BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8160
(324 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O70546|KDM6A_MOUSE Lysine-specific demethylase 6A OS=Mus musculus GN=Kdm6a PE=1 SV=2
Length = 1401
Score = 237 bits (605), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 146/210 (69%), Gaps = 33/210 (15%)
Query: 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGL 92
AIK FQ++LYVDPS+ RA E+HLRLGLM
Sbjct: 151 AIKAFQEVLYVDPSFCRAKEIHLRLGLM-------------------------------- 178
Query: 93 MFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152
FKVN +Y+S+LKH L L+D +PCT + E++FHIAHL+E QRKY +AK++YEQLL+ +
Sbjct: 179 -FKVNTDYESSLKHFQLALVDCNPCTLSNAEIQFHIAHLYETQRKYHSAKEAYEQLLQTE 237
Query: 153 DLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFA 212
+L +KA I +QLGWM+H +D LG+K+ +E+ AI LQKS+EADP SGQS Y LGRC++
Sbjct: 238 NLSAQVKATILQQLGWMHHTVDLLGDKATKESYAIQYLQKSLEADPNSGQSWYFLGRCYS 297
Query: 213 AVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
++GKV DAF++YR S++KSE +ADTWCSIG
Sbjct: 298 SIGKVQDAFISYRQSIDKSEASADTWCSIG 327
>sp|O15550|KDM6A_HUMAN Lysine-specific demethylase 6A OS=Homo sapiens GN=KDM6A PE=1 SV=2
Length = 1401
Score = 236 bits (603), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 108/210 (51%), Positives = 146/210 (69%), Gaps = 33/210 (15%)
Query: 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGL 92
AIK FQ++LYVDPS+ RA E+HLRLGLM
Sbjct: 149 AIKAFQEVLYVDPSFCRAKEIHLRLGLM-------------------------------- 176
Query: 93 MFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152
FKVN +Y+S+LKH L L+D +PCT + E++FHIAHL+E QRKY +AK++YEQLL+ +
Sbjct: 177 -FKVNTDYESSLKHFQLALVDCNPCTLSNAEIQFHIAHLYETQRKYHSAKEAYEQLLQTE 235
Query: 153 DLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFA 212
+L +KA + +QLGWM+H +D LG+K+ +E+ AI LQKS+EADP SGQS Y LGRC++
Sbjct: 236 NLSAQVKATVLQQLGWMHHTVDLLGDKATKESYAIQYLQKSLEADPNSGQSWYFLGRCYS 295
Query: 213 AVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
++GKV DAF++YR S++KSE +ADTWCSIG
Sbjct: 296 SIGKVQDAFISYRQSIDKSEASADTWCSIG 325
>sp|O14607|UTY_HUMAN Histone demethylase UTY OS=Homo sapiens GN=UTY PE=1 SV=2
Length = 1347
Score = 235 bits (600), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 109/210 (51%), Positives = 145/210 (69%), Gaps = 33/210 (15%)
Query: 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGL 92
AIK FQ +LYVDPS+ RA E+HLRLGLM
Sbjct: 146 AIKAFQDVLYVDPSFCRAKEIHLRLGLM-------------------------------- 173
Query: 93 MFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152
FKVN +Y S+LKH L LID +PCT + E++FHIAHL+E QRKY +AK++YEQLL+ +
Sbjct: 174 -FKVNTDYKSSLKHFQLALIDCNPCTLSNAEIQFHIAHLYETQRKYHSAKEAYEQLLQTE 232
Query: 153 DLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFA 212
+LP +KA + +QLGWM+H +D +G+K+ +E+ AI LQKS+EADP SGQS Y LGRC++
Sbjct: 233 NLPAQVKATVLQQLGWMHHNMDLVGDKATKESYAIQYLQKSLEADPNSGQSWYFLGRCYS 292
Query: 213 AVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
++GKV DAF++YR S++KSE +ADTWCSIG
Sbjct: 293 SIGKVQDAFISYRQSIDKSEASADTWCSIG 322
>sp|Q6B4Z3|UTY_PANTR Histone demethylase UTY OS=Pan troglodytes GN=UTY PE=2 SV=1
Length = 1079
Score = 234 bits (596), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 108/210 (51%), Positives = 145/210 (69%), Gaps = 33/210 (15%)
Query: 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGL 92
AIK FQ +LYVDPS+ RA E+HLRLGLM
Sbjct: 146 AIKAFQDVLYVDPSFCRAKEIHLRLGLM-------------------------------- 173
Query: 93 MFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152
FKVN +Y S+LKH L LID +PCT + E++FHIAHL+E QRKY +AK++YEQLL+ +
Sbjct: 174 -FKVNTDYKSSLKHFQLALIDCNPCTLSSAEIQFHIAHLYETQRKYHSAKEAYEQLLQTE 232
Query: 153 DLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFA 212
+LP +KA + +QLGWM+H +D +G+K+ +E+ AI LQKS+EADP SGQS Y LGRC++
Sbjct: 233 NLPAQVKATVLQQLGWMHHNMDLVGDKATKESYAIPYLQKSLEADPNSGQSWYFLGRCYS 292
Query: 213 AVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
++GKV DAF++YR S+++SE +ADTWCSIG
Sbjct: 293 SIGKVQDAFVSYRQSIDRSEASADTWCSIG 322
>sp|P79457|UTY_MOUSE Histone demethylase UTY OS=Mus musculus GN=Uty PE=1 SV=2
Length = 1212
Score = 220 bits (560), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 102/210 (48%), Positives = 140/210 (66%), Gaps = 33/210 (15%)
Query: 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGL 92
AI+ FQ++LYVDP++ RA E+HLRLG MF
Sbjct: 144 AIRAFQEVLYVDPNFCRAKEIHLRLGFMF------------------------------- 172
Query: 93 MFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152
K+N +Y+S+LKH L LID + CT + +E++FHIAHL+E QRKY +AK +YEQLL+ +
Sbjct: 173 --KMNTDYESSLKHFQLALIDCNVCTLSSVEIQFHIAHLYETQRKYHSAKAAYEQLLQIE 230
Query: 153 DLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFA 212
LP +KA + +QLGWM+H +D +G+ + +E AI LQKS+E DP SGQS Y LGRC++
Sbjct: 231 SLPSQVKATVLQQLGWMHHNMDLIGDNTTKERYAIQYLQKSLEEDPNSGQSWYFLGRCYS 290
Query: 213 AVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
+GKV DAF++YR S++KSE +ADTWCSIG
Sbjct: 291 CIGKVQDAFVSYRQSIDKSEASADTWCSIG 320
>sp|O60184|CYC8_SCHPO General transcriptional corepressor ssn6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ssn6 PE=1 SV=1
Length = 1102
Score = 110 bits (274), Expect = 2e-23, Method: Composition-based stats.
Identities = 71/230 (30%), Positives = 114/230 (49%), Gaps = 45/230 (19%)
Query: 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGL 92
A + F Q L +DP++ + NE++ RLG+++K +++ +L+
Sbjct: 457 AEEAFMQCLRMDPNFEKVNEIYFRLGIIYKQQHKFAQSLE-------------------- 496
Query: 93 MFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152
+H+ +D P T L++ F I H++E +++YK AK++YE++L E
Sbjct: 497 ----------LFRHI----LDNPPKPLTVLDIYFQIGHVYEQRKEYKLAKEAYERVLAET 542
Query: 153 DLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFA 212
P H A + +QLGW+ H + LAI L KS+EAD QS YL+GRC+
Sbjct: 543 --PNH--AKVLQQLGWLCH---QQSSSFTNQDLAIQYLTKSLEADDTDAQSWYLIGRCYV 595
Query: 213 AVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKY 262
A K + A+ AY+ +V + N WCSIG + N Y AL+ Y
Sbjct: 596 AQQKYNKAYEAYQQAVYRDGRNPTFWCSIGVLYYQINQ----YQDALDAY 641
Score = 34.7 bits (78), Expect = 0.92, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 17/124 (13%)
Query: 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKED--DLPVHLKADICRQLGWMYHCIDTLGEKS 180
E I L E+ A +YE L+++ +P L+ I T+
Sbjct: 335 ETWIQIGRLAELFDDQDKALSAYESALRQNPYSIPAMLQ-------------IATILRNR 381
Query: 181 HRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVE--KSEGNADTW 238
+ LAI Q ++ DPK G+ LG C+ + A+ AYR ++ K + W
Sbjct: 382 EQFPLAIEYYQTILDCDPKQGEIWSALGHCYLMQDDLSRAYSAYRQALYHLKDPKDPKLW 441
Query: 239 CSIG 242
IG
Sbjct: 442 YGIG 445
>sp|O77033|CYC8_DICDI General transcriptional corepressor trfA OS=Dictyostelium
discoideum GN=trfA PE=2 SV=1
Length = 1390
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 114/216 (52%), Gaps = 16/216 (7%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-----IDASPCTF 86
KA +QQ LY P+ N + +G+++ YD A + T L + S +
Sbjct: 257 KAYTAYQQALYHLPNPKDPN-LWYGIGILYDRYGSYDHAEEAFTAVLKMDNKFEKSTEIY 315
Query: 87 TKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYE 146
+L G+++K +YD +L++ L+ P T ++ F I H++E+Q++Y +KD+YE
Sbjct: 316 FRL-GVLYKHQGKYDQSLEYFQ-HLVKNPPLPLTTSDIWFQIGHVYELQKEYHKSKDAYE 373
Query: 147 QLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYL 206
++LK D H K + +QLGW+YH + + AI+ L +SI++D Q+ YL
Sbjct: 374 KVLK--DNATHSK--VLQQLGWLYHHNPLFTNQEY----AINYLMRSIDSDSSDAQTWYL 425
Query: 207 LGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
LGRC+ K A+ AY+ +V + N WCSIG
Sbjct: 426 LGRCYMTQQKYKKAYDAYQQAVYRDGRNPTFWCSIG 461
>sp|P14922|CYC8_YEAST General transcriptional corepressor CYC8 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=CYC8 PE=1
SV=2
Length = 966
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 94/210 (44%), Gaps = 41/210 (19%)
Query: 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGL 92
A + F ++L +DP + +ANE++ RLG+++K ++ AL+ C
Sbjct: 169 AEEAFAKVLELDPHFEKANEIYFRLGIIYKHQGKWSQALE-----------C-------- 209
Query: 93 MFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152
F+ ++ P + ++ F + + E +++ AK++YE +L ++
Sbjct: 210 -FRY--------------ILPQPPAPLQEWDIWFQLGSVLESMGEWQGAKEAYEHVLAQN 254
Query: 153 DLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFA 212
A + +QLG +Y + + + A+ L KS+EADP + Y LGR
Sbjct: 255 ----QHHAKVLQQLGCLYGMSNV---QFYDPQKALDYLLKSLEADPSDATTWYHLGRVHM 307
Query: 213 AVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
A+ A++ +V + N WCSIG
Sbjct: 308 IRTDYTAAYDAFQQAVNRDSRNPIFWCSIG 337
>sp|O34452|YRRB_BACSU TPR repeat-containing protein YrrB OS=Bacillus subtilis (strain
168) GN=yrrB PE=1 SV=1
Length = 206
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 77/166 (46%), Gaps = 23/166 (13%)
Query: 100 YDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK 159
YD AL+ +D+S T + +++ V+ YK AKD +E+ L+
Sbjct: 47 YDKALE------LDSSAAT-----AYYGAGNVYVVKEMYKEAKDMFEKALR--------- 86
Query: 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHD 219
+ G +++ + T+ K + LA+ LQ+++E + ++ + G C A G + +
Sbjct: 87 --AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 144
Query: 220 AFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDL 265
A + E+ G+AD + + G ++ NRE + L+K D+
Sbjct: 145 ALSQFAAVTEQDPGHADAFYNAGVT-YAYKENREKALEMLDKAIDI 189
>sp|Q5CZ52|BBS4_CAEEL Bardet-Biedl syndrome 4 protein homolog OS=Caenorhabditis elegans
GN=F58A4.14 PE=3 SV=2
Length = 462
Score = 38.9 bits (89), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 18/106 (16%)
Query: 162 ICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAF 221
+C +LG DT G AI + S++ P + + + LLG + G+V + F
Sbjct: 208 LCEELG------DTSG--------AIAAYKSSLKLQPDNTEVMNLLGLIYLRTGQVQEGF 253
Query: 222 LAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGD 267
+ N + N+ +IG S N D+ ALNKYR D
Sbjct: 254 VQLGNCLAYDPANSQAILTIG----SIMQNHSDHDVALNKYRVAAD 295
>sp|Q9UJX3|APC7_HUMAN Anaphase-promoting complex subunit 7 OS=Homo sapiens GN=ANAPC7 PE=1
SV=4
Length = 599
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%)
Query: 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWC 239
S R + A++ K+I+ + S Q+L L G +G+V +A + +R ++ + D +
Sbjct: 352 SKRYSRALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAIRLAPCRLDCYE 411
Query: 240 SIGNKDFSNNSNREDYHQALNKYRDLG 266
+ ++NS RE A N Y+ LG
Sbjct: 412 GLIECYLASNSIREAMVMANNVYKTLG 438
>sp|Q9WVM3|APC7_MOUSE Anaphase-promoting complex subunit 7 OS=Mus musculus GN=Anapc7 PE=2
SV=3
Length = 565
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 44/87 (50%)
Query: 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWC 239
S R + A++ K+I+ + S Q+L L G +G+V +A + +R ++ + D +
Sbjct: 318 SKRYSRALYLGAKAIQLNSNSVQALLLKGAALRNMGRVQEAIIHFREAIRLAPCRLDCYE 377
Query: 240 SIGNKDFSNNSNREDYHQALNKYRDLG 266
+ ++NS RE A N Y+ LG
Sbjct: 378 GLIECYLASNSIREAMVMANNVYKTLG 404
>sp|A5IML2|SYI_THEP1 Isoleucine--tRNA ligase OS=Thermotoga petrophila (strain RKU-1 /
ATCC BAA-488 / DSM 13995) GN=ileS PE=3 SV=1
Length = 919
Score = 36.2 bits (82), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 4/93 (4%)
Query: 107 LTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQL 166
+ L I A TFT EV +HLHE RKYKT + Y KE+ + L D + L
Sbjct: 749 IALMKILAPIMTFTMEEV---YSHLHEKDRKYKTVQAEYWPEYKEEFIDRELMEDFEKLL 805
Query: 167 GWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK 199
+ L EK ++ + H L + PK
Sbjct: 806 SIREDVLKALEEKRQQDVIG-HSLDAEVVLVPK 837
>sp|Q58741|Y1345_METJA TPR repeat-containing protein MJ1345 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1345 PE=4 SV=1
Length = 314
Score = 35.4 bits (80), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 81/192 (42%), Gaps = 17/192 (8%)
Query: 30 NIKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKL 89
N KA++ F + L + P Y+ AN L+ L+ + ++ L LC ++ S +
Sbjct: 61 NDKALEYFDKALKLKPKYILAN--FLKGALLVSLGKLEEAKEVFLKLCRLEKSDLPVKYV 118
Query: 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLL 149
+ K EYD ALK +ID + K + + A E+ + K S E
Sbjct: 119 TAFILKKLGEYDYALK-----IIDKILKKYPKSAIAW--AEKGEILYREGKLKKSLECF- 170
Query: 150 KEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGR 209
D + + C+ L + + LG R A+ CL+K E + K ++L + +
Sbjct: 171 ---DNALKINPKDCQSLLYKGEILFKLG----RYGEALKCLKKVFERNNKDIRALMYIIQ 223
Query: 210 CFAAVGKVHDAF 221
+G+++ A
Sbjct: 224 ILIYLGRLNQAL 235
>sp|P46213|SYI_THEMA Isoleucine--tRNA ligase OS=Thermotoga maritima (strain ATCC 43589 /
MSB8 / DSM 3109 / JCM 10099) GN=ileS PE=3 SV=2
Length = 919
Score = 35.0 bits (79), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 4/93 (4%)
Query: 107 LTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQL 166
++L I A TFT EV +HLHE RKYKT + Y +E+ + L D + L
Sbjct: 749 ISLMKILAPIMTFTMEEV---YSHLHEKDRKYKTVQAEYWPEYREEFIDRKLMEDFEKLL 805
Query: 167 GWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK 199
+ L EK ++ + H L + PK
Sbjct: 806 SIREDVLKALEEKRQQDVIG-HSLDAEVVLVPK 837
>sp|B9K8X3|SYI_THENN Isoleucine--tRNA ligase OS=Thermotoga neapolitana (strain ATCC
49049 / DSM 4359 / NS-E) GN=ileS PE=3 SV=1
Length = 918
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 107 LTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQL 166
+ L I A TFT EV +HLHE RKYKT + Y +ED + + D + L
Sbjct: 748 IALMKILAPIMTFTMEEV---YSHLHEKDRKYKTVQAEYWPEYREDLIDKKIMEDFEKLL 804
Query: 167 GWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLL 207
+ L EK ++ + H L + P++ LL
Sbjct: 805 SIREDVLKALEEKRQQDVIG-HSLDAEVILVPRNDSVKALL 844
>sp|Q8LP10|SPY_EUSER Probable UDP-N-acetylglucosamine--peptide
N-acetylglucosaminyltransferase SPINDLY OS=Eustoma
exaltatum subsp. russellianum GN=SPY PE=2 SV=1
Length = 918
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Query: 152 DDLPVHLK---ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208
D+L H A+ C LG +Y D L + A+ C QK++ P QSL LG
Sbjct: 295 DELAFHFNPHCAEACNNLGVIYKDRDNLDK-------AVECYQKALSIKPNFSQSLNNLG 347
Query: 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
F GK+ A ++ + A+ + ++G
Sbjct: 348 VVFTVQGKMDAAASMIEKAIVANPTYAEAYNNLG 381
>sp|P30260|CDC27_HUMAN Cell division cycle protein 27 homolog OS=Homo sapiens GN=CDC27
PE=1 SV=2
Length = 824
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 29/58 (50%)
Query: 185 LAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
+AI Q++I+ DP + LLG F ++ A +RN++ + + + W +G
Sbjct: 585 IAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLG 642
Score = 32.0 bits (71), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 27/197 (13%)
Query: 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL---IDASPCTFTKL 89
AIK FQ+ + VDP+Y A + LG F + E D AL C I +P +
Sbjct: 586 AIKFFQRAIQVDPNYAYA---YTLLGHEFVLTEELDKALA----CFRNAIRVNPRHYNAW 638
Query: 90 EGL--MFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQ 147
GL ++ ++ A H L D +P + + H+ VQ K ++ + +
Sbjct: 639 YGLGMIYYKQEKFSLAEMHFQKAL-DINP------QSSVLLCHIGVVQHALKKSEKALDT 691
Query: 148 LLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLL 207
L K + + K +C+ +H L ++ A+ L++ + PK +L+
Sbjct: 692 LNKA--IVIDPKNPLCK-----FHRASVLFANEKYKS-ALQELEELKQIVPKESLVYFLI 743
Query: 208 GRCFAAVGKVHDAFLAY 224
G+ + +G+ H A + +
Sbjct: 744 GKVYKKLGQTHLALMNF 760
>sp|A7Z061|CDC27_BOVIN Cell division cycle protein 27 homolog OS=Bos taurus GN=CDC27 PE=2
SV=1
Length = 825
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 29/58 (50%)
Query: 185 LAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
+AI Q++I+ DP + LLG F ++ A +RN++ + + + W +G
Sbjct: 586 IAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLG 643
Score = 32.3 bits (72), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 27/197 (13%)
Query: 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL---IDASPCTFTKL 89
AIK FQ+ + VDP+Y A + LG F + E D AL C I +P +
Sbjct: 587 AIKFFQRAIQVDPNYAYA---YTLLGHEFVLTEELDKALA----CFRNAIRVNPRHYNAW 639
Query: 90 EGL--MFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQ 147
GL ++ ++ A H L D +P + + H+ VQ K ++ + +
Sbjct: 640 YGLGMIYYKQEKFSLAEMHFQKAL-DINP------QSSVLLCHIGVVQHALKKSEKALDT 692
Query: 148 LLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLL 207
L K + + K +C+ +H L ++ A+ L++ + PK +L+
Sbjct: 693 LNKA--IVIDPKNPLCK-----FHRASVLFANEKYKS-ALQELEELKQIVPKESLVYFLI 744
Query: 208 GRCFAAVGKVHDAFLAY 224
G+ + +G+ H A + +
Sbjct: 745 GKVYKKLGQTHLALMNF 761
>sp|A2A6Q5|CDC27_MOUSE Cell division cycle protein 27 homolog OS=Mus musculus GN=Cdc27
PE=1 SV=1
Length = 825
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 29/58 (50%)
Query: 185 LAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
+AI Q++I+ DP + LLG F ++ A +RN++ + + + W +G
Sbjct: 586 IAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLG 643
Score = 32.0 bits (71), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 27/197 (13%)
Query: 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL---IDASPCTFTKL 89
AIK FQ+ + VDP+Y A + LG F + E D AL C I +P +
Sbjct: 587 AIKFFQRAIQVDPNYAYA---YTLLGHEFVLTEELDKALA----CFRNAIRVNPRHYNAW 639
Query: 90 EGL--MFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQ 147
GL ++ ++ A H L D +P + + H+ VQ K ++ + +
Sbjct: 640 YGLGMIYYKQEKFSLAEMHFQKAL-DINP------QSSVLLCHIGVVQHALKKSEKALDT 692
Query: 148 LLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLL 207
L K + + K +C+ +H L ++ A+ L++ + PK +L+
Sbjct: 693 LNKA--IVIDPKNPLCK-----FHRASVLFANEKYKS-ALQELEELKQIVPKESLVYFLI 744
Query: 208 GRCFAAVGKVHDAFLAY 224
G+ + +G+ H A + +
Sbjct: 745 GKVYKKLGQTHLALMNF 761
>sp|Q4V8A2|CDC27_RAT Cell division cycle protein 27 homolog OS=Rattus norvegicus
GN=Cdc27 PE=2 SV=1
Length = 824
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 29/58 (50%)
Query: 185 LAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
+AI Q++I+ DP + LLG F ++ A +RN++ + + + W +G
Sbjct: 585 IAIKFFQRAIQVDPNYAYAYTLLGHEFVLTEELDKALACFRNAIRVNPRHYNAWYGLG 642
Score = 32.0 bits (71), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 84/197 (42%), Gaps = 27/197 (13%)
Query: 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL---IDASPCTFTKL 89
AIK FQ+ + VDP+Y A + LG F + E D AL C I +P +
Sbjct: 586 AIKFFQRAIQVDPNYAYA---YTLLGHEFVLTEELDKALA----CFRNAIRVNPRHYNAW 638
Query: 90 EGL--MFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQ 147
GL ++ ++ A H L D +P + + H+ VQ K ++ + +
Sbjct: 639 YGLGMIYYKQEKFSLAEMHFQKAL-DINP------QSSVLLCHIGVVQHALKKSEKALDT 691
Query: 148 LLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLL 207
L K + + K +C+ +H L ++ A+ L++ + PK +L+
Sbjct: 692 LNKA--IVIDPKNPLCK-----FHRASVLFANEKYKS-ALQELEELKQIVPKESLVYFLI 743
Query: 208 GRCFAAVGKVHDAFLAY 224
G+ + +G+ H A + +
Sbjct: 744 GKVYKKLGQTHLALMNF 760
>sp|Q6PGP7|TTC37_HUMAN Tetratricopeptide repeat protein 37 OS=Homo sapiens GN=TTC37 PE=1
SV=1
Length = 1564
Score = 32.0 bits (71), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLG--RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
++HCL+K++ D + LG C++ +G A + S++ + NA W ++G
Sbjct: 810 SLHCLKKAVRLDSNNHLYWNALGVVACYSGIGNYALAQHCFIKSIQSEQINAVAWTNLGV 869
Query: 244 KDFSNNSNREDYHQALNKYRDL 265
+ N N E H+A + L
Sbjct: 870 L-YLTNENIEQAHEAFKMAQSL 890
>sp|Q8RVB2|SPY_SOLLC Probable UDP-N-acetylglucosamine--peptide
N-acetylglucosaminyltransferase SPINDLY OS=Solanum
lycopersicum GN=SPY PE=2 SV=1
Length = 931
Score = 31.6 bits (70), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 95/250 (38%), Gaps = 57/250 (22%)
Query: 12 GIVTSVRVPKLQQFGKTLNIKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSAL 71
G+V S ++ Q+ LN ++ +Y E + +G++FK + +SA+
Sbjct: 198 GVVYS----EMMQYDMALNCYEKAALERPMYA--------EAYCNMGVIFKNRGDLESAI 245
Query: 72 KHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLE------VR 125
CL V+ ++ A ++ + L D T KLE V
Sbjct: 246 ACYERCL----------------AVSPNFEIAKNNMAIALTDLG--TKVKLEGDINQGVA 287
Query: 126 FHIAHL----HEVQRKYKTAKDSYEQLLKED------DLPVHLK---ADICRQLGWMYHC 172
++ L H Y +Y ++LK D +L H A+ C LG +Y
Sbjct: 288 YYKKALCYNWHYADAMYNLGV-AYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 346
Query: 173 IDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSE 232
D L + A+ C Q ++ P QSL LG + GK+ A ++ +
Sbjct: 347 RDNLDK-------AVECYQLALSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAIIANP 399
Query: 233 GNADTWCSIG 242
A+ + ++G
Sbjct: 400 TYAEAYNNLG 409
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,548,233
Number of Sequences: 539616
Number of extensions: 5062295
Number of successful extensions: 36687
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 217
Number of HSP's that attempted gapping in prelim test: 21429
Number of HSP's gapped (non-prelim): 8982
length of query: 324
length of database: 191,569,459
effective HSP length: 118
effective length of query: 206
effective length of database: 127,894,771
effective search space: 26346322826
effective search space used: 26346322826
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)