RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy816
(138 letters)
>d1uena_ b.1.2.1 (A:) KIAA0343 protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 125
Score = 32.2 bits (72), Expect = 0.007
Identities = 14/110 (12%), Positives = 26/110 (23%), Gaps = 4/110 (3%)
Query: 24 EMVPAAPKLRVQLADAGK-GIQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNI 82
E +P V++ ++ W + Y + ++ +
Sbjct: 11 EDLPMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEK 70
Query: 83 GKLEALPLPMACTLTQFTAGHTYHFLVRAIDVYKRYSAFSNPGTIHLRTP 132
L L Y VR ++ K S TP
Sbjct: 71 KILTFQGSKTHGMLPGLEPFSHYTLNVRVVNG-KGEGPASPD--RVFNTP 117
>d3d48r2 b.1.2.1 (R:101-204) Prolactin receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 104
Score = 29.6 bits (65), Expect = 0.045
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 92 MACTLTQFTAGHTYHFLVRAIDVYKRYSAFSNPGTIHLRTPA 133
+ G Y VR + +SA+S ++ P+
Sbjct: 65 TEFKILSLHPGQKYLVQVRCKPDHGYWSAWSPA--TFIQIPS 104
>d1k85a_ b.1.2.1 (A:) Fibronectin type III domain from chitinase A1.
{Bacillus circulans [TaxId: 1397]}
Length = 88
Score = 28.2 bits (62), Expect = 0.13
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 94 CTLTQFTAGHTYHFLVRAIDVYKRYSAFSNPGTI 127
T++ A +Y F V+A D SA SN ++
Sbjct: 53 ATISGLAADTSYTFTVKAKDAAGNVSAASNAVSV 86
>d1fnaa_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human
(Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 28.2 bits (62), Expect = 0.15
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 94 CTLTQFTAGHTYHFLVRAIDVYKRYSAFSNPGTIHLRT 131
T++ G Y V A+ A S P +I+ RT
Sbjct: 52 ATISGLKPGVDYTITVYAVTGRGDSPASSKPISINYRT 89
>d1x5ka1 b.1.2.1 (A:8-118) Neogenin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 28.0 bits (61), Expect = 0.24
Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 13/113 (11%)
Query: 23 YEMVPAAP--KLRVQLADAGKG-IQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLW 79
+E+VP +P + V + I + W + I Y +Y + ++
Sbjct: 7 FELVPTSPPKDVTVVSKEGKPKTIIVNWQ-PPSEANGKITGYIIYYSTDV------NAEI 59
Query: 80 KNIGKLEALPLPMACTLTQFTAGHTYHFLVRAIDVYKRYSAFSNPGTIHLRTP 132
+ + + + + T Y+F ++A + S + RTP
Sbjct: 60 HDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKG-MGPMSEA--VQFRTP 109
>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 106
Score = 27.6 bits (60), Expect = 0.28
Identities = 7/42 (16%), Positives = 13/42 (30%), Gaps = 3/42 (7%)
Query: 92 MACTLTQFTAGHTYHFLVRAI-DVYKRYSAFSNPGTIHLRTP 132
+ + Y VR+ Y FS +++ P
Sbjct: 65 TSVPVYSLKVDKEYEVRVRSKQRNSGNYGEFSEV--LYVTLP 104
>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 103
Score = 26.9 bits (58), Expect = 0.48
Identities = 16/110 (14%), Positives = 29/110 (26%), Gaps = 16/110 (14%)
Query: 27 PAAPKLRVQLADAGKG-IQLTWSLDTTSDM---AAIESYQLYAYQENKNVPVNSSLWKNI 82
P L V+ K + + WS T +D+ Y++ E
Sbjct: 6 PRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEWEIHFTGHQ- 64
Query: 83 GKLEALPLPMACTLTQFTAGHTYHFLVRAIDVYKRYSAFSNPGTIHLRTP 132
+ G Y R + +S +S ++ P
Sbjct: 65 ---------TQFKVFDLYPGQKYLVQTRCKPDHGYWSRWSQESSV--EMP 103
>d1va9a1 b.1.2.1 (A:8-116) Down syndrome cell adhesion molecule-like
protein 1, DSCAML1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 26.0 bits (56), Expect = 1.0
Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 9/111 (8%)
Query: 24 EMVPAAPKLRVQLADAGKG-IQLTWS-LDTTSDMAAIESYQLYAYQENKNVPVNSSLWKN 81
E P P + V L IQ+TW I YQ + S+ +
Sbjct: 5 EAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQ----IGYRENSPGSNGQYS 60
Query: 82 IGKLEALPLPMACTLTQFTAGHTYHFLVRAIDVYKRYSAFSNPGTIHLRTP 132
I +++A TL Y +V+A + S+ I+ T
Sbjct: 61 IVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRA-GTGPSSSE--INATTL 108
>d1x5ya1 b.1.2.1 (A:8-105) Myosin binding protein C, fast-type
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 26.0 bits (56), Expect = 1.0
Identities = 16/104 (15%), Positives = 29/104 (27%), Gaps = 11/104 (10%)
Query: 27 PAAPKLRVQLADAGKG-IQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGKL 85
P + + + D L W I+ Y + E V ++
Sbjct: 1 PTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPAN-------- 52
Query: 86 EALPLPMACTLTQFTAGHTYHFLVRAIDVYKR--YSAFSNPGTI 127
+ T+ G F V +++ R + P TI
Sbjct: 53 KEPVERCGFTVKDLPTGARILFRVVGVNIAGRSEPATLLQPVTI 96
>d1uc6a_ b.1.2.1 (A:) Ciliary neurotrophic factor receptor alpha
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 26.1 bits (56), Expect = 1.0
Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 14/111 (12%)
Query: 27 PAAP-KLRVQLADAGKG-IQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGK 84
P P + + + +++TW +T ES+ L + + + ++ +
Sbjct: 8 PDPPENVVARPVPSNPRRLEVTWQTPSTWPD--PESFPLKFFLRYRPLILDQWQHVELSN 65
Query: 85 LEALPLPMACTLTQFTAGHTYHFLVRAIDVYK-RYSAFSNPGTIHLRTPAT 134
A T+T AG Y V A D +S +S TP T
Sbjct: 66 ------GTAHTITDAYAGKEYIIQVAAKDNEIGTWSDWSVAAHA---TPWT 107
>d2crma1 b.1.2.1 (A:8-114) Fibronectin type-III domain containing
protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 107
Score = 26.1 bits (56), Expect = 1.1
Identities = 20/109 (18%), Positives = 31/109 (28%), Gaps = 13/109 (11%)
Query: 26 VPAAPKLRVQLADAGK-GIQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGK 84
P P ++TW + A I Y + N + W+ I
Sbjct: 10 KPGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVE-----MAEGSNGNKWEMIYS 64
Query: 85 LEALPLPMACTLTQFTAGHTYHFLVRAIDVYKRYSAFSNPGTIHLRTPA 133
+ G Y V I + SA S + ++TPA
Sbjct: 65 ----GATREHLCDRLNPGCFYRLRVYCISDGGQ-SAVSES--LLVQTPA 106
>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 25.8 bits (55), Expect = 1.1
Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 6/104 (5%)
Query: 27 PAAPKLRVQLADAGKGIQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGKLE 86
P AP + + L + + ++ YA N+ LE
Sbjct: 2 PRAPG-NLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLE 60
Query: 87 ALPLPMACTLTQFTAGHTYHFLVRAIDVYKR--YSAFSNPGTIH 128
+ + +G +Y VRA +S +S H
Sbjct: 61 P---SLRIAASTLKSGISYRARVRAWAQAYNTTWSEWSPSTKWH 101
>d1x5xa1 b.1.2.1 (A:8-103) Fibronectin type-III domain containing
protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 25.8 bits (55), Expect = 1.2
Identities = 20/99 (20%), Positives = 29/99 (29%), Gaps = 12/99 (12%)
Query: 27 PAAPKLRVQLADAGK-GIQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGKL 85
P+ P L AG + L WS + + SY L +E
Sbjct: 1 PSMPA-SPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGE---- 55
Query: 86 EALPLPMACTLTQFTAGHTYHFLVRAIDVYKRYSAFSNP 124
+A T+ Y F V A + + S S
Sbjct: 56 -----DLAYTVKNLRRSTKYKFKVIAYNSEGK-SNPSEV 88
>d1bpva_ b.1.2.1 (A:) Type I titin module {Human (Homo sapiens)
[TaxId: 9606]}
Length = 104
Score = 25.7 bits (55), Expect = 1.4
Identities = 19/108 (17%), Positives = 32/108 (29%), Gaps = 10/108 (9%)
Query: 27 PAAPKLRVQLADAGKG-IQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGKL 85
P P + + + + L W+ + I SY + + ++
Sbjct: 2 PIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSN----- 56
Query: 86 EALPLPMACTLTQFTAGHTYHFLVRAIDVYKRYSAFSNP-GTIHLRTP 132
L T++ T Y F V A + S S P I R
Sbjct: 57 ---ILENEFTVSGLTEDAAYEFRVIAKNAAGAISPPSEPSDAITCRDD 101
>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 92
Score = 25.2 bits (54), Expect = 1.6
Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 14/89 (15%)
Query: 43 IQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGKLEALPLPMACTLTQFTAG 102
+ L W Y + + + + + TLT G
Sbjct: 17 LDLEWDNSEAEAQEYKVVYS----------TLAGEQYHEVLVPKGIGPTTKTTLTDLVPG 66
Query: 103 HTYHFLVRAIDVYKRYSAFSNPGTIHLRT 131
Y + A+ K+ S P T++ RT
Sbjct: 67 TEYGVGISAVMNSKQ----SIPATMNART 91
>d1wisa1 b.1.2.1 (A:8-118) Sidekick 2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 25.3 bits (54), Expect = 1.8
Identities = 15/99 (15%), Positives = 30/99 (30%), Gaps = 5/99 (5%)
Query: 26 VPAAPKLRVQLADAGKGIQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGKL 85
+P P + +++ G +I + + A W I +L
Sbjct: 10 LPGPPT-NLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVG---EGEEWLLIHQL 65
Query: 86 EALPLPMACTLTQFTAGHTYHFLVRAIDVYKRYSAFSNP 124
P + + Y F +R +++ S S P
Sbjct: 66 SNEPDARSMEVPDLNPFTCYSFRMRQVNIVGT-SPPSQP 103
>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 108
Score = 25.2 bits (54), Expect = 1.9
Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 12/101 (11%)
Query: 26 VPAAP-KLRVQLADAGKG-IQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIG 83
+P AP L+ + I LTW+ + I + + +S+
Sbjct: 10 LPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENNAPWTVLLASVDPK-- 67
Query: 84 KLEALPLPMACTLTQFTAGHTYHFLVRAIDVYKRYSAFSNP 124
+ T+ +Y F + A++ + FS
Sbjct: 68 -------ATSVTVKGLVPARSYQFRLCAVNDVGK-GQFSKD 100
>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 88
Score = 24.5 bits (52), Expect = 2.5
Identities = 13/89 (14%), Positives = 29/89 (32%), Gaps = 17/89 (19%)
Query: 43 IQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGKLEALPLPMACTLTQFTAG 102
++W+ + + SY V V+ S + L + G
Sbjct: 17 ATVSWTPPRSRVDSYRVSYVPITGGTPNVVTVDGSKTR-------------TKLVKLVPG 63
Query: 103 HTYHFLVRAIDVYKRYSAFSNPGTIHLRT 131
Y+ + ++ ++ S P + L+T
Sbjct: 64 VDYNVNIISVKGFEE----SEPISGILKT 88
>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3
and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}
Length = 100
Score = 24.6 bits (52), Expect = 3.3
Identities = 5/28 (17%), Positives = 6/28 (21%)
Query: 94 CTLTQFTAGHTYHFLVRAIDVYKRYSAF 121
L Y VR Y+
Sbjct: 63 MALPALEPSTRYWARVRVRTSRTGYNGI 90
>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules
{Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 24.1 bits (51), Expect = 3.6
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 94 CTLTQFTAGHTYHFLVRAIDVYKRYSAFSNPGTIHLRT 131
T+T G Y V A+ ++ S P +T
Sbjct: 56 ATITGLEPGTEYTIYVIALKNNQK----SEPLIGRKKT 89
>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 98
Score = 24.0 bits (51), Expect = 4.1
Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 13/110 (11%)
Query: 24 EMVPAAPKLRVQLADAGKG-IQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNI 82
+ P+ + ++ AG+ + L W + I Y++ Y+++K + S+L
Sbjct: 1 QAAPSQV-VVIRQERAGQTSVSLLWQ-EPEQPNGIILEYEIKYYEKDKEMQSYSTLK--- 55
Query: 83 GKLEALPLPMACTLTQFTAGHTYHFLVRAIDVYKRYSAFSNPGTIHLRTP 132
+ T++ G Y F VRA FS + P
Sbjct: 56 ------AVTTRATVSGLKPGTRYVFQVRARTSAG-CGRFSQAMEVETGKP 98
>d2ic2a1 b.1.2.1 (A:466-572) Hedgehog receptor iHog {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 107
Score = 23.9 bits (50), Expect = 5.5
Identities = 15/101 (14%), Positives = 34/101 (33%), Gaps = 7/101 (6%)
Query: 27 PAAPKLRVQLADAGKGIQLTWSLDTTSDMAAIES---YQLYAYQENKNVPVNSSLWKNIG 83
P P + ++ + L W + + + Y++ ++N ++ +
Sbjct: 3 PTPPNVTRLSDES---VMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPK 59
Query: 84 KLEALPLPMACTLTQFTAGHTYHFLVRAIDVYKRYSAFSNP 124
L ++T HTY F + A+ + SN
Sbjct: 60 WNSELGKSFTASVTDLKPQHTYRFRILAVYSNND-NKESNT 99
>d1x5za1 b.1.2.1 (A:8-109) Receptor-type tyrosine-protein
phosphatase delta, PTPRD {Human (Homo sapiens) [TaxId:
9606]}
Length = 102
Score = 23.9 bits (51), Expect = 5.6
Identities = 8/41 (19%), Positives = 12/41 (29%), Gaps = 3/41 (7%)
Query: 94 CTLTQFTAGHTYHFLVRAIDVYKRYSAFSNPGTIHLRTPAT 134
L Y+F + A A + I RT +
Sbjct: 65 YRLQGLKPNSLYYFRLAARSPQG-LGASTAE--ISARTMQS 102
>d2crza1 b.1.2.1 (A:8-104) Fibronectin type-III domain containing
protein 3a, FNDC3A (KIAA0970) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 23.3 bits (49), Expect = 7.7
Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 13/101 (12%)
Query: 27 PAAPKLRVQLADAGKGIQLTWSLDTTSDMAAIESYQLYAYQENKNVPVNSSLWKNIGKLE 86
P+L+ + K IQL W + I Y + K+ P
Sbjct: 5 CLPPRLQGRPKA--KEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSE----- 57
Query: 87 ALPLPMACTLTQFTAGHTYHFLVRAIDVYKRYSAFSNPGTI 127
+ CT++ G TY F +RA + + FS I
Sbjct: 58 -----VECTVSSLLPGKTYSFRLRAANKMG-FGPFSEKCDI 92
>d1wfoa1 b.1.2.1 (A:8-124) Sidekick 2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 117
Score = 23.7 bits (50), Expect = 8.2
Identities = 16/115 (13%), Positives = 30/115 (26%), Gaps = 9/115 (7%)
Query: 13 PSVSNVVGAMYEMVPAAPKLRVQLADAGKGIQLTWSLDTTSDMAAIESYQLYAYQENKNV 72
PS ++ + VP P + ++L W + I +YQ+
Sbjct: 7 PSHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQ-PPAAPNGIILAYQITHRLNTTTA 65
Query: 73 PVNSSLWKNIGKLEALPLPMACTLTQFTAGHTYHFLVRAIDVYKRYSAFSNPGTI 127
+ P T T Y F + A + + +
Sbjct: 66 NTATVEVLA-------PSARQYTATGLKPESVYLFRITAQTRKG-WGEAAEALVV 112
>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId:
9606]}
Length = 93
Score = 23.2 bits (49), Expect = 9.1
Identities = 5/38 (13%), Positives = 11/38 (28%), Gaps = 4/38 (10%)
Query: 94 CTLTQFTAGHTYHFLVRAIDVYKRYSAFSNPGTIHLRT 131
L +Y+ ++A+ P + T
Sbjct: 55 HQLLGLFPSTSYNARLQAMWGQSL----LPPVSTSFTT 88
>d1x4za1 b.1.2.1 (A:8-115) Brother of CDO precursor (BOC) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 108
Score = 23.2 bits (49), Expect = 9.4
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 94 CTLTQFTAGHTYHFLVRAIDVYKR--YSAFSNPGTI 127
+T G +Y F VRA+++ SA S P +
Sbjct: 71 VEITGLEKGISYKFRVRALNMLGESEPSAPSRPYVV 106
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.130 0.388
Gapped
Lambda K H
0.267 0.0417 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 494,331
Number of extensions: 20336
Number of successful extensions: 86
Number of sequences better than 10.0: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 51
Length of query: 138
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 62
Effective length of database: 1,364,116
Effective search space: 84575192
Effective search space used: 84575192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)