RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8157
(191 letters)
>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin
synthetase 1 {Bacillus brevis [TaxId: 1393]}
Length = 514
Score = 37.2 bits (85), Expect = 7e-04
Identities = 10/61 (16%), Positives = 26/61 (42%)
Query: 89 VPGYEGRAGMAAILDINKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLD 148
++ + + A K + + + + + LP+Y P + L ++ +T K+ +
Sbjct: 447 HKDHQEQPYLCAYFVSEKHIPLEQLRQFSSEELPTYMIPSYFIQLDKMPLTSNGKIDRKQ 506
Query: 149 L 149
L
Sbjct: 507 L 507
Score = 36.8 bits (84), Expect = 9e-04
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 56 KDLTIADIFREHAVRSPNKVIFMFENTEWTAQQV 89
+D TI +F E + PN V + EN + T ++
Sbjct: 21 RDKTIHQLFEEQVSKRPNNVAIVCENEQLTYHEL 54
>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus
subtilis [TaxId: 1423]}
Length = 536
Score = 36.5 bits (83), Expect = 0.001
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 57 DLTIADIFREHAVRSPNKVIFMFENTEWTAQQV 89
T D+ R+ A + +++ NT W+ +++
Sbjct: 24 GETFGDLLRDRAAKYGDRIAITCGNTHWSYREL 56
>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes
sp. [TaxId: 512]}
Length = 503
Score = 32.7 bits (73), Expect = 0.024
Identities = 10/61 (16%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 94 GRAGMAAI-LDINKSLDVTAVSEGIKKA-LPSYARPLFIRCLREVEMTGTYKLKKLDLQK 151
G++ A + + ++L A+ + + L + RP L ++ K+ + L +
Sbjct: 441 GQSVTACVVPRLGETLSADALDTFCRSSELADFKRPKRYFILDQLPKNALNKVLRRQLVQ 500
Query: 152 E 152
+
Sbjct: 501 Q 501
Score = 30.4 bits (67), Expect = 0.12
Identities = 6/33 (18%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 59 TIADIFREHAVRSPNK--VIFMFENTEWTAQQV 89
T+ ++ R A R+P+ + T ++
Sbjct: 3 TVNEMLRRAATRAPDHCALAVPARGLRLTHAEL 35
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica
[TaxId: 28901]}
Length = 643
Score = 31.2 bits (70), Expect = 0.082
Identities = 13/67 (19%), Positives = 24/67 (35%)
Query: 109 DVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQKEGFDPNVIQDRLYYLSS 168
V ++K + A P + + T + K+ + L+K L+
Sbjct: 571 LYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDTSNLGDTSTLAD 630
Query: 169 KGVYEEL 175
GV E+L
Sbjct: 631 PGVVEKL 637
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 640
Score = 30.2 bits (67), Expect = 0.17
Identities = 9/59 (15%), Positives = 25/59 (42%)
Query: 93 EGRAGMAAILDINKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTYKLKKLDLQK 151
+ ++ + D + ++K + +A P I + ++ T + K+ + L+K
Sbjct: 552 KNKSSWSTATDDELQDIKKHLVFTVRKDIGPFAAPKLIILVDDLPKTRSGKIMRRILRK 610
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168
{Thermus thermophilus [TaxId: 274]}
Length = 534
Score = 27.5 bits (60), Expect = 0.99
Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 4/37 (10%)
Query: 57 DLTIADIFREHAVRSPNKVIFMF----ENTEWTAQQV 89
+L + D A K + E T +V
Sbjct: 10 ELNLWDFLERAAALFGRKEVVSRLHTGEVHRTTYAEV 46
>d1bl0a2 a.4.1.8 (A:63-124) MarA {Escherichia coli [TaxId: 562]}
Length = 62
Score = 24.1 bits (52), Expect = 3.6
Identities = 4/35 (11%), Positives = 13/35 (37%)
Query: 45 RFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMF 79
+ A+++ + + I + + S + F
Sbjct: 2 KMTEIAQKLKESNEPILYLAERYGFESQQTLTRTF 36
>d1szwa_ d.265.1.4 (A:) tRNA pseudouridine synthase TruD
{Escherichia coli [TaxId: 562]}
Length = 341
Score = 25.8 bits (56), Expect = 3.9
Identities = 14/116 (12%), Positives = 32/116 (27%), Gaps = 2/116 (1%)
Query: 27 KPPKKASINLLKALQRYLRFLWAARRVAQKDLTIADIFREHAVRSPNKVIFMFENTEWTA 86
+ L A + L A R+ + D+ + + + F+ E
Sbjct: 185 VRDRNKRSFWLSAARSALFNQIVAERLKKADVNQV-VDGDALQLAGRGSWFVATTEELAE 243
Query: 87 QQVPGYEGRAGMAAILDINKSLDVTAVSEGIKKALPSYARPLFIRCLREVEMTGTY 142
Q + + A L + + ++A + A L ++
Sbjct: 244 LQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVA-AETELQALLVREKVEAAR 298
>d1rw6a_ a.47.4.1 (A:) CAPPD, an extracellular domain of amyloid
beta A4 protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 25.2 bits (55), Expect = 4.3
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 16/48 (33%)
Query: 23 TLNDKPPKKASINLLKALQRYLRFLWAARRVAQKDLTIADIFREHAVR 70
L PP+ + L++Y+ R QKD R+H ++
Sbjct: 106 ALQAVPPRPRHV--FNMLKKYV-------RAEQKD-------RQHTLK 137
>d1g8ka2 c.81.1.1 (A:4-682) Arsenite oxidase large subunit
{Alcaligenes faecalis [TaxId: 511]}
Length = 679
Score = 25.5 bits (54), Expect = 4.6
Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 36 LLKALQRYLRFLWAARRVAQKDL----TIADIFREHAVRSPNKVIFMFENTEWTAQQVPG 91
+ AL+ + A AQ + T D F + R+ ++ + +
Sbjct: 567 IANALRDMYQKDGKAEMAAQFEGFDWKTEEDAFNDGFRRAGQPGAPAIDSQGGSTGHLVT 626
Query: 92 YE 93
Y+
Sbjct: 627 YD 628
>d2bhma1 d.17.4.26 (A:97-235) Type IV secretion system protein VirB8
{Brucella melitensis [TaxId: 29459]}
Length = 139
Score = 24.5 bits (53), Expect = 6.6
Identities = 6/36 (16%), Positives = 11/36 (30%), Gaps = 5/36 (13%)
Query: 152 EGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQEF 187
E +D +Q V +P + +F
Sbjct: 19 ETYDWYTLQKDYET-----VGMLSSPSEGQSYASQF 49
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase
{Garden sage (Salvia officinalis) [TaxId: 38868]}
Length = 328
Score = 24.9 bits (54), Expect = 7.8
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 150 QKEGFDPNVIQDRLYYLSSKGVYEELTPEVYKDLVQEFWKT 190
G P IQ Y+ EE E K L++E WK
Sbjct: 235 LARGDVPKTIQ---CYMKETNASEEEAVEHVKFLIREAWKD 272
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.391
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 709,956
Number of extensions: 31773
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 20
Length of query: 191
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,309,196
Effective search space: 145320756
Effective search space used: 145320756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.8 bits)