~e--IE----~vl~~~p~-----v~~~~vv~v~~~-~~~~~~~~~V~~~~~~~~~~~~~~~l~~~i~~~ 73 (109)
T 3lax_A 6 MIILKGVNIFPIQ--IE----TILLQFKE-----LGSDYLITLETA-ESNDEMTVEVELSQLFTDDYGRLQALTREITRQ 73 (109)
T ss_dssp CEEETTEEECHHH--HH----HHHHTCTT-----EEEEEEEEEEEE-TTEEEEEEEEEECTTCCCCHHHHHHHHHHHHHH
T ss_pred EEEECCEEECHHH--HH----HHHHhCCC-----cccceEEEEecc-ccceeEEEEEEEeeccccccchhhhhHHHHHHH
Confidence 5889999999999 86 56689999 999999999987 46777777776 66555443 4455555555
Q ss_pred CCCC-CcccEEEEec--cCCCCCCCCcchHH-Hhh
Q psy8157 121 LPSY-ARPLFIRCLR--EVEMTGTYKLKKLD-LQK 151 (191)
Q Consensus 121 Lp~y-kvP~~v~~v~--eLP~T~tGKi~K~~-Lr~ 151 (191)
|..+ .+|..+.+++ +||+| |||++|.. +|+
T Consensus 74 l~~~~gv~~~v~~v~~~~lPrt-sGKi~Rv~D~R~ 107 (109)
T 3lax_A 74 LKDEILVTPRVKLVPKGALPKS-EGKAVRVKDLRK 107 (109)
T ss_dssp HHHHHSSCCEEEEECTTCSCCC----CCCEEECSC
T ss_pred HHHHhCCccceEEEcCCeecCC-CCCcchhhhhcc
Confidence 5432 3566688874 79998 79998843 554
No 32
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=99.43 E-value=6.6e-15 Score=133.31 Aligned_cols=131 Identities=15% Similarity=0.142 Sum_probs=94.3
Q ss_pred eCcccccCccCCCCCCCCCCCcchhhh--hhHh-Hhhhh--------eEEeceeeeeccCcchHHHHHHHHHhCCCcccc
Q psy8157 9 LGFPKVTKPKHDSSTLNDKPPKKASIN--LLKA-LQRYL--------RFLWAARRVAQKDLTIADIFREHAVRSPNKVIF 77 (191)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~r--dl~~-l~~~l--------~i~~~g~nv~~~e~~Ve~~~e~~l~~hP~k~~~ 77 (191)
++=|.|+.||+++...+...+..+|-| |+-. ..|+| +|+.+|+||++.+ || ++|.+||+
T Consensus 416 v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~~dG~l~~~GR~dd~ik~~G~~v~p~e--IE----~~l~~~p~---- 485 (576)
T 3gqw_A 416 ISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYLLDGYLYVTGRIKDLIIIRGRNIWPQD--IE----YIAEQEPE---- 485 (576)
T ss_dssp EESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEEETTEEEEEEETTTCEEETTEEECHHH--HH----HHHTTSSS----
T ss_pred EeCccccccccCCccccccccCCCeeeccceEEEECCEEEEEecCcceEEECCEEECHHH--HH----HHHHhCcc----
Confidence 345889999987654333333333410 1000 12333 6688999999999 86 56789999
Q ss_pred eeeeEEEEEEecCCCCCceEEEEEE-cCCCCCCHHHHHHHHHhcC-CCCCcccEEEEec--cCCCCCCCCcchHHHhhcc
Q psy8157 78 MFENTEWTAQQVPGYEGRAGMAAIL-DINKSLDVTAVSEGIKKAL-PSYARPLFIRCLR--EVEMTGTYKLKKLDLQKEG 153 (191)
Q Consensus 78 ~V~eaaVvGVpd~~~~ge~~~A~Vv-~~g~~~~~e~l~~~l~~~L-p~ykvP~~v~~v~--eLP~T~tGKi~K~~Lr~~~ 153 (191)
|.+++|+++.++. +. ..++++ ..+.....+++.++|.++| +.|++|..+.+++ +||+|++||++|++|++..
T Consensus 486 -V~~~~vv~~~~~~--~~-~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~p~~i~~v~~~~lP~t~~GKi~r~~l~~~~ 561 (576)
T 3gqw_A 486 -IHSGDAIAFVTAQ--EK-IILQIQCRISDEERRGQLIHALAARIQSEFGVTAAIDLLPPHSIPRTSSGKPARAEAKKRY 561 (576)
T ss_dssp -CCTTSEEEEECTT--SC-EEEEEECCCCCHHHHHHHHHHHHHHHHHHHSCCEEEEEECSSCSCBCTTSSBCHHHHHHHH
T ss_pred -cccccEEEEEcCC--cc-EEEEEEEecCchhHHHHHHHHHHHHHHHHhCCceeEEEECCCCcCcCCCccchHHHHHHHH
Confidence 9999999999762 23 334444 4444445678999999998 7899999999997 8999999999999999754
No 33
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.34 E-value=1e-12 Score=97.05 Aligned_cols=90 Identities=6% Similarity=-0.012 Sum_probs=65.6
Q ss_pred eEEeceeeeeccCcchHHHHHHHHHhCCCcccceeeeEEEEEEecCCCCCceEEEEEEcCCCC----CCHHHHHHHHHhc
Q psy8157 45 RFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVPGYEGRAGMAAILDINKS----LDVTAVSEGIKKA 120 (191)
Q Consensus 45 ~i~~~g~nv~~~e~~Ve~~~e~~l~~hP~k~~~~V~eaaVvGVpd~~~~ge~~~A~Vv~~g~~----~~~e~l~~~l~~~ 120 (191)
+|+.+|.|++|.+ || ++|.+||+ |.++++++++++. +++.+.++|..++.. .+.++|.+.|+++
T Consensus 6 ~Iiv~G~nv~P~e--IE----~~l~~~p~-----v~~~~~v~v~~~~-~~e~l~~~ve~~~~~~~~~~~~~~l~~~i~~~ 73 (109)
T 3gxs_A 6 MIILKGVNIFPIQ--IE----TILLQFKE-----LGSDYLITLETAE-SNDEMTVEVELSQLFTDDYGRLQALTREITRQ 73 (109)
T ss_dssp CEEETTEEECHHH--HH----HHHHTCTT-----EEEEEEEEEEEET-TEEEEEEEEEECTTCCCCHHHHHHHHHHHHHH
T ss_pred EEEECCEEECHHH--HH----HHHHhCCC-----cCCcEEEEEEcCC-CceEEEEEEEEcCccccchhHHHHHHHHHHHH
Confidence 5789999999999 86 56679999 9999999999874 566666666543332 2345666677666
Q ss_pred CC-CCCcccEEEEec--cCCCCCCCCcchH
Q psy8157 121 LP-SYARPLFIRCLR--EVEMTGTYKLKKL 147 (191)
Q Consensus 121 Lp-~ykvP~~v~~v~--eLP~T~tGKi~K~ 147 (191)
|. .+.+|..|.+++ +||+| +||++|.
T Consensus 74 l~~~~~~~~~v~~v~~~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 74 LKDEILVTPRVKLVPKGALPKS-EGKAVRV 102 (109)
T ss_dssp HHHHHSSCCEEEEECTTCSCCC----CCCE
T ss_pred HHHhhCCceEEEEECCCCccCC-CCceEEE
Confidence 64 456666899998 89999 9999885
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.28 E-value=8.5e-13 Score=116.75 Aligned_cols=95 Identities=13% Similarity=0.050 Sum_probs=77.7
Q ss_pred eEEeceeeeeccCcchHHHHHHHHHhCCCcccceeeeEEEEEEecCCCCCceEEEEEE-cC--C---CCCCHHHHHHHHH
Q psy8157 45 RFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVPGYEGRAGMAAIL-DI--N---KSLDVTAVSEGIK 118 (191)
Q Consensus 45 ~i~~~g~nv~~~e~~Ve~~~e~~l~~hP~k~~~~V~eaaVvGVpd~~~~ge~~~A~Vv-~~--g---~~~~~e~l~~~l~ 118 (191)
+++.+|+||++.+ || ++|.+||+ |.+++|++++++. .++.++|+|+ .+ + ...+.+++.++|+
T Consensus 337 ~i~~~G~~v~p~e--iE----~~l~~~p~-----V~~~~vv~~~~~~-~~~~~~a~v~~~~~~~~~~~~~~~~~l~~~l~ 404 (443)
T 2y4o_A 337 MLIVRGVNVFPSQ--IE----EIVVALPL-----LSGQFQITLSRDG-HMDRLDLAVELRSEAAASVTDGERAALARELQ 404 (443)
T ss_dssp CEEETTEEECHHH--HH----HHHHTSTT-----EEEEEEEEEEEET-TEEEEEEEEEECHHHHTTCCHHHHHHHHHHHH
T ss_pred eEEECCEEECHHH--HH----HHHHhCcC-----cCccEEEEEecCC-CCceEEEEEEECCcccccchhhHHHHHHHHHH
Confidence 5678899999999 85 56689999 9999999999874 4566777777 54 2 2345688999999
Q ss_pred hcCCCC-CcccEEEEe--ccCCCCCCCCcchHHHhh
Q psy8157 119 KALPSY-ARPLFIRCL--REVEMTGTYKLKKLDLQK 151 (191)
Q Consensus 119 ~~Lp~y-kvP~~v~~v--~eLP~T~tGKi~K~~Lr~ 151 (191)
++|+.| ++|..|.++ ++||+|++||++|...++
T Consensus 405 ~~l~~~~~~p~~v~~v~~~~lP~t~~GKi~r~~~~r 440 (443)
T 2y4o_A 405 HRIKTMVGVSSGVTVLAAGGIPATATGKARRVIDRR 440 (443)
T ss_dssp HHHHHHTCCCCEEEEECTTCSCCCTTSCCCSEEECC
T ss_pred HHHHHHhCCceEEEEeCCCcccCccCCcceEEEecc
Confidence 999987 599999998 599999999999976554
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.26 E-value=8.8e-13 Score=116.46 Aligned_cols=95 Identities=9% Similarity=0.054 Sum_probs=78.6
Q ss_pred eEEeceeeeeccCcchHHHHHHHHHhCCCcccceeeeEEEEEEecCCCCCceEEEEEE-cCCCC---CCHHHHHHHHHhc
Q psy8157 45 RFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVPGYEGRAGMAAIL-DINKS---LDVTAVSEGIKKA 120 (191)
Q Consensus 45 ~i~~~g~nv~~~e~~Ve~~~e~~l~~hP~k~~~~V~eaaVvGVpd~~~~ge~~~A~Vv-~~g~~---~~~e~l~~~l~~~ 120 (191)
+++.+|+||++.+ || ++|.+||+ |.+++|++++++. .++.++|+|+ .++.. .+.+++.++|+++
T Consensus 335 ~i~~~G~~v~p~e--iE----~~l~~~p~-----V~~~~vv~~~~~~-~~~~l~a~v~~~~~~~~~~~~~~~l~~~l~~~ 402 (437)
T 2y27_A 335 MMIVRGVNVFPTQ--IE----EQLLKQRA-----LAPHYQIVLTKEG-PLDVLTLNVEPCPETAPDTAAIQVAKQALAYD 402 (437)
T ss_dssp CEEETTEEECHHH--HH----HHHTTCTT-----BCSCCEEEEEEET-TEEEEEEEECBCTTTTTCHHHHHHHHHHHHHH
T ss_pred eEEECCeEECHHH--HH----HHHHhCcC-----cCccEEEEEeecC-CCceEEEEEEECCCccchhhhHHHHHHHHHHH
Confidence 5678999999999 85 66789999 9999999999874 5677778877 55443 3457899999999
Q ss_pred CCCC-CcccEEEEe--ccCCCCCCCCcchHHHhhc
Q psy8157 121 LPSY-ARPLFIRCL--REVEMTGTYKLKKLDLQKE 152 (191)
Q Consensus 121 Lp~y-kvP~~v~~v--~eLP~T~tGKi~K~~Lr~~ 152 (191)
|+.| ++|..|.++ ++||+|+ ||++|...++.
T Consensus 403 l~~~~~~p~~v~~v~~~~lP~t~-GKi~r~~~~R~ 436 (437)
T 2y27_A 403 IKSLIGVTAVINVLPVNGIERSV-GKARRVVDKRK 436 (437)
T ss_dssp HHHHHCCCEEEEECCTTCSCCCS-SSCCCEEECCC
T ss_pred HHHhcCCceEEEEeCCCCccCCC-CcceEEEecCC
Confidence 9998 699999999 5999999 99999876653
No 36
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.21 E-value=5.6e-12 Score=111.25 Aligned_cols=93 Identities=9% Similarity=0.108 Sum_probs=72.7
Q ss_pred eEEeceeeeeccCcchHHHHHHHHHhCCCcccceeeeEEEEEEecCCCCCceEEEEEE-cCCCCCC----HHHHHHHHHh
Q psy8157 45 RFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVPGYEGRAGMAAIL-DINKSLD----VTAVSEGIKK 119 (191)
Q Consensus 45 ~i~~~g~nv~~~e~~Ve~~~e~~l~~hP~k~~~~V~eaaVvGVpd~~~~ge~~~A~Vv-~~g~~~~----~e~l~~~l~~ 119 (191)
+|+.+|+||++.+ || ++|.+||+ |.+++|++++++. .++..+|+|+ . +...+ .+++.++|++
T Consensus 333 ~ik~~G~~v~p~e--iE----~~l~~~p~-----v~~~~vv~~~~~~-~~~~l~a~v~~~-~~~~~~~~~~~~l~~~l~~ 399 (436)
T 3qov_A 333 MFIIKGVNIFPMQ--VE----KILVQFPE-----LGSNYLITLETVN-NQDEMIVEVELS-DLSTDNYIELEKIRRDIIR 399 (436)
T ss_dssp CEEETTEEECHHH--HH----HHHTTCTT-----EEEEEEEEEEEET-TEEEEEEEEEEC-TTCCCCHHHHHHHHHHHHH
T ss_pred EEEECCEEECHHH--HH----HHHHhCcC-----cCCcEEEEEEcCC-CCcEEEEEEEEc-CccccchhhHHHHHHHHHH
Confidence 6788999999999 85 56789999 9999999999873 5677788887 6 55554 6889999999
Q ss_pred cCCCC-CcccEEEEec--cCCCCCCCCcchHHHhh
Q psy8157 120 ALPSY-ARPLFIRCLR--EVEMTGTYKLKKLDLQK 151 (191)
Q Consensus 120 ~Lp~y-kvP~~v~~v~--eLP~T~tGKi~K~~Lr~ 151 (191)
+|+.| ++|..+.+++ +||+|+ ||++|...++
T Consensus 400 ~l~~~~~~p~~i~~v~~~~lP~t~-GKi~R~~~~R 433 (436)
T 3qov_A 400 QLKDEILVTPKVKLVKKGSLPQSE-GKAVRVKDLR 433 (436)
T ss_dssp HHHHHHSSCCEEEEECTTCCC--------CEEECS
T ss_pred HHHHhcCCceEEEEeCCCcccCcC-CcceEEEecC
Confidence 99999 9999999999 999999 9999875543
No 37
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=26.87 E-value=1.2e+02 Score=19.31 Aligned_cols=46 Identities=2% Similarity=-0.076 Sum_probs=29.6
Q ss_pred HHHHHHHhCCCcccceeeeEEEEEEecCCCCCceEEEEEEcCCCCCCHHHHHHHHHhcCCC
Q psy8157 63 IFREHAVRSPNKVIFMFENTEWTAQQVPGYEGRAGMAAILDINKSLDVTAVSEGIKKALPS 123 (191)
Q Consensus 63 ~~e~~l~~hP~k~~~~V~eaaVvGVpd~~~~ge~~~A~Vv~~g~~~~~e~l~~~l~~~Lp~ 123 (191)
.|.+.+.++|+ |.+|..+.-+ ... ++-+.. .+.+++.+++.++|..
T Consensus 17 ~~~~~l~~~pe-----V~~~~~vtG~-----~d~-l~~v~~----~d~~~l~~~~~~~l~~ 62 (83)
T 2zbc_A 17 EVFERLKSMSE-----VTEVHVVYGV-----YDI-VVKVEA----DSMDKLKDFVTNTIRK 62 (83)
T ss_dssp HHHHHHTTCTT-----EEEEEECSSS-----CSE-EEEEEC----SSHHHHHHHHHHTGGG
T ss_pred HHHHHHhCCCC-----eEEEEEEecc-----CCE-EEEEEE----CCHHHHHHHHHHHhcC
Confidence 45678899999 9998776221 122 233332 2678888888777765
Done!