Query psy816
Match_columns 138
No_of_seqs 56 out of 58
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 20:06:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy816.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/816hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00041 fn3: Fibronectin type 98.8 1.1E-07 2.4E-12 61.6 9.3 82 30-122 4-85 (85)
2 cd00063 FN3 Fibronectin type 3 97.7 0.0014 3E-08 40.6 10.2 82 32-124 7-88 (93)
3 smart00060 FN3 Fibronectin typ 97.5 0.0047 1E-07 37.0 10.0 76 31-116 6-81 (83)
4 PF09294 Interfer-bind: Interf 97.2 0.0024 5.2E-08 44.3 7.0 88 30-129 6-105 (106)
5 KOG3513|consensus 95.9 0.056 1.2E-06 53.3 9.5 82 38-128 831-912 (1051)
6 KOG0196|consensus 95.3 0.23 5.1E-06 48.5 11.3 98 23-132 440-537 (996)
7 PF01108 Tissue_fac: Tissue fa 91.4 3.6 7.9E-05 29.0 9.3 76 25-114 21-101 (107)
8 KOG4802|consensus 90.0 0.66 1.4E-05 42.6 5.4 101 22-127 140-243 (516)
9 TIGR00868 hCaCC calcium-activa 89.8 2.5 5.3E-05 41.3 9.4 95 24-124 753-861 (863)
10 PF07495 Y_Y_Y: Y_Y_Y domain; 85.0 5.5 0.00012 25.1 6.2 50 63-122 9-58 (66)
11 PF10342 GPI-anchored: Ser-Thr 78.9 16 0.00035 24.3 8.2 66 38-110 10-77 (93)
12 KOG4221|consensus 71.0 11 0.00023 38.8 6.1 71 38-118 439-509 (1381)
13 KOG3513|consensus 64.1 41 0.0009 34.0 8.6 82 31-120 620-702 (1051)
14 PF04300 FBA: F-box associated 51.7 1.1E+02 0.0024 24.4 7.7 37 76-122 135-172 (184)
15 PF10179 DUF2369: Uncharacteri 48.9 20 0.00044 31.1 3.4 24 93-116 16-39 (300)
16 PF10718 Ycf34: Hypothetical c 48.1 34 0.00075 24.4 3.9 33 25-57 34-68 (77)
17 PF13368 Toprim_C_rpt: Topoiso 43.1 9.4 0.0002 25.2 0.3 14 114-127 10-23 (61)
18 PF08750 CNP1: CNP1-like famil 40.1 1.6E+02 0.0035 22.7 6.8 32 54-86 73-107 (139)
19 PF11344 DUF3146: Protein of u 38.3 24 0.00052 25.5 1.8 15 98-112 66-80 (80)
20 COG2107 Predicted periplasmic 28.4 10 0.00022 32.7 -1.7 35 55-96 144-179 (272)
21 KOG1378|consensus 27.9 3.7E+02 0.008 24.9 8.0 19 93-111 110-128 (452)
22 KOG4221|consensus 26.7 2.6E+02 0.0056 29.4 7.3 79 25-117 718-800 (1381)
23 COG4733 Phage-related protein, 26.2 49 0.0011 33.1 2.3 29 97-125 762-790 (952)
24 PF11412 DsbC: Disulphide bond 25.7 1.4E+02 0.003 20.8 4.0 27 32-66 11-37 (117)
25 COG1881 Phospholipid-binding p 25.2 52 0.0011 26.2 2.0 28 79-114 112-139 (174)
26 PF01404 Ephrin_lbd: Ephrin re 24.3 1.1E+02 0.0024 24.5 3.7 48 43-90 69-127 (178)
27 PF13754 Big_3_4: Bacterial Ig 24.0 2E+02 0.0043 18.2 4.5 23 101-123 22-44 (54)
28 smart00112 CA Cadherin repeats 23.9 1.8E+02 0.0038 18.5 4.0 19 99-117 41-59 (79)
29 PF09423 PhoD: PhoD-like phosp 22.7 1.1E+02 0.0024 26.7 3.7 44 79-122 48-96 (453)
30 PF03875 Statherin: Statherin; 22.3 39 0.00084 21.5 0.5 10 115-124 16-25 (42)
31 PF00812 Ephrin: Ephrin; Inte 21.3 54 0.0012 25.5 1.3 24 89-115 98-121 (145)
32 PLN02533 probable purple acid 20.8 3.1E+02 0.0067 24.3 6.1 18 94-111 105-122 (427)
No 1
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=98.77 E-value=1.1e-07 Score=61.57 Aligned_cols=82 Identities=22% Similarity=0.353 Sum_probs=65.3
Q ss_pred ceEEEEEeecCCcEEEEEeCCCCCcccceeeEEEEEEEeCCCCCCCCccceeeceecccCceeeEEeeecCCCcEEEEEE
Q psy816 30 PKLRVQLADAGKGIQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGKLEALPLPMACTLTQFTAGHTYHFLV 109 (138)
Q Consensus 30 P~L~l~i~~~~~gIvLsWn~~~~~~~A~v~sYeLyayqe~~~~~~~~~~WKKig~VkAlPLPMaCtLtqf~~g~~YyFaV 109 (138)
..|++. ....+.|.|+|+.+. .....+.+|+|+...++... .|..+ .+.+. -+.+++++..++.+|.|.|
T Consensus 4 ~~l~v~-~~~~~sv~v~W~~~~-~~~~~~~~y~v~~~~~~~~~-----~~~~~-~~~~~--~~~~~i~~L~p~t~Y~~~v 73 (85)
T PF00041_consen 4 ENLSVS-NISPTSVTVSWKPPS-SGNGPITGYRVEYRSVNSTS-----DWQEV-TVPGN--ETSYTITGLQPGTTYEFRV 73 (85)
T ss_dssp EEEEEE-EECSSEEEEEEEESS-STSSSESEEEEEEEETTSSS-----EEEEE-EEETT--SSEEEEESCCTTSEEEEEE
T ss_pred cCeEEE-ECCCCEEEEEEECCC-CCCCCeeEEEEEEEecccce-----eeeee-eeeee--eeeeeeccCCCCCEEEEEE
Confidence 366765 247999999999998 77788999999998777542 45555 33433 4489999999999999999
Q ss_pred EEeeecCccCCCC
Q psy816 110 RAIDVYKRYSAFS 122 (138)
Q Consensus 110 RavDi~~R~GpFs 122 (138)
+|++-.| .|++|
T Consensus 74 ~a~~~~g-~g~~S 85 (85)
T PF00041_consen 74 RAVNSDG-EGPPS 85 (85)
T ss_dssp EEEETTE-EEEEE
T ss_pred EEEeCCc-CcCCC
Confidence 9999999 88875
No 2
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=97.69 E-value=0.0014 Score=40.62 Aligned_cols=82 Identities=26% Similarity=0.352 Sum_probs=57.6
Q ss_pred EEEEEeecCCcEEEEEeCCCCCcccceeeEEEEEEEeCCCCCCCCccceeeceecccCceeeEEeeecCCCcEEEEEEEE
Q psy816 32 LRVQLADAGKGIQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGKLEALPLPMACTLTQFTAGHTYHFLVRA 111 (138)
Q Consensus 32 L~l~i~~~~~gIvLsWn~~~~~~~A~v~sYeLyayqe~~~~~~~~~~WKKig~VkAlPLPMaCtLtqf~~g~~YyFaVRa 111 (138)
+++.. ..++.|.|+|+-..... ..+.+|+|+..... ...|..+.... .---.+++.+...+.+|.|-|++
T Consensus 7 ~~~~~-~~~~~~~v~W~~~~~~~-~~~~~y~v~~~~~~------~~~~~~~~~~~--~~~~~~~i~~l~p~~~Y~~~v~a 76 (93)
T cd00063 7 LRVTD-VTSTSVTLSWTPPEDDG-GPITGYVVEYREKG------SGDWKEVEVTP--GSETSYTLTGLKPGTEYEFRVRA 76 (93)
T ss_pred cEEEE-ecCCEEEEEECCCCCCC-CcceeEEEEEeeCC------CCCCEEeeccC--CcccEEEEccccCCCEEEEEEEE
Confidence 55542 33699999999876333 56778999877543 23677774321 23357888999999999999999
Q ss_pred eeecCccCCCCCc
Q psy816 112 IDVYKRYSAFSNP 124 (138)
Q Consensus 112 vDi~~R~GpFs~~ 124 (138)
.+--+ .|..+..
T Consensus 77 ~~~~~-~~~~s~~ 88 (93)
T cd00063 77 VNGGG-ESPPSES 88 (93)
T ss_pred ECCCc-cCCCccc
Confidence 99844 4666663
No 3
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=97.46 E-value=0.0047 Score=36.98 Aligned_cols=76 Identities=25% Similarity=0.406 Sum_probs=51.7
Q ss_pred eEEEEEeecCCcEEEEEeCCCCCcccceeeEEEEEEEeCCCCCCCCccceeeceecccCceeeEEeeecCCCcEEEEEEE
Q psy816 31 KLRVQLADAGKGIQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGKLEALPLPMACTLTQFTAGHTYHFLVR 110 (138)
Q Consensus 31 ~L~l~i~~~~~gIvLsWn~~~~~~~A~v~sYeLyayqe~~~~~~~~~~WKKig~VkAlPLPMaCtLtqf~~g~~YyFaVR 110 (138)
.+++.- ..++.+.|+|+-...... .+|.++........ ...|..+..... --.|++.....+..|.|.||
T Consensus 6 ~~~~~~-~~~~~~~v~W~~~~~~~~---~~y~~~~~~~~~~~---~~~~~~~~~~~~---~~~~~i~~L~~~~~Y~v~v~ 75 (83)
T smart00060 6 NLRVTD-VTSTSVTLSWEPPPDDGI---TGYIVGYRVEYREE---GSSWKEVNVTPS---STSYTLTGLKPGTEYEFRVR 75 (83)
T ss_pred cEEEEE-EeCCEEEEEECCCCCCCC---CccEEEEEEEEecC---CCccEEEEecCC---ccEEEEeCcCCCCEEEEEEE
Confidence 355541 345689999996553332 78888766544321 145776644333 46799999999999999999
Q ss_pred EeeecC
Q psy816 111 AIDVYK 116 (138)
Q Consensus 111 avDi~~ 116 (138)
|++..|
T Consensus 76 a~~~~g 81 (83)
T smart00060 76 AVNGAG 81 (83)
T ss_pred EEcccC
Confidence 998744
No 4
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=97.16 E-value=0.0024 Score=44.31 Aligned_cols=88 Identities=23% Similarity=0.284 Sum_probs=60.2
Q ss_pred ceEEEEEeecCCcEEEEEeCCC--------CCcccce---eeEEEEEEEeCCCCCCCCccceeeceecccCceeeEEeee
Q psy816 30 PKLRVQLADAGKGIQLTWSLDT--------TSDMAAI---ESYQLYAYQENKNVPVNSSLWKNIGKLEALPLPMACTLTQ 98 (138)
Q Consensus 30 P~L~l~i~~~~~gIvLsWn~~~--------~~~~A~v---~sYeLyayqe~~~~~~~~~~WKKig~VkAlPLPMaCtLtq 98 (138)
|+++|+ ..++.|.+++..+. ...+.++ -.|.|+.....+. ...+...+.- ..-+|.+
T Consensus 6 P~v~v~--~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~----~~~~~~~~~~------~~~~l~~ 73 (106)
T PF09294_consen 6 PSVNVS--SCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSN----EKKKEIETKN------SSVTLSD 73 (106)
T ss_dssp SEEEEE--EETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTS----CEEEEEESSS------EEEEEES
T ss_pred CEEEEE--ECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCc----cceEEEeecC------CEEEEeC
Confidence 577876 77999999988664 1122222 4599997766543 1233332221 2357999
Q ss_pred cCCCcEEEEEEEE-eeecCccCCCCCceEEee
Q psy816 99 FTAGHTYHFLVRA-IDVYKRYSAFSNPGTIHL 129 (138)
Q Consensus 99 f~~g~~YyFaVRa-vDi~~R~GpFs~~~ti~l 129 (138)
...|.+|+|.|++ ...+.|.|.||.+++++-
T Consensus 74 L~p~t~YCv~V~~~~~~~~~~s~~S~~~C~~t 105 (106)
T PF09294_consen 74 LKPGTNYCVSVQAFSPSQNKNSQPSEPQCITT 105 (106)
T ss_dssp --TTSEEEEEEEEEECSSTEEEEEBSEEEEE-
T ss_pred CCCCCCEEEEEEEEeccCCCcCCCCCCEeEeC
Confidence 9999999999999 899999999999999863
No 5
>KOG3513|consensus
Probab=95.86 E-value=0.056 Score=53.32 Aligned_cols=82 Identities=15% Similarity=0.252 Sum_probs=59.0
Q ss_pred ecCCcEEEEEeCCCCCcccceeeEEEEEEEeCCCCCCCCccceeeceecccCceeeEEeeecCCCcEEEEEEEEeeecCc
Q psy816 38 DAGKGIQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGKLEALPLPMACTLTQFTAGHTYHFLVRAIDVYKR 117 (138)
Q Consensus 38 ~~~~gIvLsWn~~~~~~~A~v~sYeLyayqe~~~~~~~~~~WKKig~VkAlPLPMaCtLtqf~~g~~YyFaVRavDi~~R 117 (138)
-+-+-|.|+|+-....+ -.+.+|+|.-+.-++.. +...+++--+-=-.-.|+...++..|+|.|||-+-+|
T Consensus 831 ~s~s~~~v~W~~~~~~n-G~l~gY~v~Y~~~~~~~-------~~~~~~~i~~~~~~~~ltgL~~~T~Y~~~vrA~nsaG- 901 (1051)
T KOG3513|consen 831 LSSSEVNLSWKPPLWDN-GKLTGYEVKYWKINEKE-------GSLSRVQIAGNRTSWRLTGLEPNTKYRFYVRAYTSAG- 901 (1051)
T ss_pred ccCceEEEEecCcCccC-CccceeEEEEEEcCCCc-------ccccceeecCCcceEeeeCCCCCceEEEEEEEecCCC-
Confidence 45788999998776444 78899999877544331 1111122123333456889999999999999999999
Q ss_pred cCCCCCceEEe
Q psy816 118 YSAFSNPGTIH 128 (138)
Q Consensus 118 ~GpFs~~~ti~ 128 (138)
.||.|...+++
T Consensus 902 ~Gp~s~~~~~t 912 (1051)
T KOG3513|consen 902 GGPASSEENVT 912 (1051)
T ss_pred CCCCccceecc
Confidence 99999887774
No 6
>KOG0196|consensus
Probab=95.30 E-value=0.23 Score=48.53 Aligned_cols=98 Identities=20% Similarity=0.307 Sum_probs=69.5
Q ss_pred ccCCCCCceEEEEEeecCCcEEEEEeCCCCCcccceeeEEEEEEEeCCCCCCCCccceeeceecccCceeeEEeeecCCC
Q psy816 23 YEMVPAAPKLRVQLADAGKGIQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGKLEALPLPMACTLTQFTAG 102 (138)
Q Consensus 23 wk~~P~~P~L~l~i~~~~~gIvLsWn~~~~~~~A~v~sYeLyayqe~~~~~~~~~~WKKig~VkAlPLPMaCtLtqf~~g 102 (138)
-..|++-+.|++. ++..++|.|+|..+..++.. |--|||=.|....+.. +.+. .|... -.-|++..++|
T Consensus 440 qa~ps~V~~~r~~-~~~~~sitlsW~~p~~png~-ildYEvky~ek~~~e~-~~~~-~~t~~-------~~~ti~gL~p~ 508 (996)
T KOG0196|consen 440 QAAPSPVSVLRQV-SRTSDSITLSWSEPDQPNGV-ILDYEVKYYEKDEDER-SYST-LKTKT-------TTATITGLKPG 508 (996)
T ss_pred ccCCCccceEEEe-eeccCceEEecCCCCCCCCc-ceeEEEEEeecccccc-ceeE-Eeccc-------ceEEeeccCCC
Confidence 4566777778775 36699999999999977666 8899998885332221 2221 11111 14589999999
Q ss_pred cEEEEEEEEeeecCccCCCCCceEEeeeCC
Q psy816 103 HTYHFLVRAIDVYKRYSAFSNPGTIHLRTP 132 (138)
Q Consensus 103 ~~YyFaVRavDi~~R~GpFs~~~ti~l~~~ 132 (138)
..|=|-|||.+.-| ||+||.+-...-.++
T Consensus 509 t~YvfqVRarT~aG-~G~~S~~~~fqT~~~ 537 (996)
T KOG0196|consen 509 TVYVFQVRARTAAG-YGPYSGKHEFQTLPS 537 (996)
T ss_pred cEEEEEEEEecccC-CCCCCCceeeeecCc
Confidence 99999999999986 699988766554444
No 7
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=91.36 E-value=3.6 Score=29.00 Aligned_cols=76 Identities=25% Similarity=0.337 Sum_probs=51.2
Q ss_pred CCCCCceEEEEEeecCCcEEEEEeCCCCCcccceeeEEEEEEEeCCCCCCCCccceeec---eecccCceeeEEeeecC-
Q psy816 25 MVPAAPKLRVQLADAGKGIQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIG---KLEALPLPMACTLTQFT- 100 (138)
Q Consensus 25 ~~P~~P~L~l~i~~~~~gIvLsWn~~~~~~~A~v~sYeLyayqe~~~~~~~~~~WKKig---~VkAlPLPMaCtLtqf~- 100 (138)
.+|.+-.+++. -..-..+|+|+-..+.. .=..|.+-.-.. ..+.|+.+. .|.. ..|-||+..
T Consensus 21 ~lp~P~nv~~~--s~nf~~iL~W~~~~~~~--~~~~ytVq~~~~------~~~~W~~v~~C~~i~~----~~Cdlt~~~~ 86 (107)
T PF01108_consen 21 SLPAPQNVTVD--SVNFKHILRWDPGPGSP--PNVTYTVQYKKY------GSSSWKDVPGCQNITE----TSCDLTDETS 86 (107)
T ss_dssp SGSSCEEEEEE--EETTEEEEEEEESTTSS--STEEEEEEEEES------STSCEEEECCEEEESS----SEEECTTCCT
T ss_pred cCCCCCeeEEE--EECCceEEEeCCCCCCC--CCeEEEEEEEec------CCcceeeccceecccc----cceeCcchhh
Confidence 34444577776 56788999999844222 224565544422 345799983 3544 689999966
Q ss_pred -CCcEEEEEEEEeee
Q psy816 101 -AGHTYHFLVRAIDV 114 (138)
Q Consensus 101 -~g~~YyFaVRavDi 114 (138)
....|++-|||.+-
T Consensus 87 ~~~~~Y~~rV~A~~~ 101 (107)
T PF01108_consen 87 DPSESYYARVRAEVG 101 (107)
T ss_dssp TTTSEEEEEEEEEET
T ss_pred cCcCCEEEEEEEEeC
Confidence 68999999999863
No 8
>KOG4802|consensus
Probab=90.02 E-value=0.66 Score=42.58 Aligned_cols=101 Identities=16% Similarity=0.349 Sum_probs=61.9
Q ss_pred cccCCCCCceEEEEEeecCCc-EEEEEeCCCCC--cccceeeEEEEEEEeCCCCCCCCccceeeceecccCceeeEEeee
Q psy816 22 MYEMVPAAPKLRVQLADAGKG-IQLTWSLDTTS--DMAAIESYQLYAYQENKNVPVNSSLWKNIGKLEALPLPMACTLTQ 98 (138)
Q Consensus 22 ~wk~~P~~P~L~l~i~~~~~g-IvLsWn~~~~~--~~A~v~sYeLyayqe~~~~~~~~~~WKKig~VkAlPLPMaCtLtq 98 (138)
.+++++++|.-++.--+...| +.+.|.+..+. .|-.++--+=.-+.+..... ....|+++ ++.+-+ -+-.+++
T Consensus 140 l~k~~~l~Pr~k~~y~r~~~g~~av~w~~~~~~~v~~~~~~vr~~w~~g~hase~-~~thwQtv-~~t~~e--~~~~~t~ 215 (516)
T KOG4802|consen 140 LYKNTQLPPRPKILYFRRSRGSHAVDWKIESSLLVYYVHVEVRSHWGRGFHASEL-GPTHWQTV-EKTMEE--NTYIFTD 215 (516)
T ss_pred ccccCCCCCcchhhhhhhccCceeeeeeeccccceeeeehhhhhhhccccccccc-ccccceee-eecCCC--ceeeeee
Confidence 356555555444421134455 99999988733 22232211112233333322 34579988 333332 3888999
Q ss_pred cCCCcEEEEEEEEeeecCccCCCCCceEE
Q psy816 99 FTAGHTYHFLVRAIDVYKRYSAFSNPGTI 127 (138)
Q Consensus 99 f~~g~~YyFaVRavDi~~R~GpFs~~~ti 127 (138)
+..|.-|-|-|.||..||=+| ||.|-.=
T Consensus 216 ~rPgRwyefrvaavn~~G~rG-Fs~PSkp 243 (516)
T KOG4802|consen 216 MRPGRWYEFRVAAVNAYGFRG-FSEPSKP 243 (516)
T ss_pred cCcceeEEEEEeeeecccccc-cCCCCCC
Confidence 999999999999999999999 6665443
No 9
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=89.83 E-value=2.5 Score=41.34 Aligned_cols=95 Identities=22% Similarity=0.216 Sum_probs=53.4
Q ss_pred cCCCCCc-eEEEEEeecCCcEEEEEeCCCCC-cccceeeEEEEEEEe--------CCCCCCCCcc--ceeeceecccCce
Q psy816 24 EMVPAAP-KLRVQLADAGKGIQLTWSLDTTS-DMAAIESYQLYAYQE--------NKNVPVNSSL--WKNIGKLEALPLP 91 (138)
Q Consensus 24 k~~P~~P-~L~l~i~~~~~gIvLsWn~~~~~-~~A~v~sYeLyayqe--------~~~~~~~~~~--WKKig~VkAlPLP 91 (138)
+.||-+= .|+++ ..+..|+|+|+.+.++ .+-.+..|+|=.-.. +....++++. =|--|-. ==
T Consensus 753 ~~PP~rItDL~~~--~~~~~v~LsWTAPG~d~D~G~a~~y~ir~s~~~~~l~~~f~~a~~vn~~~~~P~~ags~----e~ 826 (863)
T TIGR00868 753 VFPPSKITDLEAG--FQGDNIILTWTAPGDVLDHGRADRYIIRISTSILDLRDDFNDATQVNTTDLIPKEANSK----EV 826 (863)
T ss_pred cCCCccceeeEEe--ecCCEEEEEeeCCCccCCCCccceEEEEecCCHHHHHhhhccccccccCCcCCCCCCce----eE
Confidence 3444432 45544 4566699999998843 466778897755431 1111122211 0000100 11
Q ss_pred eeEEeeecC--CCcEEEEEEEEeeecCccCCCCCc
Q psy816 92 MACTLTQFT--AGHTYHFLVRAIDVYKRYSAFSNP 124 (138)
Q Consensus 92 MaCtLtqf~--~g~~YyFaVRavDi~~R~GpFs~~ 124 (138)
+..+..++. .|..|||||||+|.-+=.|.-|+.
T Consensus 827 ~~f~~~~~~~~~~~~~~~ai~a~d~~~~~s~~sn~ 861 (863)
T TIGR00868 827 FVFKPEGIPIENGTDLFIAVQAIDKANLTSEVSNI 861 (863)
T ss_pred EEEeCCcccccCCeEEEEEEEEEcccccccccccc
Confidence 345566655 666999999999987776665553
No 10
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=84.99 E-value=5.5 Score=25.15 Aligned_cols=50 Identities=22% Similarity=0.346 Sum_probs=34.4
Q ss_pred EEEEEeCCCCCCCCccceeeceecccCceeeEEeeecCCCcEEEEEEEEeeecCccCCCC
Q psy816 63 LYAYQENKNVPVNSSLWKNIGKLEALPLPMACTLTQFTAGHTYHFLVRAIDVYKRYSAFS 122 (138)
Q Consensus 63 Lyayqe~~~~~~~~~~WKKig~VkAlPLPMaCtLtqf~~g~~YyFaVRavDi~~R~GpFs 122 (138)
.|.|+..+.. ..|..+++-.. .+++++..+ .+|-|-|||+|..+.-+.-.
T Consensus 9 ~Y~Y~l~g~d----~~W~~~~~~~~-----~~~~~~L~~-G~Y~l~V~a~~~~~~~~~~~ 58 (66)
T PF07495_consen 9 RYRYRLEGFD----DEWITLGSYSN-----SISYTNLPP-GKYTLEVRAKDNNGKWSSDE 58 (66)
T ss_dssp EEEEEEETTE----SSEEEESSTS------EEEEES--S-EEEEEEEEEEETTS-B-SS-
T ss_pred EEEEEEECCC----CeEEECCCCcE-----EEEEEeCCC-EEEEEEEEEECCCCCcCccc
Confidence 5778655432 46999887654 788999887 78999999999988776543
No 11
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=78.93 E-value=16 Score=24.28 Aligned_cols=66 Identities=21% Similarity=0.398 Sum_probs=47.1
Q ss_pred ecCCcEEEEEeCCCCCcccceeeEEEEEEEeCCCCCCCCccceeec-eecccCceeeEEe-eecCCCcEEEEEEE
Q psy816 38 DAGKGIQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIG-KLEALPLPMACTL-TQFTAGHTYHFLVR 110 (138)
Q Consensus 38 ~~~~gIvLsWn~~~~~~~A~v~sYeLyayqe~~~~~~~~~~WKKig-~VkAlPLPMaCtL-tqf~~g~~YyFaVR 110 (138)
..+..+.|+|+-..... ..|.|+.|..... +...+..|+ .|....--...++ ..+.++..|+|.+.
T Consensus 10 ~~g~~~~I~W~~~~~~~----~~~~I~L~~g~~~---~~~~~~~ia~~v~~~~gs~~~~~p~~l~~~~~Y~i~~~ 77 (93)
T PF10342_consen 10 TAGQPITITWTSDGTDP----GNVTIYLCNGNNT---NLNFVQTIASNVSNSDGSYTWTIPSDLPSGGDYFIQIV 77 (93)
T ss_pred ECCCcEEEEEeCCCCCC----cEEEEEEEcCCCC---CcceeEEEEecccCCCCEEEEEcCCCCCCCCcEEEEEE
Confidence 35788999999876222 8899999987763 345677787 4554445566777 55888888888777
No 12
>KOG4221|consensus
Probab=70.95 E-value=11 Score=38.81 Aligned_cols=71 Identities=21% Similarity=0.294 Sum_probs=54.5
Q ss_pred ecCCcEEEEEeCCCCCcccceeeEEEEEEEeCCCCCCCCccceeeceecccCceeeEEeeecCCCcEEEEEEEEeeecCc
Q psy816 38 DAGKGIQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGKLEALPLPMACTLTQFTAGHTYHFLVRAIDVYKR 117 (138)
Q Consensus 38 ~~~~gIvLsWn~~~~~~~A~v~sYeLyayqe~~~~~~~~~~WKKig~VkAlPLPMaCtLtqf~~g~~YyFaVRavDi~~R 117 (138)
+.-.-|+++|.-+. ...-+|-.|.+|--.|.+ .|.++=.... += |--|+.+|+.+..|.|+|||..-+||
T Consensus 439 ~~srfi~~tw~~p~-~~~g~i~~~~v~~~~~~~-------~rer~~~tss-~g-~~~tv~nl~p~t~Y~~rv~A~n~~g~ 508 (1381)
T KOG4221|consen 439 VSSRFIQLTWRPPA-QISGNISTYTVFYKVEGD-------VRERLQNTSS-PG-IQVTVQNLSPLTMYFFRVRAKNEAGS 508 (1381)
T ss_pred ccceeEEEeecCcc-ccCCCcceEEEEEecCCc-------hhhhheeccC-Cc-eEEEeeecccceeEEEEEeccCcccC
Confidence 44677999999555 666688889998655554 4666633333 23 89999999999999999999999997
Q ss_pred c
Q psy816 118 Y 118 (138)
Q Consensus 118 ~ 118 (138)
.
T Consensus 509 g 509 (1381)
T KOG4221|consen 509 G 509 (1381)
T ss_pred C
Confidence 3
No 13
>KOG3513|consensus
Probab=64.10 E-value=41 Score=33.97 Aligned_cols=82 Identities=18% Similarity=0.287 Sum_probs=53.7
Q ss_pred eEEEEEeecCCcEEEEEeCCCCCcccceeeEEEEEEEeCCCCCCCCccceeeceecccCce-eeEEeeecCCCcEEEEEE
Q psy816 31 KLRVQLADAGKGIQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGKLEALPLP-MACTLTQFTAGHTYHFLV 109 (138)
Q Consensus 31 ~L~l~i~~~~~gIvLsWn~~~~~~~A~v~sYeLyayqe~~~~~~~~~~WKKig~VkAlPLP-MaCtLtqf~~g~~YyFaV 109 (138)
.|++. -..++.+.|+|.-..+.. .+|..|-| |..+. -...|+-+..|-+.-== -+=+.-+...-..|=|-|
T Consensus 620 ~v~~~-~i~~t~~~lsW~~g~dn~-SpI~~Y~i---q~rt~---~~~~W~~v~~vp~~~~~~~sa~vv~L~Pwv~YeFRV 691 (1051)
T KOG3513|consen 620 DVHVD-DISDTTARLSWSPGSDNN-SPIEKYTI---QFRTP---FPGKWKAVTTVPGNITGDESATVVNLSPWVEYEFRV 691 (1051)
T ss_pred ceeEe-eeccceEEEEeecCCCCC-CCceEEeE---EecCC---CCCcceEeeECCCcccCccceeEEccCCCcceEEEE
Confidence 57773 245899999999655332 56888876 33322 34579999866544220 113345566667799999
Q ss_pred EEeeecCccCC
Q psy816 110 RAIDVYKRYSA 120 (138)
Q Consensus 110 RavDi~~R~Gp 120 (138)
+|+..-||==|
T Consensus 692 ~AvN~iG~geP 702 (1051)
T KOG3513|consen 692 VAVNSIGIGEP 702 (1051)
T ss_pred EEEcccccCCC
Confidence 99999998433
No 14
>PF04300 FBA: F-box associated region; InterPro: IPR007397 Proteins containing this domain are associated with F-box domains (IPR001810 from INTERPRO), hence the name FBA. This domain is probably involved in binding other proteins that will be targeted for ubiquitination. Q9UK22 from SWISSPROT is involved in binding to N-glycosylated proteins.; GO: 0030163 protein catabolic process; PDB: 1UMI_A 2RJ2_A 2E33_A 1UMH_A 2E32_A 2E31_A.
Probab=51.66 E-value=1.1e+02 Score=24.39 Aligned_cols=37 Identities=16% Similarity=0.378 Sum_probs=23.9
Q ss_pred CccceeeceecccCceeeEEeeecCCCcEE-EEEEEEeeecCccCCCC
Q psy816 76 SSLWKNIGKLEALPLPMACTLTQFTAGHTY-HFLVRAIDVYKRYSAFS 122 (138)
Q Consensus 76 ~~~WKKig~VkAlPLPMaCtLtqf~~g~~Y-yFaVRavDi~~R~GpFs 122 (138)
...|++| .-++++|-.|.+| +|.-.++|...--|=|-
T Consensus 135 ~~~W~qv----------sh~F~~Yg~GVR~I~f~h~GkD~~fw~G~yG 172 (184)
T PF04300_consen 135 DNPWKQV----------SHTFSNYGPGVRFIRFEHGGKDTQFWAGHYG 172 (184)
T ss_dssp T--EEEE----------EEEE-S--TTEEEEEEEEEEEESS--SSS-S
T ss_pred CCCcEEE----------EEEEeCCCCCCEEEEEEEeeeccccCCcccC
Confidence 4568887 6789999999998 79999999985555553
No 15
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=48.95 E-value=20 Score=31.06 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.7
Q ss_pred eEEeeecCCCcEEEEEEEEeeecC
Q psy816 93 ACTLTQFTAGHTYHFLVRAIDVYK 116 (138)
Q Consensus 93 aCtLtqf~~g~~YyFaVRavDi~~ 116 (138)
.|||...+.|.+|||-|=++|-+.
T Consensus 16 ~~t~~~L~p~t~YyfdVF~vn~~~ 39 (300)
T PF10179_consen 16 NQTLSGLKPDTTYYFDVFVVNQLT 39 (300)
T ss_pred eEEeccCCCCCeEEEEEEEEECCC
Confidence 589999999999999999999854
No 16
>PF10718 Ycf34: Hypothetical chloroplast protein Ycf34; InterPro: IPR019656 This entry represents Ycf34, a protein encoded in algal genomes and additionally found in cyanobacteria. The function is not known. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=48.15 E-value=34 Score=24.43 Aligned_cols=33 Identities=18% Similarity=0.423 Sum_probs=26.5
Q ss_pred CCCCCceEEEEEee-cCCcEEEEEeCCC-CCcccc
Q psy816 25 MVPAAPKLRVQLAD-AGKGIQLTWSLDT-TSDMAA 57 (138)
Q Consensus 25 ~~P~~P~L~l~i~~-~~~gIvLsWn~~~-~~~~A~ 57 (138)
..|..|.+.+.|.. .++.+.+-|++-. .|..++
T Consensus 34 F~P~~P~I~VnI~~~~~~~~~~EWDVv~C~SF~ee 68 (77)
T PF10718_consen 34 FEPKEPTIHVNIRSLKNGEIEMEWDVVGCLSFVEE 68 (77)
T ss_pred cCCCCCEEEEEEEeCCCCcEEEEEEecccccchhc
Confidence 66889999999887 6899999999877 554433
No 17
>PF13368 Toprim_C_rpt: Topoisomerase C-terminal repeat
Probab=43.11 E-value=9.4 Score=25.15 Aligned_cols=14 Identities=14% Similarity=0.351 Sum_probs=9.8
Q ss_pred ecCccCCCCCceEE
Q psy816 114 VYKRYSAFSNPGTI 127 (138)
Q Consensus 114 i~~R~GpFs~~~ti 127 (138)
..||||||=.-+..
T Consensus 10 ~~GRfGPYv~~g~~ 23 (61)
T PF13368_consen 10 KNGRFGPYVKHGKK 23 (61)
T ss_pred eECCCCceEEECCc
Confidence 57999999544433
No 18
>PF08750 CNP1: CNP1-like family; InterPro: IPR014861 This group of proteins are likely to be lipoproteins. CNP1 (cryptic neisserial protein) has been expressed in Escherichia coli and shown to be localised periplasmicly [].
Probab=40.07 E-value=1.6e+02 Score=22.72 Aligned_cols=32 Identities=31% Similarity=0.624 Sum_probs=21.6
Q ss_pred cccceeeEEEEEEEeCCCC---CCCCccceeeceec
Q psy816 54 DMAAIESYQLYAYQENKNV---PVNSSLWKNIGKLE 86 (138)
Q Consensus 54 ~~A~v~sYeLyayqe~~~~---~~~~~~WKKig~Vk 86 (138)
.|+. -.|-+|||-.+++. .+....|++|++..
T Consensus 73 rC~t-~e~K~YA~g~~~~~~W~~~r~~~W~~i~~~~ 107 (139)
T PF08750_consen 73 RCAT-GEYKIYAYGDPDNGRWIPPRNADWQPIGNGN 107 (139)
T ss_pred eecC-CceEEEEeccCccccccccccccceEccccc
Confidence 4553 46889999877622 23456799998763
No 19
>PF11344 DUF3146: Protein of unknown function (DUF3146); InterPro: IPR021492 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=38.34 E-value=24 Score=25.46 Aligned_cols=15 Identities=40% Similarity=0.700 Sum_probs=12.8
Q ss_pred ecCCCcEEEEEEEEe
Q psy816 98 QFTAGHTYHFLVRAI 112 (138)
Q Consensus 98 qf~~g~~YyFaVRav 112 (138)
|.-+|..|-|+|||+
T Consensus 66 ~LEpGgdY~Ftirak 80 (80)
T PF11344_consen 66 QLEPGGDYSFTIRAK 80 (80)
T ss_pred eccCCCceEEEEecC
Confidence 557899999999985
No 20
>COG2107 Predicted periplasmic solute-binding protein [General function prediction only]
Probab=28.36 E-value=10 Score=32.75 Aligned_cols=35 Identities=29% Similarity=0.500 Sum_probs=26.2
Q ss_pred ccceeeEEEE-EEEeCCCCCCCCccceeeceecccCceeeEEe
Q psy816 55 MAAIESYQLY-AYQENKNVPVNSSLWKNIGKLEALPLPMACTL 96 (138)
Q Consensus 55 ~A~v~sYeLy-ayqe~~~~~~~~~~WKKig~VkAlPLPMaCtL 96 (138)
|+..-+|+.| .+..-+-. +.||.... |||||.|..
T Consensus 144 HE~~~ty~~~gL~~v~Dl~----d~W~~~~~---LPlPLG~~~ 179 (272)
T COG2107 144 HEEQLTYALYGLKKVLDLG----DWWKEKTG---LPLPLGCIA 179 (272)
T ss_pred eehhcchhhhCceEeeeHH----HHHHHhcC---CCcCcchhh
Confidence 6667788888 77666542 58998755 999999964
No 21
>KOG1378|consensus
Probab=27.90 E-value=3.7e+02 Score=24.91 Aligned_cols=19 Identities=11% Similarity=0.326 Sum_probs=15.5
Q ss_pred eEEeeecCCCcEEEEEEEE
Q psy816 93 ACTLTQFTAGHTYHFLVRA 111 (138)
Q Consensus 93 aCtLtqf~~g~~YyFaVRa 111 (138)
-|+++.+..+.+|||-|=+
T Consensus 110 ~~~~~~L~~~t~YyY~~Gs 128 (452)
T KOG1378|consen 110 DAVMKNLEPNTRYYYQVGS 128 (452)
T ss_pred eeeecCCCCCceEEEEeCC
Confidence 3678899999999998743
No 22
>KOG4221|consensus
Probab=26.70 E-value=2.6e+02 Score=29.41 Aligned_cols=79 Identities=19% Similarity=0.333 Sum_probs=56.9
Q ss_pred CCCCCc-eEEEEEeecCCcEEEEEeCCCCCcccceeeEEEEEEEeCCCCCCCCccceeeceecccCceee---EEeeecC
Q psy816 25 MVPAAP-KLRVQLADAGKGIQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGKLEALPLPMA---CTLTQFT 100 (138)
Q Consensus 25 ~~P~~P-~L~l~i~~~~~gIvLsWn~~~~~~~A~v~sYeLyayqe~~~~~~~~~~WKKig~VkAlPLPMa---CtLtqf~ 100 (138)
.+|.+| +|++. -.-+.|+++|.=+..+.- .|-+|.||-- .|+++-|.+--.|+=. .+|+|..
T Consensus 718 ~vp~~ps~l~~~--~g~~si~vsW~Pp~~~~~-~vrgY~ig~r-----------~g~~~p~~~tIrl~~~~s~y~l~~Le 783 (1381)
T KOG4221|consen 718 RVPGKPSELHVH--PGSNSIVVSWTPPPHPNI-VVRGYKIGYR-----------PGSGIPDTGTIRLDEKVSYYNLEQLE 783 (1381)
T ss_pred cCCCCCceeeec--cCceeEEEEeCCCCChhh-hhcceEEeee-----------cccCCCCCccEEecceeeEEEEEecc
Confidence 456666 35443 446889999987664432 4588999864 3666666666555543 5799999
Q ss_pred CCcEEEEEEEEeeecCc
Q psy816 101 AGHTYHFLVRAIDVYKR 117 (138)
Q Consensus 101 ~g~~YyFaVRavDi~~R 117 (138)
.+..|-.-|||-|-||=
T Consensus 784 ~~~~YvVkL~AfNn~gd 800 (1381)
T KOG4221|consen 784 PNRDYVVKLRAFNNHGD 800 (1381)
T ss_pred cCceEEEEEEEeccCCC
Confidence 99999999999999984
No 23
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=26.23 E-value=49 Score=33.06 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=25.4
Q ss_pred eecCCCcEEEEEEEEeeecCccCCCCCce
Q psy816 97 TQFTAGHTYHFLVRAIDVYKRYSAFSNPG 125 (138)
Q Consensus 97 tqf~~g~~YyFaVRavDi~~R~GpFs~~~ 125 (138)
...++|.+|||-+|+||.-|+-++..+-+
T Consensus 762 ~~i~~g~~~~F~~R~Vn~vG~~~~~ev~G 790 (952)
T COG4733 762 VGIQAGLTFWFRNRNVDLVGNNDKWEVYG 790 (952)
T ss_pred cCcCCCceEEEEeeecccccccccceEcC
Confidence 57889999999999999999999887444
No 24
>PF11412 DsbC: Disulphide bond corrector protein DsbC; PDB: 1JPE_A 1JZD_C 1Z5Y_D 1VRS_A 3PFU_A 1L6P_A 2K0R_A 2K9F_B.
Probab=25.66 E-value=1.4e+02 Score=20.78 Aligned_cols=27 Identities=19% Similarity=0.412 Sum_probs=17.9
Q ss_pred EEEEEeecCCcEEEEEeCCCCCcccceeeEEEEEE
Q psy816 32 LRVQLADAGKGIQLTWSLDTTSDMAAIESYQLYAY 66 (138)
Q Consensus 32 L~l~i~~~~~gIvLsWn~~~~~~~A~v~sYeLyay 66 (138)
.++++......|+|+|++.. +||||.-
T Consensus 11 f~~s~~~~~~~l~l~~~i~~--------gwhlY~~ 37 (117)
T PF11412_consen 11 FKFSAAGDTYELVLTFTIAP--------GWHLYSD 37 (117)
T ss_dssp EEEEEEEETTEEEEEEEE-C--------TEEEECC
T ss_pred eeeeecCCCEEEEEEEEECC--------CcEEecc
Confidence 34444467889999999884 5666654
No 25
>COG1881 Phospholipid-binding protein [General function prediction only]
Probab=25.20 E-value=52 Score=26.25 Aligned_cols=28 Identities=36% Similarity=0.483 Sum_probs=20.0
Q ss_pred ceeeceecccCceeeEEeeecCCCcEEEEEEEEeee
Q psy816 79 WKNIGKLEALPLPMACTLTQFTAGHTYHFLVRAIDV 114 (138)
Q Consensus 79 WKKig~VkAlPLPMaCtLtqf~~g~~YyFaVRavDi 114 (138)
|-+.+..-+.|.. ..+++|+|.|-|.|+
T Consensus 112 ~g~~~Y~Gp~PP~--------g~~HrY~f~vyALd~ 139 (174)
T COG1881 112 FGSRGYGGPCPPK--------GHGHRYYFTVYALDV 139 (174)
T ss_pred ccccCcccCCCCC--------CCCeEEEEEEEEccc
Confidence 5556666666643 223999999999997
No 26
>PF01404 Ephrin_lbd: Ephrin receptor ligand binding domain; InterPro: IPR001090 Interactions between the Eph receptor tyrosine kinases and their membrane-bound ligands, ephrins are promiscuous, but largely fall into two groups: EphA receptors bind to GPI-anchored ephrin-A ligands, while EphB receptors bind to ephrin-B proteins that have a transmembrane and cytoplasmic domain []. Remarkably, ephrin-B proteins transduce signals, such that bidirectional signalling can occur upon interaction with Eph receptor. An important role of Eph receptors and ephrins is to mediate cell-contact-dependent repulsion. Eph receptors and ephrins also act at boundaries to channel neuronal growth cones along specific pathways, restrict the migration of neural crest cells, and via bidirectional signalling prevent intermingling between hindbrain segments. Intriguingly, Eph receptors and ephrins can also trigger an adhesive response of endothelial cells and are required for the remodelling of blood vessels []. Biochemical studies suggest that the extent of multimerisation of Eph receptors modulates the cellular response and that the actin cytoskeleton is one major target of the intracellular pathways activated by Eph receptors []. Eph receptors and ephrins have thus emerged as key regulators of the repulsion and adhesion of cells that underlie the establishment, maintenance, and remodelling of patterns of cellular organisation [].; GO: 0005003 ephrin receptor activity, 0005524 ATP binding, 0016020 membrane; PDB: 2BBA_A 2HLE_A 3NRU_L 1SHW_B 1KGY_A 3ETP_A 1NUK_A 2WO2_A 3CKH_A 2WO3_A ....
Probab=24.28 E-value=1.1e+02 Score=24.53 Aligned_cols=48 Identities=19% Similarity=0.394 Sum_probs=29.7
Q ss_pred EEEEEeCCC-CC-cccc---eeeEEEEEEEeCC-C-----CCCCCccceeeceecccCc
Q psy816 43 IQLTWSLDT-TS-DMAA---IESYQLYAYQENK-N-----VPVNSSLWKNIGKLEALPL 90 (138)
Q Consensus 43 IvLsWn~~~-~~-~~A~---v~sYeLyayqe~~-~-----~~~~~~~WKKig~VkAlPL 90 (138)
|-|.-+|-+ .+ ..+. =+++.||.||-+. . .......|.||+.|.|--.
T Consensus 69 Vel~Ft~rdC~s~~~~~~sCkETFnLyy~esd~~~~~~~~~~~~~~~y~kvdTIAade~ 127 (178)
T PF01404_consen 69 VELKFTMRDCSSFPGVAGSCKETFNLYYYESDSDDATSNSPAWNENPYTKVDTIAADES 127 (178)
T ss_dssp EEEEEEEB-GGGSTTSTTTSBSEEEEEEEEESSSTTTSSSSSSSGCCSEEEEEEE-SSE
T ss_pred EEEEEEehhcccCCCCCCcccceeeeeeeecccccccccccccCccccccccccccccc
Confidence 356666655 21 1122 3679999998665 1 2334577999999999876
No 27
>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)
Probab=23.99 E-value=2e+02 Score=18.16 Aligned_cols=23 Identities=35% Similarity=0.274 Sum_probs=20.1
Q ss_pred CCcEEEEEEEEeeecCccCCCCC
Q psy816 101 AGHTYHFLVRAIDVYKRYSAFSN 123 (138)
Q Consensus 101 ~g~~YyFaVRavDi~~R~GpFs~ 123 (138)
++..|-|.|++.|.-|-.+..+.
T Consensus 22 ~dG~y~itv~a~D~AGN~s~~~~ 44 (54)
T PF13754_consen 22 ADGTYTITVTATDAAGNTSTSSS 44 (54)
T ss_pred CCccEEEEEEEEeCCCCCCCccc
Confidence 58999999999999999887743
No 28
>smart00112 CA Cadherin repeats. Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.
Probab=23.93 E-value=1.8e+02 Score=18.48 Aligned_cols=19 Identities=21% Similarity=0.067 Sum_probs=15.0
Q ss_pred cCCCcEEEEEEEEeeecCc
Q psy816 99 FTAGHTYHFLVRAIDVYKR 117 (138)
Q Consensus 99 f~~g~~YyFaVRavDi~~R 117 (138)
+.....|-|.|+|.|.-+.
T Consensus 41 ~e~~~~y~l~v~a~D~~~~ 59 (79)
T smart00112 41 REEQPEYTLTVEATDGGGP 59 (79)
T ss_pred eeCCCeEEEEEEEEECCCC
Confidence 4445899999999997654
No 29
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=22.74 E-value=1.1e+02 Score=26.67 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=23.4
Q ss_pred ceeeceeccc---CceeeEEeeecCCCcEEEEEEEEe--eecCccCCCC
Q psy816 79 WKNIGKLEAL---PLPMACTLTQFTAGHTYHFLVRAI--DVYKRYSAFS 122 (138)
Q Consensus 79 WKKig~VkAl---PLPMaCtLtqf~~g~~YyFaVRav--Di~~R~GpFs 122 (138)
+.+.|.+.+. --...++++..+++.+|||.|+.. +.-.+.|-|.
T Consensus 48 ~~~~~~~~~~~~~d~t~~v~v~gL~p~t~Y~Y~~~~~~~~~~s~~g~~r 96 (453)
T PF09423_consen 48 VVRSGTVTTTAERDFTVKVDVTGLQPGTRYYYRFVVDGGGQTSPVGRFR 96 (453)
T ss_dssp EEEEEEEEE-GGGTTEEEEEE-S--TT-EEEEEEEE--TTEE---EEEE
T ss_pred eEEecceecccCCCeEeecccCCCCCCceEEEEEEEecCCCCCCceEEE
Confidence 4444444333 245568999999999999999993 4555555554
No 30
>PF03875 Statherin: Statherin; InterPro: IPR005575 Statherin functions biologically to inhibit the nucleation and growth of calcium phosphate minerals. The N terminus of statherin is highly charged, the glutamic acids of which have been shown to be important in the recognition hydroxyapatite [].
Probab=22.30 E-value=39 Score=21.54 Aligned_cols=10 Identities=30% Similarity=0.683 Sum_probs=7.6
Q ss_pred cCccCCCCCc
Q psy816 115 YKRYSAFSNP 124 (138)
Q Consensus 115 ~~R~GpFs~~ 124 (138)
+|||||+--+
T Consensus 16 ~grygpyqp~ 25 (42)
T PF03875_consen 16 YGRYGPYQPF 25 (42)
T ss_pred ccccCCcCCC
Confidence 6899998643
No 31
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=21.31 E-value=54 Score=25.46 Aligned_cols=24 Identities=25% Similarity=0.719 Sum_probs=15.5
Q ss_pred CceeeEEeeecCCCcEEEEEEEEeeec
Q psy816 89 PLPMACTLTQFTAGHTYHFLVRAIDVY 115 (138)
Q Consensus 89 PLPMaCtLtqf~~g~~YyFaVRavDi~ 115 (138)
|+|++- .|+.|+.|||+-.+-.-+
T Consensus 98 P~p~G~---EF~pG~~YY~ISts~g~~ 121 (145)
T PF00812_consen 98 PFPLGL---EFQPGHDYYYISTSTGTQ 121 (145)
T ss_dssp SSTTSS---S--TTEEEEEEEEESSSS
T ss_pred CCCCCe---eecCCCeEEEEEccCCCC
Confidence 555543 589999999998775443
No 32
>PLN02533 probable purple acid phosphatase
Probab=20.82 E-value=3.1e+02 Score=24.33 Aligned_cols=18 Identities=6% Similarity=0.226 Sum_probs=15.8
Q ss_pred EEeeecCCCcEEEEEEEE
Q psy816 94 CTLTQFTAGHTYHFLVRA 111 (138)
Q Consensus 94 CtLtqf~~g~~YyFaVRa 111 (138)
.+|+..++|.+|||.|.+
T Consensus 105 v~l~~L~p~T~Y~Yrvg~ 122 (427)
T PLN02533 105 VVIGPLKPNTVYYYKCGG 122 (427)
T ss_pred EEeCCCCCCCEEEEEECC
Confidence 489999999999999963
Done!