BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy816
(138 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A0JME2|MCAF1_DANRE Activating transcription factor 7-interacting protein 1 OS=Danio
rerio GN=atf7ip PE=1 SV=2
Length = 815
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 73/113 (64%), Gaps = 5/113 (4%)
Query: 27 PAAPKLRVQLADAGKGIQLTWSL-DTTSDMAAIESYQLYAYQENKNVPVNSS----LWKN 81
P P+L++ + GI L+W + +T + AA+++Y LYAY ++ V+ + LWK
Sbjct: 699 PQQPQLKLARVQSQNGIVLSWCVAETDRNCAAVDTYHLYAYHQDHQSSVSGASAQMLWKK 758
Query: 82 IGKLEALPLPMACTLTQFTAGHTYHFLVRAIDVYKRYSAFSNPGTIHLRTPAT 134
IG+++ALPLPMACTLTQF +G TY+F VRA DVY R+ F P + TPA+
Sbjct: 759 IGEVKALPLPMACTLTQFVSGSTYYFAVRAKDVYGRFGPFCEPQCTDVITPAS 811
>sp|Q5ZIE8|MCAF1_CHICK Activating transcription factor 7-interacting protein 1 OS=Gallus
gallus GN=ATF7IP PE=2 SV=1
Length = 1085
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 76/127 (59%), Gaps = 10/127 (7%)
Query: 6 RAPVPPT--PSVSNVVGAMYEMVPAAPKLRVQLADAGKGIQLTWS-LDTTSDMAAIESYQ 62
AP PP P +N +P P+L++ + GI L+WS ++ A+++SY
Sbjct: 960 EAPQPPRLPPEAANT------SLPQKPQLKLARVQSQNGIVLSWSVIEVDRSCASVDSYH 1013
Query: 63 LYAYQENKNVPVNSSLWKNIGKLEALPLPMACTLTQFTAGHTYHFLVRAIDVYKRYSAFS 122
LYAY E+ + + S WK IG+++ALPLPMACTLTQF +G Y+F VRA D+Y R+ F
Sbjct: 1014 LYAYHEDPSATM-PSQWKKIGEVKALPLPMACTLTQFVSGSKYYFAVRAKDIYGRFGPFC 1072
Query: 123 NPGTIHL 129
+P + +
Sbjct: 1073 DPQSTDV 1079
>sp|Q7TT18|MCAF1_MOUSE Activating transcription factor 7-interacting protein 1 OS=Mus
musculus GN=Atf7ip PE=1 SV=1
Length = 1306
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
Query: 26 VPAAPKLRVQLADAGKGIQLTWS-LDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGK 84
+P P L++ + GI L+WS L+ A ++SY LYAY E + V S WK IG+
Sbjct: 1196 LPQKPHLKLARVQSQNGIVLSWSVLEVDRSCATVDSYHLYAYHEEPSATV-PSQWKKIGE 1254
Query: 85 LEALPLPMACTLTQFTAGHTYHFLVRAIDVYKRYSAFSNPGTIHL 129
++ALPLPMACTLTQF +G Y+F VRA D+Y R+ F +P + +
Sbjct: 1255 VKALPLPMACTLTQFVSGSKYYFAVRAKDIYGRFGPFCDPQSTDV 1299
>sp|Q6VMQ6|MCAF1_HUMAN Activating transcription factor 7-interacting protein 1 OS=Homo
sapiens GN=ATF7IP PE=1 SV=3
Length = 1270
Score = 98.6 bits (244), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
Query: 26 VPAAPKLRVQLADAGKGIQLTWS-LDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGK 84
+P P L++ + GI L+WS L+ A ++SY LYAY E + V S WK IG+
Sbjct: 1160 LPQKPHLKLARVQSQNGIVLSWSVLEVDRSCATVDSYHLYAYHEEPSATV-PSQWKKIGE 1218
Query: 85 LEALPLPMACTLTQFTAGHTYHFLVRAIDVYKRYSAFSNPGTIHL 129
++ALPLPMACTLTQF +G Y+F VRA D+Y R+ F +P + +
Sbjct: 1219 VKALPLPMACTLTQFVSGSKYYFAVRAKDIYGRFGPFCDPQSTDV 1263
>sp|Q5U623|MCAF2_HUMAN Activating transcription factor 7-interacting protein 2 OS=Homo
sapiens GN=ATF7IP2 PE=2 SV=2
Length = 682
Score = 84.7 bits (208), Expect = 2e-16, Method: Composition-based stats.
Identities = 43/102 (42%), Positives = 64/102 (62%), Gaps = 4/102 (3%)
Query: 27 PAAPKLRVQLADAGKGIQLTWSLDTTS-DMAAIESYQLYAYQENKNVPVNSSLWKNIGKL 85
P P+L+V+ GI LTW++ + A +ESY L+ EN N N +WK IG++
Sbjct: 576 PQKPELKVKRVFRPNGIALTWNITKINPKCAPVESYHLFLCHENSN---NKLIWKKIGEI 632
Query: 86 EALPLPMACTLTQFTAGHTYHFLVRAIDVYKRYSAFSNPGTI 127
+ALPLPMACTL+QF A + Y+F V++ D++ RY F + +I
Sbjct: 633 KALPLPMACTLSQFLASNRYYFTVQSKDIFGRYGPFCDIKSI 674
>sp|Q3UL97|MCAF2_MOUSE Activating transcription factor 7-interacting protein 2 OS=Mus
musculus GN=Atf7ip2 PE=2 SV=1
Length = 452
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 40/102 (39%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 27 PAAPKLRVQLADAGKGIQLTWSLDTTS-DMAAIESYQLYAYQENKNVPVNSSLWKNIGKL 85
P P+L+V+ I LTW++ + + A +ESY L+ Y EN + WK I ++
Sbjct: 347 PQKPELKVKWVLRPTSIALTWNIPKVNPNCAPVESYHLFLYYENSD----HLTWKKIAEI 402
Query: 86 EALPLPMACTLTQFTAGHTYHFLVRAIDVYKRYSAFSNPGTI 127
+ALPLPMACTL+Q A Y+F V++ D++ RY F N +I
Sbjct: 403 KALPLPMACTLSQNLASTKYYFAVQSKDIFGRYGPFCNIKSI 444
>sp|O15197|EPHB6_HUMAN Ephrin type-B receptor 6 OS=Homo sapiens GN=EPHB6 PE=1 SV=4
Length = 1021
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Query: 7 APVPPTPSVSNVVGAMYEMVPAAPKLRVQLADAGKGIQLTWSLDTTSDMAAIESYQLYAY 66
+P PP + NV + VP+A + Q++ A I ++W ++ I YQL Y
Sbjct: 470 SPDPPQAAAINV--STSHEVPSAVPVVHQVSRASNSITVSWPQPDQTN-GNILDYQLRYY 526
Query: 67 QENKNVPVNSSLWKNIGKLEALPLPMACTLTQFTAGHTYHFLVRA 111
+ ++ + +L T+TQ + GH Y F VRA
Sbjct: 527 DQAEDESHSFTLTSETN---------TATVTQLSPGHIYGFQVRA 562
>sp|Q8BZ52|FSD2_MOUSE Fibronectin type III and SPRY domain-containing protein 2 OS=Mus
musculus GN=Fsd2 PE=2 SV=2
Length = 692
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 27/119 (22%), Positives = 55/119 (46%), Gaps = 15/119 (12%)
Query: 11 PTPSVSNVVGAMYEMVPAAPKLRVQ-LADAGKGIQLTWSLDTTSDMAAIESYQLYAYQEN 69
P+P + A+Y P+ P ++ + + + + + W + ++ ++SY + Q
Sbjct: 399 PSPCSEH---AVYMTAPSPPSIKTEAIRSCEEAVLICWE---SGNLNPVDSYTVELIQ-- 450
Query: 70 KNVPVNSSLWKNIGKLEALPLPMACTLTQFTAGHTYHFLVRAIDVYKRYSAFSNPGTIH 128
P S + +++ + +P +L Q H+Y VRA++V SA S P T+H
Sbjct: 451 AETPEASGVTESV-----VGIPTCESLIQLQPRHSYTIYVRALNV-GGTSARSEPATVH 503
>sp|P0C0K6|EPHB6_PANTR Ephrin type-B receptor 6 OS=Pan troglodytes GN=EPHB6 PE=3 SV=4
Length = 1020
Score = 33.1 bits (74), Expect = 0.50, Method: Composition-based stats.
Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Query: 7 APVPPTPSVSNVVGAMYEMVPAAPKLRVQLADAGKGIQLTWSLDTTSDMAAIESYQLYAY 66
+P PP + NV + VP+A + Q++ A I ++W ++ I YQL Y
Sbjct: 469 SPDPPQAAAINV--STSHEVPSAVPVVHQVSRASNSITVSWPQPDQTN-GNILDYQLRYY 525
Query: 67 QENKNVPVNSSLWKNIGKLEALPLPMACTLTQFTAGHTYHFLVRA 111
+ ++ + +L T+TQ + GH Y F VRA
Sbjct: 526 DQVEDESHSFTLTSETN---------TATVTQLSPGHIYGFQVRA 561
>sp|O08644|EPHB6_MOUSE Ephrin type-B receptor 6 OS=Mus musculus GN=Ephb6 PE=2 SV=4
Length = 1014
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Query: 7 APVPPTPSVSNVVGAMYEMVPAAPKLRVQLADAGKGIQLTWSLDTTSDMAAIESYQLYAY 66
+P PP + NV + VP+A + Q++ A I ++W ++ I YQL Y
Sbjct: 463 SPDPPQAAAINV--STSHEVPSAVPVMHQVSRAANSITVSWPQPEQTN-GNILDYQLRYY 519
Query: 67 QENKNVPVNSSLWKNIGKLEALPLPMACTLTQFTAGHTYHFLVRA 111
+ ++ + ++ T+T+ + GH Y F VRA
Sbjct: 520 DQAEDESHSFTMTSETN---------TATVTRLSPGHIYGFQVRA 555
>sp|Q6FS70|PAN2_CANGA PAB-dependent poly(A)-specific ribonuclease subunit PAN2 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAN2 PE=3 SV=1
Length = 1093
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 7/131 (5%)
Query: 8 PVPPT-PSVSNVVGAMYEMVPAAPKLRVQLADAGKGIQLTWSLDTTSDMAAIESYQLYAY 66
PV PT +++ GA + A P LR Q A+ G GI+ + +ES +++
Sbjct: 264 PVLPTIVMIASSSGAFDFVDMANPSLRTQFANPGNGIKCIRLSSNGDHLGVLESNDMFST 323
Query: 67 QENKNVPVNSSLWKNIGKLEALP-LPMACTLTQFTAGHTYHFLVRAIDV-YKRYSAFSNP 124
+ N VN + N+ +L P P L + Y++ + + + Y + S
Sbjct: 324 WKRPNSSVN---FTNMPELLTYPSYPNDGPLANISI-DDYNYPLSTVGMPYYQEKLLSTW 379
Query: 125 GTIHLRTPATV 135
T+ R+P TV
Sbjct: 380 STVIFRSPGTV 390
>sp|P0C0K7|EPHB6_RAT Ephrin type-B receptor 6 OS=Rattus norvegicus GN=Ephb6 PE=2 SV=3
Length = 1013
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 12/105 (11%)
Query: 7 APVPPTPSVSNVVGAMYEMVPAAPKLRVQLADAGKGIQLTWSLDTTSDMAAIESYQLYAY 66
+P PP + NV + VP+A + Q++ A I ++W ++ I YQL Y
Sbjct: 462 SPDPPQAAAINV--STSHEVPSAVPVMHQVSRAANSITVSWPQPEQTN-GNILDYQLRYY 518
Query: 67 QENKNVPVNSSLWKNIGKLEALPLPMACTLTQFTAGHTYHFLVRA 111
+ ++ + ++ T+T+ + GH Y F VRA
Sbjct: 519 DQAEDESHSFTMTSETN---------TATVTRLSPGHIYGFQVRA 554
>sp|P50400|GUND_CELFI Endoglucanase D OS=Cellulomonas fimi GN=cenD PE=3 SV=1
Length = 747
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 16/82 (19%)
Query: 43 IQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGKLEALPLPMACTLTQFTAG 102
+ LTW+ T + + + Y++Y L A P + T+T +A
Sbjct: 566 VPLTWTASTDTGGSGVTGYEVYRGS----------------TLVARPTGTSHTVTGLSAA 609
Query: 103 HTYHFLVRAIDVYKRYSAFSNP 124
Y F VRA+D SA S P
Sbjct: 610 TAYTFTVRAVDAAGNVSAASAP 631
>sp|B1JQE8|RLMM_YERPY Ribosomal RNA large subunit methyltransferase M OS=Yersinia
pseudotuberculosis serotype O:3 (strain YPIII) GN=rlmM
PE=3 SV=1
Length = 368
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 9 VPPTPSVSNVVGAMYEMVPAAPKLRVQLADAGKGIQLTWSLD--TTSDMAAIESYQLYAY 66
+PP VS +VG + ++ A +LRV++AD + +L T +A+ ++ +
Sbjct: 81 LPPEDRVSPIVGMLVGVIEKAGELRVEVADTNESKELLKFCRKLTVPLRSALREQKILSA 140
Query: 67 QENKNVPV 74
+EN + PV
Sbjct: 141 RENAHRPV 148
>sp|Q667H7|RLMM_YERPS Ribosomal RNA large subunit methyltransferase M OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=rlmM
PE=3 SV=1
Length = 368
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 9 VPPTPSVSNVVGAMYEMVPAAPKLRVQLADAGKGIQLTWSLD--TTSDMAAIESYQLYAY 66
+PP VS +VG + ++ A +LRV++AD + +L T +A+ ++ +
Sbjct: 81 LPPEDRVSPIVGMLVGVIEKAGELRVEVADTNESKELLKFCRKLTVPLRSALREQKILSA 140
Query: 67 QENKNVPV 74
+EN + PV
Sbjct: 141 RENAHRPV 148
>sp|A4TLA5|RLMM_YERPP Ribosomal RNA large subunit methyltransferase M OS=Yersinia pestis
(strain Pestoides F) GN=rlmM PE=3 SV=1
Length = 368
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 9 VPPTPSVSNVVGAMYEMVPAAPKLRVQLADAGKGIQLTWSLD--TTSDMAAIESYQLYAY 66
+PP VS +VG + ++ A +LRV++AD + +L T +A+ ++ +
Sbjct: 81 LPPEDRVSPIVGMLVGVIEKAGELRVEVADTNESKELLKFCRKLTVPLRSALREQKILSA 140
Query: 67 QENKNVPV 74
+EN + PV
Sbjct: 141 RENAHRPV 148
>sp|Q1CFD2|RLMM_YERPN Ribosomal RNA large subunit methyltransferase M OS=Yersinia pestis
bv. Antiqua (strain Nepal516) GN=rlmM PE=3 SV=1
Length = 368
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 9 VPPTPSVSNVVGAMYEMVPAAPKLRVQLADAGKGIQLTWSLD--TTSDMAAIESYQLYAY 66
+PP VS +VG + ++ A +LRV++AD + +L T +A+ ++ +
Sbjct: 81 LPPEDRVSPIVGMLVGVIEKAGELRVEVADTNESKELLKFCRKLTVPLRSALREQKILSA 140
Query: 67 QENKNVPV 74
+EN + PV
Sbjct: 141 RENAHRPV 148
>sp|Q8ZH78|RLMM_YERPE Ribosomal RNA large subunit methyltransferase M OS=Yersinia pestis
GN=rlmM PE=3 SV=1
Length = 368
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 9 VPPTPSVSNVVGAMYEMVPAAPKLRVQLADAGKGIQLTWSLD--TTSDMAAIESYQLYAY 66
+PP VS +VG + ++ A +LRV++AD + +L T +A+ ++ +
Sbjct: 81 LPPEDRVSPIVGMLVGVIEKAGELRVEVADTNESKELLKFCRKLTVPLRSALREQKILSA 140
Query: 67 QENKNVPV 74
+EN + PV
Sbjct: 141 RENAHRPV 148
>sp|B2JZ47|RLMM_YERPB Ribosomal RNA large subunit methyltransferase M OS=Yersinia
pseudotuberculosis serotype IB (strain PB1/+) GN=rlmM
PE=3 SV=1
Length = 368
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 9 VPPTPSVSNVVGAMYEMVPAAPKLRVQLADAGKGIQLTWSLD--TTSDMAAIESYQLYAY 66
+PP VS +VG + ++ A +LRV++AD + +L T +A+ ++ +
Sbjct: 81 LPPEDRVSPIVGMLVGVIEKAGELRVEVADTNESKELLKFCRKLTVPLRSALREQKILSA 140
Query: 67 QENKNVPV 74
+EN + PV
Sbjct: 141 RENAHRPV 148
>sp|Q1CAQ2|RLMM_YERPA Ribosomal RNA large subunit methyltransferase M OS=Yersinia pestis
bv. Antiqua (strain Antiqua) GN=rlmM PE=3 SV=1
Length = 368
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 9 VPPTPSVSNVVGAMYEMVPAAPKLRVQLADAGKGIQLTWSLD--TTSDMAAIESYQLYAY 66
+PP VS +VG + ++ A +LRV++AD + +L T +A+ ++ +
Sbjct: 81 LPPEDRVSPIVGMLVGVIEKAGELRVEVADTNESKELLKFCRKLTVPLRSALREQKILSA 140
Query: 67 QENKNVPV 74
+EN + PV
Sbjct: 141 RENAHRPV 148
>sp|A7FFF7|RLMM_YERP3 Ribosomal RNA large subunit methyltransferase M OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758)
GN=rlmM PE=3 SV=1
Length = 368
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 9 VPPTPSVSNVVGAMYEMVPAAPKLRVQLADAGKGIQLTWSLD--TTSDMAAIESYQLYAY 66
+PP VS +VG + ++ A +LRV++AD + +L T +A+ ++ +
Sbjct: 81 LPPEDRVSPIVGMLVGVIEKAGELRVEVADTNESKELLKFCRKLTVPLRSALREQKILSA 140
Query: 67 QENKNVPV 74
+EN + PV
Sbjct: 141 RENAHRPV 148
>sp|A9R2P6|RLMM_YERPG Ribosomal RNA large subunit methyltransferase M OS=Yersinia pestis
bv. Antiqua (strain Angola) GN=rlmM PE=3 SV=1
Length = 368
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 9 VPPTPSVSNVVGAMYEMVPAAPKLRVQLADAGKGIQLTWSLD--TTSDMAAIESYQLYAY 66
+PP VS +VG + ++ A +LRV++AD + +L T +A+ ++ +
Sbjct: 81 LPPEDRVSPIVGMLVGVIEKAGELRVEVADTNESKELLKFCRKLTVPLRSALREQKILSA 140
Query: 67 QENKNVPV 74
+EN + PV
Sbjct: 141 RENAHRPV 148
>sp|A1JPA5|RLMM_YERE8 Ribosomal RNA large subunit methyltransferase M OS=Yersinia
enterocolitica serotype O:8 / biotype 1B (strain 8081)
GN=rlmM PE=3 SV=1
Length = 368
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 9 VPPTPSVSNVVGAMYEMVPAAPKLRVQLADAGKGIQL 45
+PP VS +VG + +V A +LRV++AD + +L
Sbjct: 81 LPPEDRVSPIVGMLTGVVEKAGELRVEVADTNESKEL 117
>sp|P52178|TPT2_BRAOB Triose phosphate/phosphate translocator, non-green plastid,
chloroplastic OS=Brassica oleracea var. botrytis
GN=NGTPT PE=2 SV=1
Length = 402
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 85 LEALPLPMACTLTQFTAGHTYHFLVRAIDVYKR 117
L+AL PM TL QF G + A+++YKR
Sbjct: 124 LKALHAPMTVTLVQFAVGSVLITFMWALNLYKR 156
>sp|Q88VP8|3MGH_LACPL Putative 3-methyladenine DNA glycosylase OS=Lactobacillus plantarum
(strain ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=lp_1991
PE=3 SV=1
Length = 209
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 31 KLRVQLADAGKGIQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGKLEALPL 90
+LR+Q + G+ W +T + + A ++ +AYQ N P N +LW++ G + +
Sbjct: 24 QLRLQTSS---GVLTAWITETEAYLGARDA-GAHAYQ-NHQTPRNHALWQSAGTIYIYQM 78
Query: 91 PMACTLTQFT--AGHTYHFLVRAID 113
C L T AG L+R I+
Sbjct: 79 RAWCLLNIVTQAAGTPECVLIRGIE 103
>sp|Q7N8R4|RLMM_PHOLL Ribosomal RNA large subunit methyltransferase M OS=Photorhabdus
luminescens subsp. laumondii (strain TT01) GN=rlmM PE=3
SV=1
Length = 366
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 9 VPPTPSVSNVVGAMYEMVPAAPKLRVQLADAGKGIQLTWSLD--TTSDMAAIESYQLYAY 66
+PP +S +VG ++ ++ A +LRV++ D + +L T A+ ++
Sbjct: 80 LPPEDRISPIVGMLHGVIERAGELRVEVPDTNESKELLKFCRKFTVPLRNAMRQEKILLI 139
Query: 67 QENKNVPV 74
+EN N PV
Sbjct: 140 RENVNRPV 147
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.130 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,516,849
Number of Sequences: 539616
Number of extensions: 2000965
Number of successful extensions: 5173
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 5142
Number of HSP's gapped (non-prelim): 36
length of query: 138
length of database: 191,569,459
effective HSP length: 103
effective length of query: 35
effective length of database: 135,989,011
effective search space: 4759615385
effective search space used: 4759615385
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)