RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy816
(138 letters)
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 36.7 bits (85), Expect = 4e-04
Identities = 20/108 (18%), Positives = 36/108 (33%), Gaps = 15/108 (13%)
Query: 26 VPAAPKLRVQLADAGKG-IQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGK 84
VPA P L+++ L+W + Y L N ++ +
Sbjct: 9 VPATPILQLEECCTHNNSATLSWK-QPPLSTVPADGYILELD------DGNGGQFREVYV 61
Query: 85 LEALPLPMACTLTQFTAGHTYHFLVRAIDVYKRYSAFSNPGTIHLRTP 132
+ CT+ TY+ V+A + S +S + L+T
Sbjct: 62 GKET----MCTVDGLHFNSTYNARVKAFNKTG-VSPYSKT--LVLQTS 102
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1,
midin-2, ring finger protein 60, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 127
Score = 34.9 bits (80), Expect = 0.002
Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 11/112 (9%)
Query: 26 VPAAPKLRVQLADAGKG-IQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGK 84
P P +R +L A I + W D +I SY+L Y SL+ ++
Sbjct: 15 APNPPSIREELCTASHDTITVHWISDDEF---SISSYELQ-YTIFTGQANFISLYNSVDS 70
Query: 85 LEALP--LPMACTLTQFTAGHTYHFLVRAIDVYKRYSAFSNPGTIHLRTPAT 134
+P T+ +G Y F+V+AI+ N L+T +
Sbjct: 71 WMIVPNIKQNHYTVHGLQSGTRYIFIVKAINQA----GSRNSEPTRLKTNSQ 118
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B
3ew3_B 3npz_B 1f6f_B 2lfg_A
Length = 210
Score = 35.1 bits (80), Expect = 0.003
Identities = 24/133 (18%), Positives = 45/133 (33%), Gaps = 17/133 (12%)
Query: 11 PTPSVSNVVGAMYEMVPAAP-KLRVQL---ADAGKGIQLTWSLDTTSDMAAIESYQLY-- 64
+ S V Y + P P +L V++ D + + WS T D+ LY
Sbjct: 87 SSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEI 146
Query: 65 AYQENKNVPVNSSLWKNIGKLEALPLPMACTLTQFTAGHTYHFLVRAIDVYKRYSAFSNP 124
+ P ++ W+ + + G Y VR + +SA+S
Sbjct: 147 RLK-----PEKAAEWEIHFAGQQTE----FKILSLHPGQKYLVQVRCKPDHGYWSAWSPA 197
Query: 125 GTIHLRTPATVNL 137
++ P+ +
Sbjct: 198 --TFIQIPSDFTM 208
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 34.6 bits (78), Expect = 0.008
Identities = 15/112 (13%), Positives = 31/112 (27%), Gaps = 4/112 (3%)
Query: 5 VRAPVPPTPSVSNVVGAMYEMVPAAP---KLRVQLADAGKGIQLTWSLDTTSDMAAIESY 61
++ G + V A P + D +W + + + +
Sbjct: 503 LKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTGF 562
Query: 62 QLYAYQENKNVPVNSSLWKNIGKLEALPLP-MACTLTQFTAGHTYHFLVRAI 112
Q+ + NS I + + LP T+ Y V+ +
Sbjct: 563 QVTWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVL 614
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 33.6 bits (76), Expect = 0.014
Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 13/110 (11%)
Query: 27 PAAP-KLRVQLADAGKG-IQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGK 84
P P L V ++ ++LTW+ + + ++ Y + Y+ ++S W I
Sbjct: 200 PNPPHNLSVINSEELSSILKLTWTNPSIKSVIILK-YNIQ-YR-----TKDASTWSQIPP 252
Query: 85 LEALPLPMACTLTQFTAGHTYHFLVRAIDV--YKRYSAFSNPGTIHLRTP 132
+ + T+ Y F +R + +S +S T
Sbjct: 253 EDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEE--ASGITY 300
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
protein, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 120
Score = 32.2 bits (73), Expect = 0.020
Identities = 12/91 (13%), Positives = 27/91 (29%), Gaps = 7/91 (7%)
Query: 43 IQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGKLEALPLPMACTLTQFTAG 102
I+L W L+ + L E ++ ++S + I A +
Sbjct: 32 IELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHS--YGVIYTGYA----TRHVVEGLEPR 85
Query: 103 HTYHFLVRAIDVYKRYSAFSNPGTIHLRTPA 133
Y F ++ +S ++ +
Sbjct: 86 TLYKFRLKVTSPS-GEYEYSPVVSVATTRES 115
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 32.7 bits (74), Expect = 0.020
Identities = 19/115 (16%), Positives = 40/115 (34%), Gaps = 13/115 (11%)
Query: 25 MVPAAP-KLRVQLADAGKG-IQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNI 82
+ P P L V ++ ++LTW+ + + ++ Y + Y+ ++S W I
Sbjct: 102 VKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILK-YNIQ-YR-----TKDASTWSQI 154
Query: 83 GKLEALPLPMACTLTQFTAGHTYHFLVRAIDV--YKRYSAFSNPGTIHLRTPATV 135
+ + T+ Y F +R + +S +S T
Sbjct: 155 PPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEE--ASGITYEDR 207
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 33.1 bits (75), Expect = 0.022
Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 13/128 (10%)
Query: 12 TPSVSNVVGAMYEMVPAAPK-LRVQLADAGKG-IQLTWSLDTTSDMAAIESYQLYAYQEN 69
S +Y++ P P L V ++ ++LTW+ + I Y + Y+
Sbjct: 184 VTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKS-VIILKYNIQ-YR-- 239
Query: 70 KNVPVNSSLWKNIGKLEALPLPMACTLTQFTAGHTYHFLVRAIDVYKR--YSAFSNPGTI 127
++S W I + + T+ Y F +R + + +S +S
Sbjct: 240 ---TKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEE--A 294
Query: 128 HLRTPATV 135
T
Sbjct: 295 SGITYEDR 302
Score = 26.1 bits (57), Expect = 4.5
Identities = 13/136 (9%), Positives = 33/136 (24%), Gaps = 22/136 (16%)
Query: 16 SNVVGAMYEMVPAAPKLRVQLADAGKGIQLTWSLDTTSDMAAIESYQLYAYQENKNVPVN 75
+ + + P + ++ + + W+ S ++ Y L + +
Sbjct: 389 AVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRES----VKKYILE-WCVLSDKAPC 443
Query: 76 SSLWKNIGKLEALPLPMACTLTQFTAGHTYHFLVRA-----------IDVYKRYSAFSNP 124
+ W+ + Y V I Y + + S
Sbjct: 444 ITDWQQEDG----TVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKG 499
Query: 125 GTIHLR--TPATVNLS 138
T+ + L
Sbjct: 500 PTVRTKKVGKNEAVLE 515
Score = 26.1 bits (57), Expect = 4.6
Identities = 17/101 (16%), Positives = 30/101 (29%), Gaps = 19/101 (18%)
Query: 16 SNVVGAMYEMVPAAPKLRVQLADAGKG-IQLTWSLDTTSD-MAAIESYQLY---AYQENK 70
++ + + P+ V+ GK L W I +Y ++
Sbjct: 485 ESIKAYLKQAPPSKGP-TVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNET 543
Query: 71 NVPVNSSLWKNIGKLEALPLPMACTLTQFTAGHTYHFLVRA 111
V V+SS TL+ T+ Y + A
Sbjct: 544 AVNVDSSH-------------TEYTLSSLTSDTLYMVRMAA 571
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 31.5 bits (72), Expect = 0.027
Identities = 20/88 (22%), Positives = 28/88 (31%), Gaps = 11/88 (12%)
Query: 26 VPAAPKLRVQLADAGK-GIQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGK 84
P+ P L AG + L WS + + SY L +E S K
Sbjct: 7 GPSMP-ASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEET------SGYGF---K 56
Query: 85 LEALPLPMACTLTQFTAGHTYHFLVRAI 112
+ +A T+ Y F V A
Sbjct: 57 PKYDGEDLAYTVKNLRRSTKYKFKVIAY 84
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain,
carbohydrase, horizontal gene transfer, hydrolase; NMR
{Bacillus circulans} SCOP: b.1.2.1
Length = 88
Score = 30.7 bits (70), Expect = 0.042
Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 20/99 (20%)
Query: 27 PAAPK-LRVQLADAGKGIQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGKL 85
P AP L I L+W ++D + Y +Y ++L +
Sbjct: 4 PTAPTNLASTAQTTS-SITLSW--TASTDNVGVTGYDVY---------NGTALATTVTGT 51
Query: 86 EALPLPMACTLTQFTAGHTYHFLVRAIDVYKRYSAFSNP 124
T++ A +Y F V+A D SA SN
Sbjct: 52 -------TATISGLAADTSYTFTVKAKDAAGNVSAASNA 83
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains
of fibronectin-III domains, FOU fibronectin-III domains
PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A*
3cxe_A* 1egj_A* 1c8p_A
Length = 419
Score = 32.3 bits (72), Expect = 0.043
Identities = 20/105 (19%), Positives = 34/105 (32%), Gaps = 14/105 (13%)
Query: 27 PAAPKLRVQLADAGKGIQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGKLE 86
A P L+V G L W ++++ Y+++ ++ WK+ K E
Sbjct: 322 MAPPSLQVT--KDGDSYSLRWETMKMRYEHIDHTFEIQ-YRKD------TATWKDS-KTE 371
Query: 87 ALPLPMACTLTQFTAGHTYHFLVRAIDVYKRY----SAFSNPGTI 127
L + L Y VR Y S +S +
Sbjct: 372 TLQNAHSMALPALEPSTRYWARVRVRTSRTGYNGIWSEWSEARSW 416
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III
repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 30.4 bits (69), Expect = 0.061
Identities = 12/88 (13%), Positives = 26/88 (29%), Gaps = 8/88 (9%)
Query: 26 VPAAPKLRVQLADAGKGIQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGKL 85
P++P Q+ Q+ + + I Y+ ++ V +W +
Sbjct: 6 TPSSPS-IDQVEPYSSTAQVQFDEPEATGGVPILKYKAE-WRA-----VGEEVWHSKWYD 58
Query: 86 EALPLPM-ACTLTQFTAGHTYHFLVRAI 112
T+ TY + A+
Sbjct: 59 AKEASMEGIVTIVGLKPETTYAVRLAAL 86
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 31.7 bits (71), Expect = 0.073
Identities = 21/132 (15%), Positives = 42/132 (31%), Gaps = 16/132 (12%)
Query: 4 KVRA--PVPPTPSVSNVVGAMYEMVPAAPKLRVQLADAGKGIQLTWSLDTTSDMAAIESY 61
V A V + + A + P + + ++WS+ + + Y
Sbjct: 416 TVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQ-SRVWKY 474
Query: 62 QLYAYQENKNVPVNSSLWKNIGKLEALPLPMACTLTQFTAGHTYHFLVRAIDVYKRYSAF 121
++ Y++ S N+ + E + TL TY V+A+ A
Sbjct: 475 EVT-YRKK-----GDSNSYNVRRTEGF----SVTLDDLAPDTTYLVQVQALTQEG-QGAG 523
Query: 122 SNPGTIHLRTPA 133
S +T +
Sbjct: 524 SKV--HEFQTLS 533
Score = 25.9 bits (56), Expect = 5.0
Identities = 13/93 (13%), Positives = 26/93 (27%), Gaps = 4/93 (4%)
Query: 22 MYEMVPAAPKLRVQLADAGKGIQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKN 81
M P + + G ++L W+ S Y + ++ +
Sbjct: 328 MPCTRPPSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVT-CEQCWPESGECGPCEA 386
Query: 82 IGKLEALPLPMA---CTLTQFTAGHTYHFLVRA 111
+ P + T++ Y F V A
Sbjct: 387 SVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEA 419
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 30.9 bits (70), Expect = 0.090
Identities = 17/88 (19%), Positives = 33/88 (37%), Gaps = 12/88 (13%)
Query: 26 VPAAPKLRVQLADAGK-GIQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGK 84
VP P+ V+++D + + LTW+ + + I +Y + + W +G+
Sbjct: 198 VPDPPR-GVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCA------TTAERWLRVGQ 250
Query: 85 LEALPLPMACTLTQFTAGHTYHFLVRAI 112
T+ +Y F V A
Sbjct: 251 ----ARETRYTVINLFGKTSYQFRVIAE 274
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 121
Score = 30.2 bits (68), Expect = 0.11
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 94 CTLTQFTAGHTYHFLVRAIDVYKRYSAFSNPGTIHLRT 131
T++ G Y V A+ + A S P +I+ RT
Sbjct: 84 ATISGLKPGVDYTITVYAVTGLRLMLAGSKPISINYRT 121
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase,
periplasm, beta-helix, glycosidase, EXO-activity; HET:
AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A*
Length = 608
Score = 30.4 bits (68), Expect = 0.16
Identities = 26/134 (19%), Positives = 38/134 (28%), Gaps = 16/134 (11%)
Query: 16 SNVVGAMYEMVPAAPKLRV-QLADAGKGIQLTWSLDTTSDMAAIESYQLY--------AY 66
+ A + A +L+V LA I L W D I YQ++ A
Sbjct: 25 PMAMAAKSSSLDAPQQLQVPTLAYDESSIVLVW--KAPEDTRKIVDYQIFSAGKLLGKAS 82
Query: 67 QENKNVPVNSSLWKNIGKLEALPLPMACTLTQFT-----AGHTYHFLVRAIDVYKRYSAF 121
N N + + + FT +Y F V+A S
Sbjct: 83 DNNDNFSPAKPYIDHFYVNDKDNFQHKIVMQNFTVIGLKPETSYQFTVKAQYADGSLSVA 142
Query: 122 SNPGTIHLRTPATV 135
S P T +
Sbjct: 143 SKPITAKTSAKPQI 156
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 29.3 bits (66), Expect = 0.18
Identities = 23/109 (21%), Positives = 35/109 (32%), Gaps = 13/109 (11%)
Query: 26 VPAAP-KLRVQLADAGKGIQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGK 84
P P K V+ ++TW + A I Y + E N + W+ I
Sbjct: 17 KPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVE-MAEGSN----GNKWEMIYS 71
Query: 85 LEALPLPMACTLTQFTAGHTYHFLVRAIDVYKRYSAFSNPGTIHLRTPA 133
+ G Y V I + SA S + ++TPA
Sbjct: 72 GATR----EHLCDRLNPGCFYRLRVYCISDGGQ-SAVSES--LLVQTPA 113
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 124
Score = 28.9 bits (65), Expect = 0.31
Identities = 17/103 (16%), Positives = 35/103 (33%), Gaps = 11/103 (10%)
Query: 13 PSVSNVVGAMYEMVPAAPKLRVQLADAGK-GIQLTWS--LDTTSDMAAIESYQLYAYQEN 69
S + G E +P P + +++ G + L + D + +I + + +
Sbjct: 5 SSGTISSGVPPE-LPGPPT-NLGISNIGPRSVTLQFRPGYDGKT---SISRWLV---EAQ 56
Query: 70 KNVPVNSSLWKNIGKLEALPLPMACTLTQFTAGHTYHFLVRAI 112
V W I +L P + + Y F +R +
Sbjct: 57 VGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQV 99
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 28.9 bits (65), Expect = 0.46
Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 12/88 (13%)
Query: 26 VPAAPKLRVQLADAGKG-IQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGK 84
P P ++ L D + + L+W + I Y + Q S W
Sbjct: 102 RPLPP-GKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVE-MQTK-----GSDKWATCAT 154
Query: 85 LEALPLPMACTLTQFTAGHTYHFLVRAI 112
++ T+T G Y F V A
Sbjct: 155 VKVT----EATITGLIQGEEYSFRVSAQ 178
Score = 26.5 bits (59), Expect = 2.8
Identities = 15/88 (17%), Positives = 32/88 (36%), Gaps = 11/88 (12%)
Query: 26 VPAAPKLRVQLADAGK-GIQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGK 84
P P+ +++ + K + LTW + I++Y + +E +
Sbjct: 5 TPGPPQ-DLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVE-KRE-----STRKAYS---T 54
Query: 85 LEALPLPMACTLTQFTAGHTYHFLVRAI 112
+ + + Q G +Y+F V A
Sbjct: 55 VATNCHKTSWKVDQLQEGCSYYFRVLAE 82
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 28.1 bits (63), Expect = 0.48
Identities = 21/113 (18%), Positives = 36/113 (31%), Gaps = 11/113 (9%)
Query: 13 PSVSNVVGAMYEMVPAAPKLRVQLADAGK-GIQLTWSLDTTSDMAAIESYQLYAYQENKN 71
S A +P+AP+ V + I+LTW + +Y ++ Y +
Sbjct: 4 GSSGEHAPATTGPLPSAPR-DVVASLVSTRFIKLTWRTPASDPHGDNLTYSVF-YTKE-- 59
Query: 72 VPVNSSLWKNIGKLEALPLPMACTLTQFTAGHTYHFLVRAIDVYKRYSAFSNP 124
+ + P M T+ Y F V A + + S P
Sbjct: 60 ---GIARERVENTSH--PGEMQVTIQNLMPATVYIFRVMAQNKHG-SGESSAP 106
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic
cytokine, cytokine receptor class 1, complex
(cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Length = 227
Score = 28.9 bits (64), Expect = 0.48
Identities = 29/137 (21%), Positives = 50/137 (36%), Gaps = 16/137 (11%)
Query: 4 KVRAPVPPTPSVSNVVGAMYEMVPAAPK-LRVQLADAGKGIQLTWSLDTTSDMAAIESYQ 62
+V A P V+ ++ AP L +LAD + L W + M + Y+
Sbjct: 100 RVTA-ASGAPRYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYE 158
Query: 63 LYAYQENKNVPVNSSLWKNIGKLEALPLPMACTLTQFTAGHTYHFLVRAIDVYKRY---- 118
+ + ++ ++E L C L+ Y F VRA +
Sbjct: 159 V-DVSAGQG-------AGSVQRVEILEGRTECVLSNLRGRTRYTFAVRARMAEPSFGGFW 210
Query: 119 SAFSNPGTIHLRTPATV 135
S +S P + L TP+ +
Sbjct: 211 SEWSEP--VSLLTPSDL 225
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type
III domain containing protein, cytoskeleton, muscle
contraction; NMR {Mus musculus} SCOP: b.1.2.1
Length = 111
Score = 28.1 bits (63), Expect = 0.53
Identities = 14/88 (15%), Positives = 22/88 (25%), Gaps = 10/88 (11%)
Query: 26 VPAAPKLRVQLADAGKG-IQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGK 84
+AP + + D L W I+ Y + E S W
Sbjct: 8 PTSAP-QHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEG------SEEWVPAN- 59
Query: 85 LEALPLPMACTLTQFTAGHTYHFLVRAI 112
+ T+ G F V +
Sbjct: 60 -KEPVERCGFTVKDLPTGARILFRVVGV 86
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 29.1 bits (64), Expect = 0.55
Identities = 19/112 (16%), Positives = 33/112 (29%), Gaps = 21/112 (18%)
Query: 43 IQLTWSLDTTSDMAAIESYQLY----AYQENKNVPVNSSLWKNIGKLEALPLP------- 91
I L W D + + L+ YQ + N + + P
Sbjct: 485 ILLRWEPYWPPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPK 544
Query: 92 ----MACTLTQFTAGHTYHFLVRAI----DVYKRYSAFSNPGTIHLRTPATV 135
+ Y V+ + D + Y A S+ I+++T AT
Sbjct: 545 SQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDI--IYVQTDATN 594
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3,
immunoglobulin-like beta- sandwich fold, KIAA0970,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 106
Score = 27.7 bits (62), Expect = 0.62
Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 17/110 (15%)
Query: 26 VPAAP-KLRVQLADAGKGIQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGK 84
P +V A Q+ W S+ + Y+L + +
Sbjct: 7 GPDQCKPPQVTCRSAT-CAQVNWE-VPLSNGTDVTEYRLE-WGGV------EGSMQICYC 57
Query: 85 LEALPLPMACTLTQFTAGHTYHFLVRAIDVYKRYSAFSNPGTIHLRTPAT 134
L + + + TY+ V+A+ V FS + TP +
Sbjct: 58 GPGL----SYEIKGLSPATTYYCRVQALSVV-GAGPFSEV--VACVTPPS 100
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1,
NCAM-120, CD56 antigen, membra protein, glycoprotein,
structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo
sapiens}
Length = 122
Score = 27.8 bits (62), Expect = 0.70
Identities = 17/111 (15%), Positives = 34/111 (30%), Gaps = 12/111 (10%)
Query: 26 VPAAPKLRVQLADAGKG-IQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGK 84
P++P + + Q+ + + I Y+ ++ V +W +
Sbjct: 7 GPSSP--SIDQVEPYSSTAQVQFDEPEATGGVPILKYKAE-WRA-----VGEEVWHSKWY 58
Query: 85 LEALPLPMA-CTLTQFTAGHTYHFLVRAIDVY--KRYSAFSNPGTIHLRTP 132
T+ TY + A++ SA S T +R P
Sbjct: 59 DAKEASMEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREP 109
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 28.3 bits (63), Expect = 0.70
Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 6/87 (6%)
Query: 26 VPAAPKLRVQLADAGKGIQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGKL 85
P++P + Q+ Q+ + + I Y+ + V S W +
Sbjct: 113 TPSSPSI-DQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVW--HSKWYDA--- 166
Query: 86 EALPLPMACTLTQFTAGHTYHFLVRAI 112
+ + T+ TY + A+
Sbjct: 167 KEASMEGIVTIVGLKPETTYAVRLAAL 193
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 28.2 bits (62), Expect = 1.1
Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 6/111 (5%)
Query: 4 KVRA--PVPPTPSVSNVVGAMYEMVP-AAPKLRVQLADAGKGIQLTWSLDTTSDMAAIES 60
K+ P S ++ E +P A P +Q + + I L W T I
Sbjct: 438 KLILMNPEGRKES-QELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPT-QTYGVITL 495
Query: 61 YQLYAYQENKNVPVNSSLWKNIGKLEALPLPMACTLTQFTAGHTYHFLVRA 111
Y++ Y+ + L G++ L G TY F +RA
Sbjct: 496 YEIT-YKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRA 545
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
2.10A {Homo sapiens}
Length = 103
Score = 27.0 bits (60), Expect = 1.1
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 95 TLTQFTAGHTYHFLVRAIDVYKRYSAFSNPGTIHLRT 131
T++ G Y V A D + ++P +I+ RT
Sbjct: 67 TISGLKPGVDYTITVYAYDTFFPGYEPNSPISINYRT 103
>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor
fold, fibronectin type III modules, helical bundle,
cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo
sapiens}
Length = 317
Score = 27.9 bits (61), Expect = 1.1
Identities = 13/111 (11%), Positives = 29/111 (26%), Gaps = 17/111 (15%)
Query: 22 MYEMVPAAPKLRVQLADAGKGIQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKN 81
++ + P L V G + + W ++ Y++ + +
Sbjct: 215 LHAIDQINPPLNVTAEIEGTRMSIQWEKPVSAFPIHCFDYEV-KIHN-----TRNGYLQI 268
Query: 82 IGKLEALPLPMACTLTQFTAGHTYHFLVRAIDVYKRY-----SAFSNPGTI 127
+ ++ Y VRA S +S P +
Sbjct: 269 EKLMT------NAFISIIDDLSKYDVQVRAAVSSMCREAGLWSEWSQPIYV 313
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor;
2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A
1lwr_A
Length = 209
Score = 27.5 bits (61), Expect = 1.2
Identities = 10/89 (11%), Positives = 27/89 (30%), Gaps = 10/89 (11%)
Query: 26 VPAAPKLRVQLADAGK-GIQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIG- 83
P++P + + Q+ + + I Y+ ++ +W +
Sbjct: 8 TPSSP--SIDQVEPYSSTAQVQFDEPEATGGVPILKYKAE-WRAV-----GEEVWHSKWY 59
Query: 84 KLEALPLPMACTLTQFTAGHTYHFLVRAI 112
+ + T+ TY + A+
Sbjct: 60 DAKEASMEGIVTIVGLKPETTYAVRLAAL 88
Score = 26.3 bits (58), Expect = 3.4
Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 12/101 (11%)
Query: 13 PSVSNVVGAMYEMVPAAPKLRVQLADAGKGIQLTWSLDTTSDMAA-IESYQLYAYQENKN 71
S ++ P+APKL Q+ + G I++ D + I Y + Y+
Sbjct: 96 ISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLI--KQDDGGSPIRHYLVR-YRAL-- 150
Query: 72 VPVNSSLWKNIGKLEALPLPMACTLTQFTAGHTYHFLVRAI 112
SS WK +L + L Y V A
Sbjct: 151 ----SSEWKPEIRLPSGSDH--VMLKSLDWNAEYEVYVVAE 185
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK,
fibronectin type III (FN3) domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Length = 107
Score = 26.7 bits (59), Expect = 1.5
Identities = 18/106 (16%), Positives = 32/106 (30%), Gaps = 17/106 (16%)
Query: 27 PAAPKLRVQLADAGKG-IQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGKL 85
+ L ++L ++LTW+ + SY+L+ +++
Sbjct: 9 ESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMVL-------- 60
Query: 86 EALPLPMACTLTQFTAGHTYHFLVRAIDVYKRYSAFSNPGTIHLRT 131
LT+ TY VR + FS RT
Sbjct: 61 -----EPRVLLTKLQPDTTYIVRVRTLTP-LGPGPFSPD--HEFRT 98
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 1.7
Identities = 20/123 (16%), Positives = 32/123 (26%), Gaps = 35/123 (28%)
Query: 6 RAPVPPTPSVSNVVGAMYEMVPAAPKLRV-------QLADA------GKGIQL------- 45
R P T +Y K V +L A K + +
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 46 -TWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGKL---EALPLPMACTLTQFTA 101
TW + A++ Y Q + + W N+ E + + L Q
Sbjct: 163 KTW-V-------ALDVCLSYKVQCKMDFKI---FWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 102 GHT 104
T
Sbjct: 212 NWT 214
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 27.2 bits (59), Expect = 1.8
Identities = 14/128 (10%), Positives = 32/128 (25%), Gaps = 14/128 (10%)
Query: 11 PTPSVSNVVGAMYEMVPAAPKLRVQLADAGKGIQLTWSLDTTSDMAAIESYQLYAYQENK 70
N+V + P P + L+ + + W + Y++ ++
Sbjct: 184 KIKPSFNIVPLTSRVKPDPPHI-KNLSFHNDDLYVQWENPQNFISRCLF-YEVE-VNNSQ 240
Query: 71 N-----VPVNSSLWKNIGKLEALPLPMACTLTQFTAGHTYHFLVRAIDVYKRY------S 119
V + +N + + +R Y S
Sbjct: 241 TETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRVKTNKLCYEDDKLWS 300
Query: 120 AFSNPGTI 127
+S +I
Sbjct: 301 NWSQEMSI 308
>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B*
2erj_B*
Length = 214
Score = 27.1 bits (59), Expect = 1.8
Identities = 19/111 (17%), Positives = 33/111 (29%), Gaps = 15/111 (13%)
Query: 27 PAAPK-LRVQLADAGKGIQLTWSLDTTSD-MAAIESYQLYAYQENKNVPVNSSLWKNIGK 84
AP L+V + + ++W + S ++ + W+
Sbjct: 106 LMAPISLQVVHVETHR-CNISWEISQASHYFERHLEFEA-RTLSPGHT------WEEAPL 157
Query: 85 LEALPLPMACTLTQFTAGHTYHFLVRAIDVYKRY---SAFSNPGTIHLRTP 132
L L T Y F VR + + S +S P + RT
Sbjct: 158 LTLKQKQEWICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQP--LAFRTK 206
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons,
receptor chain, ifnar1, fibronect III, type I interferon
receptor chain; HET: NAG; 1.90A {Homo sapiens}
Length = 306
Score = 27.2 bits (59), Expect = 1.9
Identities = 19/129 (14%), Positives = 37/129 (28%), Gaps = 10/129 (7%)
Query: 4 KVRAPVPPTPSVSN----VVGAMYEMVPAAPKLRVQLADAGKGIQLTWSLDTTSDMAAIE 59
KV+A + + + P ++++ + L W + ++
Sbjct: 175 KVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQ 234
Query: 60 SYQLYAYQENKNVPVNSSLWKNIGKLEALPLPMACTLTQFT-AGHTYHFLVRAIDVYKRY 118
+ + N + WK I E + C Q Y V+A D
Sbjct: 235 WLHAFLKRNPGN---HLYKWKQIPDCENVK-TTQCVFPQNVFQKGIYLLRVQASDG-NNT 289
Query: 119 SAFSNPGTI 127
S +S
Sbjct: 290 SFWSEEIKF 298
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like
modifier, S NOVO protein; 2.40A {Artificial gene}
Length = 97
Score = 26.2 bits (58), Expect = 2.0
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 95 TLTQFTAGHTYHFLVRAIDVYKRYSAFSNPGTIHLRT 131
T++ + G Y V A Y +P +I+ RT
Sbjct: 61 TISGLSPGVDYTITVYAYYSYYDLYYSYSPSSINYRT 97
>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex;
HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1
Length = 247
Score = 27.1 bits (59), Expect = 2.1
Identities = 19/136 (13%), Positives = 44/136 (32%), Gaps = 20/136 (14%)
Query: 4 KVRAPVPPTPSVSNVVGAMYEMVPAAP-KLRVQLADAGKGIQLTWSLDTTSDMAAIESYQ 62
+++ P P + ++ ++P AP L + + ++L W+ + +
Sbjct: 114 QLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQ-LELNWN---NRFLNHCLEHL 169
Query: 63 LYAYQENKNVPVNSSLWKNIGKLEALPLPMACTLTQFTAGHTYHFLVRAIDV-----YKR 117
+ Y+ + W + +L Y F VR+ +
Sbjct: 170 VQ-YRTD-----WDHSWTEQS----VDYRHKFSLPSVDGQKRYTFRVRSRFNPLCGSAQH 219
Query: 118 YSAFSNPGTIHLRTPA 133
+S +S+P T
Sbjct: 220 WSEWSHPIHWGSNTSK 235
>1x3d_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 118
Score = 26.2 bits (58), Expect = 2.1
Identities = 12/88 (13%), Positives = 28/88 (31%), Gaps = 12/88 (13%)
Query: 26 VPAAPKLRVQLADAGK-GIQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGK 84
P P ++A+ K + L W + + + I+++ L + N +
Sbjct: 17 EPDIPN-PPRIANRTKNSLTLQWK-APSDNGSKIQNFVLEWDEGKGN-----GEFCQCYM 69
Query: 85 LEALPLPMACTLTQFTAGHTYHFLVRAI 112
+T+ + F + A
Sbjct: 70 GSQK----QFKITKLSPAMGCKFRLSAR 93
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 27.2 bits (59), Expect = 2.2
Identities = 19/124 (15%), Positives = 36/124 (29%), Gaps = 11/124 (8%)
Query: 14 SVSNVVGAMYEMVPAAPKLRVQLADAGKG-IQLTWSLDTTSDMAAIESYQLYAYQENKNV 72
+ S VV + E V +++ D + +W + Q+ + N
Sbjct: 373 AQSAVVINVTERVAPHDPTSLKVKDINSTVVTFSWY-LPGNFTKINLLCQIEICKANSKK 431
Query: 73 PVNSSLWKNIGKLEALPLPMACTLTQFTAGHTYHFLVRAIDVYKRY-SAFSNPGTIHLRT 131
V ++ + + + Y F VR S +S+ T
Sbjct: 432 EVRNATIRGAEDSTYH-----VAVDKLNPYTAYTFRVRCSSKTFWKWSRWSDE--KRHLT 484
Query: 132 P-AT 134
AT
Sbjct: 485 TEAT 488
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 26.7 bits (59), Expect = 2.3
Identities = 18/111 (16%), Positives = 37/111 (33%), Gaps = 26/111 (23%)
Query: 7 APVPPT-PSVSNVVGAMYEMVPAAPKLRVQLADAGKGIQLTWSLDTTSDMAAIESYQLYA 65
+ PPT P+V+ + + + + L W + +D I +++
Sbjct: 1 STYPPTPPNVTRL--------------------SDESVMLRWMV-PRNDGLPIVIFKVQY 39
Query: 66 YQENKN---VPVNSSLWKNIGKLEALPLP-MACTLTQFTAGHTYHFLVRAI 112
K N ++ K + ++T HTY F + A+
Sbjct: 40 RMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAV 90
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein
binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP:
b.1.2.1
Length = 115
Score = 26.4 bits (58), Expect = 2.4
Identities = 18/118 (15%), Positives = 37/118 (31%), Gaps = 11/118 (9%)
Query: 26 VPAAPKLRVQLADAGK-GIQLTWSLDTTSDMAAIESYQLYAYQENKN---VPVNSSLWKN 81
P + + L W + +D I +++ K N ++
Sbjct: 2 STYPPT-PPNVTRLSDESVMLRWMVPR-NDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYG 59
Query: 82 IGKLEALPLPM-ACTLTQFTAGHTYHFLVRAIDVY--KRYSAFSNPGTIHLRTPATVN 136
K + ++T HTY F + A+ + S S +L+ A ++
Sbjct: 60 KPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAK--FYLQPGAALD 115
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW-
type protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 110
Score = 26.2 bits (58), Expect = 2.4
Identities = 15/112 (13%), Positives = 32/112 (28%), Gaps = 12/112 (10%)
Query: 26 VPAAPKLRVQLADAGKG-IQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGK 84
+ P + + + + W A ++ Y L E + W
Sbjct: 7 GTSPP-TLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEG------TEDWIVAN- 58
Query: 85 LEALPLPMACTLTQFTAGHTYHFLVRAIDVYKR--YSAFSNPGTIHLRTPAT 134
+ L T+T V+A++ +S P + P++
Sbjct: 59 -KDLIDKTKFTITGLPTDAKIFVRVKAVNAAGASEPKYYSQPILVKESGPSS 109
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 25.8 bits (57), Expect = 3.0
Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 12/101 (11%)
Query: 13 PSVSNVVGAMYEMVPAAPKLRVQLADAGK-GIQLTWSLDTTSDMAAIESYQLYAYQENKN 71
S + + VP P R+ + G ++++W ++ Y + YQ
Sbjct: 4 GSSGSHDSRLTAGVPDTPT-RLVFSALGPTSLRVSWQEPRCE--RPLQGYSVE-YQ---- 55
Query: 72 VPVNSSLWKNIGKLEALPLPMACTLTQFTAGHTYHFLVRAI 112
+N + P + + H+Y F VRA
Sbjct: 56 -LLNGGELHRLN--IPNPAQTSVVVEDLLPNHSYVFRVRAQ 93
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 117
Score = 25.8 bits (57), Expect = 3.4
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 11/88 (12%)
Query: 26 VPAAPKLRVQLADAGKG-IQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGK 84
+P P + Q+ D K + L+W T +Y + A+ ++ S+ W+ +
Sbjct: 15 LPGPPS-KPQVTDVTKNSVTLSWQ-PGTPGTLPASAYIIEAFSQS-----VSNSWQTV-- 65
Query: 85 LEALPLPMACTLTQFTAGHTYHFLVRAI 112
T+ Y F+VRAI
Sbjct: 66 -ANHVKTTLYTVRGLRPNTIYLFMVRAI 92
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 121
Score = 25.8 bits (57), Expect = 4.1
Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 11/102 (10%)
Query: 13 PSVSNVVGAMYEMVPAAPKLRVQLADAGK-GIQLTWSLDTTSDMAAIESYQLYAYQENKN 71
S + P AP R ++ A + + +TW + I+S+++ Y++ K
Sbjct: 4 GSSGSQPDHGRLSPPEAPD-RPTISTASETSVYVTWI-PRGNGGFPIQSFRV-EYKKLKK 60
Query: 72 VPVNSSLWKNIGKLEALPLPMA-CTLTQFTAGHTYHFLVRAI 112
W A+P +T G +Y F VRA+
Sbjct: 61 ----VGDWILA--TSAIPPSRLSVEITGLEKGISYKFRVRAL 96
>2crz_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 110
Score = 25.4 bits (56), Expect = 4.1
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 11/88 (12%)
Query: 26 VPAAP-KLRVQLADAGKGIQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGK 84
P R+Q K IQL W + I Y + E P+ + + +
Sbjct: 8 PPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSV----EMS--PIEKDEPREVYQ 61
Query: 85 LEALPLPMACTLTQFTAGHTYHFLVRAI 112
+ CT++ G TY F +RA
Sbjct: 62 GSE----VECTVSSLLPGKTYSFRLRAA 85
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 107
Score = 25.4 bits (56), Expect = 4.2
Identities = 14/89 (15%), Positives = 25/89 (28%), Gaps = 15/89 (16%)
Query: 26 VPAAPKLRVQLADAGKGIQLTWS--LDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIG 83
P P + + L W + + Y+L Y + +
Sbjct: 7 GPGRPTMMISTTAMNT-ALLQWHPPKELPG---ELLGYRLQ-YCR-----ADEARPN--- 53
Query: 84 KLEALPLPMACTLTQFTAGHTYHFLVRAI 112
++ T+T G TY F + A
Sbjct: 54 TIDFGKDDQHFTVTGLHKGTTYIFRLAAK 82
>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A
{Clostridium thermocellum}
Length = 103
Score = 25.4 bits (56), Expect = 4.3
Identities = 20/100 (20%), Positives = 29/100 (29%), Gaps = 16/100 (16%)
Query: 26 VPAAPK-LRVQLADAGKGIQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGK 84
PA P L L +G LTW+ SY + P + I
Sbjct: 4 APAFPTGLSAVLDSSGNTANLTWNAAP-----GANSYNVK-RSTKSGGP-----YTTIAT 52
Query: 85 LEALPLPMACTLTQFTAGHTYHFLVRAIDVYKRYSAFSNP 124
T T G Y+++V A+ + S
Sbjct: 53 NITST---NYTDTGVATGTKYYYVVSAVSNGV-ETLNSAE 88
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 25.1 bits (55), Expect = 6.0
Identities = 20/112 (17%), Positives = 34/112 (30%), Gaps = 14/112 (12%)
Query: 24 EMVPAAP-KLRVQLADAGKGIQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNI 82
P A +RV + + L W++ A+ Y++ +++ P + K
Sbjct: 5 SSGPPAVSDIRVTRSSP-SSLSLAWAVPRAPS-GAVLDYEVKYHEKGAEGPSSVRFLKTS 62
Query: 83 GKLEALPLPMACTLTQFTAGHTYHFLVRAIDVYKRYSAFSNPGTIHLRTPAT 134
L G +Y VRA Y F H +T
Sbjct: 63 E--------NRAELRGLKRGASYLVQVRARSE-AGYGPFGQE--HHSQTQLD 103
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III
module, beta-sheet sandwich, cell membrane,
glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Length = 114
Score = 25.2 bits (55), Expect = 6.2
Identities = 15/108 (13%), Positives = 28/108 (25%), Gaps = 14/108 (12%)
Query: 26 VPAAPKLRVQLADAGKGIQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGKL 85
P+ P + Q + K +L+ + A I Y + ++ K+
Sbjct: 8 EPSPPSIHGQPSSG-KSFKLSIT-KQDDGGAPILEYIVKYRSKD------KEDQWLEKKV 59
Query: 86 EALPLPMACTLTQFTAGHTYHFLVRAIDVYKRYSAFSNPGTIHLRTPA 133
+ L Y + A + S P P
Sbjct: 60 Q--GNKDHIILEHLQWTMGYEVQITAANRLGY----SEPTVYEFSMPP 101
>2p4f_A Similar to SP|P32453 saccharomyces cerevisiae YNL ATP11; half
barrel, chaperone; HET: P6G; 1.40A {Candida glabrata cbs
138}
Length = 299
Score = 25.5 bits (55), Expect = 6.2
Identities = 13/56 (23%), Positives = 27/56 (48%)
Query: 72 VPVNSSLWKNIGKLEALPLPMACTLTQFTAGHTYHFLVRAIDVYKRYSAFSNPGTI 127
+P ++ N +++P+ + QF +T H L+ ++ YK + F+ P T
Sbjct: 161 LPRENAADGNKADKDSVPVELQYVQWQFAGPNTVHCLITSLAEYKLHQDFAKPHTT 216
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 112
Score = 25.0 bits (55), Expect = 7.0
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 94 CTLTQFTAGHTYHFLVRAIDVYKRYSAFSNP 124
T++ T Y F V A + S S P
Sbjct: 70 FTVSGLTEDAAYEFRVIAKNAAGAISPPSEP 100
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain,
structural genomics., NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 24.6 bits (54), Expect = 7.9
Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 11/88 (12%)
Query: 26 VPAAPKLRVQLADAGK-GIQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGK 84
P P+ V++ D + LTW+ AAI Y + S W +
Sbjct: 17 RPGPPQ-IVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKAD------KKSMEWFTVI- 68
Query: 85 LEALPLPMACTLTQFTAGHTYHFLVRAI 112
+ T+T+ G+ Y+F V +
Sbjct: 69 --EHYHRTSATITELVIGNEYYFRVFSE 94
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.130 0.388
Gapped
Lambda K H
0.267 0.0670 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,075,650
Number of extensions: 108554
Number of successful extensions: 277
Number of sequences better than 10.0: 1
Number of HSP's gapped: 273
Number of HSP's successfully gapped: 104
Length of query: 138
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 54
Effective length of database: 4,356,429
Effective search space: 235247166
Effective search space used: 235247166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.9 bits)