BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy816
         (138 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
          Length = 551

 Score = 28.5 bits (62), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 32  LRVQLADAGKGIQLTWSLDTTSDMAAIES 60
           LRV LA+ G G +L W  D  S M  + S
Sbjct: 331 LRVHLAEKGDGAELIWDKDDPSAMDFVTS 359


>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic
          Length = 660

 Score = 28.5 bits (62), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 32  LRVQLADAGKGIQLTWSLDTTSDMAAIES 60
           LRV LA+ G G +L W  D  S M  + S
Sbjct: 349 LRVHLAEKGDGAELIWDKDDPSAMDFVTS 377


>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
 pdb|1Y8Q|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
 pdb|1Y8R|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
 pdb|1Y8R|E Chain E, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
          Length = 640

 Score = 28.5 bits (62), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 32  LRVQLADAGKGIQLTWSLDTTSDMAAIES 60
           LRV LA+ G G +L W  D  S M  + S
Sbjct: 329 LRVHLAEKGDGAELIWDKDDPSAMDFVTS 357


>pdb|2PX9|A Chain A, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
           In Ubiquitin-Like Modifications
          Length = 217

 Score = 28.1 bits (61), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 13/29 (44%), Positives = 16/29 (55%)

Query: 32  LRVQLADAGKGIQLTWSLDTTSDMAAIES 60
           LRV LA+ G G +L W  D  S M  + S
Sbjct: 164 LRVHLAEKGDGAELIWDKDDPSAMDFVTS 192


>pdb|2P4F|A Chain A, Crystal Structure Of Atp11 Functional Domain From Candida
           Glabrata
          Length = 299

 Score = 26.9 bits (58), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 81  NIGKLEALPLPMACTLTQFTAGHTYHFLVRAIDVYKRYSAFSNPGT 126
           N    +++P+ +     QF   +T H L+ ++  YK +  F+ P T
Sbjct: 170 NKADKDSVPVELQYVQWQFAGPNTVHCLITSLAEYKLHQDFAKPHT 215


>pdb|1ME8|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
           Tritrichomonas Foetus With Rvp Bound
 pdb|1ME9|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
           Tritrichomonas Foetus With Imp Bound
 pdb|1MEH|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
           Tritrichomonas Foetus With Imp And Moa Bound
          Length = 503

 Score = 25.8 bits (55), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 43  IQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGKLEALPL 90
           I LT +    SDM    S  + A+Q+ K    N  +W+   KL ALP+
Sbjct: 154 IDLTQTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEK--KLNALPI 199


>pdb|1ME7|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
           Tritrichomonas Foetus With Rvp And Moa Bound
 pdb|1MEI|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
           Tritrichomonas Foetus With Xmp And Mycophenolic Acid
           Bound
 pdb|1MEW|A Chain A, Inosine Monophosphate Dehydrogenase (Impdh) From
           Tritrichomonas Foetus With Xmp And Nad Bound
 pdb|1AK5|A Chain A, Inosine Monophosphate Dehydrogenase (impdh) From
           Tritrichomonas Foetus
          Length = 503

 Score = 25.8 bits (55), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 43  IQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGKLEALPL 90
           I LT +    SDM    S  + A+Q+ K    N  +W+   KL ALP+
Sbjct: 154 IDLTQTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEK--KLNALPI 199


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.130    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,646,234
Number of Sequences: 62578
Number of extensions: 128882
Number of successful extensions: 257
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 251
Number of HSP's gapped (non-prelim): 9
length of query: 138
length of database: 14,973,337
effective HSP length: 89
effective length of query: 49
effective length of database: 9,403,895
effective search space: 460790855
effective search space used: 460790855
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)