RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8157
(191 letters)
>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated.
Length = 600
Score = 126 bits (318), Expect = 4e-34
Identities = 47/98 (47%), Positives = 67/98 (68%), Gaps = 2/98 (2%)
Query: 88 QVPGYEGRAGMAAI-LDINKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKK 146
+VPG +GRAGMAAI L D+ A++ + + LP+YA PLF+R + E+E TGT+K +K
Sbjct: 496 EVPGTDGRAGMAAIVLADGAEFDLAALAAHLYERLPAYAVPLFVRLVPELETTGTFKYRK 555
Query: 147 LDLQKEGFDPNVIQDRLYYLSSK-GVYEELTPEVYKDL 183
+DL+KEGFDP+ + D LY L G Y LT E+Y ++
Sbjct: 556 VDLRKEGFDPSKVDDPLYVLDPGSGGYVPLTAELYAEI 593
Score = 37.2 bits (87), Expect = 0.004
Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 36 LLKALQRYLRFL-WAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQV 89
L L LR L A ++ D+F E A R P++ +FE+ + ++
Sbjct: 14 RLPDLPGILRGLKRTALITPDSKRSLGDVFEEAAARHPDRPALLFEDQSISYAEL 68
>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP),
including FATP4 and FATP1, and similar proteins. Fatty
acid transport protein (FATP) transports long-chain or
very-long-chain fatty acids across the plasma membrane.
At least five copies of FATPs are identified in
mammalian cells. This family includes FATP4, FATP1, and
homologous proteins. Each FATP has unique patterns of
tissue distribution. FATP4 is mainly expressed in the
brain, testis, colon and kidney. FATPs also have fatty
acid CoA synthetase activity, thus playing dual roles as
fatty acid transporters and its activation enzymes.
FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis.
Length = 474
Score = 103 bits (259), Expect = 3e-26
Identities = 42/69 (60%), Positives = 53/69 (76%)
Query: 88 QVPGYEGRAGMAAILDINKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKL 147
+VPG EGRAGMAAI+D + +D+ S + K+LP YARP FIR L EV+ TGT+KL+K
Sbjct: 406 EVPGVEGRAGMAAIVDPERKVDLDRFSAVLAKSLPPYARPQFIRLLPEVDKTGTFKLQKT 465
Query: 148 DLQKEGFDP 156
DLQKEG+DP
Sbjct: 466 DLQKEGYDP 474
>gnl|CDD|213304 cd05938, hsFATP2a_ACSVL_like, Fatty acid transport proteins (FATP)
including hsFATP2, hsFATP5, and hsFATP6, and similar
proteins. Fatty acid transport proteins (FATP) of this
family transport long-chain or very-long-chain fatty
acids across the plasma membrane. At least five copies
of FATPs are identified in mammalian cells. This family
includes hsFATP2, hsFATP5, and hsFATP6, and similar
proteins. Each FATP has unique patterns of tissue
distribution. These FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. The hsFATP
proteins exist in two splice variants; the b variant,
lacking exon 3, has no acyl-CoA synthetase activity.
FATPs are key players in the trafficking of exogenous
fatty acids into the cell and in intracellular fatty
acid homeostasis.
Length = 535
Score = 95.9 bits (239), Expect = 2e-23
Identities = 43/94 (45%), Positives = 65/94 (69%), Gaps = 2/94 (2%)
Query: 89 VPGYEGRAGMAA-ILDINKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKL 147
VPG+EGRAGMAA IL D+ + + +++ LP+YARP F+R +E+TGT+K +K+
Sbjct: 442 VPGHEGRAGMAAVILKPGTEFDLEKLYQHVREFLPAYARPRFLRIQDSMEVTGTFKQQKV 501
Query: 148 DLQKEGFDPNVIQDRLYYL-SSKGVYEELTPEVY 180
L +EGF+P++I D LY+L + + Y LT E+Y
Sbjct: 502 RLVEEGFNPSIISDPLYFLDNREKSYVPLTQEIY 535
>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual
roles as fatty acid transporters and its activation
enzymes. Fatty acid transport protein (FATP) transports
long-chain or very-long-chain fatty acids across the
plasma membrane. FATPs also have fatty acid CoA
synthetase activity, thus playing dual roles as fatty
acid transporters and its activation enzymes. At least
five copies of FATPs are identified in mammalian cells.
This family also includes prokaryotic FATPs. FATPs are
the key players in the trafficking of exogenous fatty
acids into the cell and in intracellular fatty acid
homeostasis.
Length = 444
Score = 95.0 bits (237), Expect = 4e-23
Identities = 37/70 (52%), Positives = 49/70 (70%), Gaps = 1/70 (1%)
Query: 88 QVPGYEGRAGMAAI-LDINKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKK 146
+VPG EGRAGMAA+ L + D A + + + LP+YARPLF+R +E TGT+K +K
Sbjct: 375 EVPGTEGRAGMAALTLAPGAAFDPQAFAAHLDEQLPAYARPLFLRVQAAMETTGTFKYQK 434
Query: 147 LDLQKEGFDP 156
DL+KEGFDP
Sbjct: 435 TDLRKEGFDP 444
>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of
bifunctional fatty acid transporter/very-long-chain
acyl-CoA synthetase in fungi. Fatty acid transport
protein (FATP) transports long-chain or very-long-chain
fatty acids across the plasma membrane. FATPs also have
fatty acid CoA synthetase activity, thus playing dual
roles as fatty acid transporters and its activation
enzymes. FATPs are the key players in the trafficking of
exogenous fatty acids into the cell and in intracellular
fatty acid homeostasis. Members of this family are
fungal FATPs, including FAT1 from Cochliobolus
heterostrophus.
Length = 468
Score = 67.5 bits (165), Expect = 2e-13
Identities = 35/73 (47%), Positives = 44/73 (60%), Gaps = 5/73 (6%)
Query: 89 VPGYEGRAGMAAILDINKSLDVT-----AVSEGIKKALPSYARPLFIRCLREVEMTGTYK 143
VPGY+GRAG AAI S T +++ +K LPSYA PLF+R EV TG +K
Sbjct: 396 VPGYDGRAGCAAITLEESSAVETEFTKNLLAKLARKRLPSYAVPLFLRLTEEVATTGNHK 455
Query: 144 LKKLDLQKEGFDP 156
+K L+KEG DP
Sbjct: 456 QQKGVLRKEGVDP 468
>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated.
Length = 523
Score = 31.4 bits (72), Expect = 0.23
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 59 TIADIFREHAVRSPNKVIFMFENTEWTAQQ 88
TI DI R A R P+K +F + WT +
Sbjct: 12 TIGDILRRSARRYPDKTALVFGDRSWTYAE 41
>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase;
Provisional.
Length = 542
Score = 31.3 bits (71), Expect = 0.33
Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 98 MAAI-LDINKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGFDP 156
MAA+ L +L+ A+ + L +A P ++ + + T K++K L+++G
Sbjct: 466 MAAVVLRDGTALEPVALVRHCEPRLAYFAVPRYVEFVAALPKTENGKVQKFVLREQGVTA 525
Query: 157 N 157
+
Sbjct: 526 D 526
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases
II [Lipid metabolism / Secondary metabolites
biosynthesis, transport, and catabolism].
Length = 534
Score = 30.5 bits (69), Expect = 0.50
Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 15/88 (17%)
Query: 83 EWTAQQVPG------------YEGRAGMAAI-LDINKSLDVTA--VSEGIKKALPSYARP 127
E + P G +A + L ++TA + ++K L Y P
Sbjct: 440 EAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELTAEELRAFLRKRLALYKVP 499
Query: 128 LFIRCLREVEMTGTYKLKKLDLQKEGFD 155
+ + E+ T + K+ + L++E
Sbjct: 500 RIVVFVDELPRTASGKIDRRALREEYRA 527
>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated.
Length = 529
Score = 30.0 bits (68), Expect = 0.69
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 98 MAAI-LDINKSLDVTAVSEGI--KKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGF 154
MAA+ L D A +E + + L P ++R E+ T T+K+ K L EG
Sbjct: 447 MAALVLAPGAKFDPDAFAEFLAAQPDLGPKQWPSYVRVCAELPRTATFKVLKRQLSAEGV 506
Query: 155 D 155
D
Sbjct: 507 D 507
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.
Length = 521
Score = 30.2 bits (69), Expect = 0.76
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 58 LTIADIFREHAVRSPNKVIFMFENTEWT 85
LTI I R A + P+K F+ T
Sbjct: 6 LTIGRILRHGARKHPDKEAVYFDGRRTT 33
>gnl|CDD|236121 PRK07868, PRK07868, acyl-CoA synthetase; Validated.
Length = 994
Score = 30.1 bits (68), Expect = 0.83
Identities = 17/77 (22%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 107 SLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGFDPNVIQDRLYYL 166
++ ++E + +LP P + + E+ ++ TY+ L+ G P + Y+
Sbjct: 911 AITAADLTEALA-SLPVGLGPDIVHVVPEIPLSATYRPTVSALRAAGI-PKPGRQAWYFD 968
Query: 167 SSKGVYEELTPEVYKDL 183
Y LTP V +L
Sbjct: 969 PETNRYRRLTPAVRAEL 985
>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase.
Proteins in this family belong to the AMP-binding
enzyme family (pfam00501). Members activate
2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP
with the release of pyrophosphate; many are involved in
synthesis of siderophores such as enterobactin,
vibriobactin, vulnibactin, etc. The most closely
related proteine believed to differ in function
activates salicylate rather than DHB [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 526
Score = 29.8 bits (67), Expect = 0.98
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 50 ARRVAQK----DLTIADIFREHAVRSPNKVIFMFENTEWTAQQV 89
A R +K D + DI R+ A R P+ + + N +W+ +++
Sbjct: 11 AERYREKGYWQDKPLTDILRDQAARYPDAIAIICGNRQWSYREL 54
>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional.
Length = 540
Score = 29.6 bits (67), Expect = 1.0
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 121 LPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGFDPNVIQDRLYYLSSKGVYEELTPEVY 180
L + A P ++R ++ T T K+ K +L +G+ L+ Y ++
Sbjct: 472 LGTKAWPRYVRIAADLPSTATNKVLKRELIAQGWA-TGDPVTLWVRRGGPAYRLMSEPAK 530
Query: 181 KDLVQEF 187
L EF
Sbjct: 531 AALAAEF 537
>gnl|CDD|130587 TIGR01524, ATPase-IIIB_Mg, magnesium-translocating P-type ATPase.
This model describes the magnesium translocating
P-type ATPase found in a limited number of bacterial
species and best described in Salmonella typhimurium,
which contains two isoforms. These transporters are
active in low external Mg2+ concentrations and pump the
ion into the cytoplasm. The magnesium ATPases have been
classified as type IIIB by a phylogenetic analysis
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 867
Score = 29.4 bits (66), Expect = 1.3
Identities = 15/51 (29%), Positives = 19/51 (37%)
Query: 25 NDKPPKKASINLLKALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKV 75
N KK NLLK Q L V + LT ++ A PN+
Sbjct: 1 NKLHVKKQGNNLLKESQMGKETLLRKLGVHETGLTNVEVTERLAEFGPNQT 51
>gnl|CDD|233280 TIGR01128, holA, DNA polymerase III, delta subunit. DNA polymerase
III delta (holA) and delta prime (holB) subunits are
distinct proteins encoded by separate genes. The delta
prime subunit (holB) exhibits sequence homology to the
tau and gamma subunits (dnaX), but the delta subunit
(holA) does not demonstrate this same homology with
dnaX. The delta, delta prime, gamma, chi and psi
subunits form the gamma complex subassembly of DNA
polymerase III holoenzyme, which couples ATP to assemble
the ring-shaped beta subunit around DNA forming a DNA
sliding clamp [DNA metabolism, DNA replication,
recombination, and repair].
Length = 302
Score = 29.1 bits (66), Expect = 1.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 30 KKASINLLKALQRYLRFLWAARRVAQKDLTIADIFREHAV 69
+ + LL LQR LR L +R+AQ+ +A + + +
Sbjct: 209 GEEPLILLALLQRQLRLLLQLKRLAQQGGPLAQLASKLGI 248
>gnl|CDD|197318 cd09084, EEP-2, Exonuclease-Endonuclease-Phosphatase (EEP) domain
superfamily; uncharacterized family 2. This family of
uncharacterized proteins belongs to a superfamily that
includes the catalytic domain
(exonuclease/endonuclease/phosphatase, EEP, domain) of a
diverse set of proteins including the ExoIII family of
apurinic/apyrimidinic (AP) endonucleases, inositol
polyphosphate 5-phosphatases (INPP5), neutral
sphingomyelinases (nSMases), deadenylases (such as the
vertebrate circadian-clock regulated nocturnin),
bacterial cytolethal distending toxin B (CdtB),
deoxyribonuclease 1 (DNase1), the endonuclease domain of
the non-LTR retrotransposon LINE-1, and related domains.
These diverse enzymes share a common catalytic mechanism
of cleaving phosphodiester bonds; their substrates range
from nucleic acids to phospholipids and perhaps,
proteins.
Length = 246
Score = 28.4 bits (64), Expect = 1.8
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
Query: 23 TLNDKPPKKASINLLKALQRYLRFLWAA--RRVAQKDLTIADIFREHAVRSPNKVI 76
T +DK K + + LR L A RR AQ AD+ SP VI
Sbjct: 120 TPSDKELYKEEKKAKELSRNLLRKLAEAFKRRAAQ-----ADLLAADIAASPYPVI 170
>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related
proteins [Secondary metabolites biosynthesis, transport,
and catabolism].
Length = 642
Score = 28.4 bits (63), Expect = 2.4
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 32 ASINLLKALQRYLRFLWAARRVA-QKDLTIADIFREHAVRSPNKVIFMFENTEWTAQQVP 90
+++ LL +R +W A LTI +F E A +P+ V + + T ++
Sbjct: 203 SALPLLLPSER---EVWNALAAPIPLRLTIHLLFEEQAATTPDAVALVRGGQQLTYAELD 259
Query: 91 GYEGR 95
R
Sbjct: 260 ARANR 264
>gnl|CDD|221997 pfam13233, Complex1_LYR_2, Complex1_LYR-like. This is a family
of proteins carrying the LYR motif of family
Complex1_LYR, pfam05347, likely to be involved in Fe-S
cluster biogenesis in mitochondria.
Length = 97
Score = 26.6 bits (59), Expect = 3.7
Identities = 9/45 (20%), Positives = 18/45 (40%)
Query: 35 NLLKALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMF 79
LL+ L +Y ++ + FR HA + +++ F
Sbjct: 7 ELLRELPKYPLRYNLLSSLSLGRRYVRKEFRRHAGATDDELAKEF 51
>gnl|CDD|129482 TIGR00387, glcD, glycolate oxidase, subunit GlcD. This protein,
the glycolate oxidase GlcD subunit, is similar in
sequence to that of several D-lactate dehydrogenases,
including that of E. coli. The glycolate oxidase has
been found to have some D-lactate dehydrogenase activity
[Energy metabolism, Other].
Length = 413
Score = 27.4 bits (61), Expect = 5.2
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 7/82 (8%)
Query: 72 PNKVIFM--FENTEWTAQQVPGYEGRAGMAAILDINKSLDVTAVSEGIKKALPSYARPLF 129
N V+ + F++ E Q V + A ++ +L + AV + LP A +
Sbjct: 175 ENIVVALAFFDSIEKAMQAVYDIIAAGIIPAGMEFLDNLSIKAVEDISGIGLPKDAGAIL 234
Query: 130 IRCLREVEMTGTYKLKKLDLQK 151
+ VE+ G ++ + D +K
Sbjct: 235 L-----VEIDGVHEAVERDEEK 251
>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 439
Score = 27.3 bits (61), Expect = 5.2
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 110 VTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQK 151
T + E +K L ++ P I + E+ MT T K+++ +L++
Sbjct: 398 ATELQELVKSRLAAHEYPREIEFVDELPMTTTGKIRRRELRR 439
>gnl|CDD|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA
synthetases. Methionine tRNA synthetase (MetRS)
catalytic core domain. This class I enzyme aminoacylates
the 2'-OH of the nucleotide at the 3' of the appropriate
tRNA. MetRS, which consists of the core domain and an
anti-codon binding domain, functions as a monomer.
However, in some species the anti-codon binding domain
is followed by an EMAP domain. In this case, MetRS
functions as a homodimer. The core domain is based on
the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains the characteristic
class I HIGH and KMSKS motifs, which are involved in ATP
binding. As a result of a deletion event, MetRS has a
significantly shorter core domain insertion than IleRS,
ValRS, and LeuR. Consequently, the MetRS insertion
lacks the editing function.
Length = 319
Score = 27.1 bits (61), Expect = 6.5
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 11/51 (21%)
Query: 150 QKEGFDPNVIQDRLYYLSSKGVYEEL----------TPEVYKDLVQEFWKT 190
++EG P + D+ Y+ K +++ L T +K++VQEF+K
Sbjct: 58 EEEGVTPQELCDK-YHEIFKDLFKWLNISFDYFIRTTSPRHKEIVQEFFKK 107
>gnl|CDD|205150 pfam12925, APP_E2, E2 domain of amyloid precursor protein. The E2
domain is the largest of the conserved domains of the
amyloid precursor protein. The structure of E2 consists
of two coiled-coil sub-structures connected through a
continuous helix, and bears an unexpected resemblance to
the spectrin family of protein structures.E 2 can
reversibly dimerise in solution, and the dimerisation
occurs along the longest dimension of the molecule in an
antiparallel orientation, which enables the N-terminal
substructure of one monomer to pack against the
C-terminal substructure of a second monomer. The high
degree of conservation of residues at the putative dimer
interface suggests that the E2 dimer observed in the
crystal could be physiologically relevant. Heparin
sulfate proteoglycans, the putative ligands for the
precursor present in extracellular matrix, bind to E2 at
a conserved and positively charged site near the dimer
interface.
Length = 193
Score = 26.6 bits (59), Expect = 7.5
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 23 TLNDKPPKKASINLLKALQRYLRFLWAARR 52
L +PP I LKAL+RY+R R+
Sbjct: 123 ALQAEPPNPHKI--LKALKRYIRAEQKDRQ 150
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.391
Gapped
Lambda K H
0.267 0.0668 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,855,292
Number of extensions: 915972
Number of successful extensions: 898
Number of sequences better than 10.0: 1
Number of HSP's gapped: 894
Number of HSP's successfully gapped: 30
Length of query: 191
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 100
Effective length of database: 6,901,388
Effective search space: 690138800
Effective search space used: 690138800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.5 bits)