BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8160
(324 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 77/166 (46%), Gaps = 23/166 (13%)
Query: 100 YDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK 159
YD AL+ +D+S T + +++ V+ YK AKD +E+ L+
Sbjct: 80 YDKALE------LDSSAAT-----AYYGAGNVYVVKEMYKEAKDMFEKALR--------- 119
Query: 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHD 219
+ G +++ + T+ K + LA+ LQ+++E + ++ + G C A G + +
Sbjct: 120 --AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177
Query: 220 AFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDL 265
A + E+ G+AD + + G ++ NRE + L+K D+
Sbjct: 178 ALSQFAAVTEQDPGHADAFYNAG-VTYAYKENREKALEMLDKAIDI 222
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245
AI QK++E DP+S ++ Y LG + G +A Y+ ++E +A+ W ++GN
Sbjct: 20 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 79
Query: 246 FSNNSNREDYHQALNKYR 263
+ DY +A+ Y+
Sbjct: 80 YKQG----DYDEAIEYYQ 93
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245
AI QK++E DP+S ++ Y LG + G +A Y+ ++E +A+ W ++GN
Sbjct: 54 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 113
Query: 246 FSNNSNREDYHQALNKYR 263
+ DY +A+ Y+
Sbjct: 114 YKQG----DYDEAIEYYQ 127
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 15/139 (10%)
Query: 91 GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLK 150
G + +YD A+++ L + P + E +++ + + Q Y A + Y++ L+
Sbjct: 8 GNAYYKQGDYDEAIEYYQKAL-ELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 151 EDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRC 210
D A+ LG Y+ E AI QK++E DP+S ++ Y LG
Sbjct: 64 LD----PRSAEAWYNLGNAYYKQGDYDE-------AIEYYQKALELDPRSAEAWYNLGNA 112
Query: 211 FAAVGKVHDAFLAYRNSVE 229
+ G +A Y+ ++E
Sbjct: 113 YYKQGDYDEAIEYYQKALE 131
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 61/150 (40%), Gaps = 16/150 (10%)
Query: 52 EVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLC 110
E LG + +YD A+++ L +D G + +YD A+++
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Query: 111 LIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMY 170
L + P + E +++ + + Q Y A + Y++ L+ D A+ LG Y
Sbjct: 62 L-ELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELD----PRSAEAWYNLGNAY 113
Query: 171 HCIDTLGEKSHRETLAIHCLQKSIEADPKS 200
+ E AI QK++E DP+S
Sbjct: 114 YKQGDYDE-------AIEYYQKALELDPRS 136
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245
AI QK++E DP + ++ Y LG + G +A Y+ ++E NA+ W ++GN
Sbjct: 28 AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87
Query: 246 FSNNSNREDYHQALNKYR 263
+ + DY +A+ Y+
Sbjct: 88 YK----QGDYDEAIEYYQ 101
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 56/121 (46%), Gaps = 11/121 (9%)
Query: 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHR 182
E +++ + + Q Y A + Y++ L+ D P + A+ LG Y+ E
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNN--AEAWYNLGNAYYKQGDYDE---- 61
Query: 183 ETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
AI QK++E DP + ++ Y LG + G +A Y+ ++E NA+ ++G
Sbjct: 62 ---AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 118
Query: 243 N 243
N
Sbjct: 119 N 119
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 197 DP-KSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDY 255
DP S ++ Y LG + G +A Y+ ++E NA+ W ++GN + + DY
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK----QGDY 59
Query: 256 HQALNKYR 263
+A+ Y+
Sbjct: 60 DEAIEYYQ 67
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245
AI QK++E P + ++ Y LG + G +A Y+ ++E NA+ W ++GN
Sbjct: 28 AIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAY 87
Query: 246 FSNNSNREDYHQALNKYR 263
+ + DY +A+ Y+
Sbjct: 88 YK----QGDYDEAIEYYQ 101
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
AI QK++E P + ++ Y LG + G +A Y+ ++E NA+ ++GN
Sbjct: 62 AIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGN 119
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 197 DP-KSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDY 255
DP S ++ Y LG + G +A Y+ ++E NA+ W ++GN + + DY
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYK----QGDY 59
Query: 256 HQALNKYR 263
+A+ Y+
Sbjct: 60 DEAIEYYQ 67
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245
AI QK++E DP + + Y LG + G A Y+ ++E NA W GN
Sbjct: 28 AIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAY 87
Query: 246 FSNNSNR---EDYHQAL 259
+ + EDY +AL
Sbjct: 88 YKQGDYQKAIEDYQKAL 104
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
AI QK++E DP + ++ Y G + G A Y+ ++E NA ++GN
Sbjct: 62 AIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGN 119
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 35.0 bits (79), Expect = 0.060, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
AI QK++E DP + ++ Y LG + G +A Y+ ++E NA+ ++GN
Sbjct: 28 AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85
Score = 32.3 bits (72), Expect = 0.39, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 197 DP-KSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDY 255
DP S ++ Y LG + G +A Y+ ++E NA+ W ++GN + DY
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG----DY 59
Query: 256 HQALNKYR 263
+A+ Y+
Sbjct: 60 DEAIEYYQ 67
>pdb|2E2E|A Chain A, Tpr Domain Of Nrfg Mediates The Complex Formation Between
Heme Lyase And Formate-Dependent Nitrite Reductase In
Escherichia Coli O157:h7
pdb|2E2E|B Chain B, Tpr Domain Of Nrfg Mediates The Complex Formation Between
Heme Lyase And Formate-Dependent Nitrite Reductase In
Escherichia Coli O157:h7
Length = 177
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 187 IHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
+ LQ I A+P++ + LLG + ++ LAYR +++ NA+ + ++
Sbjct: 30 LQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALA 85
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 34/61 (55%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245
AI +K ++ADP + ++L LG+ + +G +DA + + V +A+ + +G+ +
Sbjct: 24 AIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN 83
Query: 246 F 246
F
Sbjct: 84 F 84
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
AI LQ++I + + Y LG + ++G+ A AY ++ G + SIG
Sbjct: 92 AIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIG 148
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 31.6 bits (70), Expect = 0.58, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVE 229
AI QK++E DP+S ++ Y LG + G +A Y+ ++E
Sbjct: 22 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 65
Score = 29.3 bits (64), Expect = 3.2, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 200 SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259
S ++ Y LG + G +A Y+ ++E +A+ W ++GN + DY +A+
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG----DYDEAI 57
Query: 260 NKYR 263
Y+
Sbjct: 58 EYYQ 61
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
A+ +K++E P+ + L GK+ +A + Y+ ++ S AD + ++GN
Sbjct: 28 AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 85
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
A+ +K++E P+ + L GK+ +A + Y+ ++ S AD + ++GN
Sbjct: 324 AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381
>pdb|2ZC8|A Chain A, Crystal Structure Of N-Acylamino Acid Racemase From
Thermus Thermophilus Hb8
pdb|2ZC8|B Chain B, Crystal Structure Of N-Acylamino Acid Racemase From
Thermus Thermophilus Hb8
Length = 369
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 33/122 (27%)
Query: 126 FHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCID---TLGEKS-- 180
+ +A+L +++R + D EQ L DDL H A + R+L C+D T EK+
Sbjct: 193 YSLANLAQLKRLDELRLDYIEQPLAYDDLLDH--AKLQRELS-TPICLDESLTGAEKARK 249
Query: 181 -------------------HRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAF 221
H E+L +H L +S +G L++ G A VG+ H+
Sbjct: 250 AIELGAGRVFNVKPARLGGHGESLRVHALAES------AGIPLWMGGMLEAGVGRAHNLH 303
Query: 222 LA 223
LA
Sbjct: 304 LA 305
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,097,095
Number of Sequences: 62578
Number of extensions: 367075
Number of successful extensions: 915
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 881
Number of HSP's gapped (non-prelim): 32
length of query: 324
length of database: 14,973,337
effective HSP length: 99
effective length of query: 225
effective length of database: 8,778,115
effective search space: 1975075875
effective search space used: 1975075875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)