Query psy8160
Match_columns 324
No_of_seqs 297 out of 1801
Neff 10.8
Searched_HMMs 46136
Date Fri Aug 16 20:07:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8160.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8160hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626|consensus 100.0 1.8E-36 3.9E-41 259.4 20.8 287 13-321 178-481 (966)
2 KOG4626|consensus 100.0 1.1E-35 2.3E-40 254.7 23.3 268 31-319 235-516 (966)
3 TIGR00990 3a0801s09 mitochondr 100.0 7.3E-29 1.6E-33 229.7 31.9 273 31-321 144-533 (615)
4 TIGR00990 3a0801s09 mitochondr 100.0 1.4E-28 2.9E-33 227.9 31.1 285 15-321 159-567 (615)
5 KOG1126|consensus 100.0 3E-28 6.5E-33 211.1 22.5 246 31-297 336-627 (638)
6 PRK15174 Vi polysaccharide exp 100.0 5E-27 1.1E-31 217.3 31.2 295 5-321 65-377 (656)
7 PRK15174 Vi polysaccharide exp 100.0 8.3E-26 1.8E-30 209.2 32.1 271 4-295 98-386 (656)
8 PRK11447 cellulose synthase su 100.0 6.7E-26 1.5E-30 222.8 32.6 276 31-321 286-662 (1157)
9 TIGR02917 PEP_TPR_lipo putativ 100.0 6E-26 1.3E-30 219.7 31.5 286 13-322 598-897 (899)
10 PRK11447 cellulose synthase su 100.0 9.2E-26 2E-30 221.8 31.4 303 5-321 292-736 (1157)
11 TIGR02917 PEP_TPR_lipo putativ 100.0 1.7E-25 3.6E-30 216.6 32.2 290 10-321 459-795 (899)
12 PRK11788 tetratricopeptide rep 100.0 7E-25 1.5E-29 193.1 30.9 272 31-321 52-343 (389)
13 KOG1155|consensus 99.9 2.1E-24 4.6E-29 179.9 26.7 239 31-290 244-495 (559)
14 PRK11788 tetratricopeptide rep 99.9 1.1E-23 2.4E-28 185.5 26.9 253 53-321 37-307 (389)
15 PRK09782 bacteriophage N4 rece 99.9 1.7E-23 3.6E-28 198.6 29.6 267 31-321 458-736 (987)
16 KOG1126|consensus 99.9 2.3E-24 4.9E-29 187.2 19.9 226 18-259 355-614 (638)
17 PRK09782 bacteriophage N4 rece 99.9 9.4E-23 2E-27 193.6 28.3 262 15-301 476-750 (987)
18 KOG1155|consensus 99.9 6.1E-22 1.3E-26 165.3 25.1 248 31-300 279-546 (559)
19 KOG0547|consensus 99.9 4.3E-22 9.3E-27 167.2 23.8 274 31-321 132-528 (606)
20 KOG2002|consensus 99.9 2.8E-21 6.2E-26 174.1 27.1 286 17-321 163-521 (1018)
21 PRK10049 pgaA outer membrane p 99.9 7.2E-21 1.6E-25 179.9 29.5 175 133-322 248-453 (765)
22 KOG0547|consensus 99.9 4.6E-21 1E-25 161.1 24.9 292 8-321 141-562 (606)
23 KOG1129|consensus 99.9 8.1E-22 1.8E-26 158.1 19.2 234 54-305 226-473 (478)
24 KOG2076|consensus 99.9 1.5E-20 3.3E-25 168.4 29.3 291 11-321 132-508 (895)
25 KOG2002|consensus 99.9 7.4E-22 1.6E-26 177.8 20.7 283 14-305 450-760 (1018)
26 PRK10049 pgaA outer membrane p 99.9 2.4E-20 5.2E-25 176.4 30.9 272 31-322 66-419 (765)
27 PF13429 TPR_15: Tetratricopep 99.9 3.8E-23 8.3E-28 173.6 10.6 247 54-321 11-273 (280)
28 KOG1173|consensus 99.9 1.3E-20 2.8E-25 161.1 23.9 251 31-302 261-530 (611)
29 PRK12370 invasion protein regu 99.9 2.7E-20 5.9E-25 169.9 26.8 237 31-289 278-534 (553)
30 TIGR02521 type_IV_pilW type IV 99.9 3.4E-20 7.4E-25 151.1 24.5 196 50-259 30-226 (234)
31 KOG0624|consensus 99.9 2.3E-20 4.9E-25 150.7 22.6 268 31-316 55-400 (504)
32 KOG1173|consensus 99.9 3.9E-20 8.5E-25 158.1 22.8 253 50-321 243-514 (611)
33 PRK12370 invasion protein regu 99.9 5.9E-20 1.3E-24 167.7 24.9 244 54-319 261-532 (553)
34 KOG1125|consensus 99.9 6.2E-21 1.3E-25 163.6 17.2 216 31-259 302-521 (579)
35 PF13429 TPR_15: Tetratricopep 99.9 1.5E-21 3.2E-26 164.0 11.6 250 21-290 13-277 (280)
36 PRK11189 lipoprotein NlpI; Pro 99.9 1.4E-19 3E-24 152.5 23.0 232 31-301 43-277 (296)
37 KOG0624|consensus 99.9 1.3E-19 2.8E-24 146.5 20.3 261 50-322 37-367 (504)
38 KOG1129|consensus 99.9 3.3E-20 7.2E-25 148.9 16.6 243 60-322 188-455 (478)
39 COG2956 Predicted N-acetylgluc 99.9 3.1E-18 6.7E-23 137.4 27.7 261 25-302 43-323 (389)
40 COG3063 PilF Tfp pilus assembl 99.9 5.3E-19 1.1E-23 135.6 21.3 188 50-250 34-222 (250)
41 COG2956 Predicted N-acetylgluc 99.8 3.2E-18 6.9E-23 137.3 24.3 228 55-296 39-284 (389)
42 KOG1174|consensus 99.8 4.7E-18 1E-22 140.5 25.4 252 33-305 217-515 (564)
43 PRK11189 lipoprotein NlpI; Pro 99.8 1.7E-18 3.8E-23 145.8 21.8 215 19-249 67-285 (296)
44 TIGR02521 type_IV_pilW type IV 99.8 6.9E-18 1.5E-22 137.5 23.1 190 84-291 31-233 (234)
45 KOG1125|consensus 99.8 6.1E-19 1.3E-23 151.4 17.2 224 55-293 289-530 (579)
46 KOG4162|consensus 99.8 8.2E-18 1.8E-22 148.8 24.5 254 31-297 461-790 (799)
47 KOG2003|consensus 99.8 2.4E-18 5.2E-23 144.0 19.4 218 66-301 471-700 (840)
48 KOG2003|consensus 99.8 1.4E-17 3.1E-22 139.5 23.4 253 51-322 419-686 (840)
49 KOG1840|consensus 99.8 6.9E-18 1.5E-22 148.1 21.8 232 48-289 196-478 (508)
50 PLN02789 farnesyltranstransfer 99.8 2.7E-17 5.8E-22 138.4 23.6 206 31-247 54-267 (320)
51 COG3063 PilF Tfp pilus assembl 99.8 2.4E-17 5.2E-22 126.6 20.4 196 86-299 37-245 (250)
52 PLN02789 farnesyltranstransfer 99.8 1E-16 2.2E-21 134.9 24.4 217 60-292 46-304 (320)
53 TIGR00540 hemY_coli hemY prote 99.8 1.7E-16 3.8E-21 140.0 27.1 270 31-321 101-395 (409)
54 KOG2076|consensus 99.8 9.8E-16 2.1E-20 137.9 28.9 263 4-277 161-544 (895)
55 KOG0550|consensus 99.8 3.2E-17 6.9E-22 135.6 17.8 269 31-317 66-380 (486)
56 PRK10747 putative protoheme IX 99.8 9.1E-16 2E-20 134.8 26.5 105 180-290 276-390 (398)
57 TIGR00540 hemY_coli hemY prote 99.8 2.4E-15 5.3E-20 132.7 29.1 254 23-290 125-399 (409)
58 PRK14574 hmsH outer membrane p 99.7 9.8E-15 2.1E-19 136.8 31.4 114 31-152 51-166 (822)
59 PRK14574 hmsH outer membrane p 99.7 5.5E-15 1.2E-19 138.5 28.7 255 48-322 31-393 (822)
60 PRK10747 putative protoheme IX 99.7 5.2E-15 1.1E-19 130.0 26.8 273 31-322 101-387 (398)
61 TIGR03302 OM_YfiO outer membra 99.7 1.3E-15 2.9E-20 124.6 21.6 184 45-259 27-226 (235)
62 KOG0548|consensus 99.7 1.2E-15 2.6E-20 130.4 18.5 225 53-300 226-465 (539)
63 PRK15359 type III secretion sy 99.7 1.1E-15 2.5E-20 114.4 15.6 127 104-248 13-139 (144)
64 KOG0495|consensus 99.7 3.7E-14 8E-19 123.9 26.9 249 31-301 567-857 (913)
65 TIGR03302 OM_YfiO outer membra 99.7 5E-15 1.1E-19 121.2 20.6 189 81-292 30-234 (235)
66 KOG1840|consensus 99.7 1.4E-14 3E-19 127.6 23.4 221 31-259 216-473 (508)
67 KOG4162|consensus 99.7 1.6E-13 3.5E-18 122.1 27.8 282 31-321 411-779 (799)
68 KOG0550|consensus 99.7 2.5E-15 5.5E-20 124.5 15.0 255 53-322 51-347 (486)
69 KOG1130|consensus 99.7 3.4E-16 7.3E-21 129.7 9.9 250 31-290 34-344 (639)
70 cd05804 StaR_like StaR_like; a 99.7 8.4E-14 1.8E-18 121.2 25.4 245 31-289 23-292 (355)
71 KOG1127|consensus 99.7 8.9E-15 1.9E-19 132.9 19.2 186 31-232 475-661 (1238)
72 KOG0495|consensus 99.7 3.4E-13 7.5E-18 118.0 28.1 247 31-299 533-791 (913)
73 cd05804 StaR_like StaR_like; a 99.7 3.6E-14 7.9E-19 123.5 21.6 198 44-259 2-209 (355)
74 PRK15359 type III secretion sy 99.6 1.2E-14 2.6E-19 108.8 14.9 123 34-170 13-136 (144)
75 PLN03218 maturation of RBCL 1; 99.6 1.6E-12 3.4E-17 125.4 31.1 238 31-287 454-710 (1060)
76 KOG1174|consensus 99.6 3.8E-13 8.3E-18 111.8 23.1 246 55-320 202-495 (564)
77 PRK10370 formate-dependent nit 99.6 1.6E-13 3.4E-18 108.3 19.1 156 58-238 23-181 (198)
78 PLN03218 maturation of RBCL 1; 99.6 6.6E-12 1.4E-16 121.1 33.0 267 31-322 423-710 (1060)
79 KOG0548|consensus 99.6 5.1E-13 1.1E-17 114.5 22.6 201 31-259 241-449 (539)
80 PLN03081 pentatricopeptide (PP 99.6 1.8E-12 3.8E-17 122.5 27.5 265 31-322 276-554 (697)
81 KOG1156|consensus 99.6 7.5E-13 1.6E-17 115.8 22.7 232 53-302 9-260 (700)
82 KOG1127|consensus 99.6 1.5E-13 3.3E-18 125.0 19.0 212 63-290 470-700 (1238)
83 PF12569 NARP1: NMDA receptor- 99.6 2.7E-12 6E-17 114.4 26.3 249 31-292 21-336 (517)
84 KOG3060|consensus 99.6 4.2E-12 9.2E-17 99.2 22.4 204 31-249 29-239 (289)
85 PRK10370 formate-dependent nit 99.6 9.8E-14 2.1E-18 109.5 13.1 111 182-295 54-178 (198)
86 KOG0553|consensus 99.5 4.9E-14 1.1E-18 112.9 10.4 113 160-305 81-193 (304)
87 KOG3060|consensus 99.5 2.2E-12 4.8E-17 100.8 18.8 174 90-301 58-231 (289)
88 PRK15179 Vi polysaccharide bio 99.5 1.8E-12 3.8E-17 119.7 21.2 125 123-259 87-211 (694)
89 KOG1156|consensus 99.5 2.8E-11 6.1E-16 106.1 26.7 130 16-152 38-173 (700)
90 PLN03081 pentatricopeptide (PP 99.5 1.1E-11 2.5E-16 117.1 26.6 230 31-289 175-454 (697)
91 TIGR02552 LcrH_SycD type III s 99.5 7.1E-13 1.5E-17 98.7 14.8 118 106-238 5-122 (135)
92 KOG0553|consensus 99.5 4.7E-13 1E-17 107.3 14.1 120 122-253 81-200 (304)
93 KOG1128|consensus 99.5 1.1E-12 2.5E-17 116.1 17.7 211 48-290 395-616 (777)
94 TIGR02552 LcrH_SycD type III s 99.5 1.9E-13 4E-18 101.8 10.9 109 188-299 4-123 (135)
95 KOG1128|consensus 99.5 1.3E-12 2.9E-17 115.7 17.4 196 31-259 415-610 (777)
96 COG5010 TadD Flp pilus assembl 99.5 8.1E-12 1.8E-16 98.4 19.6 174 69-259 52-225 (257)
97 PRK14720 transcript cleavage f 99.5 1.1E-11 2.3E-16 115.6 22.7 221 48-302 28-264 (906)
98 PRK14720 transcript cleavage f 99.5 4.9E-12 1.1E-16 117.9 20.1 254 11-305 23-321 (906)
99 PLN03077 Protein ECB2; Provisi 99.5 6E-11 1.3E-15 114.8 26.9 227 31-288 340-616 (857)
100 PRK15179 Vi polysaccharide bio 99.5 9.2E-12 2E-16 115.0 20.1 145 79-238 81-225 (694)
101 KOG1130|consensus 99.4 1.7E-13 3.8E-18 113.9 6.4 231 58-291 24-305 (639)
102 PLN03077 Protein ECB2; Provisi 99.4 3.3E-10 7.2E-15 109.7 29.6 264 31-319 406-714 (857)
103 PRK15363 pathogenicity island 99.4 2.7E-12 5.8E-17 94.6 11.3 92 160-259 35-126 (157)
104 COG5010 TadD Flp pilus assembl 99.4 1.2E-10 2.7E-15 91.8 19.7 179 31-228 50-229 (257)
105 PRK15363 pathogenicity island 99.4 3.5E-11 7.5E-16 88.8 13.9 99 50-152 34-133 (157)
106 PF13525 YfiO: Outer membrane 99.4 2.4E-10 5.2E-15 90.9 19.8 168 51-255 5-197 (203)
107 PLN03088 SGT1, suppressor of 99.4 2E-11 4.4E-16 105.3 14.7 114 125-249 5-118 (356)
108 PF14938 SNAP: Soluble NSF att 99.4 3.8E-11 8.2E-16 100.6 15.4 160 91-259 42-219 (282)
109 PF04733 Coatomer_E: Coatomer 99.4 3.9E-11 8.4E-16 100.1 15.1 221 51-319 66-289 (290)
110 CHL00033 ycf3 photosystem I as 99.3 2.4E-11 5.2E-16 93.9 11.2 141 134-295 11-154 (168)
111 PRK10866 outer membrane biogen 99.3 9.2E-10 2E-14 89.7 20.9 165 91-259 39-235 (243)
112 PRK02603 photosystem I assembl 99.3 6.5E-11 1.4E-15 91.8 13.5 129 146-295 23-154 (172)
113 KOG3785|consensus 99.3 3.8E-09 8.3E-14 86.9 23.8 235 31-296 39-317 (557)
114 COG4783 Putative Zn-dependent 99.3 6.8E-10 1.5E-14 94.9 20.1 153 123-295 307-460 (484)
115 PLN03088 SGT1, suppressor of 99.3 4.1E-11 8.8E-16 103.5 11.8 97 180-302 15-111 (356)
116 PF14938 SNAP: Soluble NSF att 99.3 3.5E-10 7.5E-15 94.8 16.6 182 45-234 29-229 (282)
117 TIGR02795 tol_pal_ybgF tol-pal 99.2 3E-10 6.6E-15 82.3 13.2 107 123-238 3-113 (119)
118 PF12569 NARP1: NMDA receptor- 99.2 2.2E-08 4.7E-13 89.8 27.0 223 22-259 44-328 (517)
119 PF13414 TPR_11: TPR repeat; P 99.2 5.9E-11 1.3E-15 77.1 8.0 66 160-232 3-69 (69)
120 PRK10866 outer membrane biogen 99.2 6.2E-09 1.3E-13 84.9 21.1 175 50-227 31-238 (243)
121 PF13525 YfiO: Outer membrane 99.2 5.8E-09 1.3E-13 83.0 20.5 147 31-221 22-198 (203)
122 COG3071 HemY Uncharacterized e 99.2 3.9E-08 8.5E-13 82.2 25.7 226 54-290 121-390 (400)
123 PRK04841 transcriptional regul 99.2 1.3E-08 2.8E-13 99.6 27.1 255 31-295 469-765 (903)
124 PF13414 TPR_11: TPR repeat; P 99.2 2.4E-11 5.3E-16 78.9 5.5 67 200-292 2-69 (69)
125 PRK02603 photosystem I assembl 99.2 1.1E-09 2.5E-14 84.8 15.6 106 120-234 33-153 (172)
126 KOG2376|consensus 99.2 1.3E-07 2.9E-12 82.8 29.1 137 55-200 83-257 (652)
127 KOG4340|consensus 99.2 4.3E-09 9.3E-14 84.7 18.3 250 31-304 27-319 (459)
128 KOG1915|consensus 99.2 1.4E-07 3.1E-12 80.6 27.7 206 79-295 317-541 (677)
129 COG3071 HemY Uncharacterized e 99.2 6.4E-08 1.4E-12 80.9 24.9 211 31-259 135-384 (400)
130 CHL00033 ycf3 photosystem I as 99.2 1.7E-09 3.7E-14 83.5 15.0 106 121-235 34-154 (168)
131 cd00189 TPR Tetratricopeptide 99.2 8.2E-10 1.8E-14 76.1 12.1 99 124-233 2-100 (100)
132 PF12895 Apc3: Anaphase-promot 99.2 6.9E-11 1.5E-15 79.9 6.1 78 180-259 2-81 (84)
133 TIGR02795 tol_pal_ybgF tol-pal 99.2 5E-10 1.1E-14 81.1 11.0 95 202-299 3-114 (119)
134 PRK04841 transcriptional regul 99.2 2.9E-08 6.2E-13 97.2 26.6 251 31-291 426-721 (903)
135 PF09976 TPR_21: Tetratricopep 99.2 4.8E-09 1E-13 78.8 16.4 121 97-228 24-145 (145)
136 PF13432 TPR_16: Tetratricopep 99.2 2.4E-10 5.3E-15 73.1 8.1 64 165-235 2-65 (65)
137 COG4783 Putative Zn-dependent 99.2 7.8E-09 1.7E-13 88.5 19.0 150 51-232 306-456 (484)
138 PF09976 TPR_21: Tetratricopep 99.2 2.5E-09 5.4E-14 80.4 14.6 115 134-259 23-141 (145)
139 KOG2376|consensus 99.2 2.2E-08 4.7E-13 87.5 21.9 227 31-295 29-258 (652)
140 PF12895 Apc3: Anaphase-promot 99.2 2.9E-10 6.4E-15 76.8 8.5 83 135-227 2-84 (84)
141 KOG3785|consensus 99.1 3.4E-08 7.3E-13 81.4 21.1 237 31-291 74-423 (557)
142 KOG1915|consensus 99.1 3.9E-07 8.5E-12 78.0 28.0 144 6-152 63-237 (677)
143 PF04733 Coatomer_E: Coatomer 99.1 1.1E-09 2.5E-14 91.3 12.8 224 51-320 35-263 (290)
144 cd00189 TPR Tetratricopeptide 99.1 1.5E-09 3.3E-14 74.7 11.5 96 53-152 2-98 (100)
145 COG4235 Cytochrome c biogenesi 99.1 5E-09 1.1E-13 85.0 15.5 124 100-235 138-261 (287)
146 PF13432 TPR_16: Tetratricopep 99.1 2.4E-10 5.1E-15 73.2 5.8 65 205-295 1-65 (65)
147 PRK11906 transcriptional regul 99.1 1.7E-08 3.6E-13 87.0 18.2 160 126-293 259-439 (458)
148 COG4235 Cytochrome c biogenesi 99.1 1.7E-09 3.8E-14 87.6 10.9 112 182-295 137-261 (287)
149 PRK10153 DNA-binding transcrip 99.1 9.2E-09 2E-13 92.6 16.6 135 155-296 334-488 (517)
150 PRK15331 chaperone protein Sic 99.1 1.3E-09 2.8E-14 80.9 8.8 77 182-259 52-128 (165)
151 KOG4340|consensus 99.0 1.3E-08 2.8E-13 81.9 15.0 202 62-285 21-265 (459)
152 KOG1941|consensus 99.0 3.7E-08 7.9E-13 81.4 17.0 227 54-290 9-275 (518)
153 KOG0543|consensus 99.0 2.7E-09 5.8E-14 89.6 10.7 112 162-306 210-336 (397)
154 KOG2047|consensus 99.0 6.1E-07 1.3E-11 79.5 25.4 137 180-320 360-535 (835)
155 PF09295 ChAPs: ChAPs (Chs5p-A 99.0 1.7E-08 3.7E-13 87.1 15.7 120 125-259 172-291 (395)
156 KOG2047|consensus 99.0 8.1E-07 1.7E-11 78.8 25.8 189 92-292 355-581 (835)
157 PRK15331 chaperone protein Sic 99.0 6.5E-09 1.4E-13 77.2 11.2 107 190-300 26-143 (165)
158 COG4785 NlpI Lipoprotein NlpI, 99.0 3E-08 6.6E-13 76.2 14.9 183 86-292 67-268 (297)
159 KOG0543|consensus 99.0 1.5E-08 3.3E-13 85.1 14.1 82 162-250 259-340 (397)
160 PRK10803 tol-pal system protei 99.0 1.9E-08 4.1E-13 82.6 14.3 107 123-238 143-254 (263)
161 COG4785 NlpI Lipoprotein NlpI, 99.0 9.5E-08 2.1E-12 73.6 16.9 189 49-259 63-260 (297)
162 PRK10153 DNA-binding transcrip 99.0 4.3E-08 9.4E-13 88.3 17.7 89 138-236 400-488 (517)
163 PF12688 TPR_5: Tetratrico pep 99.0 2.1E-08 4.6E-13 71.7 12.2 99 123-229 2-103 (120)
164 PF14559 TPR_19: Tetratricopep 99.0 3E-09 6.5E-14 68.7 6.9 65 180-244 4-68 (68)
165 KOG3081|consensus 98.9 5.1E-07 1.1E-11 71.8 19.9 152 85-255 109-260 (299)
166 PRK10803 tol-pal system protei 98.9 1.2E-08 2.7E-13 83.7 11.4 95 202-299 143-255 (263)
167 PRK11906 transcriptional regul 98.9 1.1E-07 2.4E-12 82.0 17.1 144 99-259 273-430 (458)
168 KOG1941|consensus 98.9 2.2E-07 4.7E-12 77.0 17.1 221 31-259 23-269 (518)
169 PLN03098 LPA1 LOW PSII ACCUMUL 98.9 1E-08 2.3E-13 88.0 9.7 64 195-259 69-135 (453)
170 KOG4234|consensus 98.9 3.3E-08 7.1E-13 75.1 10.9 118 180-323 108-234 (271)
171 PF12688 TPR_5: Tetratrico pep 98.9 5.8E-08 1.3E-12 69.4 11.6 91 161-259 2-98 (120)
172 COG0457 NrfG FOG: TPR repeat [ 98.9 3E-06 6.6E-11 68.4 23.6 109 182-293 145-268 (291)
173 COG0457 NrfG FOG: TPR repeat [ 98.9 5.6E-06 1.2E-10 66.8 25.2 214 31-259 40-259 (291)
174 PF09295 ChAPs: ChAPs (Chs5p-A 98.9 1.5E-07 3.2E-12 81.4 15.8 120 90-227 175-294 (395)
175 COG4105 ComL DNA uptake lipopr 98.8 1.9E-06 4.1E-11 68.7 20.2 163 91-257 41-225 (254)
176 PF13371 TPR_9: Tetratricopept 98.8 2.7E-08 5.9E-13 65.2 7.6 63 180-242 8-70 (73)
177 COG4105 ComL DNA uptake lipopr 98.8 2.3E-06 5E-11 68.2 18.3 161 122-295 34-238 (254)
178 PF06552 TOM20_plant: Plant sp 98.7 2.7E-08 5.9E-13 74.6 6.5 108 182-304 6-123 (186)
179 KOG4234|consensus 98.7 3.3E-07 7.2E-12 69.7 11.9 119 123-250 96-217 (271)
180 COG1729 Uncharacterized protei 98.7 2.9E-07 6.2E-12 74.0 12.1 107 125-240 144-254 (262)
181 PF13512 TPR_18: Tetratricopep 98.7 7E-07 1.5E-11 65.0 12.6 106 123-237 11-135 (142)
182 KOG4648|consensus 98.7 2.9E-08 6.2E-13 81.5 5.7 98 55-158 101-199 (536)
183 PF06552 TOM20_plant: Plant sp 98.7 3.9E-07 8.5E-12 68.4 11.1 104 137-244 6-123 (186)
184 PF13424 TPR_12: Tetratricopep 98.6 2.1E-07 4.6E-12 61.8 7.7 73 50-152 4-76 (78)
185 KOG1070|consensus 98.6 9.1E-06 2E-10 78.1 20.9 209 31-259 1441-1657(1710)
186 COG1729 Uncharacterized protei 98.6 4E-07 8.7E-12 73.2 10.2 94 204-300 144-254 (262)
187 KOG1070|consensus 98.6 4.2E-05 9.2E-10 73.7 24.9 207 70-291 1443-1664(1710)
188 KOG4555|consensus 98.6 8.7E-07 1.9E-11 62.6 10.4 99 54-152 46-145 (175)
189 PF13428 TPR_14: Tetratricopep 98.6 1.1E-07 2.4E-12 55.2 5.1 44 201-244 1-44 (44)
190 KOG3617|consensus 98.6 8.9E-06 1.9E-10 74.4 18.7 25 234-259 1079-1103(1416)
191 PF13371 TPR_9: Tetratricopept 98.6 4.5E-07 9.8E-12 59.3 7.7 60 58-117 2-62 (73)
192 KOG1586|consensus 98.6 1.3E-05 2.9E-10 62.6 16.6 155 64-238 27-191 (288)
193 PF13512 TPR_18: Tetratricopep 98.6 4.5E-06 9.8E-11 60.8 13.3 117 51-203 10-135 (142)
194 PF14559 TPR_19: Tetratricopep 98.6 4.4E-07 9.6E-12 58.4 7.4 66 133-209 2-67 (68)
195 KOG4648|consensus 98.6 5.5E-07 1.2E-11 74.1 9.3 105 126-241 101-205 (536)
196 KOG3617|consensus 98.5 2E-05 4.4E-10 72.2 19.8 200 52-289 758-995 (1416)
197 KOG2471|consensus 98.5 1E-05 2.2E-10 69.8 16.7 153 55-214 210-382 (696)
198 KOG1586|consensus 98.5 3.4E-05 7.3E-10 60.4 17.2 137 95-238 84-232 (288)
199 COG4700 Uncharacterized protei 98.5 5.8E-05 1.3E-09 57.1 17.3 125 123-259 90-216 (251)
200 KOG3081|consensus 98.4 4.4E-05 9.6E-10 61.0 17.1 164 53-237 110-278 (299)
201 PF13424 TPR_12: Tetratricopep 98.4 7.4E-07 1.6E-11 59.1 6.1 65 160-231 5-76 (78)
202 PLN03098 LPA1 LOW PSII ACCUMUL 98.4 1.5E-06 3.2E-11 75.1 8.8 67 155-230 72-141 (453)
203 KOG2053|consensus 98.4 0.00023 5E-09 66.0 22.7 238 31-291 26-274 (932)
204 KOG2796|consensus 98.4 0.00014 3.1E-09 58.1 18.6 126 123-259 178-309 (366)
205 KOG2796|consensus 98.4 6.4E-05 1.4E-09 60.1 16.5 134 90-235 183-320 (366)
206 PF13431 TPR_17: Tetratricopep 98.3 3.9E-07 8.5E-12 49.4 2.6 32 224-256 2-33 (34)
207 COG4700 Uncharacterized protei 98.3 0.00024 5.3E-09 53.9 18.0 128 87-227 92-219 (251)
208 PF13431 TPR_17: Tetratricopep 98.3 5.6E-07 1.2E-11 48.7 3.0 34 189-222 1-34 (34)
209 KOG1585|consensus 98.3 0.00026 5.6E-09 56.0 17.6 27 123-149 32-58 (308)
210 PF00515 TPR_1: Tetratricopept 98.3 1.7E-06 3.7E-11 47.1 3.8 34 201-234 1-34 (34)
211 KOG1585|consensus 98.2 0.00078 1.7E-08 53.4 19.4 231 32-272 11-265 (308)
212 KOG1550|consensus 98.2 0.0008 1.7E-08 62.0 23.0 175 31-227 229-423 (552)
213 PF07719 TPR_2: Tetratricopept 98.2 3.4E-06 7.4E-11 45.8 4.5 34 201-234 1-34 (34)
214 KOG4555|consensus 98.2 3.2E-05 7E-10 54.9 9.7 89 180-269 56-148 (175)
215 KOG2471|consensus 98.2 2.2E-05 4.8E-10 67.8 10.5 122 182-306 221-380 (696)
216 KOG4642|consensus 98.2 9.9E-06 2.2E-10 63.5 7.6 79 180-259 23-101 (284)
217 KOG4642|consensus 98.1 7E-06 1.5E-10 64.4 6.5 91 129-230 17-107 (284)
218 KOG2300|consensus 98.1 0.0047 1E-07 53.9 26.4 116 31-146 26-151 (629)
219 PF04184 ST7: ST7 protein; In 98.1 0.00031 6.7E-09 61.3 16.6 171 132-317 178-406 (539)
220 KOG2053|consensus 98.1 0.0087 1.9E-07 56.0 26.4 214 62-294 20-259 (932)
221 PF00515 TPR_1: Tetratricopept 98.1 2.7E-06 5.8E-11 46.3 2.7 33 260-294 2-34 (34)
222 PF13428 TPR_14: Tetratricopep 98.1 3.5E-06 7.6E-11 48.8 3.2 42 260-303 2-43 (44)
223 KOG2610|consensus 98.1 0.0005 1.1E-08 57.0 16.5 146 129-288 110-274 (491)
224 KOG0551|consensus 98.1 7.4E-05 1.6E-09 61.6 11.1 105 122-233 81-185 (390)
225 PF05843 Suf: Suppressor of fo 98.0 0.00046 1E-08 57.8 15.9 137 53-202 3-142 (280)
226 PF07719 TPR_2: Tetratricopept 98.0 1.5E-05 3.3E-10 43.1 4.4 32 52-83 2-34 (34)
227 PF10300 DUF3808: Protein of u 98.0 0.00063 1.4E-08 61.3 17.1 180 34-230 177-376 (468)
228 KOG2610|consensus 98.0 0.0011 2.3E-08 55.1 16.1 157 90-259 109-270 (491)
229 COG2976 Uncharacterized protei 97.9 0.00056 1.2E-08 52.4 12.6 107 186-295 71-193 (207)
230 COG0790 FOG: TPR repeat, SEL1 97.9 0.0062 1.3E-07 51.5 20.5 172 61-250 51-237 (292)
231 PF05843 Suf: Suppressor of fo 97.9 0.00052 1.1E-08 57.5 13.5 128 162-299 3-145 (280)
232 KOG0376|consensus 97.9 3.3E-05 7.2E-10 66.8 6.1 108 128-246 10-117 (476)
233 KOG0376|consensus 97.8 7.3E-06 1.6E-10 70.7 1.9 78 181-259 18-95 (476)
234 KOG0545|consensus 97.8 0.00056 1.2E-08 54.2 11.8 109 122-237 178-300 (329)
235 PF04184 ST7: ST7 protein; In 97.8 0.0022 4.7E-08 56.3 16.4 175 56-241 173-386 (539)
236 PF13281 DUF4071: Domain of un 97.8 0.0033 7.2E-08 54.1 17.3 164 122-294 141-338 (374)
237 KOG4507|consensus 97.8 0.0011 2.4E-08 59.0 14.6 96 206-304 612-719 (886)
238 PF13181 TPR_8: Tetratricopept 97.8 3.5E-05 7.5E-10 41.7 3.7 33 202-234 2-34 (34)
239 PF10300 DUF3808: Protein of u 97.8 0.0024 5.1E-08 57.6 16.8 152 134-290 200-376 (468)
240 KOG0551|consensus 97.7 0.0005 1.1E-08 56.9 10.3 99 90-199 87-185 (390)
241 KOG3616|consensus 97.7 0.0097 2.1E-07 54.7 18.9 33 260-294 996-1028(1636)
242 PF13181 TPR_8: Tetratricopept 97.7 3.3E-05 7.2E-10 41.8 2.3 33 260-294 2-34 (34)
243 KOG0545|consensus 97.7 0.00051 1.1E-08 54.5 9.5 102 50-157 177-297 (329)
244 COG2976 Uncharacterized protei 97.7 0.0017 3.7E-08 49.8 12.0 95 53-152 91-189 (207)
245 PF02259 FAT: FAT domain; Int 97.6 0.0069 1.5E-07 52.6 17.1 152 81-233 143-341 (352)
246 KOG0985|consensus 97.6 0.061 1.3E-06 51.5 23.2 74 202-277 1280-1372(1666)
247 PF08631 SPO22: Meiosis protei 97.6 0.019 4.1E-07 48.2 18.6 133 96-232 5-152 (278)
248 COG0790 FOG: TPR repeat, SEL1 97.6 0.035 7.7E-07 46.9 20.4 183 31-234 58-270 (292)
249 COG3118 Thioredoxin domain-con 97.6 0.022 4.8E-07 46.8 17.6 145 88-250 138-287 (304)
250 KOG1550|consensus 97.5 0.0029 6.4E-08 58.3 14.3 142 138-291 228-394 (552)
251 PF09986 DUF2225: Uncharacteri 97.5 0.0023 4.9E-08 51.1 11.4 101 134-234 89-198 (214)
252 PF13174 TPR_6: Tetratricopept 97.4 0.00023 5E-09 38.0 3.6 33 202-234 1-33 (33)
253 KOG0530|consensus 97.4 0.0071 1.5E-07 48.7 13.1 146 64-241 39-187 (318)
254 PF03704 BTAD: Bacterial trans 97.4 0.0021 4.5E-08 48.2 9.8 57 202-259 63-119 (146)
255 PF03704 BTAD: Bacterial trans 97.4 0.01 2.3E-07 44.3 13.3 50 180-229 75-124 (146)
256 COG3898 Uncharacterized membra 97.4 0.071 1.5E-06 45.7 23.7 249 53-319 122-386 (531)
257 KOG3616|consensus 97.4 0.057 1.2E-06 50.0 19.4 59 52-110 662-732 (1636)
258 KOG0530|consensus 97.4 0.0074 1.6E-07 48.6 12.3 172 63-249 55-236 (318)
259 KOG2300|consensus 97.3 0.04 8.6E-07 48.4 17.3 187 56-250 328-540 (629)
260 PF09986 DUF2225: Uncharacteri 97.3 0.0068 1.5E-07 48.4 12.1 99 31-155 94-198 (214)
261 COG2909 MalT ATP-dependent tra 97.3 0.15 3.3E-06 48.2 22.0 258 50-322 346-685 (894)
262 PF13176 TPR_7: Tetratricopept 97.3 0.00046 1E-08 37.8 3.4 28 203-230 1-28 (36)
263 PF08424 NRDE-2: NRDE-2, neces 97.2 0.028 6E-07 48.2 15.9 142 144-292 7-185 (321)
264 PF13174 TPR_6: Tetratricopept 97.2 0.00091 2E-08 35.6 4.3 32 123-156 1-32 (33)
265 KOG2041|consensus 97.2 0.19 4E-06 46.4 20.3 27 51-77 692-718 (1189)
266 PF13176 TPR_7: Tetratricopept 97.2 0.00031 6.8E-09 38.5 2.1 29 261-291 1-29 (36)
267 KOG1914|consensus 97.1 0.19 4.2E-06 44.9 20.0 206 33-255 264-491 (656)
268 KOG1308|consensus 97.1 0.00024 5.2E-09 59.0 1.6 91 131-232 123-213 (377)
269 smart00028 TPR Tetratricopepti 97.0 0.0013 2.8E-08 34.3 3.9 33 202-234 2-34 (34)
270 COG4649 Uncharacterized protei 97.0 0.098 2.1E-06 39.6 16.3 143 94-246 68-211 (221)
271 KOG0985|consensus 97.0 0.21 4.6E-06 48.1 19.4 141 123-289 1105-1248(1666)
272 COG3898 Uncharacterized membra 97.0 0.2 4.4E-06 43.0 21.2 247 55-320 88-353 (531)
273 COG3118 Thioredoxin domain-con 97.0 0.14 3.1E-06 42.3 16.3 147 52-215 135-286 (304)
274 PF14561 TPR_20: Tetratricopep 96.9 0.016 3.4E-07 39.3 8.9 65 186-250 7-73 (90)
275 PF14853 Fis1_TPR_C: Fis1 C-te 96.9 0.0053 1.2E-07 36.7 5.8 42 202-243 2-43 (53)
276 KOG1308|consensus 96.9 0.0005 1.1E-08 57.1 1.9 79 180-259 127-205 (377)
277 PF13281 DUF4071: Domain of un 96.9 0.26 5.7E-06 42.7 22.6 176 50-236 140-340 (374)
278 KOG4507|consensus 96.9 0.0041 8.8E-08 55.6 7.2 106 129-244 614-719 (886)
279 PF04781 DUF627: Protein of un 96.8 0.031 6.7E-07 38.9 10.0 48 184-231 61-108 (111)
280 KOG3824|consensus 96.8 0.0028 6E-08 52.1 5.5 64 180-243 129-192 (472)
281 PF09613 HrpB1_HrpK: Bacterial 96.8 0.13 2.9E-06 38.6 13.6 100 180-290 23-122 (160)
282 PF14853 Fis1_TPR_C: Fis1 C-te 96.7 0.0065 1.4E-07 36.3 5.2 40 52-91 2-42 (53)
283 PF14561 TPR_20: Tetratricopep 96.7 0.03 6.6E-07 37.9 9.1 66 33-101 7-75 (90)
284 PF07079 DUF1347: Protein of u 96.6 0.42 9.1E-06 42.0 26.9 51 268-322 471-521 (549)
285 smart00028 TPR Tetratricopepti 96.6 0.005 1.1E-07 31.9 4.2 31 52-82 2-33 (34)
286 KOG3364|consensus 96.6 0.015 3.3E-07 41.8 7.2 78 160-241 32-111 (149)
287 KOG2396|consensus 96.6 0.017 3.8E-07 50.7 8.8 91 185-300 89-179 (568)
288 PRK10941 hypothetical protein; 96.5 0.025 5.4E-07 46.8 8.9 62 180-241 194-255 (269)
289 PF10345 Cohesin_load: Cohesin 96.4 0.83 1.8E-05 43.1 25.4 278 31-320 38-428 (608)
290 KOG1464|consensus 96.4 0.43 9.2E-06 39.0 15.4 48 31-78 44-92 (440)
291 PF02259 FAT: FAT domain; Int 96.4 0.58 1.3E-05 40.6 22.1 134 161-304 147-301 (352)
292 PRK10941 hypothetical protein; 96.3 0.023 4.9E-07 47.0 8.1 71 202-298 182-252 (269)
293 COG2909 MalT ATP-dependent tra 96.3 1 2.2E-05 43.0 20.9 100 53-152 417-527 (894)
294 PF08424 NRDE-2: NRDE-2, neces 96.3 0.58 1.3E-05 40.1 16.6 122 100-231 47-184 (321)
295 PF10345 Cohesin_load: Cohesin 96.2 1.2 2.6E-05 42.1 23.2 249 31-285 77-428 (608)
296 PF04910 Tcf25: Transcriptiona 96.1 0.35 7.5E-06 42.1 14.5 102 124-235 105-227 (360)
297 PF10602 RPN7: 26S proteasome 96.1 0.11 2.3E-06 40.3 10.3 102 51-152 36-143 (177)
298 KOG2396|consensus 96.1 0.083 1.8E-06 46.7 10.5 89 141-240 90-179 (568)
299 KOG1464|consensus 96.0 0.67 1.4E-05 38.0 15.3 204 64-273 40-286 (440)
300 PF04910 Tcf25: Transcriptiona 96.0 0.79 1.7E-05 40.0 16.3 152 41-202 33-228 (360)
301 TIGR02561 HrpB1_HrpK type III 96.0 0.22 4.8E-06 36.8 10.8 97 181-288 24-120 (153)
302 PF04781 DUF627: Protein of un 96.0 0.13 2.8E-06 35.9 8.9 91 58-152 3-108 (111)
303 KOG3364|consensus 95.9 0.31 6.8E-06 35.3 10.9 79 123-210 33-114 (149)
304 PF09613 HrpB1_HrpK: Bacterial 95.7 0.23 5E-06 37.3 9.9 83 53-139 12-95 (160)
305 PF12968 DUF3856: Domain of Un 95.6 0.49 1.1E-05 33.5 11.3 50 180-229 22-83 (144)
306 PF10602 RPN7: 26S proteasome 95.6 0.27 5.8E-06 38.1 10.7 105 84-198 36-144 (177)
307 KOG4014|consensus 95.6 0.77 1.7E-05 35.3 12.7 29 50-78 33-62 (248)
308 PF13374 TPR_10: Tetratricopep 95.5 0.032 6.9E-07 31.3 4.1 29 202-230 3-31 (42)
309 COG4976 Predicted methyltransf 95.4 0.034 7.4E-07 44.0 5.0 55 180-234 8-62 (287)
310 PRK13184 pknD serine/threonine 95.4 0.24 5.3E-06 48.3 11.7 107 127-237 480-588 (932)
311 KOG1538|consensus 95.1 1.1 2.5E-05 41.2 14.1 45 210-259 782-827 (1081)
312 PF12862 Apc5: Anaphase-promot 95.1 0.17 3.6E-06 34.6 7.3 57 97-153 11-72 (94)
313 KOG1914|consensus 95.1 2.5 5.3E-05 38.3 19.3 146 100-259 309-458 (656)
314 PF11207 DUF2989: Protein of u 95.0 1.3 2.8E-05 34.7 14.6 53 201-255 141-197 (203)
315 KOG4014|consensus 95.0 1.2 2.7E-05 34.2 12.6 54 137-196 88-141 (248)
316 PF07720 TPR_3: Tetratricopept 94.9 0.093 2E-06 28.5 4.4 33 202-234 2-36 (36)
317 KOG3824|consensus 94.9 0.1 2.3E-06 43.2 6.5 62 57-118 122-184 (472)
318 KOG2041|consensus 94.8 2.5 5.3E-05 39.5 15.2 183 7-226 683-877 (1189)
319 PF13374 TPR_10: Tetratricopep 94.7 0.076 1.7E-06 29.6 4.1 30 123-152 3-32 (42)
320 PF04053 Coatomer_WDAD: Coatom 94.7 2.3 5.1E-05 38.2 15.2 66 201-275 321-389 (443)
321 PRK13184 pknD serine/threonine 94.7 0.79 1.7E-05 44.9 13.0 89 31-119 492-587 (932)
322 COG5191 Uncharacterized conser 94.7 0.034 7.5E-07 46.0 3.3 87 188-300 94-181 (435)
323 PF10373 EST1_DNA_bind: Est1 D 94.6 0.18 4E-06 42.1 7.8 62 186-247 1-62 (278)
324 KOG4814|consensus 94.6 0.85 1.8E-05 41.9 11.8 98 124-230 356-457 (872)
325 KOG1839|consensus 94.5 0.74 1.6E-05 45.7 12.3 170 54-230 935-1128(1236)
326 PF08631 SPO22: Meiosis protei 94.5 2.5 5.4E-05 35.5 22.6 118 31-152 10-151 (278)
327 KOG3807|consensus 94.5 2.7 5.8E-05 35.7 17.3 180 55-242 188-403 (556)
328 COG5191 Uncharacterized conser 94.4 0.11 2.4E-06 43.1 5.7 62 180-241 120-182 (435)
329 PF12968 DUF3856: Domain of Un 94.4 1.2 2.7E-05 31.5 12.3 101 123-230 8-129 (144)
330 KOG1258|consensus 94.3 4.2 9.1E-05 37.2 20.1 183 53-249 299-489 (577)
331 KOG1258|consensus 94.2 4.3 9.4E-05 37.1 24.7 261 31-298 62-403 (577)
332 KOG1310|consensus 94.2 0.37 8E-06 43.1 8.7 93 135-235 387-479 (758)
333 COG4976 Predicted methyltransf 94.0 0.071 1.5E-06 42.2 3.6 62 209-296 3-64 (287)
334 COG4649 Uncharacterized protei 93.8 2.3 5E-05 32.5 16.0 95 53-150 96-195 (221)
335 PF10516 SHNi-TPR: SHNi-TPR; 93.8 0.11 2.4E-06 28.6 3.2 30 202-231 2-31 (38)
336 KOG4814|consensus 93.8 1.2 2.6E-05 41.0 11.2 79 180-259 367-451 (872)
337 PF12739 TRAPPC-Trs85: ER-Golg 93.8 3.2 6.9E-05 37.1 14.2 166 123-293 209-402 (414)
338 PF04053 Coatomer_WDAD: Coatom 93.8 0.71 1.5E-05 41.4 10.0 28 200-227 346-373 (443)
339 KOG0529|consensus 93.7 3.5 7.6E-05 36.0 13.4 134 99-243 90-237 (421)
340 PF10516 SHNi-TPR: SHNi-TPR; 93.7 0.16 3.4E-06 28.0 3.6 27 52-78 2-28 (38)
341 TIGR02561 HrpB1_HrpK type III 93.6 1.4 3E-05 32.7 9.5 78 57-138 16-94 (153)
342 PRK15180 Vi polysaccharide bio 93.6 1.2 2.7E-05 39.5 10.6 128 62-204 300-428 (831)
343 KOG3783|consensus 93.5 5.6 0.00012 36.0 20.2 223 70-302 252-531 (546)
344 PF07720 TPR_3: Tetratricopept 93.5 0.26 5.7E-06 26.7 4.3 31 52-82 2-35 (36)
345 PF11207 DUF2989: Protein of u 93.5 1.2 2.5E-05 35.0 9.4 75 96-174 118-192 (203)
346 COG5107 RNA14 Pre-mRNA 3'-end 93.4 5.4 0.00012 35.4 20.4 70 36-111 290-360 (660)
347 COG5159 RPN6 26S proteasome re 93.2 4.3 9.2E-05 33.8 13.6 54 205-259 129-188 (421)
348 PF07721 TPR_4: Tetratricopept 93.2 0.15 3.3E-06 25.3 2.9 24 202-225 2-25 (26)
349 KOG2422|consensus 93.0 2.6 5.6E-05 38.4 11.9 28 122-149 284-311 (665)
350 COG3914 Spy Predicted O-linked 93.0 0.95 2.1E-05 41.1 9.3 114 186-302 50-183 (620)
351 COG1747 Uncharacterized N-term 93.0 6.8 0.00015 35.4 18.8 183 35-234 87-292 (711)
352 KOG3807|consensus 92.9 5.2 0.00011 34.0 14.4 161 127-301 189-402 (556)
353 PF07721 TPR_4: Tetratricopept 92.9 0.18 3.9E-06 25.0 2.9 23 53-75 3-25 (26)
354 PF07079 DUF1347: Protein of u 92.8 6.6 0.00014 34.9 22.0 46 180-226 475-520 (549)
355 KOG1310|consensus 92.7 0.54 1.2E-05 42.1 7.3 77 182-259 389-468 (758)
356 KOG0890|consensus 92.5 9.4 0.0002 41.0 16.4 35 260-296 1671-1705(2382)
357 COG3629 DnrI DNA-binding trans 92.5 2.4 5.2E-05 35.3 10.4 93 200-295 152-244 (280)
358 PF15015 NYD-SP12_N: Spermatog 92.1 0.67 1.4E-05 40.4 7.0 55 204-259 231-285 (569)
359 PF10579 Rapsyn_N: Rapsyn N-te 92.1 0.92 2E-05 29.5 6.0 50 207-257 12-64 (80)
360 PF12862 Apc5: Anaphase-promot 92.0 0.51 1.1E-05 32.2 5.2 55 180-234 11-74 (94)
361 PRK15180 Vi polysaccharide bio 91.9 1.5 3.2E-05 39.0 9.0 128 97-239 302-429 (831)
362 COG2912 Uncharacterized conser 91.8 1.4 2.9E-05 36.3 8.2 61 180-240 194-254 (269)
363 COG3629 DnrI DNA-binding trans 91.6 0.96 2.1E-05 37.6 7.3 57 54-110 156-213 (280)
364 smart00386 HAT HAT (Half-A-TPR 91.2 0.6 1.3E-05 24.0 4.0 27 216-242 2-28 (33)
365 COG3914 Spy Predicted O-linked 91.1 6.7 0.00014 36.0 12.3 122 33-157 50-175 (620)
366 PF15015 NYD-SP12_N: Spermatog 90.8 7.9 0.00017 34.1 12.0 53 90-146 234-286 (569)
367 KOG2581|consensus 90.6 11 0.00024 33.0 18.9 136 93-235 135-281 (493)
368 KOG4279|consensus 90.2 1.5 3.1E-05 41.3 7.6 161 122-293 201-398 (1226)
369 KOG1839|consensus 89.8 7.7 0.00017 39.0 12.5 123 50-172 972-1111(1236)
370 KOG2581|consensus 89.3 14 0.00031 32.4 15.5 134 61-201 136-281 (493)
371 COG2912 Uncharacterized conser 89.3 1.9 4E-05 35.5 6.9 68 203-296 183-250 (269)
372 KOG0687|consensus 89.1 13 0.00028 31.6 14.0 110 120-233 102-213 (393)
373 KOG1463|consensus 88.6 15 0.00031 31.5 13.9 162 90-259 134-310 (411)
374 TIGR03504 FimV_Cterm FimV C-te 88.4 1.4 3.1E-05 25.1 4.2 27 126-152 3-29 (44)
375 PF10579 Rapsyn_N: Rapsyn N-te 88.2 5.4 0.00012 26.0 7.6 59 129-195 13-71 (80)
376 PF10255 Paf67: RNA polymerase 88.0 1.6 3.4E-05 38.5 6.1 60 90-150 128-192 (404)
377 PF04190 DUF410: Protein of un 87.9 14 0.00031 30.6 14.8 141 49-216 88-243 (260)
378 COG3947 Response regulator con 87.8 2.3 5.1E-05 35.3 6.5 55 204-259 282-336 (361)
379 TIGR03504 FimV_Cterm FimV C-te 87.6 1.4 3.1E-05 25.1 3.9 26 204-229 2-27 (44)
380 COG3947 Response regulator con 87.6 2.2 4.8E-05 35.5 6.3 54 57-110 285-339 (361)
381 PF10373 EST1_DNA_bind: Est1 D 87.4 2.4 5.3E-05 35.3 6.9 43 33-78 1-43 (278)
382 PF11817 Foie-gras_1: Foie gra 86.5 6 0.00013 32.5 8.6 60 89-148 183-244 (247)
383 smart00386 HAT HAT (Half-A-TPR 86.0 1.9 4E-05 22.0 3.7 29 182-210 2-30 (33)
384 PF00244 14-3-3: 14-3-3 protei 85.9 18 0.00038 29.6 17.1 171 54-229 4-197 (236)
385 PF10255 Paf67: RNA polymerase 85.7 1.2 2.5E-05 39.3 4.1 62 202-265 123-194 (404)
386 KOG1463|consensus 85.6 22 0.00048 30.5 14.6 176 55-233 132-319 (411)
387 PF11817 Foie-gras_1: Foie gra 85.4 5.3 0.00011 32.9 7.7 75 182-257 153-239 (247)
388 PHA02537 M terminase endonucle 84.9 19 0.00041 29.1 11.2 56 145-201 154-212 (230)
389 KOG2114|consensus 84.9 39 0.00085 32.7 14.4 31 121-151 367-397 (933)
390 KOG0529|consensus 84.8 27 0.00058 30.8 13.6 101 137-246 90-194 (421)
391 KOG3783|consensus 84.1 34 0.00073 31.3 18.4 57 203-259 451-514 (546)
392 KOG2114|consensus 83.5 25 0.00053 34.0 11.6 39 50-88 367-407 (933)
393 KOG2422|consensus 81.7 44 0.00096 30.9 16.6 158 31-198 255-450 (665)
394 PF12739 TRAPPC-Trs85: ER-Golg 81.0 41 0.00089 30.1 12.9 99 53-151 210-329 (414)
395 PHA02537 M terminase endonucle 79.8 2.3 5E-05 34.3 3.4 33 260-294 170-211 (230)
396 PF14863 Alkyl_sulf_dimr: Alky 79.2 7.2 0.00016 28.9 5.6 50 201-250 70-119 (141)
397 PF14863 Alkyl_sulf_dimr: Alky 78.5 6.3 0.00014 29.2 5.1 47 52-98 71-118 (141)
398 KOG0276|consensus 78.2 20 0.00044 33.3 8.9 105 123-255 615-727 (794)
399 KOG1538|consensus 77.8 26 0.00055 33.0 9.5 47 180-229 786-832 (1081)
400 PF09670 Cas_Cas02710: CRISPR- 77.7 50 0.0011 29.2 13.1 57 56-112 136-197 (379)
401 PF09670 Cas_Cas02710: CRISPR- 77.6 50 0.0011 29.2 12.2 61 90-152 137-199 (379)
402 KOG1497|consensus 77.2 45 0.00098 28.4 11.5 99 52-152 104-214 (399)
403 PF05053 Menin: Menin; InterP 76.7 48 0.001 30.7 10.7 105 161-290 258-367 (618)
404 KOG0687|consensus 76.5 48 0.001 28.4 11.6 104 84-198 104-212 (393)
405 KOG2062|consensus 76.3 75 0.0016 30.5 13.0 179 53-249 469-656 (929)
406 cd02682 MIT_AAA_Arch MIT: doma 75.4 5.6 0.00012 25.7 3.6 38 240-296 11-48 (75)
407 COG3014 Uncharacterized protei 75.3 53 0.0012 28.3 10.6 33 260-294 195-227 (449)
408 COG3014 Uncharacterized protei 74.8 55 0.0012 28.2 13.2 45 31-77 38-84 (449)
409 COG5536 BET4 Protein prenyltra 74.0 32 0.0007 28.7 8.3 134 139-301 91-233 (328)
410 KOG4151|consensus 73.5 18 0.00038 34.5 7.6 104 129-237 60-163 (748)
411 PF12854 PPR_1: PPR repeat 72.4 12 0.00027 19.7 4.1 27 200-226 6-32 (34)
412 smart00671 SEL1 Sel1-like repe 72.3 10 0.00022 19.8 3.8 29 202-230 2-34 (36)
413 KOG4521|consensus 71.5 1.2E+02 0.0027 30.9 16.7 175 53-233 922-1135(1480)
414 smart00299 CLH Clathrin heavy 71.3 34 0.00074 25.0 7.7 43 182-225 22-64 (140)
415 PF08238 Sel1: Sel1 repeat; I 70.4 12 0.00026 20.0 3.9 29 202-230 2-37 (39)
416 COG4455 ImpE Protein of avirul 69.7 28 0.00062 27.9 6.9 54 182-235 16-69 (273)
417 COG5536 BET4 Protein prenyltra 69.6 66 0.0014 26.9 10.9 136 100-244 90-236 (328)
418 TIGR00756 PPR pentatricopeptid 69.4 13 0.00029 18.9 4.1 28 125-152 3-30 (35)
419 PF04190 DUF410: Protein of un 68.5 68 0.0015 26.6 16.3 28 198-225 87-114 (260)
420 PF11846 DUF3366: Domain of un 68.3 27 0.00058 27.3 6.9 51 182-233 126-176 (193)
421 COG1747 Uncharacterized N-term 68.3 99 0.0021 28.5 19.6 209 72-302 87-300 (711)
422 KOG0890|consensus 67.9 2E+02 0.0044 31.9 24.0 101 199-302 1668-1796(2382)
423 KOG0686|consensus 67.7 89 0.0019 27.7 11.5 98 86-195 152-257 (466)
424 PF01535 PPR: PPR repeat; Int 67.0 12 0.00025 18.6 3.2 26 204-229 3-28 (31)
425 KOG0546|consensus 66.5 15 0.00032 31.6 5.1 63 182-244 290-352 (372)
426 KOG0292|consensus 66.3 1.4E+02 0.0031 29.5 11.9 114 126-239 995-1122(1202)
427 COG5107 RNA14 Pre-mRNA 3'-end 65.4 1.1E+02 0.0023 27.8 24.2 45 189-233 290-334 (660)
428 KOG2063|consensus 65.3 1.5E+02 0.0033 29.5 14.0 173 54-229 507-712 (877)
429 COG4455 ImpE Protein of avirul 64.9 57 0.0012 26.3 7.7 55 61-115 11-66 (273)
430 smart00299 CLH Clathrin heavy 64.3 44 0.00096 24.3 7.1 72 211-286 17-107 (140)
431 KOG0276|consensus 63.6 63 0.0014 30.3 8.7 63 187-259 627-689 (794)
432 PF10952 DUF2753: Protein of u 63.5 42 0.00092 24.2 6.1 28 123-150 51-78 (140)
433 KOG4279|consensus 63.4 1.1E+02 0.0023 29.7 10.3 136 88-228 205-348 (1226)
434 KOG2062|consensus 62.9 1.5E+02 0.0033 28.7 13.2 179 31-228 374-564 (929)
435 PF09205 DUF1955: Domain of un 62.4 46 0.001 24.5 6.3 50 182-231 101-150 (161)
436 cd02680 MIT_calpain7_2 MIT: do 62.2 16 0.00035 23.6 3.7 14 98-111 20-33 (75)
437 KOG0546|consensus 61.9 6.9 0.00015 33.5 2.5 57 202-259 276-332 (372)
438 cd02682 MIT_AAA_Arch MIT: doma 61.3 42 0.00091 21.7 7.3 20 56-75 11-30 (75)
439 KOG4521|consensus 59.4 2.2E+02 0.0047 29.3 13.9 33 120-152 918-950 (1480)
440 PF09205 DUF1955: Domain of un 59.2 70 0.0015 23.6 7.0 57 92-152 94-150 (161)
441 PF06957 COPI_C: Coatomer (COP 58.7 1.4E+02 0.003 26.9 12.0 27 210-236 309-335 (422)
442 PF09797 NatB_MDM20: N-acetylt 58.6 65 0.0014 28.2 8.1 42 217-259 199-240 (365)
443 PF13226 DUF4034: Domain of un 58.6 1.1E+02 0.0024 25.7 11.1 65 186-250 62-148 (277)
444 PF04212 MIT: MIT (microtubule 57.9 24 0.00052 22.2 4.0 23 207-229 11-33 (69)
445 KOG2908|consensus 57.3 1.3E+02 0.0028 26.1 11.0 79 93-172 84-168 (380)
446 cd02677 MIT_SNX15 MIT: domain 56.0 18 0.00039 23.4 3.1 14 215-228 20-33 (75)
447 PF02064 MAS20: MAS20 protein 55.8 26 0.00057 25.1 4.2 30 55-84 67-97 (121)
448 PF09797 NatB_MDM20: N-acetylt 55.6 1.1E+02 0.0024 26.8 9.1 46 65-110 197-243 (365)
449 PF12753 Nro1: Nuclear pore co 55.3 20 0.00042 31.5 4.1 32 183-216 334-365 (404)
450 PF02184 HAT: HAT (Half-A-TPR) 55.2 29 0.00062 18.2 3.2 25 217-242 3-27 (32)
451 PF04212 MIT: MIT (microtubule 53.6 42 0.00091 21.0 4.6 23 128-150 11-33 (69)
452 cd02679 MIT_spastin MIT: domai 53.0 27 0.00058 22.9 3.6 33 182-229 4-36 (79)
453 PF13041 PPR_2: PPR repeat fam 52.8 43 0.00093 19.2 6.2 34 123-156 4-37 (50)
454 KOG2561|consensus 52.3 53 0.0011 29.3 6.2 28 260-289 268-295 (568)
455 COG5187 RPN7 26S proteasome re 51.9 1.5E+02 0.0032 25.2 15.9 129 97-233 88-224 (412)
456 smart00101 14_3_3 14-3-3 homol 50.9 1.4E+02 0.003 24.6 19.6 56 54-109 4-64 (244)
457 cd02656 MIT MIT: domain contai 50.8 31 0.00066 22.1 3.7 14 215-228 20-33 (75)
458 PF12309 KBP_C: KIF-1 binding 49.4 1.9E+02 0.0041 25.6 10.7 35 260-296 301-344 (371)
459 PF07219 HemY_N: HemY protein 48.8 71 0.0015 22.3 5.5 24 55-78 63-86 (108)
460 KOG2561|consensus 48.7 81 0.0017 28.3 6.7 102 128-229 169-295 (568)
461 PF14852 Fis1_TPR_N: Fis1 N-te 48.7 39 0.00085 18.1 3.2 33 162-198 3-35 (35)
462 KOG4459|consensus 48.5 2.1E+02 0.0045 25.9 10.2 84 202-288 134-222 (471)
463 PF02064 MAS20: MAS20 protein 47.6 50 0.0011 23.7 4.6 32 205-236 67-98 (121)
464 PF13812 PPR_3: Pentatricopept 47.4 38 0.00083 17.1 4.2 26 125-150 4-29 (34)
465 PF11846 DUF3366: Domain of un 46.8 80 0.0017 24.6 6.2 47 31-81 128-175 (193)
466 PF05053 Menin: Menin; InterP 46.7 61 0.0013 30.0 5.9 27 84-110 318-344 (618)
467 cd02681 MIT_calpain7_1 MIT: do 46.3 47 0.001 21.6 3.9 17 213-229 18-34 (76)
468 PF12309 KBP_C: KIF-1 binding 43.9 2.3E+02 0.005 25.0 12.8 13 160-172 222-234 (371)
469 PF10952 DUF2753: Protein of u 43.6 1.2E+02 0.0027 21.9 9.0 71 54-124 4-94 (140)
470 PRK15490 Vi polysaccharide bio 43.5 2.1E+02 0.0046 26.9 9.0 74 183-259 24-97 (578)
471 PF08626 TRAPPC9-Trs120: Trans 42.6 4.3E+02 0.0092 27.8 14.4 93 136-229 359-473 (1185)
472 cd02681 MIT_calpain7_1 MIT: do 42.6 94 0.002 20.2 7.8 12 64-75 19-30 (76)
473 PF04348 LppC: LppC putative l 42.6 8.2 0.00018 35.8 0.0 102 186-290 8-127 (536)
474 KOG4151|consensus 40.6 1.5E+02 0.0033 28.6 7.7 91 58-152 60-157 (748)
475 PF01239 PPTA: Protein prenylt 40.5 52 0.0011 16.6 4.2 21 188-208 4-24 (31)
476 PF07219 HemY_N: HemY protein 40.2 1.3E+02 0.0027 21.0 6.6 48 202-249 60-107 (108)
477 PF08626 TRAPPC9-Trs120: Trans 40.0 4.7E+02 0.01 27.5 12.7 73 182-255 360-464 (1185)
478 PF04348 LppC: LppC putative l 39.8 9.6 0.00021 35.4 0.0 97 50-147 23-123 (536)
479 PF00244 14-3-3: 14-3-3 protei 38.6 2.2E+02 0.0047 23.3 13.5 59 88-149 5-64 (236)
480 COG4941 Predicted RNA polymera 38.0 2.7E+02 0.0059 24.2 9.9 35 261-297 367-401 (415)
481 KOG4056|consensus 37.3 93 0.002 22.9 4.5 30 55-84 85-115 (143)
482 COG5187 RPN7 26S proteasome re 37.1 2.6E+02 0.0057 23.8 16.9 133 55-199 79-224 (412)
483 PF04762 IKI3: IKI3 family; I 35.2 2.2E+02 0.0047 28.9 8.3 127 188-323 799-928 (928)
484 PF12753 Nro1: Nuclear pore co 35.2 71 0.0015 28.2 4.4 51 99-149 333-389 (404)
485 COG2015 Alkyl sulfatase and re 32.7 98 0.0021 28.2 4.9 49 54-102 455-504 (655)
486 cd02683 MIT_1 MIT: domain cont 32.0 1.5E+02 0.0032 19.3 7.7 13 63-75 18-30 (77)
487 TIGR02710 CRISPR-associated pr 31.8 3.7E+02 0.008 23.9 12.9 58 90-147 136-196 (380)
488 TIGR00985 3a0801s04tom mitocho 30.6 89 0.0019 23.4 3.8 31 55-85 94-126 (148)
489 KOG1938|consensus 30.5 5.2E+02 0.011 26.0 9.5 118 31-152 241-385 (960)
490 PF10938 YfdX: YfdX protein; 29.9 2.4E+02 0.0053 21.2 8.4 50 237-289 77-145 (155)
491 cd00280 TRFH Telomeric Repeat 29.9 2.8E+02 0.006 21.8 8.4 21 181-202 125-145 (200)
492 PF13934 ELYS: Nuclear pore co 29.7 3E+02 0.0066 22.2 9.5 101 33-148 65-166 (226)
493 cd00280 TRFH Telomeric Repeat 29.3 2.8E+02 0.0061 21.8 8.9 76 182-259 84-167 (200)
494 TIGR02996 rpt_mate_G_obs repea 29.0 1.2E+02 0.0025 17.2 3.8 29 74-102 5-34 (42)
495 smart00745 MIT Microtubule Int 28.9 1.6E+02 0.0035 18.8 7.4 15 61-75 18-32 (77)
496 KOG1920|consensus 28.1 7E+02 0.015 26.0 13.4 60 91-150 959-1027(1265)
497 PF15297 CKAP2_C: Cytoskeleton 28.0 2.5E+02 0.0055 24.4 6.4 30 85-114 141-170 (353)
498 COG4259 Uncharacterized protei 27.7 2.1E+02 0.0046 19.8 6.8 51 187-237 57-108 (121)
499 KOG1938|consensus 27.6 6.5E+02 0.014 25.4 10.9 166 58-231 183-385 (960)
500 PF07378 FlbT: Flagellar prote 27.0 67 0.0015 23.3 2.6 61 260-322 53-117 (126)
No 1
>KOG4626|consensus
Probab=100.00 E-value=1.8e-36 Score=259.39 Aligned_cols=287 Identities=16% Similarity=0.182 Sum_probs=199.4
Q ss_pred ccccccchhhhHhHHHHH-----HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchh
Q psy8160 13 IVTSVRVPKLQQFGKTLN-----IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTF 86 (324)
Q Consensus 13 ~~~~~~~~~l~~~~~~~~-----~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~ 86 (324)
..+|+.++...+++.++. .+|...|.++++.+|.+.. +|..||.++..+|+.-.|+.+|++++ +||....+
T Consensus 178 qlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAi---awsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dA 254 (966)
T KOG4626|consen 178 QLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAI---AWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDA 254 (966)
T ss_pred hcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceee---eehhcchHHhhcchHHHHHHHHHHhhcCCCcchHH
Confidence 455666666555555555 6777777777777776533 56777777777777777777777777 77777777
Q ss_pred hHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHH
Q psy8160 87 TKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQL 166 (324)
Q Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 166 (324)
+..||.+|...+.|+.|+.+|.+++...|... .++-++|-+|..+|..+-|+.+|+++++.. |+. .+++.++
T Consensus 255 YiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A----~a~gNla~iYyeqG~ldlAI~~Ykral~~~--P~F--~~Ay~Nl 326 (966)
T KOG4626|consen 255 YINLGNVYKEARIFDRAVSCYLRALNLRPNHA----VAHGNLACIYYEQGLLDLAIDTYKRALELQ--PNF--PDAYNNL 326 (966)
T ss_pred HhhHHHHHHHHhcchHHHHHHHHHHhcCCcch----hhccceEEEEeccccHHHHHHHHHHHHhcC--CCc--hHHHhHH
Confidence 77777777777777777777777776666654 666677777777777777777777777776 665 3377777
Q ss_pred HHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHh
Q psy8160 167 GWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDF 246 (324)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 246 (324)
|..... .|+..+|..+|.+++.+.|..+++.++||.++.++|++++|...|.++++..|..+.+..+||.+|.
T Consensus 327 anALkd-------~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~k 399 (966)
T KOG4626|consen 327 ANALKD-------KGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYK 399 (966)
T ss_pred HHHHHh-------ccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHH
Confidence 766643 3467777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHH
Q psy8160 247 SNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQA 315 (324)
Q Consensus 247 ~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a 315 (324)
++|+ +++|+.+| +++.++|.+|..+|+.+. |+.+|.+|+..+|....+.+||+.+. ...|+..+|
T Consensus 400 qqgn-l~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~--A~q~y~rAI~~nPt~AeAhsNLasi~-kDsGni~~A 475 (966)
T KOG4626|consen 400 QQGN-LDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA--AIQCYTRAIQINPTFAEAHSNLASIY-KDSGNIPEA 475 (966)
T ss_pred hccc-HHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH--HHHHHHHHHhcCcHHHHHHhhHHHHh-hccCCcHHH
Confidence 7777 77777777 666777777777777777 77777777777777777777766543 345666666
Q ss_pred HHHHhh
Q psy8160 316 LNKYRD 321 (324)
Q Consensus 316 ~~~~~~ 321 (324)
+..|+.
T Consensus 476 I~sY~~ 481 (966)
T KOG4626|consen 476 IQSYRT 481 (966)
T ss_pred HHHHHH
Confidence 666654
No 2
>KOG4626|consensus
Probab=100.00 E-value=1.1e-35 Score=254.66 Aligned_cols=268 Identities=18% Similarity=0.212 Sum_probs=250.0
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
..|+..|+++++++|+|+ ++|++||.+|...+.|+.|+.+|.+++ ..|.+..++..+|-+|..+|..+-|+.+|++
T Consensus 235 ~~aiq~y~eAvkldP~f~---dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykr 311 (966)
T KOG4626|consen 235 WLAIQHYEEAVKLDPNFL---DAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKR 311 (966)
T ss_pred HHHHHHHHHhhcCCCcch---HHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHH
Confidence 889999999999999875 479999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHH
Q psy8160 110 CLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHC 189 (324)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~ 189 (324)
++...|... +++.++|..+...|+..+|+.+|.+++... |.+ +++..++|.++.. .+..++|..+
T Consensus 312 al~~~P~F~----~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--p~h--adam~NLgni~~E-------~~~~e~A~~l 376 (966)
T KOG4626|consen 312 ALELQPNFP----DAYNNLANALKDKGSVTEAVDCYNKALRLC--PNH--ADAMNNLGNIYRE-------QGKIEEATRL 376 (966)
T ss_pred HHhcCCCch----HHHhHHHHHHHhccchHHHHHHHHHHHHhC--Ccc--HHHHHHHHHHHHH-------hccchHHHHH
Confidence 999999887 899999999999999999999999999999 988 7799999999987 4489999999
Q ss_pred HHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH----------
Q psy8160 190 LQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL---------- 259 (324)
Q Consensus 190 ~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~---------- 259 (324)
|.++++..|..+.+..+||.+|.++|++++|+.+|+.++.+.|..++++.++|..|..+|+ ...|+++|
T Consensus 377 y~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~-v~~A~q~y~rAI~~nPt~ 455 (966)
T KOG4626|consen 377 YLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD-VSAAIQCYTRAIQINPTF 455 (966)
T ss_pred HHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh-HHHHHHHHHHHHhcCcHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred -HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhcc--CChhhHHHHHHHH
Q psy8160 260 -NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNN--SNREDYHQALNKY 319 (324)
Q Consensus 260 -~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--~~~~~~~~a~~~~ 319 (324)
+++.+||.+|...|+..+ ||..|+.++++.|+.|.+--|+..-.. ....||++-+.+.
T Consensus 456 AeAhsNLasi~kDsGni~~--AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl 516 (966)
T KOG4626|consen 456 AEAHSNLASIYKDSGNIPE--AIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKL 516 (966)
T ss_pred HHHHhhHHHHhhccCCcHH--HHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHH
Confidence 899999999999999999 999999999999999998877754322 4556666555443
No 3
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.97 E-value=7.3e-29 Score=229.73 Aligned_cols=273 Identities=14% Similarity=0.084 Sum_probs=207.3
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
++|+..|++++++.|+ +..+..+|.||..+|++++|+..+.+++ .+|++..++..+|.++...|++++|+..|..
T Consensus 144 ~~Ai~~y~~al~~~p~----~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~ 219 (615)
T TIGR00990 144 NKAIKLYSKAIECKPD----PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTA 219 (615)
T ss_pred HHHHHHHHHHHhcCCc----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999985 3478999999999999999999999999 9999999999999999999999999876654
Q ss_pred HHHhcC------------------------------CC------------------------------------------
Q psy8160 110 CLIDAS------------------------------PC------------------------------------------ 117 (324)
Q Consensus 110 ~l~~~~------------------------------~~------------------------------------------ 117 (324)
++...+ ..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (615)
T TIGR00990 220 SCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGL 299 (615)
T ss_pred HHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHH
Confidence 321110 00
Q ss_pred ---------------------------cccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHH
Q psy8160 118 ---------------------------TFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMY 170 (324)
Q Consensus 118 ---------------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~ 170 (324)
......++..+|.++...|++++|+..|++++..+ |.. ..++..+|.++
T Consensus 300 ~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~--P~~--~~~~~~la~~~ 375 (615)
T TIGR00990 300 KSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD--PRV--TQSYIKRASMN 375 (615)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCc--HHHHHHHHHHH
Confidence 00112346667777777888888888888888877 766 34777788777
Q ss_pred HhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCC
Q psy8160 171 HCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNS 250 (324)
Q Consensus 171 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 250 (324)
.. .+++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|++++.++|++...|..+|.++...|+
T Consensus 376 ~~-------~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~ 448 (615)
T TIGR00990 376 LE-------LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS 448 (615)
T ss_pred HH-------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCC
Confidence 65 44788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhh------hccCChhhHH
Q psy8160 251 NREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDF------SNNSNREDYH 313 (324)
Q Consensus 251 ~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~------~~~~~~~~~~ 313 (324)
+++|+..| .++..+|.++...|++++ |+..|+++++++|++..+..+... ......+++.
T Consensus 449 -~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~--A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~ 525 (615)
T TIGR00990 449 -IASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDE--AIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFI 525 (615)
T ss_pred -HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHH--HHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHH
Confidence 88888877 677788888888888888 888888888888765443322211 1112246677
Q ss_pred HHHHHHhh
Q psy8160 314 QALNKYRD 321 (324)
Q Consensus 314 ~a~~~~~~ 321 (324)
+|+..+++
T Consensus 526 eA~~~~~k 533 (615)
T TIGR00990 526 EAENLCEK 533 (615)
T ss_pred HHHHHHHH
Confidence 77766654
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.97 E-value=1.4e-28 Score=227.94 Aligned_cols=285 Identities=16% Similarity=0.117 Sum_probs=241.1
Q ss_pred ccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-c------------
Q psy8160 15 TSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-I------------ 79 (324)
Q Consensus 15 ~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~------------ 79 (324)
++..+.+++...+.++ ++|++.+.++++++|++ ..+++.+|.+|..+|++++|+..|..++ .
T Consensus 159 ~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~---~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~ 235 (615)
T TIGR00990 159 DPVYYSNRAACHNALGDWEKVVEDTTAALELDPDY---SKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAV 235 (615)
T ss_pred chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 5667777777666666 99999999999999874 4578889999888888888876554332 1
Q ss_pred --------------------------------------------------------------------------------
Q psy8160 80 -------------------------------------------------------------------------------- 79 (324)
Q Consensus 80 -------------------------------------------------------------------------------- 79 (324)
T Consensus 236 ~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~ 315 (615)
T TIGR00990 236 ERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAAR 315 (615)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHH
Confidence
Q ss_pred -----------CCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy8160 80 -----------DASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQL 148 (324)
Q Consensus 80 -----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 148 (324)
+|....++..+|.++...|++++|+..|++++...|... ..+..+|.++...|++++|+..|+++
T Consensus 316 ~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~----~~~~~la~~~~~~g~~~eA~~~~~~a 391 (615)
T TIGR00990 316 AFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT----QSYIKRASMNLELGDPDKAEEDFDKA 391 (615)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 123333455578888889999999999999999888765 78999999999999999999999999
Q ss_pred HhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8160 149 LKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSV 228 (324)
Q Consensus 149 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 228 (324)
+..+ |++ +.+++.+|.+++. .|++++|+.+|+++++++|++...++.+|.++..+|++++|+..|++++
T Consensus 392 l~~~--p~~--~~~~~~lg~~~~~-------~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al 460 (615)
T TIGR00990 392 LKLN--SED--PDIYYHRAQLHFI-------KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCK 460 (615)
T ss_pred HHhC--CCC--HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9998 887 5599999999977 5599999999999999999999999999999999999999999999999
Q ss_pred ccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------H------HHHhh-HHHHHHcCCCCcchHHHHHHHhhhc
Q psy8160 229 EKSEGNADTWCSIGNKDFSNNSNREDYHQAL-----------N------KYRDL-GDFLVINNIPTSNNNRQCYNSYSTS 290 (324)
Q Consensus 229 ~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~------~~~~l-g~~~~~~~~~~~~~A~~~~~~al~~ 290 (324)
...|+++.++..+|.++...|+ +++|+..| . .+... +.++...|++++ |+..|++++++
T Consensus 461 ~~~P~~~~~~~~lg~~~~~~g~-~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~e--A~~~~~kAl~l 537 (615)
T TIGR00990 461 KNFPEAPDVYNYYGELLLDQNK-FDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIE--AENLCEKALII 537 (615)
T ss_pred HhCCCChHHHHHHHHHHHHccC-HHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHH--HHHHHHHHHhc
Confidence 9999999999999999999999 99999998 1 11222 334455799999 99999999999
Q ss_pred CCChhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 291 IASCKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 291 ~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
+|++..+...++.+. ...|++++|+..|..
T Consensus 538 ~p~~~~a~~~la~~~-~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 538 DPECDIAVATMAQLL-LQQGDVDEALKLFER 567 (615)
T ss_pred CCCcHHHHHHHHHHH-HHccCHHHHHHHHHH
Confidence 999988888887664 457889999888865
No 5
>KOG1126|consensus
Probab=99.96 E-value=3e-28 Score=211.15 Aligned_cols=246 Identities=19% Similarity=0.166 Sum_probs=226.6
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-c------------------------------
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-I------------------------------ 79 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~------------------------------ 79 (324)
++|+..|.+.-+..++ ...+...+|..|+.+++|++|.++|+.+- .
T Consensus 336 ~~A~~~~~klp~h~~n---t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 336 REALNLFEKLPSHHYN---TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHhhHHhcCC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 8999999995555544 34688999999999999999999999886 4
Q ss_pred ----CCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q psy8160 80 ----DASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLP 155 (324)
Q Consensus 80 ----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 155 (324)
+|..+..|-.+|++|..+++++.|+++|++++..+|... -++..+|+-+....++++|..+|+.++..+ |
T Consensus 413 Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~fa----YayTLlGhE~~~~ee~d~a~~~fr~Al~~~--~ 486 (638)
T KOG1126|consen 413 LIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFA----YAYTLLGHESIATEEFDKAMKSFRKALGVD--P 486 (638)
T ss_pred HHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccc----hhhhhcCChhhhhHHHHhHHHHHHhhhcCC--c
Confidence 677777788899999999999999999999999999776 678899999999999999999999999999 9
Q ss_pred CchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q psy8160 156 VHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA 235 (324)
Q Consensus 156 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 235 (324)
.++. +|+++|.+|.+ +++++.|+.+|++|++++|.+....+.+|.++...|+.++|+..|++|+.++|.++
T Consensus 487 rhYn--AwYGlG~vy~K-------qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~ 557 (638)
T KOG1126|consen 487 RHYN--AWYGLGTVYLK-------QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP 557 (638)
T ss_pred hhhH--HHHhhhhheec-------cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
Confidence 9866 99999999987 55999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhh
Q psy8160 236 DTWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHI 297 (324)
Q Consensus 236 ~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 297 (324)
-..+..|.+++..++ +++|+..+ .+++.+|.+|.+.|+.+. |+..|.-|++++|.-.++
T Consensus 558 l~~~~~~~il~~~~~-~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~--Al~~f~~A~~ldpkg~~i 627 (638)
T KOG1126|consen 558 LCKYHRASILFSLGR-YVEALQELEELKELVPQESSVFALLGKIYKRLGNTDL--ALLHFSWALDLDPKGAQI 627 (638)
T ss_pred hhHHHHHHHHHhhcc-hHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchH--HHHhhHHHhcCCCccchh
Confidence 999999999999999 99999888 789999999999999999 999999999999975543
No 6
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=5e-27 Score=217.32 Aligned_cols=295 Identities=9% Similarity=-0.014 Sum_probs=233.3
Q ss_pred HHHHhhhhccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCC
Q psy8160 5 IQKNLVEGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDA 81 (324)
Q Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~ 81 (324)
++..+...+.+++....++-..+..+ ++|++.|++++.++|+. .+++..+|.++...|++++|+..|++++ .+|
T Consensus 65 ~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~---~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P 141 (656)
T PRK15174 65 LSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQ---PEDVLLVASVLLKSKQYATVADLAEQAWLAFS 141 (656)
T ss_pred hHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 45556666777777777776555444 99999999999999874 4578999999999999999999999999 999
Q ss_pred CCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhH
Q psy8160 82 SPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKAD 161 (324)
Q Consensus 82 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 161 (324)
++..++..++.++...|++++|+..+++++...|... .++..++ .+...|++++|+..+++++..+ |... ..
T Consensus 142 ~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~----~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~--~~~~-~~ 213 (656)
T PRK15174 142 GNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRG----DMIATCL-SFLNKSRLPEDHDLARALLPFF--ALER-QE 213 (656)
T ss_pred CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCH----HHHHHHH-HHHHcCCHHHHHHHHHHHHhcC--CCcc-hh
Confidence 9999999999999999999999999998888777664 4454443 3677888888888888887776 3221 11
Q ss_pred HHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHH----HHHHHHHHHccCCCCHHH
Q psy8160 162 ICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHD----AFLAYRNSVEKSEGNADT 237 (324)
Q Consensus 162 ~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~----A~~~~~~al~~~p~~~~~ 237 (324)
....++.++.. .+++++|+..++++++.+|+++.+++.+|.++...|++++ |+..|++++..+|+++.+
T Consensus 214 ~~~~l~~~l~~-------~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a 286 (656)
T PRK15174 214 SAGLAVDTLCA-------VGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRI 286 (656)
T ss_pred HHHHHHHHHHH-------CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHH
Confidence 33344555544 4488888888888888888888888888888888888875 788888888888888888
Q ss_pred HHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhcc
Q psy8160 238 WCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNN 306 (324)
Q Consensus 238 ~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 306 (324)
+..+|.++...|+ +++|+..+ .++..+|.++...|++++ |+..|+++++.+|+++.....++.. .
T Consensus 287 ~~~lg~~l~~~g~-~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~e--A~~~l~~al~~~P~~~~~~~~~a~a-l 362 (656)
T PRK15174 287 VTLYADALIRTGQ-NEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTA--ASDEFVQLAREKGVTSKWNRYAAAA-L 362 (656)
T ss_pred HHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHhCccchHHHHHHHHH-H
Confidence 8888888888888 88888888 677888888888888888 8888888888888876655444332 2
Q ss_pred CChhhHHHHHHHHhh
Q psy8160 307 SNREDYHQALNKYRD 321 (324)
Q Consensus 307 ~~~~~~~~a~~~~~~ 321 (324)
...|++++|+..|+.
T Consensus 363 ~~~G~~deA~~~l~~ 377 (656)
T PRK15174 363 LQAGKTSEAESVFEH 377 (656)
T ss_pred HHCCCHHHHHHHHHH
Confidence 456778888877765
No 7
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=8.3e-26 Score=209.24 Aligned_cols=271 Identities=11% Similarity=-0.012 Sum_probs=236.7
Q ss_pred HHHHHhhhhccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cC
Q psy8160 4 VIQKNLVEGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-ID 80 (324)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~ 80 (324)
.+++.+...+.++..+..++.+....+ ++|+..|.+++.++|+ ...++..+|.++...|++++|+..+++++ .+
T Consensus 98 ~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~---~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 98 VVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG---NSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 345666677778888878887666656 9999999999999987 45689999999999999999999999998 89
Q ss_pred CCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhh
Q psy8160 81 ASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKA 160 (324)
Q Consensus 81 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 160 (324)
|.+..++..++ .+...|++++|+..+++++...|... ......++.++...|++++|+..|++++..+ |++ +
T Consensus 175 P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~---~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~--p~~--~ 246 (656)
T PRK15174 175 PPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALER---QESAGLAVDTLCAVGKYQEAIQTGESALARG--LDG--A 246 (656)
T ss_pred CCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcc---hhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCC--H
Confidence 99888776654 47888999999999999988765432 1344566888999999999999999999998 887 5
Q ss_pred HHHHHHHHHHHhhhhhcccchhHHH----HHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q psy8160 161 DICRQLGWMYHCIDTLGEKSHRETL----AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNAD 236 (324)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~~~~~~~~----A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 236 (324)
.++..+|.++.. .|++++ |+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+++.
T Consensus 247 ~~~~~Lg~~l~~-------~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~ 319 (656)
T PRK15174 247 ALRRSLGLAYYQ-------SGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPY 319 (656)
T ss_pred HHHHHHHHHHHH-------cCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 599999999977 336664 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChh
Q psy8160 237 TWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCK 295 (324)
Q Consensus 237 ~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (324)
++..+|.++...|+ +++|+..| ..+..+|.++...|++++ |+..|+++++.+|++.
T Consensus 320 a~~~La~~l~~~G~-~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~de--A~~~l~~al~~~P~~~ 386 (656)
T PRK15174 320 VRAMYARALRQVGQ-YTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSE--AESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHHCCC-HHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHH--HHHHHHHHHHhChhhc
Confidence 99999999999999 99999999 345567999999999999 9999999999999975
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=6.7e-26 Score=222.77 Aligned_cols=276 Identities=16% Similarity=0.131 Sum_probs=231.1
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchh--------------hHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTF--------------TKLEGLMFK 95 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~--------------~~~la~~~~ 95 (324)
++|+..|+++++.+|+ +.++++.+|.++..+|++++|+.+|++++ .+|++... ...+|.++.
T Consensus 286 ~~A~~~l~~aL~~~P~---~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~ 362 (1157)
T PRK11447 286 GKAIPELQQAVRANPK---DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL 362 (1157)
T ss_pred HHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999999999986 45689999999999999999999999999 88877532 123578888
Q ss_pred hcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhh-
Q psy8160 96 VNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCID- 174 (324)
Q Consensus 96 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~- 174 (324)
..|++++|+..|++++...|... .++..+|.++...|++++|+..|++++..+ |++. .++..++.++....
T Consensus 363 ~~g~~~eA~~~~~~Al~~~P~~~----~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~--~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 363 KANNLAQAERLYQQARQVDNTDS----YAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNT--NAVRGLANLYRQQSP 434 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCH--HHHHHHHHHHHhcCH
Confidence 99999999999999999988765 789999999999999999999999999998 8773 36666666653100
Q ss_pred -------------------------------hhc---ccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHH
Q psy8160 175 -------------------------------TLG---EKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDA 220 (324)
Q Consensus 175 -------------------------------~~~---~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A 220 (324)
..+ ...+++++|+..|+++++.+|+++.+++.+|.++...|++++|
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A 514 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQA 514 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 000 0246899999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------------------------------------
Q psy8160 221 FLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL----------------------------------------- 259 (324)
Q Consensus 221 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~----------------------------------------- 259 (324)
+..+++++..+|+++..++.+|..+...++ +++|+..+
T Consensus 515 ~~~l~~al~~~P~~~~~~~a~al~l~~~~~-~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~ 593 (1157)
T PRK11447 515 DALMRRLAQQKPNDPEQVYAYGLYLSGSDR-DRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAE 593 (1157)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999888777766665555 55554443
Q ss_pred ----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 260 ----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 260 ----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
.++..+|.++...|++++ |+..|+++++.+|+++.++.++..+. ...+++++|+..++.
T Consensus 594 ~~l~~~p~~~~~~~~La~~~~~~g~~~~--A~~~y~~al~~~P~~~~a~~~la~~~-~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 594 ALLRQQPPSTRIDLTLADWAQQRGDYAA--ARAAYQRVLTREPGNADARLGLIEVD-IAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHhCCCCchHHHHHHHHHHHcCCHHH--HHHHHHHHHHhCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHH
Confidence 356788999999999999 99999999999999998888887654 345888888887764
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.96 E-value=6e-26 Score=219.72 Aligned_cols=286 Identities=16% Similarity=0.096 Sum_probs=204.7
Q ss_pred ccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHH
Q psy8160 13 IVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKL 89 (324)
Q Consensus 13 ~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~ 89 (324)
+.++..+..++.+....+ ++|++.|+++++..|+. ..++..+|.++...|++++|+..|++++ .+|++...+..
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 674 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDS---ALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIG 674 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 333444444444333333 55555555555555442 2345555555555666666666666655 55555555555
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWM 169 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~ 169 (324)
++.++...|++++|+..++.+....|... .++..+|.++...|++++|+..|++++... |+. .++..++.+
T Consensus 675 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~---~~~~~l~~~ 745 (899)
T TIGR02917 675 LAQLLLAAKRTESAKKIAKSLQKQHPKAA----LGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSS---QNAIKLHRA 745 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCCh----HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCc---hHHHHHHHH
Confidence 56666666666666665555555544443 566777888888888888888888888777 554 366677777
Q ss_pred HHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcC
Q psy8160 170 YHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNN 249 (324)
Q Consensus 170 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 249 (324)
+.. .|++++|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|
T Consensus 746 ~~~-------~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 818 (899)
T TIGR02917 746 LLA-------SGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK 818 (899)
T ss_pred HHH-------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 755 4488888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHH
Q psy8160 250 SNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNK 318 (324)
Q Consensus 250 ~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~ 318 (324)
+ .+ |+..+ ..+..+|.++...|++++ |+..|+++++.+|+++.+..++..+. ...|++++|+..
T Consensus 819 ~-~~-A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--A~~~~~~a~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~ 893 (899)
T TIGR02917 819 D-PR-ALEYAEKALKLAPNIPAILDTLGWLLVEKGEADR--ALPLLRKAVNIAPEAAAIRYHLALAL-LATGRKAEARKE 893 (899)
T ss_pred c-HH-HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHH--HHHHHHHHHhhCCCChHHHHHHHHHH-HHcCCHHHHHHH
Confidence 7 44 87777 567788999999999999 99999999999999888888887653 456888998888
Q ss_pred Hhhc
Q psy8160 319 YRDL 322 (324)
Q Consensus 319 ~~~~ 322 (324)
++++
T Consensus 894 ~~~~ 897 (899)
T TIGR02917 894 LDKL 897 (899)
T ss_pred HHHH
Confidence 8765
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=9.2e-26 Score=221.81 Aligned_cols=303 Identities=17% Similarity=0.122 Sum_probs=217.5
Q ss_pred HHHHhhhhccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccch-----------HHHHHHHHHHHHhccHHHHH
Q psy8160 5 IQKNLVEGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRAN-----------EVHLRLGLMFKVNNEYDSAL 71 (324)
Q Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~-----------~~~~~lg~~~~~~~~~~~A~ 71 (324)
+++.+...+.+++....||.+.+..+ ++|+..|+++++++|+.+... .....+|.++...|++++|+
T Consensus 292 l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~ 371 (1157)
T PRK11447 292 LQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAE 371 (1157)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHH
Confidence 45556666677777777777666655 999999999999999754311 12345688889999999999
Q ss_pred HHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccH-----------------------------
Q psy8160 72 KHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTK----------------------------- 121 (324)
Q Consensus 72 ~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~----------------------------- 121 (324)
..|++++ .+|.+..++..+|.++...|++++|++.|++++...|.+....
T Consensus 372 ~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 372 RLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHH
Confidence 9999999 9999999999999999999999999999999998877754210
Q ss_pred ---------HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHH
Q psy8160 122 ---------LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQK 192 (324)
Q Consensus 122 ---------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~ 192 (324)
...+..+|.++...|++++|+..|++++..+ |++ ..+++.+|.++.. .|++++|+..+++
T Consensus 452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--P~~--~~~~~~LA~~~~~-------~G~~~~A~~~l~~ 520 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--PGS--VWLTYRLAQDLRQ-------AGQRSQADALMRR 520 (1157)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCC--HHHHHHHHHHHHH-------cCCHHHHHHHHHH
Confidence 0112234566667899999999999999999 887 4488899998866 4588888888888
Q ss_pred HhhhCCccHHHHH-------------------------------------------------------------------
Q psy8160 193 SIEADPKSGQSLY------------------------------------------------------------------- 205 (324)
Q Consensus 193 al~~~~~~~~~~~------------------------------------------------------------------- 205 (324)
+++.+|.++..++
T Consensus 521 al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p 600 (1157)
T PRK11447 521 LAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQP 600 (1157)
T ss_pred HHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 8887777665443
Q ss_pred -------HHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHH
Q psy8160 206 -------LLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGD 267 (324)
Q Consensus 206 -------~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~ 267 (324)
.+|.++...|++++|+..|++++..+|++++++..+|.++...|+ +++|++.| .++..+|.
T Consensus 601 ~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~-~~eA~~~l~~ll~~~p~~~~~~~~la~ 679 (1157)
T PRK11447 601 PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGD-LAAARAQLAKLPATANDSLNTQRRVAL 679 (1157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 455555666666667777777777777777777777777777777 77776666 45556666
Q ss_pred HHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchh-----hhccCChhhHHHHHHHHhh
Q psy8160 268 FLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKD-----FSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 268 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~-----~~~~~~~~~~~~a~~~~~~ 321 (324)
++...|++++ |++.|++++...|+++....... .......|++.+|+..|++
T Consensus 680 ~~~~~g~~~e--A~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 680 AWAALGDTAA--AQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKD 736 (1157)
T ss_pred HHHhCCCHHH--HHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6766777777 77777777666655443211110 1112555677777766664
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.95 E-value=1.7e-25 Score=216.62 Aligned_cols=290 Identities=14% Similarity=0.129 Sum_probs=196.7
Q ss_pred hhhccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchh
Q psy8160 10 VEGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTF 86 (324)
Q Consensus 10 ~~~~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~ 86 (324)
...+.++..+..++.+....+ ++|++.|.++++.+|+. ..+++.+|.++...|++++|++.|++++ .+|.+...
T Consensus 459 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 535 (899)
T TIGR02917 459 KKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDF---FPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRA 535 (899)
T ss_pred HhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHH
Confidence 334455666666666555445 88999999999888763 4477888888888888888888888888 88888888
Q ss_pred hHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHH
Q psy8160 87 TKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQL 166 (324)
Q Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 166 (324)
+..++.++...|++++|+..+++++...|... ..+..++.++...|++++|+..+++++... |.+ ..++..+
T Consensus 536 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~l 607 (899)
T TIGR02917 536 ILALAGLYLRTGNEEEAVAWLEKAAELNPQEI----EPALALAQYYLGKGQLKKALAILNEAADAA--PDS--PEAWLML 607 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccch----hHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCC--HHHHHHH
Confidence 88888888888888888888888877766554 566677777777777777777777777666 655 3377777
Q ss_pred HHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHh
Q psy8160 167 GWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDF 246 (324)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 246 (324)
|.++.. .+++++|+..|+++++..|.++.++..+|.++...|++++|+..|++++..+|+++.+|..++.++.
T Consensus 608 ~~~~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 680 (899)
T TIGR02917 608 GRAQLA-------AGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLL 680 (899)
T ss_pred HHHHHH-------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 777755 3477777777777777777777777777777777777777777777777777776555555555555
Q ss_pred hcCCCHHHHHHHH--------------------------------------------HHHHhhHHHHHHcCCCCcchHHH
Q psy8160 247 SNNSNREDYHQAL--------------------------------------------NKYRDLGDFLVINNIPTSNNNRQ 282 (324)
Q Consensus 247 ~~~~~~~~A~~~~--------------------------------------------~~~~~lg~~~~~~~~~~~~~A~~ 282 (324)
..|+ +++|+..+ .++..++.++...|++++ |+.
T Consensus 681 ~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--A~~ 757 (899)
T TIGR02917 681 AAKR-TESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAE--AVK 757 (899)
T ss_pred HcCC-HHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHH--HHH
Confidence 5555 55554444 233444555555555555 555
Q ss_pred HHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 283 CYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 283 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
.++++++.+|+++.+...++.+. ...|++.+|+..|+.
T Consensus 758 ~~~~~l~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~ 795 (899)
T TIGR02917 758 TLEAWLKTHPNDAVLRTALAELY-LAQKDYDKAIKHYRT 795 (899)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHH-HHCcCHHHHHHHHHH
Confidence 55555555555555554444332 234555666555543
No 12
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.95 E-value=7e-25 Score=193.13 Aligned_cols=272 Identities=19% Similarity=0.158 Sum_probs=228.4
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCC-----chhhHHHHHHHHhcccHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASP-----CTFTKLEGLMFKVNNEYDSALK 105 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~la~~~~~~~~~~~A~~ 105 (324)
++|+..|.++++.+|+ +.++++.+|.++...|++++|+..+++++..|.. ...+..+|.++...|++++|+.
T Consensus 52 ~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~ 128 (389)
T PRK11788 52 DKAIDLFIEMLKVDPE---TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEE 128 (389)
T ss_pred HHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 8999999999999986 4568999999999999999999999998843332 2456678999999999999999
Q ss_pred HHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh---hHHHHHHHHHHHhhhhhcccchh
Q psy8160 106 HLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK---ADICRQLGWMYHCIDTLGEKSHR 182 (324)
Q Consensus 106 ~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~ 182 (324)
.|++++...|... .++..++.++...|++++|++.+++++... |.... ...+..+|.++.. .++
T Consensus 129 ~~~~~l~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~-------~~~ 195 (389)
T PRK11788 129 LFLQLVDEGDFAE----GALQQLLEIYQQEKDWQKAIDVAERLEKLG--GDSLRVEIAHFYCELAQQALA-------RGD 195 (389)
T ss_pred HHHHHHcCCcchH----HHHHHHHHHHHHhchHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHh-------CCC
Confidence 9999997755543 788999999999999999999999999877 43321 3345667777755 459
Q ss_pred HHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-HHHHHHhHHHHhhcCCCHHHHHHHH--
Q psy8160 183 ETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN-ADTWCSIGNKDFSNNSNREDYHQAL-- 259 (324)
Q Consensus 183 ~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~~~~~A~~~~-- 259 (324)
+++|+..++++++.+|.+..+++.+|.++...|++++|+..+++++..+|.+ +.++..++.+|...|+ +++|+..+
T Consensus 196 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~-~~~A~~~l~~ 274 (389)
T PRK11788 196 LDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD-EAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC-HHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999876 4678899999999999 99999988
Q ss_pred --------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccC-ChhhHHHHHHHHhh
Q psy8160 260 --------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNS-NREDYHQALNKYRD 321 (324)
Q Consensus 260 --------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~~a~~~~~~ 321 (324)
..+..+|.++...|++++ |+..++++++..|+++.+...+...... ..|+..+++..+++
T Consensus 275 ~~~~~p~~~~~~~la~~~~~~g~~~~--A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~ 343 (389)
T PRK11788 275 ALEEYPGADLLLALAQLLEEQEGPEA--AQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRD 343 (389)
T ss_pred HHHhCCCchHHHHHHHHHHHhCCHHH--HHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHH
Confidence 456889999999999999 9999999999999998776555443211 13455566655543
No 13
>KOG1155|consensus
Probab=99.94 E-value=2.1e-24 Score=179.87 Aligned_cols=239 Identities=15% Similarity=0.148 Sum_probs=204.7
Q ss_pred HHHHHHHHHHhcc-CCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYV-DPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLT 108 (324)
Q Consensus 31 ~~A~~~~~~~l~~-~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 108 (324)
++++.-+...... .|. ..-+-...|.+.+.+.|+++|+..|+.++ .||-...-.....+++...++-.+---.-+
T Consensus 244 ~e~~~k~e~l~~~gf~~---~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~ 320 (559)
T KOG1155|consen 244 EEALQKKERLSSVGFPN---SMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQ 320 (559)
T ss_pred HHHHHHHHHHHhccCCc---cHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHH
Confidence 7777777777665 443 44466788899999999999999999999 999888888878887777665433333333
Q ss_pred HHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHH
Q psy8160 109 LCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIH 188 (324)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~ 188 (324)
.+...+.-.+ +...-+|..|...++.++|+.+|+++++++ |+... +|..+|.=|.. +.+...|+.
T Consensus 321 ~v~~idKyR~----ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~~~~--aWTLmGHEyvE-------mKNt~AAi~ 385 (559)
T KOG1155|consen 321 NVSNIDKYRP----ETCCIIANYYSLRSEHEKAVMYFKRALKLN--PKYLS--AWTLMGHEYVE-------MKNTHAAIE 385 (559)
T ss_pred HHHHhccCCc----cceeeehhHHHHHHhHHHHHHHHHHHHhcC--cchhH--HHHHhhHHHHH-------hcccHHHHH
Confidence 3444433333 667888999999999999999999999999 88844 99999999977 348889999
Q ss_pred HHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH---------
Q psy8160 189 CLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL--------- 259 (324)
Q Consensus 189 ~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~--------- 259 (324)
.|++|++++|.+..+|+.||++|.-++.+.=|+-+|++|..+.|.++..|..||.||.+.++ .++|+++|
T Consensus 386 sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~-~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 386 SYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNR-LEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhcc-HHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred --HHHHhhHHHHHHcCCCCcchHHHHHHHhhhc
Q psy8160 260 --NKYRDLGDFLVINNIPTSNNNRQCYNSYSTS 290 (324)
Q Consensus 260 --~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~ 290 (324)
.++..||.+|.+.++.++ |..+|++.++.
T Consensus 465 e~~~l~~LakLye~l~d~~e--Aa~~yek~v~~ 495 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNE--AAQYYEKYVEV 495 (559)
T ss_pred chHHHHHHHHHHHHHHhHHH--HHHHHHHHHHH
Confidence 789999999999999999 99999999984
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.93 E-value=1.1e-23 Score=185.52 Aligned_cols=253 Identities=14% Similarity=0.072 Sum_probs=219.0
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHL 131 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~ 131 (324)
..+.+|..+...|++++|+..|++++ .+|++..++..+|.++...|++++|+..+++++...+........++..+|.+
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 56778999999999999999999999 99999999999999999999999999999999875332222334678899999
Q ss_pred HHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH-----HHHHH
Q psy8160 132 HEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG-----QSLYL 206 (324)
Q Consensus 132 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~ 206 (324)
+...|++++|+..|++++... |.. ..++..++.++.. .+++++|+..++++++..|.+. ..+..
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~--~~~--~~~~~~la~~~~~-------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEG--DFA--EGALQQLLEIYQQ-------EKDWQKAIDVAERLEKLGGDSLRVEIAHFYCE 185 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCC--cch--HHHHHHHHHHHHH-------hchHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 999999999999999999877 665 4488889988866 4599999999999999887653 35678
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH------------HHHHhhHHHHHHcCC
Q psy8160 207 LGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL------------NKYRDLGDFLVINNI 274 (324)
Q Consensus 207 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~------------~~~~~lg~~~~~~~~ 274 (324)
+|.++...|++++|+..|+++++.+|++..++..+|.++...|+ +++|++.| .++..++.+|...|+
T Consensus 186 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 186 LAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGD-YAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999 99999998 346788999999999
Q ss_pred CCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 275 PTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 275 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
+++ |+..++++++..|+.+.. ..+..+ ....+++++|+..+++
T Consensus 265 ~~~--A~~~l~~~~~~~p~~~~~-~~la~~-~~~~g~~~~A~~~l~~ 307 (389)
T PRK11788 265 EAE--GLEFLRRALEEYPGADLL-LALAQL-LEEQEGPEAAQALLRE 307 (389)
T ss_pred HHH--HHHHHHHHHHhCCCchHH-HHHHHH-HHHhCCHHHHHHHHHH
Confidence 999 999999999999987654 444433 3456888899888765
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=1.7e-23 Score=198.61 Aligned_cols=267 Identities=12% Similarity=0.025 Sum_probs=223.0
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
..+...+.+++...|.. ....+++.+|.|+.. +++++|+..+.+++ ..|++. ....+|.++...|++++|+..|++
T Consensus 458 ~~~~~~~~~al~~~p~~-~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rk 534 (987)
T PRK09782 458 ADNCPAIVRLLGDMSPS-YDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQK 534 (987)
T ss_pred hhhHHHHHHhcccCCCC-CCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44556666666655531 156789999999987 89999999999999 888753 455678888899999999999999
Q ss_pred HHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHH
Q psy8160 110 CLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHC 189 (324)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~ 189 (324)
++...|.. ..++.+|.++...|++++|+.+|++++..+ |.... ....++..... .|++++|+..
T Consensus 535 a~~~~p~~-----~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~--l~~~La~~l~~-------~Gr~~eAl~~ 598 (987)
T PRK09782 535 ISLHDMSN-----EDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNA--LYWWLHAQRYI-------PGQPELALND 598 (987)
T ss_pred HhccCCCc-----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHH--HHHHHHHHHHh-------CCCHHHHHHH
Confidence 87654432 457888999999999999999999999988 76632 44444333322 3599999999
Q ss_pred HHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH----------
Q psy8160 190 LQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL---------- 259 (324)
Q Consensus 190 ~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~---------- 259 (324)
++++++.+|+ +.++..+|.++...|++++|+..|++++.++|+++.++.++|.++...|+ +++|+..|
T Consensus 599 ~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~-~eeAi~~l~~AL~l~P~~ 676 (987)
T PRK09782 599 LTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGD-IAQSREMLERAHKGLPDD 676 (987)
T ss_pred HHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCC
Confidence 9999999996 99999999999999999999999999999999999999999999999999 99999999
Q ss_pred -HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 260 -NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 260 -~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
.++.++|.++...|++++ |+.+|+++++++|++..+....+.+. ..+.+|..+.+.+..
T Consensus 677 ~~a~~nLA~al~~lGd~~e--A~~~l~~Al~l~P~~a~i~~~~g~~~-~~~~~~~~a~~~~~r 736 (987)
T PRK09782 677 PALIRQLAYVNQRLDDMAA--TQHYARLVIDDIDNQALITPLTPEQN-QQRFNFRRLHEEVGR 736 (987)
T ss_pred HHHHHHHHHHHHHCCCHHH--HHHHHHHHHhcCCCCchhhhhhhHHH-HHHHHHHHHHHHHHH
Confidence 889999999999999999 99999999999999998888776654 345668888877653
No 16
>KOG1126|consensus
Probab=99.93 E-value=2.3e-24 Score=187.23 Aligned_cols=226 Identities=17% Similarity=0.200 Sum_probs=206.6
Q ss_pred cchhhhHhHHHHH--HHHHHHHHHHhccCCCccc-------------------------------chHHHHHHHHHHHHh
Q psy8160 18 RVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLR-------------------------------ANEVHLRLGLMFKVN 64 (324)
Q Consensus 18 ~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~-------------------------------~~~~~~~lg~~~~~~ 64 (324)
+...+|..++.+. ++|..+|+.+-++.|-.-+ .++.|..+|.||..+
T Consensus 355 vl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQ 434 (638)
T KOG1126|consen 355 VLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQ 434 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhh
Confidence 4455777666666 8999999998888774322 345688899999999
Q ss_pred ccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHH
Q psy8160 65 NEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKD 143 (324)
Q Consensus 65 ~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 143 (324)
++.+.|+++|++|+ +||.+..++.++|+=+..+.+++.|..+|++++..+|..- .+|+.+|.+|..+++++.|.-
T Consensus 435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY----nAwYGlG~vy~Kqek~e~Ae~ 510 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY----NAWYGLGTVYLKQEKLEFAEF 510 (638)
T ss_pred hHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh----HHHHhhhhheeccchhhHHHH
Confidence 99999999999999 9999999999999999999999999999999999888876 899999999999999999999
Q ss_pred HHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHH
Q psy8160 144 SYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLA 223 (324)
Q Consensus 144 ~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 223 (324)
.|++|+.++ |.+.. +...+|.++.+ .++.++|+.++++|+.++|.++-..+..|.+++..+++++|+..
T Consensus 511 ~fqkA~~IN--P~nsv--i~~~~g~~~~~-------~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~ 579 (638)
T KOG1126|consen 511 HFQKAVEIN--PSNSV--ILCHIGRIQHQ-------LKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQE 579 (638)
T ss_pred HHHhhhcCC--ccchh--HHhhhhHHHHH-------hhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHH
Confidence 999999999 88844 88899999977 55999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 224 YRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 224 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
+++..++-|++..+++.+|.+|.+.|+ .+.|+..|
T Consensus 580 LEeLk~~vP~es~v~~llgki~k~~~~-~~~Al~~f 614 (638)
T KOG1126|consen 580 LEELKELVPQESSVFALLGKIYKRLGN-TDLALLHF 614 (638)
T ss_pred HHHHHHhCcchHHHHHHHHHHHHHHcc-chHHHHhh
Confidence 999999999999999999999999999 99998887
No 17
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=9.4e-23 Score=193.55 Aligned_cols=262 Identities=10% Similarity=-0.030 Sum_probs=226.7
Q ss_pred ccccchhhhHhHHHHH-HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHH
Q psy8160 15 TSVRVPKLQQFGKTLN-IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGL 92 (324)
Q Consensus 15 ~~~~~~~l~~~~~~~~-~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~ 92 (324)
++..+..+|.+..... .+|+..|.+++...|+. ..+..+|..+...|++++|+.+|++++ ..|. ...+..+|.
T Consensus 476 ~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~----~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDA----WQHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCch----HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHH
Confidence 4555566666544422 78999999999999863 246777888889999999999999988 5444 455678899
Q ss_pred HHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHh
Q psy8160 93 MFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHC 172 (324)
Q Consensus 93 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~ 172 (324)
++...|++++|+.++++++...|... .....++......|++++|+..|++++..+ |+ +.++..+|.++..
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~P~~~----~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~---~~a~~~LA~~l~~ 621 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRGLGDN----ALYWWLHAQRYIPGQPELALNDLTRSLNIA--PS---ANAYVARATIYRQ 621 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCccH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CC---HHHHHHHHHHHHH
Confidence 99999999999999999998876654 555566666667799999999999999999 85 4589999999977
Q ss_pred hhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCH
Q psy8160 173 IDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNR 252 (324)
Q Consensus 173 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~ 252 (324)
.|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++.++|.++...|+ +
T Consensus 622 -------lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd-~ 693 (987)
T PRK09782 622 -------RHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDD-M 693 (987)
T ss_pred -------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-H
Confidence 55999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred HHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhch
Q psy8160 253 EDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNK 301 (324)
Q Consensus 253 ~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 301 (324)
++|+.+| .+....|.+.....++.. |.+.|.++...+|... +....
T Consensus 694 ~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~--a~~~~~r~~~~~~~~~-a~~~~ 750 (987)
T PRK09782 694 AATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRR--LHEEVGRRWTFSFDSS-IGLRS 750 (987)
T ss_pred HHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHH--HHHHHHHHhhcCccch-hcccc
Confidence 9999999 778889999999999999 9999999999999876 44333
No 18
>KOG1155|consensus
Probab=99.91 E-value=6.1e-22 Score=165.33 Aligned_cols=248 Identities=14% Similarity=0.170 Sum_probs=208.3
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHH-Hh-cCCCCchhhHHHHHHHHhcccHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTL-CL-IDASPCTFTKLEGLMFKVNNEYDSALKHLT 108 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~-al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 108 (324)
++|++.|+.+.+.+|-.-.+-+.+.+ ..|. .++ ...+.++-. +. +|.-.+...-..|+.|...++.+.|+.+|+
T Consensus 279 D~a~s~Feei~knDPYRl~dmdlySN--~LYv-~~~-~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFk 354 (559)
T KOG1155|consen 279 DQAESVFEEIRKNDPYRLDDMDLYSN--VLYV-KND-KSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFK 354 (559)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHhH--HHHH-Hhh-hHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHH
Confidence 99999999999999854333333333 2333 332 223333333 33 676666666778999999999999999999
Q ss_pred HHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHH
Q psy8160 109 LCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIH 188 (324)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~ 188 (324)
++++.+|... .+|..+|+-|..+++...|++.|++|++++ |.+.. +|+++|..|-- ++.+.=|+-
T Consensus 355 RALkLNp~~~----~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~--p~DyR--AWYGLGQaYei-------m~Mh~YaLy 419 (559)
T KOG1155|consen 355 RALKLNPKYL----SAWTLMGHEYVEMKNTHAAIESYRRAVDIN--PRDYR--AWYGLGQAYEI-------MKMHFYALY 419 (559)
T ss_pred HHHhcCcchh----HHHHHhhHHHHHhcccHHHHHHHHHHHhcC--chhHH--HHhhhhHHHHH-------hcchHHHHH
Confidence 9999999887 899999999999999999999999999999 98866 99999999955 337778999
Q ss_pred HHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH---------
Q psy8160 189 CLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL--------- 259 (324)
Q Consensus 189 ~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~--------- 259 (324)
+|++|+...|+++..|..||.||...++.++|+++|.+|+.....+..++..||.+|.+.++ .++|..+|
T Consensus 420 YfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d-~~eAa~~yek~v~~~~~ 498 (559)
T KOG1155|consen 420 YFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD-LNEAAQYYEKYVEVSEL 498 (559)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999998
Q ss_pred ---------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhc
Q psy8160 260 ---------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNN 300 (324)
Q Consensus 260 ---------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 300 (324)
.+-.-|+.-+.+.+++++ |-.+...++..+|.....+.-
T Consensus 499 eg~~~~~t~ka~~fLA~~f~k~~~~~~--As~Ya~~~~~~~~e~eeak~L 546 (559)
T KOG1155|consen 499 EGEIDDETIKARLFLAEYFKKMKDFDE--ASYYATLVLKGETECEEAKAL 546 (559)
T ss_pred hcccchHHHHHHHHHHHHHHhhcchHH--HHHHHHHHhcCCchHHHHHHH
Confidence 233448888889999999 999999999887765555443
No 19
>KOG0547|consensus
Probab=99.91 E-value=4.3e-22 Score=167.25 Aligned_cols=274 Identities=14% Similarity=0.147 Sum_probs=221.3
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
++|+.+|.+++++.|+- +-.|.+++-||...|+|++-++...+++ ++|+...+....+..+...|++++|+....-
T Consensus 132 ~eAIkyY~~AI~l~p~e---piFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv 208 (606)
T KOG0547|consen 132 DEAIKYYTQAIELCPDE---PIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTV 208 (606)
T ss_pred HHHHHHHHHHHhcCCCC---chhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhH
Confidence 99999999999999973 3367889999999999999999999999 9999999999988888888888888654332
Q ss_pred H------------------HH-------------hcCCCcc---------------------------------------
Q psy8160 110 C------------------LI-------------DASPCTF--------------------------------------- 119 (324)
Q Consensus 110 ~------------------l~-------------~~~~~~~--------------------------------------- 119 (324)
. |. ..++..+
T Consensus 209 ~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~ 288 (606)
T KOG0547|consen 209 LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALE 288 (606)
T ss_pred HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHH
Confidence 1 10 0000000
Q ss_pred --------------------------cH---------HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHH
Q psy8160 120 --------------------------TK---------LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICR 164 (324)
Q Consensus 120 --------------------------~~---------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 164 (324)
.+ +.++...|..++..|++..|...|+.+|.++ |.... .+.
T Consensus 289 ~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~--~~~~~--lyI 364 (606)
T KOG0547|consen 289 KGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD--PAFNS--LYI 364 (606)
T ss_pred hhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC--cccch--HHH
Confidence 00 1145555777778889999999999999998 55433 688
Q ss_pred HHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHH
Q psy8160 165 QLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNK 244 (324)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 244 (324)
.++.+|.. ..+.++....|.++..++|.++++|+..|++++-.+++++|+.-|++++.++|++.-++..++.+
T Consensus 365 ~~a~~y~d-------~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a 437 (606)
T KOG0547|consen 365 KRAAAYAD-------ENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCA 437 (606)
T ss_pred HHHHHHhh-------hhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHH
Confidence 88888866 34788899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCC------hhhhhhchhhhccC
Q psy8160 245 DFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIAS------CKHINNNKDFSNNS 307 (324)
Q Consensus 245 ~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~ 307 (324)
.+++++ ++++...| +++...|.++..++++++ |++.|.+|+++.|. ++.-.-+.+.+-..
T Consensus 438 ~Yr~~k-~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~--A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q 514 (606)
T KOG0547|consen 438 LYRQHK-IAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDK--AVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ 514 (606)
T ss_pred HHHHHH-HHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHH--HHHHHHHHHhhccccccccccchhhhhhhHhhhc
Confidence 999999 99988888 899999999999999999 99999999999998 33222222222234
Q ss_pred ChhhHHHHHHHHhh
Q psy8160 308 NREDYHQALNKYRD 321 (324)
Q Consensus 308 ~~~~~~~a~~~~~~ 321 (324)
.++++.+|++-.++
T Consensus 515 wk~d~~~a~~Ll~K 528 (606)
T KOG0547|consen 515 WKEDINQAENLLRK 528 (606)
T ss_pred hhhhHHHHHHHHHH
Confidence 66777777765543
No 20
>KOG2002|consensus
Probab=99.90 E-value=2.8e-21 Score=174.13 Aligned_cols=286 Identities=15% Similarity=0.160 Sum_probs=194.6
Q ss_pred ccchhhhHhHHHHH----HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHH--
Q psy8160 17 VRVPKLQQFGKTLN----IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKL-- 89 (324)
Q Consensus 17 ~~~~~l~~~~~~~~----~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~-- 89 (324)
.+...+|+..+.++ ..|+.+|.+++.++|..+ ++....+|.|+..+++.+.|+..|.+++ +||.++.+...
T Consensus 163 Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~--aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~ 240 (1018)
T KOG2002|consen 163 NILALLGKARIAYNKKDYRGALKYYKKALRINPACK--ADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALG 240 (1018)
T ss_pred chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC--CCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHH
Confidence 34556778777777 888888888888888754 3467888888888888888888888888 87776665554
Q ss_pred -----------------------------------HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Q psy8160 90 -----------------------------------EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEV 134 (324)
Q Consensus 90 -----------------------------------la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~ 134 (324)
++..|...|+|..+......++... .+....++.+|++|.+|..
T Consensus 241 ~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t-~~~~~~aes~Y~~gRs~Ha 319 (1018)
T KOG2002|consen 241 EVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT-ENKSIKAESFYQLGRSYHA 319 (1018)
T ss_pred HHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHh
Confidence 4555555566666666666655433 2233445667777777777
Q ss_pred hhcHHHHHHHHHHHHhcCCCCCc-hhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHH
Q psy8160 135 QRKYKTAKDSYEQLLKEDDLPVH-LKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAA 213 (324)
Q Consensus 135 ~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 213 (324)
+|+|++|..+|.+++..+ |++ +. .++++|.++.. .++++.|+.+|++.+...|++.++...||.+|..
T Consensus 320 ~Gd~ekA~~yY~~s~k~~--~d~~~l--~~~GlgQm~i~-------~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~ 388 (1018)
T KOG2002|consen 320 QGDFEKAFKYYMESLKAD--NDNFVL--PLVGLGQMYIK-------RGDLEESKFCFEKVLKQLPNNYETMKILGCLYAH 388 (1018)
T ss_pred hccHHHHHHHHHHHHccC--CCCccc--cccchhHHHHH-------hchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHh
Confidence 777777777777777776 554 33 66777777755 4477777777777777777777777777777776
Q ss_pred cC----CHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH----------------HHHHhhHHHHHHcC
Q psy8160 214 VG----KVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL----------------NKYRDLGDFLVINN 273 (324)
Q Consensus 214 ~~----~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~----------------~~~~~lg~~~~~~~ 273 (324)
.+ .-+.|.....+++...|.+.++|..++.++..... +.. +..| +++.++|..+...|
T Consensus 389 ~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~-~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g 466 (1018)
T KOG2002|consen 389 SAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDP-WAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLG 466 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcCh-HHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhc
Confidence 64 45667777777777777777777777777766655 443 4444 67778888888888
Q ss_pred CCCcchHHHHHHHhhhc-----CCCh---h--hhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 274 IPTSNNNRQCYNSYSTS-----IASC---K--HINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 274 ~~~~~~A~~~~~~al~~-----~p~~---~--~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
++.. |...|..|+.. +++. + ....|++.+ .....++..|-+.|++
T Consensus 467 ~~~~--A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl-~E~l~~~~~A~e~Yk~ 521 (1018)
T KOG2002|consen 467 NIEK--ALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL-LEELHDTEVAEEMYKS 521 (1018)
T ss_pred ChHH--HHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH-HHhhhhhhHHHHHHHH
Confidence 8888 88888887765 1211 1 124444433 2334556666565554
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.90 E-value=7.2e-21 Score=179.90 Aligned_cols=175 Identities=12% Similarity=0.072 Sum_probs=133.8
Q ss_pred HHhhcHHHHHHHHHHHHhcCC-CCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc----HHHHHHH
Q psy8160 133 EVQRKYKTAKDSYEQLLKEDD-LPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS----GQSLYLL 207 (324)
Q Consensus 133 ~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~l 207 (324)
...|++++|+..|++++...+ .|.. +...+|.++.. .+++++|+..|++++..+|.+ ......+
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~----a~~~la~~yl~-------~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L 316 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPW----AQRWVASAYLK-------LHQPEKAQSILTELFYHPETIADLSDEELADL 316 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHH----HHHHHHHHHHh-------cCCcHHHHHHHHHHhhcCCCCCCCChHHHHHH
Confidence 455777788888887776641 1222 33334666655 458888999999988877765 3556777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCC---------------HHHHHHhHHHHhhcCCCHHHHHHHH-----------HH
Q psy8160 208 GRCFAAVGKVHDAFLAYRNSVEKSEGN---------------ADTWCSIGNKDFSNNSNREDYHQAL-----------NK 261 (324)
Q Consensus 208 g~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~ 261 (324)
+.++...|++++|+..++++....|.. ..++..+|.++...|+ +++|+..+ .+
T Consensus 317 ~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~-~~eA~~~l~~al~~~P~n~~l 395 (765)
T PRK10049 317 FYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSND-LPQAEMRARELAYNAPGNQGL 395 (765)
T ss_pred HHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHH
Confidence 778888899999999999888877631 3466788889999999 99999888 78
Q ss_pred HHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhhc
Q psy8160 262 YRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRDL 322 (324)
Q Consensus 262 ~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 322 (324)
+..+|.++...|++++ |++.++++++++|+++.+...++.. ....+++.+|...++++
T Consensus 396 ~~~lA~l~~~~g~~~~--A~~~l~~al~l~Pd~~~l~~~~a~~-al~~~~~~~A~~~~~~l 453 (765)
T PRK10049 396 RIDYASVLQARGWPRA--AENELKKAEVLEPRNINLEVEQAWT-ALDLQEWRQMDVLTDDV 453 (765)
T ss_pred HHHHHHHHHhcCCHHH--HHHHHHHHHhhCCCChHHHHHHHHH-HHHhCCHHHHHHHHHHH
Confidence 8899999999999999 9999999999999998877777654 35667888888887764
No 22
>KOG0547|consensus
Probab=99.90 E-value=4.6e-21 Score=161.11 Aligned_cols=292 Identities=12% Similarity=0.108 Sum_probs=239.6
Q ss_pred HhhhhccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhc------
Q psy8160 8 NLVEGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLI------ 79 (324)
Q Consensus 8 ~~~~~~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~------ 79 (324)
.|...+..|..+.+..-.+..++ ++.++...++|+++|++. .++++.+..+-.+|++.+|+....-..+
T Consensus 141 AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~---KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n 217 (606)
T KOG0547|consen 141 AIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYV---KALLRRASAHEQLGKFDEALFDVTVLCILEGFQN 217 (606)
T ss_pred HHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHH---HHHHHHHHHHHhhccHHHHHHhhhHHHHhhhccc
Confidence 45555556777777777666666 999999999999999864 4789999999999999988875443221
Q ss_pred -----------------------------------------------------CCCC-----------------------
Q psy8160 80 -----------------------------------------------------DASP----------------------- 83 (324)
Q Consensus 80 -----------------------------------------------------~~~~----------------------- 83 (324)
++.+
T Consensus 218 ~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~ 297 (606)
T KOG0547|consen 218 ASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLK 297 (606)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHH
Confidence 0000
Q ss_pred ----------------------------chhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHh
Q psy8160 84 ----------------------------CTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQ 135 (324)
Q Consensus 84 ----------------------------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~ 135 (324)
..+....|..+...|++..|.+.++.++...|... ..+..+|.+|...
T Consensus 298 a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~----~lyI~~a~~y~d~ 373 (606)
T KOG0547|consen 298 AYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN----SLYIKRAAAYADE 373 (606)
T ss_pred HHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc----hHHHHHHHHHhhh
Confidence 01111135555566899999999999998888776 5688999999999
Q ss_pred hcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcC
Q psy8160 136 RKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVG 215 (324)
Q Consensus 136 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 215 (324)
.+.++....|.++..++ |.+ ++++++.|.+++- .+++++|+..|+++++++|.+.-++.+++....+++
T Consensus 374 ~~~~~~~~~F~~A~~ld--p~n--~dvYyHRgQm~fl-------L~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~ 442 (606)
T KOG0547|consen 374 NQSEKMWKDFNKAEDLD--PEN--PDVYYHRGQMRFL-------LQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQH 442 (606)
T ss_pred hccHHHHHHHHHHHhcC--CCC--CchhHhHHHHHHH-------HHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHH
Confidence 99999999999999999 887 5599999999977 559999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------------HHHHhhHHHH-HHcCCCCc
Q psy8160 216 KVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-----------------NKYRDLGDFL-VINNIPTS 277 (324)
Q Consensus 216 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------------~~~~~lg~~~-~~~~~~~~ 277 (324)
+++++...|+.+....|+.++.+...|.++..+++ +++|++.| ..+..-|.+. .=.+++..
T Consensus 443 k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqq-Fd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~ 521 (606)
T KOG0547|consen 443 KIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQ-FDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQ 521 (606)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHh-HHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHH
Confidence 99999999999999999999999999999999999 99999999 1122222221 12268889
Q ss_pred chHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 278 NNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 278 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
|+..+++|+++||.+..+...++... .++++.++|++-|.+
T Consensus 522 --a~~Ll~KA~e~Dpkce~A~~tlaq~~-lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 522 --AENLLRKAIELDPKCEQAYETLAQFE-LQRGKIDEAIELFEK 562 (606)
T ss_pred --HHHHHHHHHccCchHHHHHHHHHHHH-HHHhhHHHHHHHHHH
Confidence 99999999999999999999998876 478999999998865
No 23
>KOG1129|consensus
Probab=99.90 E-value=8.1e-22 Score=158.05 Aligned_cols=234 Identities=15% Similarity=0.208 Sum_probs=207.4
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Q psy8160 54 HLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHE 133 (324)
Q Consensus 54 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~ 133 (324)
-..+|.||...|-+.+|.+.|+.++...........++.+|....+...|+..+...++..|.+. ..+..++.++.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~V----T~l~g~ARi~e 301 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDV----TYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchh----hhhhhhHHHHH
Confidence 35799999999999999999999995445566777899999999999999999999998888775 67888899999
Q ss_pred HhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHH
Q psy8160 134 VQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAA 213 (324)
Q Consensus 134 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 213 (324)
.++++++|+++|+.+++.. |.++++-+....+..| -++.+-|+.+|++.+++.-.+++.++++|.|++.
T Consensus 302 am~~~~~a~~lYk~vlk~~--~~nvEaiAcia~~yfY---------~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y 370 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH--PINVEAIACIAVGYFY---------DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY 370 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC--Cccceeeeeeeecccc---------CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh
Confidence 9999999999999999999 8887765666666666 3389999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHccCCC---CHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcch
Q psy8160 214 VGKVHDAFLAYRNSVEKSEG---NADTWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNN 279 (324)
Q Consensus 214 ~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~ 279 (324)
.++++-++..|++|+....+ -++.|+++|.+....|+ +.-|..+| +++.+||.+-.+.|+.++
T Consensus 371 aqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD-~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~-- 447 (478)
T KOG1129|consen 371 AQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD-FNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILG-- 447 (478)
T ss_pred hcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc-hHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHH--
Confidence 99999999999999986543 37899999999999999 99999999 899999999999999999
Q ss_pred HHHHHHHhhhcCCChhhhhhchhhhc
Q psy8160 280 NRQCYNSYSTSIASCKHINNNKDFSN 305 (324)
Q Consensus 280 A~~~~~~al~~~p~~~~~~~~l~~~~ 305 (324)
|...+..|-...|.......|+.++.
T Consensus 448 Arsll~~A~s~~P~m~E~~~Nl~~~s 473 (478)
T KOG1129|consen 448 ARSLLNAAKSVMPDMAEVTTNLQFMS 473 (478)
T ss_pred HHHHHHHhhhhCccccccccceeEEe
Confidence 99999999999999888888887754
No 24
>KOG2076|consensus
Probab=99.90 E-value=1.5e-20 Score=168.40 Aligned_cols=291 Identities=12% Similarity=0.122 Sum_probs=231.7
Q ss_pred hhccccccchhhhHhHHHHH----HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCch
Q psy8160 11 EGIVTSVRVPKLQQFGKTLN----IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCT 85 (324)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~~----~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~ 85 (324)
.++++|++...||.++.++- ++|.+.+..+++.+|. +..+|+.||.+|..+|+.++|+..+-.|- ++|++..
T Consensus 132 ~~~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~---~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e 208 (895)
T KOG2076|consen 132 KSKLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPR---NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYE 208 (895)
T ss_pred ccccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcc---chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChH
Confidence 34667777777888776666 9999999999999986 55689999999999999999999999999 9999999
Q ss_pred hhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCC-chh--hHH
Q psy8160 86 FTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPV-HLK--ADI 162 (324)
Q Consensus 86 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~--~~~ 162 (324)
.|..++.....+|.+++|.-+|.+++..+|+.. ...+..+.++..+|+...|.+.|.+++... |+ +.+ -..
T Consensus 209 ~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~----~~~~ers~L~~~~G~~~~Am~~f~~l~~~~--p~~d~er~~d~ 282 (895)
T KOG2076|consen 209 LWKRLADLSEQLGNINQARYCYSRAIQANPSNW----ELIYERSSLYQKTGDLKRAMETFLQLLQLD--PPVDIERIEDL 282 (895)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCcch----HHHHHHHHHHHHhChHHHHHHHHHHHHhhC--CchhHHHHHHH
Confidence 999999999999999999999999999999987 788889999999999999999999999998 52 211 122
Q ss_pred HHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-----------
Q psy8160 163 CRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA--DPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVE----------- 229 (324)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~----------- 229 (324)
....+..+.. .++.+.|++.++.++.. +....+.+..++.++.....++.|......-..
T Consensus 283 i~~~~~~~~~-------~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~ 355 (895)
T KOG2076|consen 283 IRRVAHYFIT-------HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWD 355 (895)
T ss_pred HHHHHHHHHH-------hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhh
Confidence 2333444433 22447778888777762 222224444555566666555555554433322
Q ss_pred ----------------------------------------------------cCC-CCHHHHHHhHHHHhhcCCCHHHHH
Q psy8160 230 ----------------------------------------------------KSE-GNADTWCSIGNKDFSNNSNREDYH 256 (324)
Q Consensus 230 ----------------------------------------------------~~p-~~~~~~~~lg~~~~~~~~~~~~A~ 256 (324)
..| ++++.++.++.++...|+ +.+|+
T Consensus 356 ~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~-~~~Al 434 (895)
T KOG2076|consen 356 TDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGK-YKEAL 434 (895)
T ss_pred hhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhccc-HHHHH
Confidence 011 236778899999999999 99999
Q ss_pred HHH------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 257 QAL------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 257 ~~~------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
..| .+|+.+|.||...|.+++ |+.+|++++.+.|++..++-.|..+. ...|+.++|++....
T Consensus 435 ~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~--A~e~y~kvl~~~p~~~D~Ri~Lasl~-~~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 435 RLLSPITNREGYQNAFVWYKLARCYMELGEYEE--AIEFYEKVLILAPDNLDARITLASLY-QQLGNHEKALETLEQ 508 (895)
T ss_pred HHHHHHhcCccccchhhhHHHHHHHHHHhhHHH--HHHHHHHHHhcCCCchhhhhhHHHHH-HhcCCHHHHHHHHhc
Confidence 999 699999999999999999 99999999999999999999988764 456888899887654
No 25
>KOG2002|consensus
Probab=99.89 E-value=7.4e-22 Score=177.82 Aligned_cols=283 Identities=16% Similarity=0.100 Sum_probs=225.7
Q ss_pred cccccchhhhHhHHHHH--HHHHHHHHHHhcc-----CCCcc--cchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCC
Q psy8160 14 VTSVRVPKLQQFGKTLN--IKAIKTFQQLLYV-----DPSYL--RANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASP 83 (324)
Q Consensus 14 ~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~-----~p~~~--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~ 83 (324)
+-|++..++|-+++.++ ++|...|.+++.. +++-. .+....|++|.+.-..++++.|.+.|..++ ..|+.
T Consensus 450 ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~Y 529 (1018)
T KOG2002|consen 450 IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGY 529 (1018)
T ss_pred CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchh
Confidence 55666666776666666 7777777777766 12211 112246777888888888888888888877 77888
Q ss_pred chhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHH
Q psy8160 84 CTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADIC 163 (324)
Q Consensus 84 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 163 (324)
...+..+|-+....+...+|...+..++..+..++ +++..+|.+|....++..|..-|+.+++..... ..+.+.
T Consensus 530 Id~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np----~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~--~D~Ysl 603 (1018)
T KOG2002|consen 530 IDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNP----NARSLLGNLHLKKSEWKPAKKKFETILKKTSTK--TDAYSL 603 (1018)
T ss_pred HHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCc----HHHHHHHHHHHhhhhhcccccHHHHHHhhhccC--CchhHH
Confidence 88877777666677777888888887777666665 778888888888888888888777777654222 225577
Q ss_pred HHHHHHHHhhhhhc-----ccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q psy8160 164 RQLGWMYHCIDTLG-----EKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTW 238 (324)
Q Consensus 164 ~~l~~~~~~~~~~~-----~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 238 (324)
..||.++++.-... ...+.+++|+..|.+++..+|.|..+-..+|.|+...|++.+|+..|.++.+.-.+++++|
T Consensus 604 iaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~ 683 (1018)
T KOG2002|consen 604 IALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVW 683 (1018)
T ss_pred HHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCcee
Confidence 78888775422111 1345789999999999999999999999999999999999999999999999888899999
Q ss_pred HHhHHHHhhcCCCHHHHHHHH-------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhc
Q psy8160 239 CSIGNKDFSNNSNREDYHQAL-------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSN 305 (324)
Q Consensus 239 ~~lg~~~~~~~~~~~~A~~~~-------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 305 (324)
.++|.||..+|+ |..|++.| ++...||.++...|.+.+ |.+...+|+...|.++.+..|++++.
T Consensus 684 lNlah~~~e~~q-y~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~e--ak~~ll~a~~~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 684 LNLAHCYVEQGQ-YRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQE--AKEALLKARHLAPSNTSVKFNLALVL 760 (1018)
T ss_pred eeHHHHHHHHHH-HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHH--HHHHHHHHHHhCCccchHHhHHHHHH
Confidence 999999999999 99999999 888999999999999999 99999999999999999999988653
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=2.4e-20 Score=176.36 Aligned_cols=272 Identities=11% Similarity=0.011 Sum_probs=195.4
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
++|++.|+++++++|+. ..++..+|.++...|++++|+..+++++ .+|.+.. +..+|.++...|++++|+..+++
T Consensus 66 ~~A~~~~~~al~~~P~~---~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~ 141 (765)
T PRK10049 66 QNSLTLWQKALSLEPQN---DDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQ 141 (765)
T ss_pred HHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777777777777653 4456777777777777777777777777 7777777 77777777777777777777777
Q ss_pred HHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHh---------------------------------------
Q psy8160 110 CLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLK--------------------------------------- 150 (324)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--------------------------------------- 150 (324)
++...|... +++..+|.++...+..++|+..++++..
T Consensus 142 al~~~P~~~----~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~ 217 (765)
T PRK10049 142 ALPRAPQTQ----QYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALA 217 (765)
T ss_pred HHHhCCCCH----HHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHH
Confidence 777777665 6666777777777776666655553222
Q ss_pred -------cC-CCCCchh--hHHHH-HHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH-HHHHHHHHHHHHcCCHH
Q psy8160 151 -------ED-DLPVHLK--ADICR-QLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG-QSLYLLGRCFAAVGKVH 218 (324)
Q Consensus 151 -------~~-~~~~~~~--~~~~~-~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~lg~~~~~~~~~~ 218 (324)
.. ..|.... ..+.. .++.++ . .+++++|+..|+++++..|..| .+...+|.++...|+++
T Consensus 218 ~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll-~-------~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e 289 (765)
T PRK10049 218 QYDALEALWHDNPDATADYQRARIDRLGALL-A-------RDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPE 289 (765)
T ss_pred HHHHHHhhcccCCccchHHHHHHHHHHHHHH-H-------hhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcH
Confidence 00 0010000 00000 011111 1 3478899999999888764333 23344688999999999
Q ss_pred HHHHHHHHHHccCCCC----HHHHHHhHHHHhhcCCCHHHHHHHH--------------------------HHHHhhHHH
Q psy8160 219 DAFLAYRNSVEKSEGN----ADTWCSIGNKDFSNNSNREDYHQAL--------------------------NKYRDLGDF 268 (324)
Q Consensus 219 ~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~~A~~~~--------------------------~~~~~lg~~ 268 (324)
+|+..|++++..+|.+ ......++.++...|+ +++|+..+ .++..+|.+
T Consensus 290 ~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~-~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~ 368 (765)
T PRK10049 290 KAQSILTELFYHPETIADLSDEELADLFYSLLESEN-YPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQV 368 (765)
T ss_pred HHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhccc-HHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHH
Confidence 9999999999888876 3567778888899999 99999887 134678889
Q ss_pred HHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhhc
Q psy8160 269 LVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRDL 322 (324)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 322 (324)
+...|++++ |++.+++++...|+++.++..++.+. ..++++.+|+..++..
T Consensus 369 l~~~g~~~e--A~~~l~~al~~~P~n~~l~~~lA~l~-~~~g~~~~A~~~l~~a 419 (765)
T PRK10049 369 AKYSNDLPQ--AEMRARELAYNAPGNQGLRIDYASVL-QARGWPRAAENELKKA 419 (765)
T ss_pred HHHcCCHHH--HHHHHHHHHHhCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHH
Confidence 999999999 99999999999999999998888764 4678899999888753
No 27
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.89 E-value=3.8e-23 Score=173.57 Aligned_cols=247 Identities=15% Similarity=0.084 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHh--c-CCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q psy8160 54 HLRLGLMFKVNNEYDSALKHLTLCL--I-DASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH 130 (324)
Q Consensus 54 ~~~lg~~~~~~~~~~~A~~~~~~al--~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~ 130 (324)
.+.+|.+++..|++++|++.+++.+ . +|++..++..+|.+....++++.|+..|++++...+... ..+..++.
T Consensus 11 ~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~----~~~~~l~~ 86 (280)
T PF13429_consen 11 ALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANP----QDYERLIQ 86 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----cccccccc
Confidence 4578999999999999999997665 4 589999999999999999999999999999998766644 55666777
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC--CccHHHHHHHH
Q psy8160 131 LHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD--PKSGQSLYLLG 208 (324)
Q Consensus 131 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~lg 208 (324)
+ ...+++++|+..++++.+.. ++ ...+.....++.. .++++++...+.++.... |.++..|..+|
T Consensus 87 l-~~~~~~~~A~~~~~~~~~~~--~~---~~~l~~~l~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a 153 (280)
T PF13429_consen 87 L-LQDGDPEEALKLAEKAYERD--GD---PRYLLSALQLYYR-------LGDYDEAEELLEKLEELPAAPDSARFWLALA 153 (280)
T ss_dssp -------------------------------------H-HHH-------TT-HHHHHHHHHHHHH-T---T-HHHHHHHH
T ss_pred c-cccccccccccccccccccc--cc---cchhhHHHHHHHH-------HhHHHHHHHHHHHHHhccCCCCCHHHHHHHH
Confidence 6 68899999999999888766 32 2244455555544 348889999999977554 67889999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCc
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTS 277 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~ 277 (324)
.++...|++++|+..|+++++.+|+++.++..++.++...|+ ++++...+ ..|..+|.+|...|++++
T Consensus 154 ~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~-~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~ 232 (280)
T PF13429_consen 154 EIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGD-YDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEE 232 (280)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH-HHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccc
Confidence 999999999999999999999999999999999999999999 99866666 567889999999999999
Q ss_pred chHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 278 NNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 278 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
|+..|+++++.+|+||.+...++.+. ...|.+++|+.-++.
T Consensus 233 --Al~~~~~~~~~~p~d~~~~~~~a~~l-~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 233 --ALEYLEKALKLNPDDPLWLLAYADAL-EQAGRKDEALRLRRQ 273 (280)
T ss_dssp --HHHHHHHHHHHSTT-HHHHHHHHHHH-T--------------
T ss_pred --cccccccccccccccccccccccccc-ccccccccccccccc
Confidence 99999999999999999999888764 467888888877654
No 28
>KOG1173|consensus
Probab=99.89 E-value=1.3e-20 Score=161.07 Aligned_cols=251 Identities=13% Similarity=0.071 Sum_probs=161.2
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
++-.+.++.+++.+|=++.. .-+.+| |+...|+..+=...-.+.+ ..|+.+..|...|-.|...|++.+|.++|.+
T Consensus 261 ~~c~kit~~lle~dpfh~~~--~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SK 337 (611)
T KOG1173|consen 261 KECLKITEELLEKDPFHLPC--LPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSK 337 (611)
T ss_pred HHHHHHhHHHHhhCCCCcch--HHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHH
Confidence 66666667777777643222 334445 5566666555555555555 6677666666667666666777777777776
Q ss_pred HHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHH
Q psy8160 110 CLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHC 189 (324)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~ 189 (324)
+...+|... .+|...|+.+...|+.++|+.+|..|-+.. |+... ....+|.-|.. +++++.|.++
T Consensus 338 at~lD~~fg----paWl~fghsfa~e~EhdQAmaaY~tAarl~--~G~hl--P~LYlgmey~~-------t~n~kLAe~F 402 (611)
T KOG1173|consen 338 ATTLDPTFG----PAWLAFGHSFAGEGEHDQAMAAYFTAARLM--PGCHL--PSLYLGMEYMR-------TNNLKLAEKF 402 (611)
T ss_pred HhhcCcccc----HHHHHHhHHhhhcchHHHHHHHHHHHHHhc--cCCcc--hHHHHHHHHHH-------hccHHHHHHH
Confidence 666655554 566666777766677777777776666666 55433 33334444433 3366667777
Q ss_pred HHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc----CCCC---HHHHHHhHHHHhhcCCCHHHHHHHH---
Q psy8160 190 LQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK----SEGN---ADTWCSIGNKDFSNNSNREDYHQAL--- 259 (324)
Q Consensus 190 ~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~---~~~~~~lg~~~~~~~~~~~~A~~~~--- 259 (324)
|.+|+.+.|.+|-.+..+|.+.+..+.|.+|..+|+.++.. .+.. ...+.+||.++.+++. +++|+.+|
T Consensus 403 f~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~-~~eAI~~~q~a 481 (611)
T KOG1173|consen 403 FKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK-YEEAIDYYQKA 481 (611)
T ss_pred HHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh-HHHHHHHHHHH
Confidence 77777777777766667777766666777777777666621 1111 2345666777777777 77776666
Q ss_pred --------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchh
Q psy8160 260 --------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKD 302 (324)
Q Consensus 260 --------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 302 (324)
.++..+|.+|..+|+++. |+++|.+|+.+.|+|..+..-|+
T Consensus 482 L~l~~k~~~~~asig~iy~llgnld~--Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 482 LLLSPKDASTHASIGYIYHLLGNLDK--AIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHcCCCchhHHHHHHHHHHHhcChHH--HHHHHHHHHhcCCccHHHHHHHH
Confidence 566677777777777888 99999999999999876655554
No 29
>PRK12370 invasion protein regulator; Provisional
Probab=99.88 E-value=2.7e-20 Score=169.94 Aligned_cols=237 Identities=14% Similarity=0.049 Sum_probs=193.9
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHh---------ccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVN---------NEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEY 100 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~---------~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~ 100 (324)
++|+..|+++++++|++ ..++..+|.++... +++++|+..+++++ .+|++..++..+|.++...|++
T Consensus 278 ~~A~~~~~~Al~ldP~~---a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 278 QQALKLLTQCVNMSPNS---IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 79999999999999975 45788889887644 34899999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccc
Q psy8160 101 DSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKS 180 (324)
Q Consensus 101 ~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 180 (324)
++|+..|++++..+|.+. .+++.+|.++...|++++|+..+++++..+ |.+.. ....++.+++. .
T Consensus 355 ~~A~~~~~~Al~l~P~~~----~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~--~~~~~~~~~~~-------~ 419 (553)
T PRK12370 355 IVGSLLFKQANLLSPISA----DIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAA--AGITKLWITYY-------H 419 (553)
T ss_pred HHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChh--hHHHHHHHHHh-------c
Confidence 999999999999998886 789999999999999999999999999999 87633 44555555544 3
Q ss_pred hhHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHH-HHH
Q psy8160 181 HRETLAIHCLQKSIEAD-PKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDY-HQA 258 (324)
Q Consensus 181 ~~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A-~~~ 258 (324)
+++++|+..+++++... |+++..+..+|.++...|++++|...+.++....|.+..++..++.+|...|+ -..+ ++.
T Consensus 420 g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~a~~~l~~ 498 (553)
T PRK12370 420 TGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE-RALPTIRE 498 (553)
T ss_pred cCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH-HHHHHHHH
Confidence 48999999999999875 78899999999999999999999999999999999989999999998888776 3222 222
Q ss_pred H--------HHHHhhHHHHHHcCCCCcchHHHHHHHhhh
Q psy8160 259 L--------NKYRDLGDFLVINNIPTSNNNRQCYNSYST 289 (324)
Q Consensus 259 ~--------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~ 289 (324)
+ .-...+..+|.-.|+.+. +... +++.+
T Consensus 499 ll~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~-~~~~~ 534 (553)
T PRK12370 499 FLESEQRIDNNPGLLPLVLVAHGEAIA--EKMW-NKFKN 534 (553)
T ss_pred HHHHhhHhhcCchHHHHHHHHHhhhHH--HHHH-HHhhc
Confidence 2 111225555655665555 5444 55544
No 30
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.88 E-value=3.4e-20 Score=151.14 Aligned_cols=196 Identities=16% Similarity=0.116 Sum_probs=177.6
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
...+++.+|.++...|++++|+..+++++ .+|.+...+..+|.++...|++++|++.+++++...|... .++..+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~~ 105 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG----DVLNNY 105 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHH
Confidence 46789999999999999999999999999 9999999999999999999999999999999998877765 788999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
|.++...|++++|+..|++++.....+.. ...+..+|.++.. .+++++|+..+.+++..+|.++..+..+|
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~-------~g~~~~A~~~~~~~~~~~~~~~~~~~~la 176 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQP--ARSLENAGLCALK-------AGDFDKAEKYLTRALQIDPQRPESLLELA 176 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccc--hHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCcCChHHHHHHH
Confidence 99999999999999999999986522333 4588889999876 55999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.++...|++++|+..+++++...|.++..+..++.++...|+ .++|....
T Consensus 177 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~ 226 (234)
T TIGR02521 177 ELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGD-VAAAQRYG 226 (234)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh-HHHHHHHH
Confidence 999999999999999999999999999999999999999999 88886653
No 31
>KOG0624|consensus
Probab=99.88 E-value=2.3e-20 Score=150.74 Aligned_cols=268 Identities=13% Similarity=0.146 Sum_probs=205.4
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
..|+..|..+++.+|+ +..++|+.|.+|..+|.-.-|+..+.+++ +.|+...+....|.++..+|.+++|+..|.+
T Consensus 55 sDALt~yHaAve~dp~---~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~ 131 (504)
T KOG0624|consen 55 SDALTHYHAAVEGDPN---NYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQ 131 (504)
T ss_pred HHHHHHHHHHHcCCch---hHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHH
Confidence 8899999999999986 56688999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHhcCCCcccHHHHH------------HHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhc
Q psy8160 110 CLIDASPCTFTKLEVR------------FHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLG 177 (324)
Q Consensus 110 ~l~~~~~~~~~~~~~~------------~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 177 (324)
+|..+|...... ++. ......+...|+...|++....++++. |=+ +..+...+.||..
T Consensus 132 vl~~~~s~~~~~-eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~--~Wd--a~l~~~Rakc~i~----- 201 (504)
T KOG0624|consen 132 VLQHEPSNGLVL-EAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ--PWD--ASLRQARAKCYIA----- 201 (504)
T ss_pred HHhcCCCcchhH-HHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC--cch--hHHHHHHHHHHHh-----
Confidence 998888654321 222 122333445578888888888888877 544 4466777777755
Q ss_pred ccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH-------------------
Q psy8160 178 EKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTW------------------- 238 (324)
Q Consensus 178 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~------------------- 238 (324)
.++...||..++.+-++..++.+.++.++.+++..|+.+.++...+.+++++|++-..+
T Consensus 202 --~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ 279 (504)
T KOG0624|consen 202 --EGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQA 279 (504)
T ss_pred --cCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44777888888888888888888888888888888888888888888888888772211
Q ss_pred -------------------------------HHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCC
Q psy8160 239 -------------------------------CSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPT 276 (324)
Q Consensus 239 -------------------------------~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~ 276 (324)
..+..|+..-++ +.+|++.+ +++...+..|.-...|+
T Consensus 280 ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~-~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD 358 (504)
T KOG0624|consen 280 IEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQ-FGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYD 358 (504)
T ss_pred HhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCC-HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHH
Confidence 123455666666 77776666 67788888888888899
Q ss_pred cchHHHHHHHhhhcCCChhhhhhchhhhcc----CChhhHHHHH
Q psy8160 277 SNNNRQCYNSYSTSIASCKHINNNKDFSNN----SNREDYHQAL 316 (324)
Q Consensus 277 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~----~~~~~~~~a~ 316 (324)
. ||..|++|.+.+|+|..++..+..... ..+++|.+.+
T Consensus 359 ~--AI~dye~A~e~n~sn~~~reGle~Akrlkkqs~kRDYYKIL 400 (504)
T KOG0624|consen 359 D--AIHDYEKALELNESNTRAREGLERAKRLKKQSGKRDYYKIL 400 (504)
T ss_pred H--HHHHHHHHHhcCcccHHHHHHHHHHHHHHHHhccchHHHHh
Confidence 9 999999999999998888877664322 4555555543
No 32
>KOG1173|consensus
Probab=99.87 E-value=3.9e-20 Score=158.14 Aligned_cols=253 Identities=9% Similarity=0.037 Sum_probs=226.3
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
+.++....+..++...+|.+..+.+...+ .||-+.......-.++...|+..+-...=-+.++..|... -.|+.+
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a----~sW~aV 318 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKA----LSWFAV 318 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCC----cchhhH
Confidence 34567778888999999999999999999 9998888776644477778877776666667788888776 679999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
|..|...|++.+|..+|.++..++ |.. +.+|...|..+.. .++.++|+.+|..|-++.|......+.+|
T Consensus 319 g~YYl~i~k~seARry~SKat~lD--~~f--gpaWl~fghsfa~-------e~EhdQAmaaY~tAarl~~G~hlP~LYlg 387 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD--PTF--GPAWLAFGHSFAG-------EGEHDQAMAAYFTAARLMPGCHLPSLYLG 387 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC--ccc--cHHHHHHhHHhhh-------cchHHHHHHHHHHHHHhccCCcchHHHHH
Confidence 999999999999999999999999 776 5599999998855 45899999999999999999998889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH------------------HHHHhhHHHHH
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL------------------NKYRDLGDFLV 270 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~------------------~~~~~lg~~~~ 270 (324)
.-|..++++.-|..+|.+|+.+.|.+|-....+|.+.+..+. |.+|+.+| ..+.+||.+|+
T Consensus 388 mey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~-y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~R 466 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEE-YPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYR 466 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhh-hHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHH
Confidence 999999999999999999999999999999999999999999 99999999 34899999999
Q ss_pred HcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 271 INNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 271 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
+++.+++ |+.+|++++.+.|.++.+...++++.. -.|++++|++.|++
T Consensus 467 kl~~~~e--AI~~~q~aL~l~~k~~~~~asig~iy~-llgnld~Aid~fhK 514 (611)
T KOG1173|consen 467 KLNKYEE--AIDYYQKALLLSPKDASTHASIGYIYH-LLGNLDKAIDHFHK 514 (611)
T ss_pred HHhhHHH--HHHHHHHHHHcCCCchhHHHHHHHHHH-HhcChHHHHHHHHH
Confidence 9999999 999999999999999999999998765 46899999999875
No 33
>PRK12370 invasion protein regulator; Provisional
Probab=99.87 E-value=5.9e-20 Score=167.74 Aligned_cols=244 Identities=12% Similarity=-0.007 Sum_probs=197.2
Q ss_pred HHHHHHHHHH---hccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhc---------ccHHHHHHHHHHHHHhcCCCccc
Q psy8160 54 HLRLGLMFKV---NNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVN---------NEYDSALKHLTLCLIDASPCTFT 120 (324)
Q Consensus 54 ~~~lg~~~~~---~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~~l~~~~~~~~~ 120 (324)
++..|..+.. .+++++|+.+|++++ .+|++..++..+|.++... +++++|+..+++++..+|.+.
T Consensus 261 ~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~-- 338 (553)
T PRK12370 261 VYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNP-- 338 (553)
T ss_pred HHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCH--
Confidence 4445654443 356789999999999 9999999999998876633 458999999999999998886
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc
Q psy8160 121 KLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS 200 (324)
Q Consensus 121 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 200 (324)
.++..+|.++...|++++|+..|+++++.+ |++ +.+++.+|.++.. .|++++|+..++++++++|.+
T Consensus 339 --~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~--P~~--~~a~~~lg~~l~~-------~G~~~eAi~~~~~Al~l~P~~ 405 (553)
T PRK12370 339 --QALGLLGLINTIHSEYIVGSLLFKQANLLS--PIS--ADIKYYYGWNLFM-------AGQLEEALQTINECLKLDPTR 405 (553)
T ss_pred --HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCC--HHHHHHHHHHHHH-------CCCHHHHHHHHHHHHhcCCCC
Confidence 889999999999999999999999999999 988 5599999999976 559999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-CCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHH
Q psy8160 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKS-EGNADTWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDF 268 (324)
Q Consensus 201 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~ 268 (324)
+..++.++.++...|++++|+..+++++... |+++..+..+|.++...|+ +++|+..+ ..+..++.+
T Consensus 406 ~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~-~~eA~~~~~~~~~~~~~~~~~~~~l~~~ 484 (553)
T PRK12370 406 AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGK-HELARKLTKEISTQEITGLIAVNLLYAE 484 (553)
T ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCC-HHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 8887777878888999999999999999875 8899999999999999999 99999998 456677888
Q ss_pred HHHcCCCCcchHHHHHHHhhh---cCCChhhhhhchhhhccCChhhHHHHHHHH
Q psy8160 269 LVINNIPTSNNNRQCYNSYST---SIASCKHINNNKDFSNNSNREDYHQALNKY 319 (324)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~ 319 (324)
|...|+ . |...+++.++ ..|.++.....+.. ....+++...+...
T Consensus 485 ~~~~g~--~--a~~~l~~ll~~~~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~ 532 (553)
T PRK12370 485 YCQNSE--R--ALPTIREFLESEQRIDNNPGLLPLVLV--AHGEAIAEKMWNKF 532 (553)
T ss_pred HhccHH--H--HHHHHHHHHHHhhHhhcCchHHHHHHH--HHhhhHHHHHHHHh
Confidence 877774 6 6666666554 45555544332222 13334555555443
No 34
>KOG1125|consensus
Probab=99.87 E-value=6.2e-21 Score=163.57 Aligned_cols=216 Identities=17% Similarity=0.240 Sum_probs=176.5
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
.+|.-+|+.+++.+|+ ..++|..||.+....++-..|+..+++++ +||++..+...||..|..+|.-.+|++++.+
T Consensus 302 ~~A~LafEAAVkqdP~---haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~ 378 (579)
T KOG1125|consen 302 SEAALAFEAAVKQDPQ---HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDK 378 (579)
T ss_pred hHHHHHHHHHHhhChH---HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 8899999999999976 56789999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHhcCCCcccHH---HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHH
Q psy8160 110 CLIDASPCTFTKL---EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLA 186 (324)
Q Consensus 110 ~l~~~~~~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A 186 (324)
-+...|+...... .-.+....-......+..-.+.|-.+.... |....+++...||.+|+. .+++++|
T Consensus 379 Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~--~~~~DpdvQ~~LGVLy~l-------s~efdra 449 (579)
T KOG1125|consen 379 WIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQL--PTKIDPDVQSGLGVLYNL-------SGEFDRA 449 (579)
T ss_pred HHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhC--CCCCChhHHhhhHHHHhc-------chHHHHH
Confidence 9877765432100 000000000111112333345666666666 533347799999999976 5599999
Q ss_pred HHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 187 IHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 187 ~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
+.+|+.||..+|++...|..||-++....+..+|+..|++|+++.|....++++||++++.+|. |++|+++|
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~-ykEA~~hl 521 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA-YKEAVKHL 521 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh-HHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 99999988
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.86 E-value=1.5e-21 Score=163.99 Aligned_cols=250 Identities=15% Similarity=0.083 Sum_probs=104.3
Q ss_pred hhhHhHHHHH--HHHHHHHHHHhccC-CCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHh
Q psy8160 21 KLQQFGKTLN--IKAIKTFQQLLYVD-PSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKV 96 (324)
Q Consensus 21 ~l~~~~~~~~--~~A~~~~~~~l~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~ 96 (324)
.++.+....+ ++|++.+.+.+... | +.+.+.+..+|.+....++++.|+..|++++ .++.+......++.+ ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~--~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAP--PDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence 4555444444 88999886655443 2 2345678888989999999999999999999 888877777777777 68
Q ss_pred cccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhh
Q psy8160 97 NNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTL 176 (324)
Q Consensus 97 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~ 176 (324)
.+++++|+..+++++...+.. ..+.....++...++++++...++++......+.+ +..+..+|.++..
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~-----~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~a~~~~~---- 158 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERDGDP-----RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDS--ARFWLALAEIYEQ---- 158 (280)
T ss_dssp ---------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T---HHHHHHHHHHHHH----
T ss_pred ccccccccccccccccccccc-----chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCC--HHHHHHHHHHHHH----
Confidence 899999999888887654322 44556677788889999999999887765533444 5588888888866
Q ss_pred cccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHH
Q psy8160 177 GEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYH 256 (324)
Q Consensus 177 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~ 256 (324)
.|+.++|+.+++++++.+|+++.++..++.++...|+++++...+.......|+++..|..+|.++...|+ +++|+
T Consensus 159 ---~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~-~~~Al 234 (280)
T PF13429_consen 159 ---LGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGR-YEEAL 234 (280)
T ss_dssp ---CCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT--HHHHH
T ss_pred ---cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccc-ccccc
Confidence 55899999999999999999999999999999999999998888888887778888899999999999999 99999
Q ss_pred HHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhc
Q psy8160 257 QAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTS 290 (324)
Q Consensus 257 ~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~ 290 (324)
.+| .++..+|.++...|+.++ |...++++++.
T Consensus 235 ~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~--A~~~~~~~~~~ 277 (280)
T PF13429_consen 235 EYLEKALKLNPDDPLWLLAYADALEQAGRKDE--ALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHT--------------------
T ss_pred cccccccccccccccccccccccccccccccc--ccccccccccc
Confidence 998 677889999999999999 99999888753
No 36
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.86 E-value=1.4e-19 Score=152.48 Aligned_cols=232 Identities=12% Similarity=0.108 Sum_probs=167.1
Q ss_pred HHHHHHHHHHhccCCCc-ccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSY-LRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLT 108 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 108 (324)
+.++..+.+++...|-. +..+..|+.+|.++...|++++|+..|++++ .+|++..++..+|.++...|++++|+..|+
T Consensus 43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 122 (296)
T PRK11189 43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFD 122 (296)
T ss_pred HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 78999999999754422 2346789999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHH
Q psy8160 109 LCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIH 188 (324)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~ 188 (324)
+++...|... .++.++|.++...|++++|++.|++++..+ |++.. .. .+.+.. .. .+++++|+.
T Consensus 123 ~Al~l~P~~~----~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~----~~-~~~~l~-~~----~~~~~~A~~ 186 (296)
T PRK11189 123 SVLELDPTYN----YAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPY----RA-LWLYLA-ES----KLDPKQAKE 186 (296)
T ss_pred HHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH----HH-HHHHHH-Hc----cCCHHHHHH
Confidence 9999888876 789999999999999999999999999998 87631 11 112211 11 337899999
Q ss_pred HHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHH
Q psy8160 189 CLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDF 268 (324)
Q Consensus 189 ~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~ 268 (324)
.+.+++...+. ..|. .+.+....|+...+ ..+..+.+..+..+..- ....++|+++|.+
T Consensus 187 ~l~~~~~~~~~--~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~-----------------~~~~ea~~~Lg~~ 245 (296)
T PRK11189 187 NLKQRYEKLDK--EQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELA-----------------ERLCETYFYLAKY 245 (296)
T ss_pred HHHHHHhhCCc--cccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHH-----------------HHHHHHHHHHHHH
Confidence 99877654332 2332 45666667776443 23333332222222110 0001346666666
Q ss_pred HHHcCCCCcchHHHHHHHhhhcCC-Chhhhhhch
Q psy8160 269 LVINNIPTSNNNRQCYNSYSTSIA-SCKHINNNK 301 (324)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 301 (324)
+...|++++ |+.+|++|++.+| +.+..+..+
T Consensus 246 ~~~~g~~~~--A~~~~~~Al~~~~~~~~e~~~~~ 277 (296)
T PRK11189 246 YLSLGDLDE--AAALFKLALANNVYNFVEHRYAL 277 (296)
T ss_pred HHHCCCHHH--HHHHHHHHHHhCCchHHHHHHHH
Confidence 666677888 9999999999997 555554443
No 37
>KOG0624|consensus
Probab=99.86 E-value=1.3e-19 Score=146.45 Aligned_cols=261 Identities=16% Similarity=0.169 Sum_probs=222.3
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
..+-++.+|.-++..|++..|+.+|..++ .||++..+.+..|.+|...|+...|+..+.++|...|+.. -+..+.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~----~ARiQR 112 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFM----AARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHH----HHHHHh
Confidence 45568999999999999999999999999 9999999999999999999999999999999999998876 678899
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCch-hhHHHHHHHHHH-----Hhh--hhhcccchhHHHHHHHHHHHhhhCCcc
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHL-KADICRQLGWMY-----HCI--DTLGEKSHRETLAIHCLQKSIEADPKS 200 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~l~~~~-----~~~--~~~~~~~~~~~~A~~~~~~al~~~~~~ 200 (324)
|.++..+|++++|...|+.++..+ |++- ..++...++.+- ..+ +..| .|++..|+.+..+.+++.|-+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~--~GD~~~ai~~i~~llEi~~Wd 188 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASG--SGDCQNAIEMITHLLEIQPWD 188 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhc--CCchhhHHHHHHHHHhcCcch
Confidence 999999999999999999999988 5331 133444444332 111 1122 568999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH---------------------
Q psy8160 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL--------------------- 259 (324)
Q Consensus 201 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~--------------------- 259 (324)
...+...+.||...|+...||.-++.+-++..++.+.++.++.+++..|+ .+.++...
T Consensus 189 a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd-~~~sL~~iRECLKldpdHK~Cf~~YKklk 267 (504)
T KOG0624|consen 189 ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGD-AENSLKEIRECLKLDPDHKLCFPFYKKLK 267 (504)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhh-HHHHHHHHHHHHccCcchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 88886443
Q ss_pred ----------------------------------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhh
Q psy8160 260 ----------------------------------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINN 299 (324)
Q Consensus 260 ----------------------------------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 299 (324)
.++..+..|+...+++.+ ||..+..+++.+|+|..+.-
T Consensus 268 Kv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~e--AiqqC~evL~~d~~dv~~l~ 345 (504)
T KOG0624|consen 268 KVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGE--AIQQCKEVLDIDPDDVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHH--HHHHHHHHHhcCchHHHHHH
Confidence 344557788888899999 99999999999999988766
Q ss_pred chhhhccCChhhHHHHHHHHhhc
Q psy8160 300 NKDFSNNSNREDYHQALNKYRDL 322 (324)
Q Consensus 300 ~l~~~~~~~~~~~~~a~~~~~~~ 322 (324)
..+... +..+.|+.|+..|...
T Consensus 346 dRAeA~-l~dE~YD~AI~dye~A 367 (504)
T KOG0624|consen 346 DRAEAY-LGDEMYDDAIHDYEKA 367 (504)
T ss_pred HHHHHH-hhhHHHHHHHHHHHHH
Confidence 555443 4568899999888753
No 38
>KOG1129|consensus
Probab=99.86 E-value=3.3e-20 Score=148.91 Aligned_cols=243 Identities=13% Similarity=0.084 Sum_probs=212.3
Q ss_pred HHHHhccHHHHHHHHHHHh-cC---CCC-------chhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 60 MFKVNNEYDSALKHLTLCL-ID---ASP-------CTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 60 ~~~~~~~~~~A~~~~~~al-~~---~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
+|+..+|...|-......+ .+ |+. ..+...+|.+|...|-+.+|.+.++..+...|.. +.+..+
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~-----dTfllL 262 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHP-----DTFLLL 262 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCch-----hHHHHH
Confidence 6777888888776555544 32 222 1223348999999999999999999999776543 688899
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
+.+|....+++.|+..|.+.++.. |.++- .+..+++++.. ++++++|.++|+.+++.+|.+.++.-.+|
T Consensus 263 skvY~ridQP~~AL~~~~~gld~f--P~~VT--~l~g~ARi~ea-------m~~~~~a~~lYk~vlk~~~~nvEaiAcia 331 (478)
T KOG1129|consen 263 SKVYQRIDQPERALLVIGEGLDSF--PFDVT--YLLGQARIHEA-------MEQQEDALQLYKLVLKLHPINVEAIACIA 331 (478)
T ss_pred HHHHHHhccHHHHHHHHhhhhhcC--Cchhh--hhhhhHHHHHH-------HHhHHHHHHHHHHHHhcCCccceeeeeee
Confidence 999999999999999999999988 88744 78888888865 44899999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH--------------HHHHhhHHHHHHcCC
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL--------------NKYRDLGDFLVINNI 274 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~--------------~~~~~lg~~~~~~~~ 274 (324)
..|+-.++++-|+.+|++.+++.-.+|+.+.++|.|++..++ ++-++.+| ++|++||.+....|+
T Consensus 332 ~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ-~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD 410 (478)
T KOG1129|consen 332 VGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQ-IDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD 410 (478)
T ss_pred eccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcc-hhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc
Confidence 999999999999999999999999999999999999999999 99999988 899999999999999
Q ss_pred CCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhhc
Q psy8160 275 PTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRDL 322 (324)
Q Consensus 275 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 322 (324)
+.. |..+|+-++..||++....+||+.+.. ..|+..+|..-+...
T Consensus 411 ~nl--A~rcfrlaL~~d~~h~ealnNLavL~~-r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 411 FNL--AKRCFRLALTSDAQHGEALNNLAVLAA-RSGDILGARSLLNAA 455 (478)
T ss_pred hHH--HHHHHHHHhccCcchHHHHHhHHHHHh-hcCchHHHHHHHHHh
Confidence 999 999999999999999999999998865 568888888776543
No 39
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.86 E-value=3.1e-18 Score=137.40 Aligned_cols=261 Identities=18% Similarity=0.161 Sum_probs=210.6
Q ss_pred hHHHHH---HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhh-----HHHHHHHHh
Q psy8160 25 FGKTLN---IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFT-----KLEGLMFKV 96 (324)
Q Consensus 25 ~~~~~~---~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~-----~~la~~~~~ 96 (324)
++++++ ++|+..|..+++.+|+ ..++++.||..|...|..+.|+..-+..+..|+..... ..||.-|..
T Consensus 43 lNfLLs~Q~dKAvdlF~e~l~~d~~---t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 43 LNFLLSNQPDKAVDLFLEMLQEDPE---TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred HHHHhhcCcchHHHHHHHHHhcCch---hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Confidence 345555 9999999999999975 56789999999999999999999998777666665443 337889999
Q ss_pred cccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh-hHHHHHHHHHHHhhhh
Q psy8160 97 NNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK-ADICRQLGWMYHCIDT 175 (324)
Q Consensus 97 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~l~~~~~~~~~ 175 (324)
.|-++.|+..|....+...... .+...+-.+|....++++|++.-++.....+.+...+ +..++.++..+..
T Consensus 120 aGl~DRAE~~f~~L~de~efa~----~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~--- 192 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEGEFAE----GALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA--- 192 (389)
T ss_pred hhhhhHHHHHHHHHhcchhhhH----HHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh---
Confidence 9999999999998876443333 6888999999999999999999999998885444433 5566666666544
Q ss_pred hcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-HHHHHHhHHHHhhcCCCHHH
Q psy8160 176 LGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN-ADTWCSIGNKDFSNNSNRED 254 (324)
Q Consensus 176 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~~~~~ 254 (324)
..+.+.|...+.++++.+|++..+-..+|.+....|+|+.|++.++.+++.+|+. +++.-.|-.||.+.|+ .++
T Consensus 193 ----~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~-~~~ 267 (389)
T COG2956 193 ----SSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK-PAE 267 (389)
T ss_pred ----hhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC-HHH
Confidence 4488899999999999999999999999999999999999999999999999987 6778889999999999 998
Q ss_pred HHHHH----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchh
Q psy8160 255 YHQAL----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKD 302 (324)
Q Consensus 255 A~~~~----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 302 (324)
.+..+ ++-.-+..+-....-.+. |.....+-+...|+-.....-++
T Consensus 268 ~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~--Aq~~l~~Ql~r~Pt~~gf~rl~~ 323 (389)
T COG2956 268 GLNFLRRAMETNTGADAELMLADLIELQEGIDA--AQAYLTRQLRRKPTMRGFHRLMD 323 (389)
T ss_pred HHHHHHHHHHccCCccHHHHHHHHHHHhhChHH--HHHHHHHHHhhCCcHHHHHHHHH
Confidence 88777 444455555555555677 88888888888898665544443
No 40
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.85 E-value=5.3e-19 Score=135.64 Aligned_cols=188 Identities=19% Similarity=0.136 Sum_probs=166.4
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
...+...||.-|...|++..|.+-+++++ .||++..++..+|.+|...|+.+.|.+.|++++...|.+. +++.+.
T Consensus 34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G----dVLNNY 109 (250)
T COG3063 34 AAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG----DVLNNY 109 (250)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc----chhhhh
Confidence 45689999999999999999999999999 9999999999999999999999999999999999999887 999999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
|..+..+|++++|...|++++.....+.. +.++-++|+|..+ .|+.+.|..+|+++++.+|+.+.....++
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~--s~t~eN~G~Cal~-------~gq~~~A~~~l~raL~~dp~~~~~~l~~a 180 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADPAYGEP--SDTLENLGLCALK-------AGQFDQAEEYLKRALELDPQFPPALLELA 180 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCCCCCCc--chhhhhhHHHHhh-------cCCchhHHHHHHHHHHhCcCCChHHHHHH
Confidence 99999999999999999999987544443 5699999999977 45899999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCC
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNS 250 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 250 (324)
..++..|++-.|..++++....-+-..+.+.....+-...|+
T Consensus 181 ~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd 222 (250)
T COG3063 181 RLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGD 222 (250)
T ss_pred HHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhcc
Confidence 999999999999999999887777666655544455555565
No 41
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.84 E-value=3.2e-18 Score=137.32 Aligned_cols=228 Identities=15% Similarity=0.116 Sum_probs=202.5
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Q psy8160 55 LRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHE 133 (324)
Q Consensus 55 ~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~ 133 (324)
|--|.-+.-.++.++|+..|..++ .||...++...||++|...|..+.|+...+..+.....+...+..+.+.+|.-|.
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym 118 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYM 118 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHH
Confidence 455777788899999999999999 9999999999999999999999999999997776544444466778999999999
Q ss_pred HhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH-----HHHHHHH
Q psy8160 134 VQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG-----QSLYLLG 208 (324)
Q Consensus 134 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~lg 208 (324)
..|-++.|...|....+.. ... ..++..+..+|.. ..+|++|++.-++...+.+... ..++.++
T Consensus 119 ~aGl~DRAE~~f~~L~de~--efa--~~AlqqLl~IYQ~-------treW~KAId~A~~L~k~~~q~~~~eIAqfyCELA 187 (389)
T COG2956 119 AAGLLDRAEDIFNQLVDEG--EFA--EGALQQLLNIYQA-------TREWEKAIDVAERLVKLGGQTYRVEIAQFYCELA 187 (389)
T ss_pred HhhhhhHHHHHHHHHhcch--hhh--HHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHH
Confidence 9999999999999988765 222 3488899999966 5599999999999998887654 6789999
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH------------HHHHhhHHHHHHcCCCC
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL------------NKYRDLGDFLVINNIPT 276 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~------------~~~~~lg~~~~~~~~~~ 276 (324)
..+....+.+.|...+.+|++.+|++..+-..+|.++...|+ |+.|++.+ ++.-.|-.+|.+.|+..
T Consensus 188 q~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~-y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~ 266 (389)
T COG2956 188 QQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGD-YQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPA 266 (389)
T ss_pred HHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccc-hHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHH
Confidence 999999999999999999999999999999999999999999 99999999 77888999999999999
Q ss_pred cchHHHHHHHhhhcCCChhh
Q psy8160 277 SNNNRQCYNSYSTSIASCKH 296 (324)
Q Consensus 277 ~~~A~~~~~~al~~~p~~~~ 296 (324)
+ .+..+..+.+..|+..-
T Consensus 267 ~--~~~fL~~~~~~~~g~~~ 284 (389)
T COG2956 267 E--GLNFLRRAMETNTGADA 284 (389)
T ss_pred H--HHHHHHHHHHccCCccH
Confidence 9 99999999998887543
No 42
>KOG1174|consensus
Probab=99.84 E-value=4.7e-18 Score=140.50 Aligned_cols=252 Identities=16% Similarity=0.090 Sum_probs=187.6
Q ss_pred HHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHH-----------------
Q psy8160 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMF----------------- 94 (324)
Q Consensus 33 A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~----------------- 94 (324)
+...+......- +.+......+|.+++..|++++|+..|+++. +||........-|.++
T Consensus 217 ~t~l~le~~~~l---r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf 293 (564)
T KOG1174|consen 217 QTFLMLHDNTTL---RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLF 293 (564)
T ss_pred hHHHHHHhhccC---CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHH
Confidence 334444444444 4467788999999999999999999999999 9998877655533333
Q ss_pred -----------------HhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCc
Q psy8160 95 -----------------KVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVH 157 (324)
Q Consensus 95 -----------------~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 157 (324)
....+++.|+.+-+++++.++.+. +++...|..+...++.++|+-.|+.+..+. |..
T Consensus 294 ~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~----~alilKG~lL~~~~R~~~A~IaFR~Aq~La--p~r 367 (564)
T KOG1174|consen 294 AKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNH----EALILKGRLLIALERHTQAVIAFRTAQMLA--PYR 367 (564)
T ss_pred hhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccc----hHHHhccHHHHhccchHHHHHHHHHHHhcc--hhh
Confidence 444566666666666666665554 556666666677777777777777776666 655
Q ss_pred hhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH-HHHHHc-CCHHHHHHHHHHHHccCCCCH
Q psy8160 158 LKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG-RCFAAV-GKVHDAFLAYRNSVEKSEGNA 235 (324)
Q Consensus 158 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg-~~~~~~-~~~~~A~~~~~~al~~~p~~~ 235 (324)
.+ ++.++-.+|.. .+++.+|.-.-..++...|.++.++..+| .+++.. .--++|.+++++++.+.|...
T Consensus 368 L~--~Y~GL~hsYLA-------~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~ 438 (564)
T KOG1174|consen 368 LE--IYRGLFHSYLA-------QKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYT 438 (564)
T ss_pred HH--HHHHHHHHHHh-------hchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccH
Confidence 33 66666666655 33666677777777777777777666665 333322 234569999999999999999
Q ss_pred HHHHHhHHHHhhcCCCHHHHHHHH----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhc
Q psy8160 236 DTWCSIGNKDFSNNSNREDYHQAL----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSN 305 (324)
Q Consensus 236 ~~~~~lg~~~~~~~~~~~~A~~~~----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 305 (324)
.+-..++.++...|. +++++..+ ..+..||.++...+.+++ |+++|..|+.+||++......+..+.
T Consensus 439 ~AV~~~AEL~~~Eg~-~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~--am~~y~~ALr~dP~~~~sl~Gl~~lE 515 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGP-TKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQK--AMEYYYKALRQDPKSKRTLRGLRLLE 515 (564)
T ss_pred HHHHHHHHHHHhhCc-cchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHH--HHHHHHHHHhcCccchHHHHHHHHHH
Confidence 999999999999999 99999888 677889999999999999 99999999999999998887776543
No 43
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.83 E-value=1.7e-18 Score=145.79 Aligned_cols=215 Identities=13% Similarity=0.137 Sum_probs=157.8
Q ss_pred chhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHH
Q psy8160 19 VPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFK 95 (324)
Q Consensus 19 ~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~ 95 (324)
+..+|.+....+ ++|+..|.++++++|+. ..+++.+|.++...|++++|+..|++++ ++|++..++..+|.++.
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~---~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDM---ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 445555444334 89999999999999874 5689999999999999999999999999 99999999999999999
Q ss_pred hcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhh
Q psy8160 96 VNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDT 175 (324)
Q Consensus 96 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~ 175 (324)
..|++++|++.+++++...|.+.. ..++ ..+....+++++|+..|.+++... +.... .+ .+..++.. .
T Consensus 144 ~~g~~~eA~~~~~~al~~~P~~~~--~~~~---~~l~~~~~~~~~A~~~l~~~~~~~--~~~~~--~~-~~~~~~lg--~ 211 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQDDPNDPY--RALW---LYLAESKLDPKQAKENLKQRYEKL--DKEQW--GW-NIVEFYLG--K 211 (296)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHH--HHHH---HHHHHccCCHHHHHHHHHHHHhhC--Ccccc--HH-HHHHHHcc--C
Confidence 999999999999999999887651 0111 123445678999999998877554 22211 11 22222211 0
Q ss_pred hcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-CCHHHHHHhHHHHhhcC
Q psy8160 176 LGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSE-GNADTWCSIGNKDFSNN 249 (324)
Q Consensus 176 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~ 249 (324)
... ...++.+...++...++.|..+++|+.+|.++...|++++|+.+|++++..+| ++.+..+.+..+....+
T Consensus 212 ~~~-~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 212 ISE-ETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQ 285 (296)
T ss_pred CCH-HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHh
Confidence 100 00122233333444566777889999999999999999999999999999997 66777666655544433
No 44
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.82 E-value=6.9e-18 Score=137.48 Aligned_cols=190 Identities=13% Similarity=0.110 Sum_probs=150.2
Q ss_pred chhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHH
Q psy8160 84 CTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADIC 163 (324)
Q Consensus 84 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 163 (324)
...+..+|.++...|++++|+..+++++...|... .++..+|.++...|++++|+..+++++... |.+ ..++
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~--~~~~ 102 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDY----LAYLALALYYQQLGELEKAEDSFRRALTLN--PNN--GDVL 102 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCC--HHHH
Confidence 44566678888889999999999999988776654 778888999999999999999999998887 766 3488
Q ss_pred HHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHh
Q psy8160 164 RQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD--PKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSI 241 (324)
Q Consensus 164 ~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 241 (324)
..+|.++.. .+++++|+..+++++... |.....+..+|.++...|++++|...+.+++..+|+++..+..+
T Consensus 103 ~~~~~~~~~-------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 175 (234)
T TIGR02521 103 NNYGTFLCQ-------QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLEL 175 (234)
T ss_pred HHHHHHHHH-------cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHH
Confidence 888888866 458899999999988753 45567888889999999999999999999999999888888888
Q ss_pred HHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcC
Q psy8160 242 GNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSI 291 (324)
Q Consensus 242 g~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~ 291 (324)
|.++...|+ +++|+..+ ..+..++.++...|+.++ |..+.+.+....
T Consensus 176 a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--a~~~~~~~~~~~ 233 (234)
T TIGR02521 176 AELYYLRGQ-YKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAA--AQRYGAQLQKLF 233 (234)
T ss_pred HHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHH--HHHHHHHHHhhC
Confidence 888888888 77777666 344456666666666666 666666555443
No 45
>KOG1125|consensus
Probab=99.82 E-value=6.1e-19 Score=151.45 Aligned_cols=224 Identities=13% Similarity=0.063 Sum_probs=194.2
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Q psy8160 55 LRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHE 133 (324)
Q Consensus 55 ~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~ 133 (324)
|..|..+++.|+..+|.-.|+.++ .||.+..+|..||.+....++-..|+..++++++..|.+. +++..||-.|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nl----eaLmaLAVSyt 364 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNL----EALMALAVSYT 364 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccH----HHHHHHHHHHh
Confidence 788999999999999999999999 9999999999999999999999999999999999999987 99999999999
Q ss_pred HhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhh----hhhcccchhHHHHHHHHHHHhhhCC--ccHHHHHHH
Q psy8160 134 VQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCI----DTLGEKSHRETLAIHCLQKSIEADP--KSGQSLYLL 207 (324)
Q Consensus 134 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~l 207 (324)
..|.-.+|+.++.+-+... |.... ...+..-... +..+ ......-.+.|..+....| .++++...|
T Consensus 365 Neg~q~~Al~~L~~Wi~~~--p~y~~----l~~a~~~~~~~~~~s~~~--~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~L 436 (579)
T KOG1125|consen 365 NEGLQNQALKMLDKWIRNK--PKYVH----LVSAGENEDFENTKSFLD--SSHLAHIQELFLEAARQLPTKIDPDVQSGL 436 (579)
T ss_pred hhhhHHHHHHHHHHHHHhC--ccchh----ccccCccccccCCcCCCC--HHHHHHHHHHHHHHHHhCCCCCChhHHhhh
Confidence 9999999999999998876 54311 1111000000 0000 1234555667777777778 789999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCC
Q psy8160 208 GRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPT 276 (324)
Q Consensus 208 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~ 276 (324)
|.+|...|+|++|+.+|+.||..+|++...|..||..+....+ ..+||..| .++++||..+...|-|+
T Consensus 437 GVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~-s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~yk 515 (579)
T KOG1125|consen 437 GVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNR-SEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYK 515 (579)
T ss_pred HHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcc-cHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHH
Confidence 9999999999999999999999999999999999999999999 99999999 88999999999999999
Q ss_pred cchHHHHHHHhhhcCCC
Q psy8160 277 SNNNRQCYNSYSTSIAS 293 (324)
Q Consensus 277 ~~~A~~~~~~al~~~p~ 293 (324)
+ |+++|-.||.+.+.
T Consensus 516 E--A~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 516 E--AVKHLLEALSMQRK 530 (579)
T ss_pred H--HHHHHHHHHHhhhc
Confidence 9 99999999998776
No 46
>KOG4162|consensus
Probab=99.82 E-value=8.2e-18 Score=148.80 Aligned_cols=254 Identities=17% Similarity=0.175 Sum_probs=199.4
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-c-CCCCchhhHHHHHHHHhcccHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-I-DASPCTFTKLEGLMFKVNNEYDSALKHLT 108 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 108 (324)
.++++.++++++.+|++| .+.|.++.-|..+++.+.|+.+.++++ . ..+....+.+++.++..++++.+|+...+
T Consensus 461 ~kslqale~av~~d~~dp---~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd 537 (799)
T KOG4162|consen 461 KKSLQALEEAVQFDPTDP---LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVD 537 (799)
T ss_pred HHHHHHHHHHHhcCCCCc---hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 889999999999998754 588999999999999999999999999 7 56778889999999999999999999999
Q ss_pred HHHHhcCCCcc---cHHH--------------------HHH----------------HHHHHHHHhhcHHHHHHHHHHHH
Q psy8160 109 LCLIDASPCTF---TKLE--------------------VRF----------------HIAHLHEVQRKYKTAKDSYEQLL 149 (324)
Q Consensus 109 ~~l~~~~~~~~---~~~~--------------------~~~----------------~la~~~~~~~~~~~A~~~~~~al 149 (324)
.++...+.+.. .+.+ .|- .-+..+...++...|++.++++.
T Consensus 538 ~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls 617 (799)
T KOG4162|consen 538 AALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS 617 (799)
T ss_pred HHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH
Confidence 99988776321 0000 000 00111111223333444333332
Q ss_pred hcC-----------CC--------CCch---hhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHH
Q psy8160 150 KED-----------DL--------PVHL---KADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLL 207 (324)
Q Consensus 150 ~~~-----------~~--------~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 207 (324)
..- .. |++. .-..|...+..+.. .+..++|..++.++-.++|..+..|+..
T Consensus 618 ~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~-------~~~~~~a~~CL~Ea~~~~~l~~~~~~~~ 690 (799)
T KOG4162|consen 618 SLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLL-------SGNDDEARSCLLEASKIDPLSASVYYLR 690 (799)
T ss_pred HHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHh-------cCCchHHHHHHHHHHhcchhhHHHHHHh
Confidence 210 00 1110 01244455555544 4478889999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHH--HH-----------HHHHhhHHHHHHcCC
Q psy8160 208 GRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQ--AL-----------NKYRDLGDFLVINNI 274 (324)
Q Consensus 208 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~--~~-----------~~~~~lg~~~~~~~~ 274 (324)
|.++...|++.+|.+.|..|+.++|+++.....+|.++.+.|+ ..-|.+ .+ ++|+.+|.++.+.|+
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~-~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd 769 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGS-PRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD 769 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-cchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc
Confidence 9999999999999999999999999999999999999999999 888777 44 999999999999999
Q ss_pred CCcchHHHHHHHhhhcCCChhhh
Q psy8160 275 PTSNNNRQCYNSYSTSIASCKHI 297 (324)
Q Consensus 275 ~~~~~A~~~~~~al~~~p~~~~~ 297 (324)
.++ |.++|+.|+++++++|.-
T Consensus 770 ~~~--Aaecf~aa~qLe~S~PV~ 790 (799)
T KOG4162|consen 770 SKQ--AAECFQAALQLEESNPVL 790 (799)
T ss_pred hHH--HHHHHHHHHhhccCCCcc
Confidence 999 999999999999999864
No 47
>KOG2003|consensus
Probab=99.82 E-value=2.4e-18 Score=144.02 Aligned_cols=218 Identities=17% Similarity=0.128 Sum_probs=145.6
Q ss_pred cHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHH
Q psy8160 66 EYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDS 144 (324)
Q Consensus 66 ~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 144 (324)
++-.|-.+-..++ +|.-+..+....|.+-...|+++.|.++|+.++.....+. ++++++|..+..+|+.++|+++
T Consensus 471 ~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~----ealfniglt~e~~~~ldeald~ 546 (840)
T KOG2003|consen 471 DFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT----EALFNIGLTAEALGNLDEALDC 546 (840)
T ss_pred chhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH----HHHHHhcccHHHhcCHHHHHHH
Confidence 4555555555555 5555555555566666667777777777777776555544 6677777777777777777777
Q ss_pred HHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHH
Q psy8160 145 YEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAY 224 (324)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 224 (324)
|-++-.+- -++ ++++.+++.+|.. +.+..+|++++-++..+-|++|.++..||.+|-+.|+-.+|.+++
T Consensus 547 f~klh~il--~nn--~evl~qianiye~-------led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ 615 (840)
T KOG2003|consen 547 FLKLHAIL--LNN--AEVLVQIANIYEL-------LEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCH 615 (840)
T ss_pred HHHHHHHH--Hhh--HHHHHHHHHHHHH-------hhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhh
Confidence 76655443 333 4477777777744 226667777777777777777777777777777777777777777
Q ss_pred HHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH----------HHH-HhhHHHHHHcCCCCcchHHHHHHHhhhcCCC
Q psy8160 225 RNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL----------NKY-RDLGDFLVINNIPTSNNNRQCYNSYSTSIAS 293 (324)
Q Consensus 225 ~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~----------~~~-~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (324)
-......|.+.++.-.||..|....- +++|+.+| ..| ..++.|+.+.|+|+. |.+.|+......|.
T Consensus 616 ydsyryfp~nie~iewl~ayyidtqf-~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqk--a~d~yk~~hrkfpe 692 (840)
T KOG2003|consen 616 YDSYRYFPCNIETIEWLAAYYIDTQF-SEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQK--AFDLYKDIHRKFPE 692 (840)
T ss_pred hhcccccCcchHHHHHHHHHHHhhHH-HHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHH--HHHHHHHHHHhCcc
Confidence 77777777777777777777777777 77777776 333 345667777777777 77777777777777
Q ss_pred hhhhhhch
Q psy8160 294 CKHINNNK 301 (324)
Q Consensus 294 ~~~~~~~l 301 (324)
+......|
T Consensus 693 dldclkfl 700 (840)
T KOG2003|consen 693 DLDCLKFL 700 (840)
T ss_pred chHHHHHH
Confidence 66654443
No 48
>KOG2003|consensus
Probab=99.81 E-value=1.4e-17 Score=139.46 Aligned_cols=253 Identities=9% Similarity=0.079 Sum_probs=210.1
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCc-hhhHHHHHHHHhc--ccHHHHHHHHHHHHHhcCCCcccHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPC-TFTKLEGLMFKVN--NEYDSALKHLTLCLIDASPCTFTKLEVRF 126 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~-~~~~~la~~~~~~--~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 126 (324)
.+.-...+--+.+.|+++.|++.++-.- .|.... .+...+..++..+ .++..|..+-..++....-+. .++.
T Consensus 419 ~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~----~a~~ 494 (840)
T KOG2003|consen 419 IDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNA----AALT 494 (840)
T ss_pred hhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCH----HHhh
Confidence 3445666778899999999999997554 443322 2334466666665 368999998888887655554 6788
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHH
Q psy8160 127 HIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYL 206 (324)
Q Consensus 127 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 206 (324)
+.|.+-+..|++++|.+.|++++..+ ... .++++++|..+.. .++.++|+.+|-+.-.+--++.+++++
T Consensus 495 nkgn~~f~ngd~dka~~~ykeal~nd--asc--~ealfniglt~e~-------~~~ldeald~f~klh~il~nn~evl~q 563 (840)
T KOG2003|consen 495 NKGNIAFANGDLDKAAEFYKEALNND--ASC--TEALFNIGLTAEA-------LGNLDEALDCFLKLHAILLNNAEVLVQ 563 (840)
T ss_pred cCCceeeecCcHHHHHHHHHHHHcCc--hHH--HHHHHHhcccHHH-------hcCHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 88999999999999999999999887 555 4499999999855 459999999999998888889999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCC
Q psy8160 207 LGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIP 275 (324)
Q Consensus 207 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~ 275 (324)
++.+|..+.+..+|++++.++..+-|++|..+..||.+|-+.|+ -.+|.+++ ++---||..|....-.
T Consensus 564 ianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegd-ksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ 642 (840)
T KOG2003|consen 564 IANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGD-KSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFS 642 (840)
T ss_pred HHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccc-hhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999 99999987 5566688888888888
Q ss_pred CcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhhc
Q psy8160 276 TSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRDL 322 (324)
Q Consensus 276 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 322 (324)
++ |+.+|++|.-+.|+-..++ .+-.++....|+|.+|++.|+|.
T Consensus 643 ek--ai~y~ekaaliqp~~~kwq-lmiasc~rrsgnyqka~d~yk~~ 686 (840)
T KOG2003|consen 643 EK--AINYFEKAALIQPNQSKWQ-LMIASCFRRSGNYQKAFDLYKDI 686 (840)
T ss_pred HH--HHHHHHHHHhcCccHHHHH-HHHHHHHHhcccHHHHHHHHHHH
Confidence 89 9999999999999855433 34457788889999999999974
No 49
>KOG1840|consensus
Probab=99.81 E-value=6.9e-18 Score=148.13 Aligned_cols=232 Identities=15% Similarity=0.114 Sum_probs=188.5
Q ss_pred ccchHHHHHHHHHHHHhccHHHHHHHHHHHh-c--------CCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcC---
Q psy8160 48 LRANEVHLRLGLMFKVNNEYDSALKHLTLCL-I--------DASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDAS--- 115 (324)
Q Consensus 48 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~--- 115 (324)
|....+...+|..|..+|+|++|+..++.++ + .|.-......+|.+|..++++++|+..|++++....
T Consensus 196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 4455677789999999999999999999999 6 344444445589999999999999999999987643
Q ss_pred -CCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC---CCchh-hHHHHHHHHHHHhhhhhcccchhHHHHHHHH
Q psy8160 116 -PCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDL---PVHLK-ADICRQLGWMYHCIDTLGEKSHRETLAIHCL 190 (324)
Q Consensus 116 -~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~ 190 (324)
......+.++.+||..|...|++++|..++++++.+... ..+.+ +..+..++.++.. .+++++|+.++
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~-------~~~~Eea~~l~ 348 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQS-------MNEYEEAKKLL 348 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHH-------hcchhHHHHHH
Confidence 344456778999999999999999999999999877421 11211 4456666666644 34899999999
Q ss_pred HHHhhhC--------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--------CCCHHHHHHhHHHHhhcCCCHHH
Q psy8160 191 QKSIEAD--------PKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKS--------EGNADTWCSIGNKDFSNNSNRED 254 (324)
Q Consensus 191 ~~al~~~--------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~~ 254 (324)
++++++- |.-+..+.+||.+|..+|++++|...|++|+.+. +........+|..|.+.+. +.+
T Consensus 349 q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~-~~~ 427 (508)
T KOG1840|consen 349 QKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK-YEE 427 (508)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc-cch
Confidence 9987652 2335788999999999999999999999999864 2335577889999999999 999
Q ss_pred HHHHH------------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhh
Q psy8160 255 YHQAL------------------NKYRDLGDFLVINNIPTSNNNRQCYNSYST 289 (324)
Q Consensus 255 A~~~~------------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~ 289 (324)
|.+.| ..+.+||.+|..+|++++ |+++-.+++.
T Consensus 428 a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~--a~~~~~~~~~ 478 (508)
T KOG1840|consen 428 AEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEA--AEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHH--HHHHHHHHHH
Confidence 98888 788999999999999999 9999999884
No 50
>PLN02789 farnesyltranstransferase
Probab=99.80 E-value=2.7e-17 Score=138.44 Aligned_cols=206 Identities=11% Similarity=0.046 Sum_probs=113.9
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhc-cHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccH--HHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNN-EYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEY--DSALKH 106 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~--~~A~~~ 106 (324)
++|+..+.++++++|+ ...++...|.++...| ++++++..+.+++ .+|.+..++...+.++...|+. ++++.+
T Consensus 54 erAL~lt~~aI~lnP~---~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~ 130 (320)
T PLN02789 54 PRALDLTADVIRLNPG---NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF 130 (320)
T ss_pred HHHHHHHHHHHHHCch---hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence 5566666666666654 2345555666665555 4566666666666 6666666666555555555542 455556
Q ss_pred HHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHH
Q psy8160 107 LTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLA 186 (324)
Q Consensus 107 ~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A 186 (324)
+++++..+|.+. .+|...+.++...|++++|++.+.++++.+ |.+ ..+|..++.+.......|......+++
T Consensus 131 ~~kal~~dpkNy----~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~N--~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 131 TRKILSLDAKNY----HAWSHRQWVLRTLGGWEDELEYCHQLLEED--VRN--NSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHhCcccH----HHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CCc--hhHHHHHHHHHHhccccccccccHHHH
Confidence 666665555554 556666666666666666666666666665 544 235666555553321111101112345
Q ss_pred HHHHHHHhhhCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhh
Q psy8160 187 IHCLQKSIEADPKSGQSLYLLGRCFAA----VGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFS 247 (324)
Q Consensus 187 ~~~~~~al~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 247 (324)
+.+..+++..+|++..+|..++.++.. .++..+|+..+.+++..+|.++.+..-|+++|..
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 555556666666666666666655555 2334456666666666566666655556655554
No 51
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.80 E-value=2.4e-17 Score=126.63 Aligned_cols=196 Identities=13% Similarity=0.100 Sum_probs=170.5
Q ss_pred hhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHH
Q psy8160 86 FTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQ 165 (324)
Q Consensus 86 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 165 (324)
+...||.-|..+|++..|.+.++++|..+|... .+|..+|.+|...|+.+.|.+.|++++.++ |++ .+++.+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~----~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~--p~~--GdVLNN 108 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY----LAHLVRAHYYQKLGENDLADESYRKALSLA--PNN--GDVLNN 108 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHcCChhhHHHHHHHHHhcC--CCc--cchhhh
Confidence 344578899999999999999999999999886 889999999999999999999999999999 888 669999
Q ss_pred HHHHHHhhhhhcccchhHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHH
Q psy8160 166 LGWMYHCIDTLGEKSHRETLAIHCLQKSIEA--DPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243 (324)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 243 (324)
.|+.... .|++++|...|++++.. .+..+.+|-++|.|..+.|+++.|.+.|+++++.+|+++.....++.
T Consensus 109 YG~FLC~-------qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~ 181 (250)
T COG3063 109 YGAFLCA-------QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELAR 181 (250)
T ss_pred hhHHHHh-------CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHH
Confidence 9999977 55999999999999864 35566899999999999999999999999999999999999999999
Q ss_pred HHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhh
Q psy8160 244 KDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINN 299 (324)
Q Consensus 244 ~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 299 (324)
.++..|+ +..|...+ +.+.....+-...|+-.. |-.+=.+.-...|..+....
T Consensus 182 ~~~~~~~-y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~--a~~Y~~qL~r~fP~s~e~q~ 245 (250)
T COG3063 182 LHYKAGD-YAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAA--AQRYQAQLQRLFPYSEEYQT 245 (250)
T ss_pred HHHhccc-chHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHH--HHHHHHHHHHhCCCcHHHHh
Confidence 9999999 99998888 344444455666777777 66666667788898876544
No 52
>PLN02789 farnesyltranstransferase
Probab=99.79 E-value=1e-16 Score=134.93 Aligned_cols=217 Identities=10% Similarity=0.044 Sum_probs=160.0
Q ss_pred HHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcc-cHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhc
Q psy8160 60 MFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNN-EYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRK 137 (324)
Q Consensus 60 ~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~ 137 (324)
++...+.+++|+..+.++| .+|.+..++...+.++...| ++++++..+++++..+|.+. .+|...+.+....|+
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkny----qaW~~R~~~l~~l~~ 121 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNY----QIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcch----HHhHHHHHHHHHcCc
Confidence 3444578889999999999 99999999999999999998 68999999999999999887 889999999988887
Q ss_pred H--HHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH-----HHHHHHHHH
Q psy8160 138 Y--KTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG-----QSLYLLGRC 210 (324)
Q Consensus 138 ~--~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~lg~~ 210 (324)
. +++++.+.+++..+ |.+.+ +|...+++........+....++++++. .....++ .+...++..
T Consensus 122 ~~~~~el~~~~kal~~d--pkNy~--AW~~R~w~l~~l~~~~eeL~~~~~~I~~-----d~~N~sAW~~R~~vl~~~~~l 192 (320)
T PLN02789 122 DAANKELEFTRKILSLD--AKNYH--AWSHRQWVLRTLGGWEDELEYCHQLLEE-----DVRNNSAWNQRYFVITRSPLL 192 (320)
T ss_pred hhhHHHHHHHHHHHHhC--cccHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHH-----CCCchhHHHHHHHHHHhcccc
Confidence 4 77899999999999 98866 9999999996644333233344444432 1121222 111122110
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhh----cCCCHHHHHHHH-----------HHHHhhHHHHHHcCC-
Q psy8160 211 FAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFS----NNSNREDYHQAL-----------NKYRDLGDFLVINNI- 274 (324)
Q Consensus 211 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~- 274 (324)
-......++++.+..+++.++|++..+|..++.++.. .+. ..+|+..+ .++--|+.+|....+
T Consensus 193 ~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~-~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~ 271 (320)
T PLN02789 193 GGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVS-DPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQP 271 (320)
T ss_pred ccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccccc-chhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhcc
Confidence 0011124578888999999999999999999999988 455 56677776 455667888876432
Q ss_pred -----------------CCcchHHHHHHHhhhcCC
Q psy8160 275 -----------------PTSNNNRQCYNSYSTSIA 292 (324)
Q Consensus 275 -----------------~~~~~A~~~~~~al~~~p 292 (324)
..+ |...|+..-+.||
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~--a~~~~~~l~~~d~ 304 (320)
T PLN02789 272 TAEFRDTVDTLAEELSDSTL--AQAVCSELEVADP 304 (320)
T ss_pred chhhhhhhhccccccccHHH--HHHHHHHHHhhCc
Confidence 245 8888887766666
No 53
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.79 E-value=1.7e-16 Score=139.99 Aligned_cols=270 Identities=11% Similarity=0.031 Sum_probs=143.1
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCc-hhhHHHHHHHHhcccHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPC-TFTKLEGLMFKVNNEYDSALKHLT 108 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~ 108 (324)
+.|.+...++.+..|+. .-.+.-.|.++..+|+++.|..++.++. ..|++. .+....+.++...|+++.|+..++
T Consensus 101 ~~A~~~l~~~~~~~~~~---~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~ 177 (409)
T TIGR00540 101 AKAEKLIAKNADHAAEP---VLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVD 177 (409)
T ss_pred HHHHHHHHHHhhcCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 66666666666666542 2234555666667777777777777766 556654 344445667777777777777777
Q ss_pred HHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCC-Cch-hhHHHHHHHHHHHhhhhhcccchhHHHH
Q psy8160 109 LCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLP-VHL-KADICRQLGWMYHCIDTLGEKSHRETLA 186 (324)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~A 186 (324)
+.+...|.+. .++..++.++...|++++|++.+.+..+....+ ... ........+.+- .+..+++
T Consensus 178 ~l~~~~P~~~----~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~---------~~~~~~~ 244 (409)
T TIGR00540 178 KLLEMAPRHK----EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD---------EAMADEG 244 (409)
T ss_pred HHHHhCCCCH----HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH---------HHHHhcC
Confidence 7776666655 566667777777777777777776666543111 111 011111111111 1123334
Q ss_pred HHHHHHHhhhCC----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH--HHhHHHHhhcCCCHHHHHHHH-
Q psy8160 187 IHCLQKSIEADP----KSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTW--CSIGNKDFSNNSNREDYHQAL- 259 (324)
Q Consensus 187 ~~~~~~al~~~~----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~lg~~~~~~~~~~~~A~~~~- 259 (324)
...+.++.+..| +++..+..+|..+...|++++|+..++++++..|++.... ..........++ ...+++.+
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~-~~~~~~~~e 323 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPED-NEKLEKLIE 323 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCC-hHHHHHHHH
Confidence 444444444444 3556666666666666666666666666666666555321 112222222344 44444444
Q ss_pred ------------HHHHhhHHHHHHcCCCCcchHHHHHH--HhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 260 ------------NKYRDLGDFLVINNIPTSNNNRQCYN--SYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 260 ------------~~~~~lg~~~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
.....+|.++.+.|++++ |.++|+ ++++..|++.... .++.+. ...|+.++|.+.|++
T Consensus 324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~--A~~~le~a~a~~~~p~~~~~~-~La~ll-~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 324 KQAKNVDDKPKCCINRALGQLLMKHGEFIE--AADAFKNVAACKEQLDANDLA-MAADAF-DQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHcccHHH--HHHHHHHhHHhhcCCCHHHHH-HHHHHH-HHcCCHHHHHHHHHH
Confidence 122355666666666666 666666 4555556554433 343332 233445555554443
No 54
>KOG2076|consensus
Probab=99.77 E-value=9.8e-16 Score=137.94 Aligned_cols=263 Identities=13% Similarity=0.162 Sum_probs=196.2
Q ss_pred HHHHHhhhhccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cC
Q psy8160 4 VIQKNLVEGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-ID 80 (324)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~ 80 (324)
++++.|...+..+..|..||.++-..+ ++++..+-.+--++|+ +.+.|..++....++|++++|.-||.+|| .+
T Consensus 161 i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~---d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~ 237 (895)
T KOG2076|consen 161 ILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK---DYELWKRLADLSEQLGNINQARYCYSRAIQAN 237 (895)
T ss_pred HHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 456777788889999999999877776 9999999999999986 44789999999999999999999999999 99
Q ss_pred CCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHH-HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC------
Q psy8160 81 ASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKL-EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDD------ 153 (324)
Q Consensus 81 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------ 153 (324)
|.+.......+.+|..+|+...|...|.+++...|+...... +..+..++.+...++-+.|++.++.++....
T Consensus 238 p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~e 317 (895)
T KOG2076|consen 238 PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLE 317 (895)
T ss_pred CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccccccc
Confidence 999999999999999999999999999999999885544222 2344446666666666777777777765300
Q ss_pred ----------------------------------------------------CCC----chh------------------
Q psy8160 154 ----------------------------------------------------LPV----HLK------------------ 159 (324)
Q Consensus 154 ----------------------------------------------------~~~----~~~------------------ 159 (324)
.|+ ++.
T Consensus 318 d~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e 397 (895)
T KOG2076|consen 318 DLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLE 397 (895)
T ss_pred HHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHH
Confidence 000 000
Q ss_pred ----------------hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHHcCCHHHHHH
Q psy8160 160 ----------------ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK-SGQSLYLLGRCFAAVGKVHDAFL 222 (324)
Q Consensus 160 ----------------~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~ 222 (324)
.+.+..++.++. ..+++.+|+.++..++...+. +...|+.+|.||..+|.++.|++
T Consensus 398 ~ll~~l~~~n~~~~d~~dL~~d~a~al~-------~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e 470 (895)
T KOG2076|consen 398 ALLHFLVEDNVWVSDDVDLYLDLADALT-------NIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIE 470 (895)
T ss_pred HHHHHHHHhcCChhhhHHHHHHHHHHHH-------hcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHH
Confidence 112222222222 245778888888887766553 34678888888888888888888
Q ss_pred HHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH--------------------HHHHhhHHHHHHcCCCCc
Q psy8160 223 AYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL--------------------NKYRDLGDFLVINNIPTS 277 (324)
Q Consensus 223 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~--------------------~~~~~lg~~~~~~~~~~~ 277 (324)
+|++++...|++.++...|+.++.++|+ +++|++.+ ........++.+.|..++
T Consensus 471 ~y~kvl~~~p~~~D~Ri~Lasl~~~~g~-~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 471 FYEKVLILAPDNLDARITLASLYQQLGN-HEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHhcCCCchhhhhhHHHHHHhcCC-HHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 8888888888888888888888888888 88887777 344556666666665555
No 55
>KOG0550|consensus
Probab=99.77 E-value=3.2e-17 Score=135.63 Aligned_cols=269 Identities=13% Similarity=0.073 Sum_probs=215.5
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
..|+..|..+++..|+. +..|...+.++...++|+.|....++.+ ++|.........+.++...++..+|.+.++.
T Consensus 66 ~nal~~yt~Ai~~~pd~---a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~ 142 (486)
T KOG0550|consen 66 GNALKNYTFAIDMCPDN---ASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKS 142 (486)
T ss_pred HHHHHHHHHHHHhCccc---hhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhh
Confidence 88999999999999873 5678899999999999999999999999 9999999888888888888877777755542
Q ss_pred HH--------H----hcCCCc--ccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhh
Q psy8160 110 CL--------I----DASPCT--FTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDT 175 (324)
Q Consensus 110 ~l--------~----~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~ 175 (324)
.- . ..|... +.-......-+.|+...|++++|.+.--.++.++ +.+ +++++..|.+++.
T Consensus 143 ~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~~n--~~al~vrg~~~yy--- 215 (486)
T KOG0550|consen 143 KQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD--ATN--AEALYVRGLCLYY--- 215 (486)
T ss_pred hhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc--cch--hHHHHhccccccc---
Confidence 11 0 001111 0001233445889999999999999999999998 776 4588888888866
Q ss_pred hcccchhHHHHHHHHHHHhhhCCccH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----HHHHH
Q psy8160 176 LGEKSHRETLAIHCLQKSIEADPKSG------------QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN----ADTWC 239 (324)
Q Consensus 176 ~~~~~~~~~~A~~~~~~al~~~~~~~------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~ 239 (324)
..+.+.|+..|++++.++|+.. ..|-.-|.-.+..|++.+|.+.|..+|.++|++ +..+.
T Consensus 216 ----~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~ 291 (486)
T KOG0550|consen 216 ----NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYG 291 (486)
T ss_pred ----ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHH
Confidence 4489999999999999999875 457778999999999999999999999999987 45688
Q ss_pred HhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhh----h
Q psy8160 240 SIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDF----S 304 (324)
Q Consensus 240 ~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~----~ 304 (324)
+++.+...+|+ ..+|+... .++...|.++...+++++ |++.|++|++...+ +.++..+.. +
T Consensus 292 nra~v~~rLgr-l~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~--AV~d~~~a~q~~~s-~e~r~~l~~A~~aL 367 (486)
T KOG0550|consen 292 NRALVNIRLGR-LREAISDCNEALKIDSSYIKALLRRANCHLALEKWEE--AVEDYEKAMQLEKD-CEIRRTLREAQLAL 367 (486)
T ss_pred HhHhhhcccCC-chhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHhhccc-cchHHHHHHHHHHH
Confidence 89999999999 99999887 788899999999999999 99999999998876 444444432 2
Q ss_pred ccCChhhHHHHHH
Q psy8160 305 NNSNREDYHQALN 317 (324)
Q Consensus 305 ~~~~~~~~~~a~~ 317 (324)
...+|+++.+-+.
T Consensus 368 kkSkRkd~ykilG 380 (486)
T KOG0550|consen 368 KKSKRKDWYKILG 380 (486)
T ss_pred HHhhhhhHHHHhh
Confidence 2255666655443
No 56
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.76 E-value=9.1e-16 Score=134.77 Aligned_cols=105 Identities=11% Similarity=0.119 Sum_probs=65.9
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.|+.++|...++++++. |.++......+.+ ..++.+++++..++.++.+|+++..+..+|.++...++ |++|.++|
T Consensus 276 ~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~-~~~A~~~l 351 (398)
T PRK10747 276 CDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGE-WQEASLAF 351 (398)
T ss_pred CCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC-HHHHHHHH
Confidence 33666666666666663 3344443333333 33666666666666666677777666667777777776 77766666
Q ss_pred ----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhc
Q psy8160 260 ----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTS 290 (324)
Q Consensus 260 ----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~ 290 (324)
..+..++.++.+.|+.++ |.++|++++.+
T Consensus 352 e~al~~~P~~~~~~~La~~~~~~g~~~~--A~~~~~~~l~~ 390 (398)
T PRK10747 352 RAALKQRPDAYDYAWLADALDRLHKPEE--AAAMRRDGLML 390 (398)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCHHH--HHHHHHHHHhh
Confidence 445666666666666666 77777666654
No 57
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.76 E-value=2.4e-15 Score=132.73 Aligned_cols=254 Identities=7% Similarity=-0.078 Sum_probs=202.9
Q ss_pred hHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhccc
Q psy8160 23 QQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNE 99 (324)
Q Consensus 23 ~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~ 99 (324)
+.+....+ +.|.+++.++.+..|+.. ..+....+.++...|+++.|...+++.+ ..|++..+...++.++...|+
T Consensus 125 A~aa~~~g~~~~A~~~l~~a~~~~p~~~--l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d 202 (409)
T TIGR00540 125 AEAAQQRGDEARANQHLEEAAELAGNDN--ILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGA 202 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCcCc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Confidence 44444434 999999999999888632 2345666999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCch--hhHHHHHHHHHHHhhhhhc
Q psy8160 100 YDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHL--KADICRQLGWMYHCIDTLG 177 (324)
Q Consensus 100 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~l~~~~~~~~~~~ 177 (324)
+++|++.+.+..+....+......+......-....+..+++.+.+..+.... |... ....+..++..+..
T Consensus 203 ~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~--p~~~~~~~~l~~~~a~~l~~----- 275 (409)
T TIGR00540 203 WQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQ--PRHRRHNIALKIALAEHLID----- 275 (409)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHC--CHHHhCCHHHHHHHHHHHHH-----
Confidence 99999999999877544432111222233333345556667777898888877 6421 25588888888866
Q ss_pred ccchhHHHHHHHHHHHhhhCCccHHHH--HHHHHHHHHcCCHHHHHHHHHHHHccCCCCH--HHHHHhHHHHhhcCCCHH
Q psy8160 178 EKSHRETLAIHCLQKSIEADPKSGQSL--YLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA--DTWCSIGNKDFSNNSNRE 253 (324)
Q Consensus 178 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~~~~~~ 253 (324)
.|++++|+..++++++..|++.... ..........++.+.+++.++++++.+|+++ .....+|.++.+.|+ |+
T Consensus 276 --~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~-~~ 352 (409)
T TIGR00540 276 --CDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGE-FI 352 (409)
T ss_pred --CCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHccc-HH
Confidence 5599999999999999999988532 3334444556889999999999999999999 888999999999999 99
Q ss_pred HHHHHH------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhc
Q psy8160 254 DYHQAL------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTS 290 (324)
Q Consensus 254 ~A~~~~------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~ 290 (324)
+|.++| ..+..+|.++.+.|+.++ |.++|++++..
T Consensus 353 ~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~--A~~~~~~~l~~ 399 (409)
T TIGR00540 353 EAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAE--AAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHH
Confidence 999988 457799999999999999 99999998754
No 58
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.74 E-value=9.8e-15 Score=136.78 Aligned_cols=114 Identities=9% Similarity=0.021 Sum_probs=64.1
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHH--HHHHHhcccHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLE--GLMFKVNNEYDSALKHLT 108 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~l--a~~~~~~~~~~~A~~~~~ 108 (324)
++|++.|+++++.+|+.+. .++ .+..++...|++++|+.++++++ +|.+......+ |.++...|++++|++.|+
T Consensus 51 ~~Al~~L~qaL~~~P~~~~--av~-dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~gdyd~Aiely~ 126 (822)
T PRK14574 51 APVLDYLQEESKAGPLQSG--QVD-DWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEKRWDQALALWQ 126 (822)
T ss_pred HHHHHHHHHHHhhCccchh--hHH-HHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666666666666665321 122 55555555566666666666666 33333333333 556666666666666666
Q ss_pred HHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC
Q psy8160 109 LCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 152 (324)
+++...|.+. +++..++..+...++.++|++.++++...+
T Consensus 127 kaL~~dP~n~----~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d 166 (822)
T PRK14574 127 SSLKKDPTNP----DLISGMIMTQADAGRGGVVLKQATELAERD 166 (822)
T ss_pred HHHhhCCCCH----HHHHHHHHHHhhcCCHHHHHHHHHHhcccC
Confidence 6666655554 455555555556666666666666655555
No 59
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.74 E-value=5.5e-15 Score=138.45 Aligned_cols=255 Identities=11% Similarity=0.007 Sum_probs=196.3
Q ss_pred ccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHH
Q psy8160 48 LRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRF 126 (324)
Q Consensus 48 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 126 (324)
|..+...+..+.+.++.|+++.|+..|++++ .+|.+......+..++...|+.++|+.++++++...+... ....
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~----~~ll 106 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISS----RGLA 106 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCH----HHHH
Confidence 3355678999999999999999999999999 9999965444778888888999999999999993222222 4455
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHH
Q psy8160 127 HIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYL 206 (324)
Q Consensus 127 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 206 (324)
.+|.++...|++++|++.|+++++.+ |++ +.++..++.++.. .++.++|+..++++...+|.+... ..
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~d--P~n--~~~l~gLa~~y~~-------~~q~~eAl~~l~~l~~~dp~~~~~-l~ 174 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKD--PTN--PDLISGMIMTQAD-------AGRGGVVLKQATELAERDPTVQNY-MT 174 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC--CCC--HHHHHHHHHHHhh-------cCCHHHHHHHHHHhcccCcchHHH-HH
Confidence 56889999999999999999999999 988 4588888777755 448999999999999999985554 55
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH---------------------------
Q psy8160 207 LGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL--------------------------- 259 (324)
Q Consensus 207 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~--------------------------- 259 (324)
++.++...++..+|+..++++++.+|++.+++..+..+....|- ...|.+..
T Consensus 175 layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~-~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a 253 (822)
T PRK14574 175 LSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRI-VEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMA 253 (822)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-cHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhc
Confidence 66666667888779999999999999998777766666555555 44444333
Q ss_pred --------------------------------------------------------------------------HHHHhh
Q psy8160 260 --------------------------------------------------------------------------NKYRDL 265 (324)
Q Consensus 260 --------------------------------------------------------------------------~~~~~l 265 (324)
-+-.-.
T Consensus 254 ~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 254 VLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 234557
Q ss_pred HHHHHHcCCCCcchHHHHHHHhhhcCCC----hhhh--hhchhhhccCChhhHHHHHHHHhhc
Q psy8160 266 GDFLVINNIPTSNNNRQCYNSYSTSIAS----CKHI--NNNKDFSNNSNREDYHQALNKYRDL 322 (324)
Q Consensus 266 g~~~~~~~~~~~~~A~~~~~~al~~~p~----~~~~--~~~l~~~~~~~~~~~~~a~~~~~~~ 322 (324)
|..|...+++++ |+..|+.++.-.|. .+.. ...| +-..++.+.|++|..-..++
T Consensus 334 adayl~~~~P~k--A~~l~~~~~~~~~~~~~~~~~~~~~~~L-~yA~ld~e~~~~A~~~l~~~ 393 (822)
T PRK14574 334 ASAYIDRRLPEK--AAPILSSLYYSDGKTFRNSDDLLDADDL-YYSLNESEQLDKAYQFAVNY 393 (822)
T ss_pred HHHHHhcCCcHH--HHHHHHHHhhccccccCCCcchHHHHHH-HHHHHhcccHHHHHHHHHHH
Confidence 888999999999 99999999876642 1112 1222 22346788898888766543
No 60
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.73 E-value=5.2e-15 Score=130.00 Aligned_cols=273 Identities=10% Similarity=-0.001 Sum_probs=199.6
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHH-HHHHHHhccHHHHHHHHHHHh-cCCCCchhhH-HHHHHHHhcccHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRL-GLMFKVNNEYDSALKHLTLCL-IDASPCTFTK-LEGLMFKVNNEYDSALKHL 107 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~l-g~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~-~la~~~~~~~~~~~A~~~~ 107 (324)
++|.+...+ .|+....+.+++-+ +......|+++.|..++.++. .+|++..... ..+.++...|++++|+..+
T Consensus 101 ~~A~k~l~~----~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 101 QQVEKLMTR----NADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred HHHHHHHHH----HHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 555544443 34322233455555 555599999999999999999 8888865543 4589999999999999999
Q ss_pred HHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHH
Q psy8160 108 TLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAI 187 (324)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~ 187 (324)
+++....|.+. .++..++.+|...|++++|++.+.++.+....++. ...-+...+++.......+ ..+.+...
T Consensus 177 ~~~~~~~P~~~----~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~~a~~~l~~~~~~--~~~~~~l~ 249 (398)
T PRK10747 177 DKLLEVAPRHP----EVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQQAWIGLMDQAMA--DQGSEGLK 249 (398)
T ss_pred HHHHhcCCCCH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHHHHHHHHH--hcCHHHHH
Confidence 99999998887 88999999999999999999999998877632211 1111111121111000000 11334445
Q ss_pred HHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH--------
Q psy8160 188 HCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-------- 259 (324)
Q Consensus 188 ~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-------- 259 (324)
..++..-...|+++.+...++..+...|+.++|...++++++. |.++......+.+ ..++ ++++++..
T Consensus 250 ~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~-~~~al~~~e~~lk~~P 325 (398)
T PRK10747 250 RWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNN-PEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCC-hHHHHHHHHHHHhhCC
Confidence 5555555566789999999999999999999999999999994 5567665555554 3488 88888887
Q ss_pred ---HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhhc
Q psy8160 260 ---NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRDL 322 (324)
Q Consensus 260 ---~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 322 (324)
..+..+|.++...+++.+ |.++|+++++..|+++... .+..+ ....|+.++|...|++.
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~--A~~~le~al~~~P~~~~~~-~La~~-~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQE--ASLAFRAALKQRPDAYDYA-WLADA-LDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHH--HHHHHHHHHhcCCCHHHHH-HHHHH-HHHcCCHHHHHHHHHHH
Confidence 678899999999999999 9999999999999987633 23333 24568888888888753
No 61
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.73 E-value=1.3e-15 Score=124.60 Aligned_cols=184 Identities=10% Similarity=0.039 Sum_probs=145.8
Q ss_pred CCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCc---hhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCccc
Q psy8160 45 PSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPC---TFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFT 120 (324)
Q Consensus 45 p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 120 (324)
|..+...+.++.+|..+...|++++|+..|++++ .+|.+. .++..+|.++...|++++|+..|++++...|.+...
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 4445567899999999999999999999999999 888775 466889999999999999999999999998876532
Q ss_pred HHHHHHHHHHHHHHh--------hcHHHHHHHHHHHHhcCCCCCchhh-HHHHHHHHHHHhhhhhcccchhHHHHHHHHH
Q psy8160 121 KLEVRFHIAHLHEVQ--------RKYKTAKDSYEQLLKEDDLPVHLKA-DICRQLGWMYHCIDTLGEKSHRETLAIHCLQ 191 (324)
Q Consensus 121 ~~~~~~~la~~~~~~--------~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~ 191 (324)
..+++.+|.++... |++++|++.|++++..+ |++..+ .++..+++... .
T Consensus 107 -~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~--------------~----- 164 (235)
T TIGR03302 107 -DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRN--------------R----- 164 (235)
T ss_pred -HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHH--------------H-----
Confidence 34788999999876 89999999999999998 876431 12222222110 0
Q ss_pred HHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 192 KSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN---ADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 192 ~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.......+|.+++..|++.+|+..|++++...|++ +.+|+.+|.++...|+ +++|+.++
T Consensus 165 --------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~-~~~A~~~~ 226 (235)
T TIGR03302 165 --------LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL-KDLAQDAA 226 (235)
T ss_pred --------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 11223578888889999999999999998887654 5788899999999999 99888876
No 62
>KOG0548|consensus
Probab=99.71 E-value=1.2e-15 Score=130.37 Aligned_cols=225 Identities=11% Similarity=0.109 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcc---cHHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTF---TKLEVRFHI 128 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~---~~~~~~~~l 128 (324)
-.-.+|...+...+++.|++++..++ ++ .+.......+.++...|.+.+.+.....++........ ....+...+
T Consensus 226 ~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 226 KEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 35678999999999999999999999 88 88888888999999999999999988888765433221 112234446
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
|..+...++++.|+.+|.+++.....|+. ... ....++++.......-.+|.-..--..-|
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~-----ls~--------------lk~~Ek~~k~~e~~a~~~pe~A~e~r~kG 365 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDL-----LSK--------------LKEAEKALKEAERKAYINPEKAEEEREKG 365 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHH-----HHH--------------HHHHHHHHHHHHHHHhhChhHHHHHHHHH
Confidence 77888899999999999999876643322 111 12455555555555556665555555557
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCc
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTS 277 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~ 277 (324)
..++..|+|..|+..|.+++..+|+++.++.++|.||..++. +..|+... .+|+.-|.++..+.+|++
T Consensus 366 ne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~-~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydk 444 (539)
T KOG0548|consen 366 NEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGE-YPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDK 444 (539)
T ss_pred HHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777 77776654 666666777777777777
Q ss_pred chHHHHHHHhhhcCCChhhhhhc
Q psy8160 278 NNNRQCYNSYSTSIASCKHINNN 300 (324)
Q Consensus 278 ~~A~~~~~~al~~~p~~~~~~~~ 300 (324)
|++.|+++++++|++..+...
T Consensus 445 --Aleay~eale~dp~~~e~~~~ 465 (539)
T KOG0548|consen 445 --ALEAYQEALELDPSNAEAIDG 465 (539)
T ss_pred --HHHHHHHHHhcCchhHHHHHH
Confidence 777777777777776655443
No 63
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.70 E-value=1.1e-15 Score=114.39 Aligned_cols=127 Identities=16% Similarity=0.099 Sum_probs=113.9
Q ss_pred HHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhH
Q psy8160 104 LKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRE 183 (324)
Q Consensus 104 ~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 183 (324)
...+++++..+|. .++.+|..+...|++++|+..|++++..+ |.+ ..++..+|.++.. .|++
T Consensus 13 ~~~~~~al~~~p~-------~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~--~~a~~~lg~~~~~-------~g~~ 74 (144)
T PRK15359 13 EDILKQLLSVDPE-------TVYASGYASWQEGDYSRAVIDFSWLVMAQ--PWS--WRAHIALAGTWMM-------LKEY 74 (144)
T ss_pred HHHHHHHHHcCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCc--HHHHHHHHHHHHH-------HhhH
Confidence 4566777777654 35678999999999999999999999999 888 5599999999977 5599
Q ss_pred HHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhc
Q psy8160 184 TLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSN 248 (324)
Q Consensus 184 ~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 248 (324)
++|+..|++++.++|.++.+++.+|.++...|++++|+..|++++...|+++..|.++|.+....
T Consensus 75 ~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 75 TTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999886643
No 64
>KOG0495|consensus
Probab=99.70 E-value=3.7e-14 Score=123.91 Aligned_cols=249 Identities=14% Similarity=0.024 Sum_probs=166.8
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
+.-...+++++...|. +...+.-.+..+...||...|...+..++ -+|++...+...-.+.....+++.|...+.+
T Consensus 567 Esl~Allqkav~~~pk---ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llak 643 (913)
T KOG0495|consen 567 ESLEALLQKAVEQCPK---AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAK 643 (913)
T ss_pred HHHHHHHHHHHHhCCc---chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 4444455666666553 33345555566666666666776666666 6666666666655666666666666666666
Q ss_pred HHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHH
Q psy8160 110 CLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHC 189 (324)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~ 189 (324)
+....+.. .+|+.-+.+...+++.++|+..++++++.. |.... .|..+|.++.+ .++.+.|...
T Consensus 644 ar~~sgTe-----Rv~mKs~~~er~ld~~eeA~rllEe~lk~f--p~f~K--l~lmlGQi~e~-------~~~ie~aR~a 707 (913)
T KOG0495|consen 644 ARSISGTE-----RVWMKSANLERYLDNVEEALRLLEEALKSF--PDFHK--LWLMLGQIEEQ-------MENIEMAREA 707 (913)
T ss_pred HhccCCcc-----hhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--CchHH--HHHHHhHHHHH-------HHHHHHHHHH
Confidence 65433332 456666666666677777777777777766 66533 66777777655 2366667777
Q ss_pred HHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH----------
Q psy8160 190 LQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL---------- 259 (324)
Q Consensus 190 ~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~---------- 259 (324)
|...+...|.++..|..|+.+-...|+.-.|...+.++.-.+|+++..|...-..-.+.|. .++|....
T Consensus 708 Y~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn-~~~a~~lmakALQecp~s 786 (913)
T KOG0495|consen 708 YLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGN-KEQAELLMAKALQECPSS 786 (913)
T ss_pred HHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCcc
Confidence 7777777777777777777766666667777777777777777777766666666666666 55554333
Q ss_pred -------------------------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhch
Q psy8160 260 -------------------------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNK 301 (324)
Q Consensus 260 -------------------------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 301 (324)
.++..+|.++....+++. |.+.|.++++.+|++-.++..+
T Consensus 787 g~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~k--ar~Wf~Ravk~d~d~GD~wa~f 857 (913)
T KOG0495|consen 787 GLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEK--AREWFERAVKKDPDNGDAWAWF 857 (913)
T ss_pred chhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHH--HHHHHHHHHccCCccchHHHHH
Confidence 778889999999999999 9999999999999987665543
No 65
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.70 E-value=5e-15 Score=121.22 Aligned_cols=189 Identities=10% Similarity=-0.007 Sum_probs=146.9
Q ss_pred CCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh-
Q psy8160 81 ASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK- 159 (324)
Q Consensus 81 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~- 159 (324)
+.....+..+|..+...|++++|+..+++++...|.+.. ...+++.+|.++...|++++|+..|++++... |++..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~ 106 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY-AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDA 106 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCch
Confidence 344556677899999999999999999999998887642 23678999999999999999999999999998 76543
Q ss_pred hHHHHHHHHHHHhhh-hhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q psy8160 160 ADICRQLGWMYHCID-TLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTW 238 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~-~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 238 (324)
..+++.+|.++.... ......+++++|+..+++++..+|.+...+..+..+.... .. .....
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~----~~-------------~~~~~ 169 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR----NR-------------LAGKE 169 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH----HH-------------HHHHH
Confidence 347889999986520 0001135899999999999999999876654333221111 11 11234
Q ss_pred HHhHHHHhhcCCCHHHHHHHH--------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCC
Q psy8160 239 CSIGNKDFSNNSNREDYHQAL--------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIA 292 (324)
Q Consensus 239 ~~lg~~~~~~~~~~~~A~~~~--------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p 292 (324)
..+|.++...|+ +.+|+..| ++++.+|.++...|++++ |+.+++......|
T Consensus 170 ~~~a~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~--A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGA-YVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDL--AQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCC-hHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHH--HHHHHHHHHhhCC
Confidence 588999999999 99999988 688999999999999999 9999888776655
No 66
>KOG1840|consensus
Probab=99.69 E-value=1.4e-14 Score=127.57 Aligned_cols=221 Identities=15% Similarity=0.086 Sum_probs=175.3
Q ss_pred HHHHHHHHHHhccC--C---CcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-c--------CCCCchhhHHHHHHHHh
Q psy8160 31 IKAIKTFQQLLYVD--P---SYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-I--------DASPCTFTKLEGLMFKV 96 (324)
Q Consensus 31 ~~A~~~~~~~l~~~--p---~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~--------~~~~~~~~~~la~~~~~ 96 (324)
++|+..|.++++.- . +.+.-......+|.+|..++++.+|+..|++++ + +|.-+.+...||.+|..
T Consensus 216 e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~ 295 (508)
T KOG1840|consen 216 EKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYK 295 (508)
T ss_pred HHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999981 0 112223344569999999999999999999998 4 34555666779999999
Q ss_pred cccHHHHHHHHHHHHHhcCC----CcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC---CCCc-hhhHHHHHHHH
Q psy8160 97 NNEYDSALKHLTLCLIDASP----CTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDD---LPVH-LKADICRQLGW 168 (324)
Q Consensus 97 ~~~~~~A~~~~~~~l~~~~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~~~-~~~~~~~~l~~ 168 (324)
+|++++|..++++++..... +.......+..++.++...+++++|+.++++++++.. .+.+ ..+.+..++|+
T Consensus 296 ~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~ 375 (508)
T KOG1840|consen 296 QGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAE 375 (508)
T ss_pred cCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 99999999999999765332 2223445678889999999999999999999987631 1333 23779999999
Q ss_pred HHHhhhhhcccchhHHHHHHHHHHHhhhC--------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-------CCC
Q psy8160 169 MYHCIDTLGEKSHRETLAIHCLQKSIEAD--------PKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK-------SEG 233 (324)
Q Consensus 169 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-------~p~ 233 (324)
+|+. +|++++|.+.++++++.. +.....+..+|..|.+.+++.+|...|.++..+ .|+
T Consensus 376 l~~~-------~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~ 448 (508)
T KOG1840|consen 376 LYLK-------MGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPD 448 (508)
T ss_pred HHHH-------hcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCc
Confidence 9988 559999999999998764 223467788999999999999999999888764 344
Q ss_pred CHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 234 NADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 234 ~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
....+.+||.+|..+|+ +++|++..
T Consensus 449 ~~~~~~nL~~~Y~~~g~-~e~a~~~~ 473 (508)
T KOG1840|consen 449 VTYTYLNLAALYRAQGN-YEAAEELE 473 (508)
T ss_pred hHHHHHHHHHHHHHccc-HHHHHHHH
Confidence 45678899999999999 99998875
No 67
>KOG4162|consensus
Probab=99.67 E-value=1.6e-13 Score=122.05 Aligned_cols=282 Identities=15% Similarity=0.042 Sum_probs=217.4
Q ss_pred HHHHHHHHHHhccCC--CcccchHHHHHHHHHHHHh-----------ccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHh
Q psy8160 31 IKAIKTFQQLLYVDP--SYLRANEVHLRLGLMFKVN-----------NEYDSALKHLTLCL-IDASPCTFTKLEGLMFKV 96 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p--~~~~~~~~~~~lg~~~~~~-----------~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~ 96 (324)
++++.+-.++++.-. .....+.++.-+|.+|-.+ ..-.+++..+++++ .+|+|..+.+.++.-|..
T Consensus 411 eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~ 490 (799)
T KOG4162|consen 411 EEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAE 490 (799)
T ss_pred hhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 888888888887331 1122355788888888532 22457999999999 999999999999999999
Q ss_pred cccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh-----------------
Q psy8160 97 NNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK----------------- 159 (324)
Q Consensus 97 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----------------- 159 (324)
+++.+.|....++++..++... ..+|..++.++...+++..|+.....++... |.+..
T Consensus 491 ~R~l~sAl~~~~eaL~l~~~~~---~~~whLLALvlSa~kr~~~Al~vvd~al~E~--~~N~~l~~~~~~i~~~~~~~e~ 565 (799)
T KOG4162|consen 491 QRQLTSALDYAREALALNRGDS---AKAWHLLALVLSAQKRLKEALDVVDAALEEF--GDNHVLMDGKIHIELTFNDREE 565 (799)
T ss_pred HHhHHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh--hhhhhhchhhhhhhhhcccHHH
Confidence 9999999999999999866554 4789999999999999999999999998876 44211
Q ss_pred -hHHHHHHHHHHH----------h------hhhhcccchhHHHHHHHHHHHhhh--------C-----C--------cc-
Q psy8160 160 -ADICRQLGWMYH----------C------IDTLGEKSHRETLAIHCLQKSIEA--------D-----P--------KS- 200 (324)
Q Consensus 160 -~~~~~~l~~~~~----------~------~~~~~~~~~~~~~A~~~~~~al~~--------~-----~--------~~- 200 (324)
-+++..+-.++. + ....+....+..+|+...+++... . | ..
T Consensus 566 ~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~ 645 (799)
T KOG4162|consen 566 ALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSL 645 (799)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCch
Confidence 011111111111 0 000111122333444444444321 0 1 11
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhh
Q psy8160 201 ----GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-----------NKYRDL 265 (324)
Q Consensus 201 ----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~l 265 (324)
...|...|..+...++.++|..++.++-.++|..+..|+..|.++...|+ +.+|..+| .+...+
T Consensus 646 ~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~-~~EA~~af~~Al~ldP~hv~s~~Al 724 (799)
T KOG4162|consen 646 WYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQ-LEEAKEAFLVALALDPDHVPSMTAL 724 (799)
T ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHh-hHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 15678889999999999999999999999999999999999999999999 99999999 778899
Q ss_pred HHHHHHcCCCCcchHHH--HHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 266 GDFLVINNIPTSNNNRQ--CYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 266 g~~~~~~~~~~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
|.++.+.|+..- |.+ ....++++||.|+.+|..++.+. ..+|+.++|.++|.-
T Consensus 725 a~~lle~G~~~l--a~~~~~L~dalr~dp~n~eaW~~LG~v~-k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 725 AELLLELGSPRL--AEKRSLLSDALRLDPLNHEAWYYLGEVF-KKLGDSKQAAECFQA 779 (799)
T ss_pred HHHHHHhCCcch--HHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHccchHHHHHHHHH
Confidence 999999999888 777 99999999999999999999874 578999999999863
No 68
>KOG0550|consensus
Probab=99.67 E-value=2.5e-15 Score=124.53 Aligned_cols=255 Identities=12% Similarity=0.093 Sum_probs=205.6
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHL 131 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~ 131 (324)
-....|..++...+|..|++.+..|| ..|++...+...+.+++..|+|++|+-..++.+...+... ..+...+.|
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~----k~~~r~~~c 126 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFS----KGQLREGQC 126 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCcc----ccccchhhh
Confidence 45678888999999999999999999 9999999999999999999999999999999988877766 456677888
Q ss_pred HHHhhcHHHHHHHHHHHH---hcCC-------CCCchh----hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC
Q psy8160 132 HEVQRKYKTAKDSYEQLL---KEDD-------LPVHLK----ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD 197 (324)
Q Consensus 132 ~~~~~~~~~A~~~~~~al---~~~~-------~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 197 (324)
+...++..+|.+.++..- ..+. .|.+.+ ..+-..-+.|+.. .+++++|+..--..++++
T Consensus 127 ~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~-------~~~~~~a~~ea~~ilkld 199 (486)
T KOG0550|consen 127 HLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAF-------LGDYDEAQSEAIDILKLD 199 (486)
T ss_pred hhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhh-------cccchhHHHHHHHHHhcc
Confidence 888888888776655221 0000 011111 0122222333322 448999999999999999
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH------------HHHHHhHHHHhhcCCCHHHHHHHH------
Q psy8160 198 PKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA------------DTWCSIGNKDFSNNSNREDYHQAL------ 259 (324)
Q Consensus 198 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~------------~~~~~lg~~~~~~~~~~~~A~~~~------ 259 (324)
+.+.++++..|.++...++.+.|+..|++++.++|++. ..|..-|.-.++.|. +..|-++|
T Consensus 200 ~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~-y~~A~E~Yteal~i 278 (486)
T KOG0550|consen 200 ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGN-YRKAYECYTEALNI 278 (486)
T ss_pred cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccc-hhHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999984 457778999999999 99999999
Q ss_pred ---------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhhc
Q psy8160 260 ---------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRDL 322 (324)
Q Consensus 260 ---------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 322 (324)
..|.+.+.+....|+..+ |+.....|+++||+........+. +....+++.+|.+.|++.
T Consensus 279 dP~n~~~naklY~nra~v~~rLgrl~e--aisdc~~Al~iD~syikall~ra~-c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 279 DPSNKKTNAKLYGNRALVNIRLGRLRE--AISDCNEALKIDSSYIKALLRRAN-CHLALEKWEEAVEDYEKA 347 (486)
T ss_pred CccccchhHHHHHHhHhhhcccCCchh--hhhhhhhhhhcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 678999999999999999 999999999999987665544432 345678888888887653
No 69
>KOG1130|consensus
Probab=99.67 E-value=3.4e-16 Score=129.73 Aligned_cols=250 Identities=18% Similarity=0.129 Sum_probs=187.8
Q ss_pred HHHHHHHHHHhccCCCc-ccchHHHHHHHHHHHHhccHHHHHHHHHHHh-c------CCCCchhhHHHHHHHHhcccHHH
Q psy8160 31 IKAIKTFQQLLYVDPSY-LRANEVHLRLGLMFKVNNEYDSALKHLTLCL-I------DASPCTFTKLEGLMFKVNNEYDS 102 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~------~~~~~~~~~~la~~~~~~~~~~~ 102 (324)
...+..|+.+++.-.+. .--+.+|..||..|+..+||++|+++-..-+ + .-.-....-.+|+++...|.|++
T Consensus 34 raGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fde 113 (639)
T KOG1130|consen 34 RAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDE 113 (639)
T ss_pred hhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccch
Confidence 67888999999887642 2235589999999999999999999865433 2 22334445568999999999999
Q ss_pred HHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHHhhc--------------------HHHHHHHHHHHHhcCCCCCc--h
Q psy8160 103 ALKHLTLCLIDA--SPCTFTKLEVRFHIAHLHEVQRK--------------------YKTAKDSYEQLLKEDDLPVH--L 158 (324)
Q Consensus 103 A~~~~~~~l~~~--~~~~~~~~~~~~~la~~~~~~~~--------------------~~~A~~~~~~al~~~~~~~~--~ 158 (324)
|+.++.+-+... ..+......+++++|.+|...|+ ++.|++.|..-++......+ .
T Consensus 114 A~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~a 193 (639)
T KOG1130|consen 114 ALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLA 193 (639)
T ss_pred HHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHh
Confidence 999998876542 22333456789999999987764 33445555544443210111 0
Q ss_pred hhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH------HHHHHHHHHHHHcCCHHHHHHHHHHHHcc--
Q psy8160 159 KADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG------QSLYLLGRCFAAVGKVHDAFLAYRNSVEK-- 230 (324)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~lg~~~~~~~~~~~A~~~~~~al~~-- 230 (324)
...++-++|..|+. .|++++|+.+-+.-+.+..... .++.++|.++...|+++.|+++|.+.+.+
T Consensus 194 qGRa~GnLGNTyYl-------LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi 266 (639)
T KOG1130|consen 194 QGRAYGNLGNTYYL-------LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI 266 (639)
T ss_pred hcchhcccCceeee-------eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence 13366667777766 5699999999888777654332 68899999999999999999999987654
Q ss_pred --CCC--CHHHHHHhHHHHhhcCCCHHHHHHHH-----------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhh
Q psy8160 231 --SEG--NADTWCSIGNKDFSNNSNREDYHQAL-----------------NKYRDLGDFLVINNIPTSNNNRQCYNSYST 289 (324)
Q Consensus 231 --~p~--~~~~~~~lg~~~~~~~~~~~~A~~~~-----------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~ 289 (324)
... .+...+.||..|.-..+ +++||.++ .+++.||..|...|..++ |+.+.+++++
T Consensus 267 elg~r~vEAQscYSLgNtytll~e-~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~k--Al~fae~hl~ 343 (639)
T KOG1130|consen 267 ELGNRTVEAQSCYSLGNTYTLLKE-VQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRK--ALYFAELHLR 343 (639)
T ss_pred HhcchhHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHH--HHHHHHHHHH
Confidence 222 35567899999999999 99999998 788999999999999999 9999888876
Q ss_pred c
Q psy8160 290 S 290 (324)
Q Consensus 290 ~ 290 (324)
.
T Consensus 344 ~ 344 (639)
T KOG1130|consen 344 S 344 (639)
T ss_pred H
Confidence 4
No 70
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.67 E-value=8.4e-14 Score=121.20 Aligned_cols=245 Identities=13% Similarity=-0.023 Sum_probs=175.0
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
+.+...+.++....|......+..+-.|.++...|++++|...+++++ .+|++...... +..+...|++..+.....+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~ 101 (355)
T cd05804 23 PAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVAR 101 (355)
T ss_pred chHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHH
Confidence 777889999998888655556677888999999999999999999999 99999876664 5455555544444444444
Q ss_pred HHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHH
Q psy8160 110 CLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHC 189 (324)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~ 189 (324)
++....+...........+|.++...|++++|+..+++++..+ |++ ..++..+|.+++. .|++++|+.+
T Consensus 102 ~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~~--~~~~~~la~i~~~-------~g~~~eA~~~ 170 (355)
T cd05804 102 VLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PDD--AWAVHAVAHVLEM-------QGRFKEGIAF 170 (355)
T ss_pred HHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCC--cHHHHHHHHHHHH-------cCCHHHHHHH
Confidence 4433222223334667788999999999999999999999999 887 4488899999977 5599999999
Q ss_pred HHHHhhhCCccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH-HHHH----HhHHHHhhcCC-----CHHHH
Q psy8160 190 LQKSIEADPKSG----QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA-DTWC----SIGNKDFSNNS-----NREDY 255 (324)
Q Consensus 190 ~~~al~~~~~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~----~lg~~~~~~~~-----~~~~A 255 (324)
+++++...|.++ ..|..+|.++...|++++|+..|++++...|... .... .+...+...|. .++..
T Consensus 171 l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~ 250 (355)
T cd05804 171 MESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDL 250 (355)
T ss_pred HHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHH
Confidence 999999887543 3566899999999999999999999987766221 1111 11122222331 02222
Q ss_pred HHHH----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhh
Q psy8160 256 HQAL----------NKYRDLGDFLVINNIPTSNNNRQCYNSYST 289 (324)
Q Consensus 256 ~~~~----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~ 289 (324)
.... ......+.++...|+..+ |....+....
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--a~~~L~~l~~ 292 (355)
T cd05804 251 ADYAAWHFPDHGLAFNDLHAALALAGAGDKDA--LDKLLAALKG 292 (355)
T ss_pred HHHHHhhcCcccchHHHHHHHHHHhcCCCHHH--HHHHHHHHHH
Confidence 2211 111246666777888888 8888876654
No 71
>KOG1127|consensus
Probab=99.66 E-value=8.9e-15 Score=132.89 Aligned_cols=186 Identities=16% Similarity=0.136 Sum_probs=158.5
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
..|+..|-++++++|++. .++..||.+|...-|...|.++|++|. +||++..+....+.+|....+.+.|......
T Consensus 475 ~~al~ali~alrld~~~a---paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLA---PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHhcccchh---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 789999999999998753 378999999999999999999999999 9999999999999999999999999997544
Q ss_pred HHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHH
Q psy8160 110 CLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHC 189 (324)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~ 189 (324)
+-+..|.. .....|.++|-.|...+++..|+..|+.++..+ |.+.. .|..+|.+|.. .|++..|++.
T Consensus 552 ~~qka~a~--~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d--PkD~n--~W~gLGeAY~~-------sGry~~AlKv 618 (1238)
T KOG1127|consen 552 AAQKAPAF--ACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD--PKDYN--LWLGLGEAYPE-------SGRYSHALKV 618 (1238)
T ss_pred HhhhchHH--HHHhhhhhccccccCccchhhHHHHHHHHhcCC--chhHH--HHHHHHHHHHh-------cCceehHHHh
Confidence 43333322 233567778999999999999999999999999 98855 99999999966 4589999999
Q ss_pred HHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q psy8160 190 LQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSE 232 (324)
Q Consensus 190 ~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 232 (324)
|.++..++|.+....+-.+.+...+|+|.+|+..+...+....
T Consensus 619 F~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s 661 (1238)
T KOG1127|consen 619 FTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFS 661 (1238)
T ss_pred hhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 9999999999998888899999999999998888877775443
No 72
>KOG0495|consensus
Probab=99.66 E-value=3.4e-13 Score=117.98 Aligned_cols=247 Identities=11% Similarity=0.033 Sum_probs=215.8
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
+=|...|..+|+..|. ...+|...+..-...|..++-...|++++ .-|.....+...+..+...|+...|...+.+
T Consensus 533 ~carAVya~alqvfp~---k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~ 609 (913)
T KOG0495|consen 533 ECARAVYAHALQVFPC---KKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQ 609 (913)
T ss_pred HHHHHHHHHHHhhccc---hhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 5578889999999875 33478888888788899999999999999 8899888898889999999999999999999
Q ss_pred HHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHH
Q psy8160 110 CLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHC 189 (324)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~ 189 (324)
++..+|.+. ++|+.--.+.....+++.|...|.++-... |. ..+|+.-+.+... .++.++|+.+
T Consensus 610 af~~~pnse----eiwlaavKle~en~e~eraR~llakar~~s--gT---eRv~mKs~~~er~-------ld~~eeA~rl 673 (913)
T KOG0495|consen 610 AFEANPNSE----EIWLAAVKLEFENDELERARDLLAKARSIS--GT---ERVWMKSANLERY-------LDNVEEALRL 673 (913)
T ss_pred HHHhCCCcH----HHHHHHHHHhhccccHHHHHHHHHHHhccC--Cc---chhhHHHhHHHHH-------hhhHHHHHHH
Confidence 999988876 888888888889999999999999998776 44 3377777766665 4589999999
Q ss_pred HHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH----------
Q psy8160 190 LQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL---------- 259 (324)
Q Consensus 190 ~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~---------- 259 (324)
++++++..|.....|..+|+++..+++.+.|...|...++..|..+..|..++.+-...|+ ...|...+
T Consensus 674 lEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~-~~rAR~ildrarlkNPk~ 752 (913)
T KOG0495|consen 674 LEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQ-LVRARSILDRARLKNPKN 752 (913)
T ss_pred HHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcc-hhhHHHHHHHHHhcCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999988
Q ss_pred -HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhh
Q psy8160 260 -NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINN 299 (324)
Q Consensus 260 -~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 299 (324)
..|...-.+-.+.|+.+. |.....+|++--|++...+.
T Consensus 753 ~~lwle~Ir~ElR~gn~~~--a~~lmakALQecp~sg~LWa 791 (913)
T KOG0495|consen 753 ALLWLESIRMELRAGNKEQ--AELLMAKALQECPSSGLLWA 791 (913)
T ss_pred chhHHHHHHHHHHcCCHHH--HHHHHHHHHHhCCccchhHH
Confidence 667777777788899999 99999999999888765443
No 73
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.65 E-value=3.6e-14 Score=123.50 Aligned_cols=198 Identities=12% Similarity=0.076 Sum_probs=148.8
Q ss_pred CCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCc---hhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcc
Q psy8160 44 DPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPC---TFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTF 119 (324)
Q Consensus 44 ~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 119 (324)
+|++ ..+|..+|.++...++.+.+.+.+.++. ..|.+. ......+.++...|++++|...+++++...|.+.
T Consensus 2 dp~~---~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~- 77 (355)
T cd05804 2 DPDF---ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDL- 77 (355)
T ss_pred CCcc---HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-
Confidence 5654 5578999999999999999888888887 665443 3455568888899999999999999998887765
Q ss_pred cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC--CCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC
Q psy8160 120 TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED--DLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD 197 (324)
Q Consensus 120 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 197 (324)
.++.. +..+...|++..+.....+++... ..|.. ......+|.++.. .|++++|+..++++++..
T Consensus 78 ---~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~a~~~~~-------~G~~~~A~~~~~~al~~~ 144 (355)
T cd05804 78 ---LALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDY--WYLLGMLAFGLEE-------AGQYDRAEEAARRALELN 144 (355)
T ss_pred ---HHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCc--HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHhhC
Confidence 34443 545555554444444444444321 11433 3366677777765 458999999999999999
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH----HHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 198 PKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA----DTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 198 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
|+++.++..+|.++...|++++|+.++++++...|.++ ..|..+|.++...|+ +++|+..|
T Consensus 145 p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~-~~~A~~~~ 209 (355)
T cd05804 145 PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGD-YEAALAIY 209 (355)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCC-HHHHHHHH
Confidence 99999999999999999999999999999998877543 346678999999999 99998888
No 74
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.64 E-value=1.2e-14 Score=108.82 Aligned_cols=123 Identities=13% Similarity=0.105 Sum_probs=112.5
Q ss_pred HHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHH
Q psy8160 34 IKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLI 112 (324)
Q Consensus 34 ~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~ 112 (324)
...|+++++++|+. ++.+|.++...|++++|+.+|++++ .+|.+..++..+|.++...|++++|+..|++++.
T Consensus 13 ~~~~~~al~~~p~~------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLSVDPET------VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHcCHHH------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 46889999999862 5678999999999999999999999 9999999999999999999999999999999999
Q ss_pred hcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHH
Q psy8160 113 DASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMY 170 (324)
Q Consensus 113 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~ 170 (324)
..|... .+++++|.++...|++++|+..|++++... |++.. .+..+|.+.
T Consensus 87 l~p~~~----~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~--p~~~~--~~~~~~~~~ 136 (144)
T PRK15359 87 LDASHP----EPVYQTGVCLKMMGEPGLAREAFQTAIKMS--YADAS--WSEIRQNAQ 136 (144)
T ss_pred cCCCCc----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChH--HHHHHHHHH
Confidence 999887 899999999999999999999999999999 88844 666666655
No 75
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.62 E-value=1.6e-12 Score=125.35 Aligned_cols=238 Identities=9% Similarity=-0.060 Sum_probs=115.9
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCC-CCchhhHHHHHHHHhcccHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDA-SPCTFTKLEGLMFKVNNEYDSALKHLT 108 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~ 108 (324)
+.|.+.|.++.+.... .+...+..+-..|.+.|+++.|.+.|++.. ... .+...+..+...|...|++++|++.|+
T Consensus 454 e~A~~lf~~M~~~Gl~--pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~ 531 (1060)
T PLN03218 454 DGALRVLRLVQEAGLK--ADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531 (1060)
T ss_pred HHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 5566666655554322 123345555555666666666666666555 321 234444455555566666666666665
Q ss_pred HHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc-CC-CCCchhhHHHHHHHHHHHhhhhhcccchhHHHH
Q psy8160 109 LCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE-DD-LPVHLKADICRQLGWMYHCIDTLGEKSHRETLA 186 (324)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A 186 (324)
.......... ...+..+...+...|++++|.+.|.+.... .+ .|+ ..++..+...|.. .|++++|
T Consensus 532 ~M~~~Gv~PD---~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD---~vTynaLI~ay~k-------~G~ldeA 598 (1060)
T PLN03218 532 IMRSKNVKPD---RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD---HITVGALMKACAN-------AGQVDRA 598 (1060)
T ss_pred HHHHcCCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc---HHHHHHHHHHHHH-------CCCHHHH
Confidence 5543321111 234555555555555566666555555432 11 122 2244444444433 2255555
Q ss_pred HHHHHHHhhhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--CCCCHHHHHHhHHHHhhcCCCHHHHHHHH----
Q psy8160 187 IHCLQKSIEAD-PKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK--SEGNADTWCSIGNKDFSNNSNREDYHQAL---- 259 (324)
Q Consensus 187 ~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~A~~~~---- 259 (324)
...|++..+.. +.+...|..+...|...|++++|+..|.+.... .| +..+|..+...|.+.|+ +++|.+.+
T Consensus 599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~-~eeA~~l~~eM~ 676 (1060)
T PLN03218 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGD-LDKAFEILQDAR 676 (1060)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCC-HHHHHHHHHHHH
Confidence 55555554443 233444555555555555555555555554433 22 23344444555555555 55555444
Q ss_pred --------HHHHhhHHHHHHcCCCCcchHHHHHHHh
Q psy8160 260 --------NKYRDLGDFLVINNIPTSNNNRQCYNSY 287 (324)
Q Consensus 260 --------~~~~~lg~~~~~~~~~~~~~A~~~~~~a 287 (324)
.+|..+...|.+.|++++ |.+.|++.
T Consensus 677 k~G~~pd~~tynsLI~ay~k~G~~ee--A~~lf~eM 710 (1060)
T PLN03218 677 KQGIKLGTVSYSSLMGACSNAKNWKK--ALELYEDI 710 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHH--HHHHHHHH
Confidence 344445555555555555 55555544
No 76
>KOG1174|consensus
Probab=99.62 E-value=3.8e-13 Score=111.81 Aligned_cols=246 Identities=12% Similarity=0.073 Sum_probs=153.0
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Q psy8160 55 LRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHE 133 (324)
Q Consensus 55 ~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~ 133 (324)
...+.|+-...-+..+..++-.-. .-|+|......+|.++...|++++|+-.|+++...+|... ...-..|.++.
T Consensus 202 ka~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i----~~MD~Ya~LL~ 277 (564)
T KOG1174|consen 202 KALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNV----EAMDLYAVLLG 277 (564)
T ss_pred HHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhh----hhHHHHHHHHH
Confidence 445666665666666677776666 7789999999999999999999999999999987777654 33333444455
Q ss_pred HhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHH
Q psy8160 134 VQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAA 213 (324)
Q Consensus 134 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 213 (324)
..|+++.--......+... ... +.-|+--+.+.+. .+++..|+.+-+++++.+|.+..++...|..+..
T Consensus 278 ~eg~~e~~~~L~~~Lf~~~--~~t--a~~wfV~~~~l~~-------~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 278 QEGGCEQDSALMDYLFAKV--KYT--ASHWFVHAQLLYD-------EKKFERALNFVEKCIDSEPRNHEALILKGRLLIA 346 (564)
T ss_pred hccCHhhHHHHHHHHHhhh--hcc--hhhhhhhhhhhhh-------hhhHHHHHHHHHHHhccCcccchHHHhccHHHHh
Confidence 5555554444444443333 111 2233333333322 2256666666666666666666666666666666
Q ss_pred cCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHH------------------------------------
Q psy8160 214 VGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQ------------------------------------ 257 (324)
Q Consensus 214 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~------------------------------------ 257 (324)
+|+.++|+..|+.|..+.|..-+.|-.|-.+|...|. +.+|.-
T Consensus 347 ~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~-~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKR-FKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhch-HHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHH
Confidence 6666666666666666666666666666666666666 655543
Q ss_pred HH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHh
Q psy8160 258 AL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYR 320 (324)
Q Consensus 258 ~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 320 (324)
.+ .+-..++.+....|.+.+ ++..+++++...|++. .+..|+... ...+.+.+|++.|.
T Consensus 426 f~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D--~i~LLe~~L~~~~D~~-LH~~Lgd~~-~A~Ne~Q~am~~y~ 495 (564)
T KOG1174|consen 426 FAEKSLKINPIYTPAVNLIAELCQVEGPTKD--IIKLLEKHLIIFPDVN-LHNHLGDIM-RAQNEPQKAMEYYY 495 (564)
T ss_pred HHHhhhccCCccHHHHHHHHHHHHhhCccch--HHHHHHHHHhhccccH-HHHHHHHHH-HHhhhHHHHHHHHH
Confidence 22 444567777777888888 8888888888777643 444455432 34566777776664
No 77
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.61 E-value=1.6e-13 Score=108.30 Aligned_cols=156 Identities=12% Similarity=0.087 Sum_probs=128.0
Q ss_pred HHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhc
Q psy8160 58 GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRK 137 (324)
Q Consensus 58 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~ 137 (324)
+..|+..|+++......++.. +|.. -+...++.++++..+++++..+|.+. +.|..+|.++...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~-~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~----~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLA-DPLH---------QFASQQTPEAQLQALQDKIRANPQNS----EQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHh-Cccc---------cccCchhHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHCCC
Confidence 346778888887655554322 2221 11125678899999999999999887 899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHH-Hhhhhhcccchh--HHHHHHHHHHHhhhCCccHHHHHHHHHHHHHc
Q psy8160 138 YKTAKDSYEQLLKEDDLPVHLKADICRQLGWMY-HCIDTLGEKSHR--ETLAIHCLQKSIEADPKSGQSLYLLGRCFAAV 214 (324)
Q Consensus 138 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 214 (324)
+++|+.+|++++..+ |++ +.++..+|.++ .. .|+ +++|...++++++.+|+++.+++.+|.+++..
T Consensus 89 ~~~A~~a~~~Al~l~--P~~--~~~~~~lA~aL~~~-------~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~ 157 (198)
T PRK10370 89 YDNALLAYRQALQLR--GEN--AELYAALATVLYYQ-------AGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQ 157 (198)
T ss_pred HHHHHHHHHHHHHhC--CCC--HHHHHHHHHHHHHh-------cCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHc
Confidence 999999999999999 888 55999999875 33 224 68999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHccCCCCHHHH
Q psy8160 215 GKVHDAFLAYRNSVEKSEGNADTW 238 (324)
Q Consensus 215 ~~~~~A~~~~~~al~~~p~~~~~~ 238 (324)
|++++|+..|+++++..|.+.+-.
T Consensus 158 g~~~~Ai~~~~~aL~l~~~~~~r~ 181 (198)
T PRK10370 158 ADYAQAIELWQKVLDLNSPRVNRT 181 (198)
T ss_pred CCHHHHHHHHHHHHhhCCCCccHH
Confidence 999999999999999998765443
No 78
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.60 E-value=6.6e-12 Score=121.14 Aligned_cols=267 Identities=13% Similarity=0.054 Sum_probs=208.1
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cC-CCCchhhHHHHHHHHhcccHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-ID-ASPCTFTKLEGLMFKVNNEYDSALKHLT 108 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 108 (324)
++|...|..... |+ ...+..+-..+...|+++.|...|..+. .. +.+...+..+-..|...|+.++|.+.|+
T Consensus 423 ~eAl~lf~~M~~--pd----~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~ 496 (1060)
T PLN03218 423 KEAFRFAKLIRN--PT----LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFH 496 (1060)
T ss_pred HHHHHHHHHcCC--CC----HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 667776665543 32 3456677778889999999999999988 44 3345667778889999999999999999
Q ss_pred HHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHH
Q psy8160 109 LCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIH 188 (324)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~ 188 (324)
+......... ...|..+...|...|++++|+..|+......-.|+ ..++..+...+.+ .++.++|..
T Consensus 497 eM~~~Gv~Pd---vvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD---~vTYnsLI~a~~k-------~G~~deA~~ 563 (1060)
T PLN03218 497 EMVNAGVEAN---VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD---RVVFNALISACGQ-------SGAVDRAFD 563 (1060)
T ss_pred HHHHcCCCCC---HHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHH-------CCCHHHHHH
Confidence 9876543221 36788888999999999999999999877654455 3478888777765 458999999
Q ss_pred HHHHHhhh----CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-CCCHHHHHHhHHHHhhcCCCHHHHHHHH----
Q psy8160 189 CLQKSIEA----DPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKS-EGNADTWCSIGNKDFSNNSNREDYHQAL---- 259 (324)
Q Consensus 189 ~~~~al~~----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~A~~~~---- 259 (324)
.+.+.... .| +...|..+-..|...|++++|++.|+...+.+ +.++..|..+...|.+.|+ +++|+..|
T Consensus 564 lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~-~deAl~lf~eM~ 641 (1060)
T PLN03218 564 VLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD-WDFALSIYDDMK 641 (1060)
T ss_pred HHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Confidence 99998753 44 45678888889999999999999999998876 4578899999999999999 99999999
Q ss_pred --------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcC--CChhhhhhchhhhccCChhhHHHHHHHHhhc
Q psy8160 260 --------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSI--ASCKHINNNKDFSNNSNREDYHQALNKYRDL 322 (324)
Q Consensus 260 --------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 322 (324)
.+|..+...|.+.|++++ |.+.+....+.. |+ ....+.+-.. ....+++++|+.-|+++
T Consensus 642 ~~Gv~PD~~TynsLI~a~~k~G~~ee--A~~l~~eM~k~G~~pd-~~tynsLI~a-y~k~G~~eeA~~lf~eM 710 (1060)
T PLN03218 642 KKGVKPDEVFFSALVDVAGHAGDLDK--AFEILQDARKQGIKLG-TVSYSSLMGA-CSNAKNWKKALELYEDI 710 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHH--HHHHHHHHHHcCCCCC-HHHHHHHHHH-HHhCCCHHHHHHHHHHH
Confidence 578889999999999999 999999998753 43 3333333222 24567777777777654
No 79
>KOG0548|consensus
Probab=99.60 E-value=5.1e-13 Score=114.54 Aligned_cols=201 Identities=13% Similarity=0.153 Sum_probs=116.7
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCch-------hhHHHHHHHHhcccHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCT-------FTKLEGLMFKVNNEYDS 102 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~-------~~~~la~~~~~~~~~~~ 102 (324)
..|++.|.+++.++ . +...+...+-+|+..|.+...+.....++ ....... ....+|..+...++++.
T Consensus 241 ~~a~q~y~~a~el~-~---~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ 316 (539)
T KOG0548|consen 241 ETAIQHYAKALELA-T---DITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEG 316 (539)
T ss_pred HHHHHHHHHHHhHh-h---hhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHH
Confidence 88999999999999 3 34457778888888888888887777766 3211111 11125668888899999
Q ss_pred HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchh
Q psy8160 103 ALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHR 182 (324)
Q Consensus 103 A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 182 (324)
++..|++++..... ..+.......++++.......-.+ |.- +.-....|..++. .++
T Consensus 317 ai~~~~kaLte~Rt------------~~~ls~lk~~Ek~~k~~e~~a~~~--pe~--A~e~r~kGne~Fk-------~gd 373 (539)
T KOG0548|consen 317 AIKYYQKALTEHRT------------PDLLSKLKEAEKALKEAERKAYIN--PEK--AEEEREKGNEAFK-------KGD 373 (539)
T ss_pred HHHHHHHHhhhhcC------------HHHHHHHHHHHHHHHHHHHHHhhC--hhH--HHHHHHHHHHHHh-------ccC
Confidence 99999998754222 233333444444444444333333 322 2233333444433 335
Q ss_pred HHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 183 ETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 183 ~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
|..|+..|.+++..+|+++..|.+.|.||...|.+..|+...+++++++|+....|.+-|.++..+.+ |++|+++|
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~-ydkAleay 449 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKE-YDKALEAY 449 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555 55555555
No 80
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.59 E-value=1.8e-12 Score=122.55 Aligned_cols=265 Identities=9% Similarity=-0.038 Sum_probs=203.1
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cC-CCCchhhHHHHHHHHhcccHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-ID-ASPCTFTKLEGLMFKVNNEYDSALKHLT 108 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~ 108 (324)
++|.+.|+..... +...|..+...|...|++++|++.|++.. .. .-+...+..+...+...|++++|.+.+.
T Consensus 276 ~~A~~vf~~m~~~------~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~ 349 (697)
T PLN03081 276 EDARCVFDGMPEK------TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349 (697)
T ss_pred HHHHHHHHhCCCC------ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 8888888776322 34478888889999999999999998887 32 2234456667778888899999999998
Q ss_pred HHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHH
Q psy8160 109 LCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIH 188 (324)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~ 188 (324)
.++....... ..++..+...|...|+.++|...|++....+ ..+|..+...|.. .|+.++|+.
T Consensus 350 ~m~~~g~~~d---~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d-------~~t~n~lI~~y~~-------~G~~~~A~~ 412 (697)
T PLN03081 350 GLIRTGFPLD---IVANTALVDLYSKWGRMEDARNVFDRMPRKN-------LISWNALIAGYGN-------HGRGTKAVE 412 (697)
T ss_pred HHHHhCCCCC---eeehHHHHHHHHHCCCHHHHHHHHHhCCCCC-------eeeHHHHHHHHHH-------cCCHHHHHH
Confidence 8887643222 2467778888999999999999998865322 3378888877765 458999999
Q ss_pred HHHHHhhhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--CHHHHHHhHHHHhhcCCCHHHHHHHH------
Q psy8160 189 CLQKSIEAD-PKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG--NADTWCSIGNKDFSNNSNREDYHQAL------ 259 (324)
Q Consensus 189 ~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~~A~~~~------ 259 (324)
.|++..+.. ..+..++..+-..+...|..++|...|+...+..+- +...|..+..++.+.|+ +++|.+.+
T Consensus 413 lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~-~~eA~~~~~~~~~~ 491 (697)
T PLN03081 413 MFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL-LDEAYAMIRRAPFK 491 (697)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC-HHHHHHHHHHCCCC
Confidence 999987643 224566777778889999999999999998754322 34578889999999999 99999998
Q ss_pred ---HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhhc
Q psy8160 260 ---NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRDL 322 (324)
Q Consensus 260 ---~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 322 (324)
.+|..|...+...|+.+. |...+++.+++.|++......+... ....|++++|.+-++.|
T Consensus 492 p~~~~~~~Ll~a~~~~g~~~~--a~~~~~~l~~~~p~~~~~y~~L~~~-y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 492 PTVNMWAALLTACRIHKNLEL--GRLAAEKLYGMGPEKLNNYVVLLNL-YNSSGRQAEAAKVVETL 554 (697)
T ss_pred CCHHHHHHHHHHHHHcCCcHH--HHHHHHHHhCCCCCCCcchHHHHHH-HHhCCCHHHHHHHHHHH
Confidence 779999999999999999 9999999999999877655544432 24557788777766654
No 81
>KOG1156|consensus
Probab=99.59 E-value=7.5e-13 Score=115.76 Aligned_cols=232 Identities=13% Similarity=0.092 Sum_probs=199.7
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHL 131 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~ 131 (324)
.+|.-+.-.+..++|.+.++..+.++ ..|..+...-..|..+...|+-++|......++..++.+. ..|..+|.+
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~----vCwHv~gl~ 84 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSH----VCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccc----hhHHHHHHH
Confidence 56777777788999999999999999 9999999999999999999999999999999998777766 678899999
Q ss_pred HHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHH
Q psy8160 132 HEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCF 211 (324)
Q Consensus 132 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~ 211 (324)
+...++|++|+.+|+.|+.+. |++.. +++-++.+..+ +++++-....-.+.+++.|.....|...+..+
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~~--~dN~q--ilrDlslLQ~Q-------mRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~ 153 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKIE--KDNLQ--ILRDLSLLQIQ-------MRDYEGYLETRNQLLQLRPSQRASWIGFAVAQ 153 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhcC--CCcHH--HHHHHHHHHHH-------HHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 999999999999999999999 98855 99999988866 44888899999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHccC---CCC-----HHHHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHc
Q psy8160 212 AAVGKVHDAFLAYRNSVEKS---EGN-----ADTWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVIN 272 (324)
Q Consensus 212 ~~~~~~~~A~~~~~~al~~~---p~~-----~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~ 272 (324)
...|++..|....+...+.. |.. .+.......+....|. +++|++.+ ..-..-|.++.+.
T Consensus 154 ~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~-~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl 232 (700)
T KOG1156|consen 154 HLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGS-LQKALEHLLDNEKQIVDKLAFEETKADLLMKL 232 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHccc-HHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHH
Confidence 99999999998887776654 322 3445556677788899 99999988 3345678899999
Q ss_pred CCCCcchHHHHHHHhhhcCCChhhhhhchh
Q psy8160 273 NIPTSNNNRQCYNSYSTSIASCKHINNNKD 302 (324)
Q Consensus 273 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 302 (324)
+++++ |+..|...+..+|++......+.
T Consensus 233 ~~lEe--A~~~y~~Ll~rnPdn~~Yy~~l~ 260 (700)
T KOG1156|consen 233 GQLEE--AVKVYRRLLERNPDNLDYYEGLE 260 (700)
T ss_pred hhHHh--HHHHHHHHHhhCchhHHHHHHHH
Confidence 99999 99999999999999876555443
No 82
>KOG1127|consensus
Probab=99.59 E-value=1.5e-13 Score=125.03 Aligned_cols=212 Identities=15% Similarity=0.110 Sum_probs=182.4
Q ss_pred HhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHH
Q psy8160 63 VNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTA 141 (324)
Q Consensus 63 ~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 141 (324)
.+.+...|+..|-+++ +||+...++-.+|.+|+..-+...|.++|++++..++... ++.-.++..|....+++.|
T Consensus 470 ~rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatda----eaaaa~adtyae~~~we~a 545 (1238)
T KOG1127|consen 470 MRKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDA----EAAAASADTYAEESTWEEA 545 (1238)
T ss_pred hhhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhh----hhHHHHHHHhhccccHHHH
Confidence 3456889999999999 9999999999999999999999999999999998887765 7788899999999999999
Q ss_pred HHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHH
Q psy8160 142 KDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAF 221 (324)
Q Consensus 142 ~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~ 221 (324)
..+...+-+.. |-......|.++|-.|.. .++..+|+..|+.+++.+|.+.+.|..+|.+|...|++..|+
T Consensus 546 ~~I~l~~~qka--~a~~~k~nW~~rG~yyLe-------a~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~Al 616 (1238)
T KOG1127|consen 546 FEICLRAAQKA--PAFACKENWVQRGPYYLE-------AHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHAL 616 (1238)
T ss_pred HHHHHHHhhhc--hHHHHHhhhhhccccccC-------ccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHH
Confidence 99866666666 544334577778877765 458889999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH------------------HHHHhhHHHHHHcCCCCcchHHHH
Q psy8160 222 LAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL------------------NKYRDLGDFLVINNIPTSNNNRQC 283 (324)
Q Consensus 222 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~------------------~~~~~lg~~~~~~~~~~~~~A~~~ 283 (324)
+.|.+|..++|.+.-..+-.+......|. |.+|+..+ +++...+..+...|-... |.++
T Consensus 617 KvF~kAs~LrP~s~y~~fk~A~~ecd~Gk-Ykeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~k--avd~ 693 (1238)
T KOG1127|consen 617 KVFTKASLLRPLSKYGRFKEAVMECDNGK-YKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKK--AVDF 693 (1238)
T ss_pred HhhhhhHhcCcHhHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhh--hhHH
Confidence 99999999999999999999999999999 99999988 455555555666666677 7777
Q ss_pred HHHhhhc
Q psy8160 284 YNSYSTS 290 (324)
Q Consensus 284 ~~~al~~ 290 (324)
++++++.
T Consensus 694 ~eksie~ 700 (1238)
T KOG1127|consen 694 FEKSIES 700 (1238)
T ss_pred HHHHHHH
Confidence 7776654
No 83
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.58 E-value=2.7e-12 Score=114.38 Aligned_cols=249 Identities=9% Similarity=-0.013 Sum_probs=185.1
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcc-----cHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNN-----EYDSAL 104 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~-----~~~~A~ 104 (324)
++|++.+...-..-++ ...+.-..|.++..+|++++|...|+..| .+|++...+..+..+..... +.+.-.
T Consensus 21 ~~AL~~L~~~~~~I~D---k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~ 97 (517)
T PF12569_consen 21 EEALEHLEKNEKQILD---KLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLL 97 (517)
T ss_pred HHHHHHHHhhhhhCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHH
Confidence 8899998887766655 34577889999999999999999999999 99999999998887774332 567778
Q ss_pred HHHHHHHHhcCCCcccH--------HH--------------------HHHHHHHHHHHhhcHHHHHHHHHHHHh---cCC
Q psy8160 105 KHLTLCLIDASPCTFTK--------LE--------------------VRFHIAHLHEVQRKYKTAKDSYEQLLK---EDD 153 (324)
Q Consensus 105 ~~~~~~l~~~~~~~~~~--------~~--------------------~~~~la~~~~~~~~~~~A~~~~~~al~---~~~ 153 (324)
..|++.....|.+...+ .+ ++..+-.+|.......-..+.+..... ..+
T Consensus 98 ~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~ 177 (517)
T PF12569_consen 98 ELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNG 177 (517)
T ss_pred HHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccC
Confidence 88888777666543211 11 122222222211111111112222111 110
Q ss_pred ----------CCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHH
Q psy8160 154 ----------LPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLA 223 (324)
Q Consensus 154 ----------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~ 223 (324)
.|+.....+++.++..|.. .|++++|+.+.+++|+..|..++.++..|.++-..|++.+|..+
T Consensus 178 ~~~~~~~~~~~~p~~~lw~~~~lAqhyd~-------~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~ 250 (517)
T PF12569_consen 178 SFSNGDDEEKEPPSTLLWTLYFLAQHYDY-------LGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEA 250 (517)
T ss_pred CCCCccccccCCchHHHHHHHHHHHHHHH-------hCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 0111112355777777744 45999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH------------------HHHH--hhHHHHHHcCCCCcchHHHH
Q psy8160 224 YRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL------------------NKYR--DLGDFLVINNIPTSNNNRQC 283 (324)
Q Consensus 224 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~------------------~~~~--~lg~~~~~~~~~~~~~A~~~ 283 (324)
++.|..+|+.+--.....+..+.+.|+ .++|.+.+ -+|+ ..|.+|.+.|++.. |++.
T Consensus 251 ~~~Ar~LD~~DRyiNsK~aKy~LRa~~-~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~--ALk~ 327 (517)
T PF12569_consen 251 MDEARELDLADRYINSKCAKYLLRAGR-IEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL--ALKR 327 (517)
T ss_pred HHHHHhCChhhHHHHHHHHHHHHHCCC-HHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH--HHHH
Confidence 999999999998888899999999999 99999887 4665 45889999999999 9999
Q ss_pred HHHhhhcCC
Q psy8160 284 YNSYSTSIA 292 (324)
Q Consensus 284 ~~~al~~~p 292 (324)
|..+.+..-
T Consensus 328 ~~~v~k~f~ 336 (517)
T PF12569_consen 328 FHAVLKHFD 336 (517)
T ss_pred HHHHHHHHH
Confidence 998887643
No 84
>KOG3060|consensus
Probab=99.56 E-value=4.2e-12 Score=99.24 Aligned_cols=204 Identities=14% Similarity=0.064 Sum_probs=164.5
Q ss_pred HHHHHHHHHHhccCCCcccc---hHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRA---NEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKH 106 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~ 106 (324)
++-++.+..++.-.+...-. ..++-.+.......|+.+-|..|+++.. .-|...+...+.|..+...|.+++|++.
T Consensus 29 eevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~ 108 (289)
T KOG3060|consen 29 EEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEY 108 (289)
T ss_pred HHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHH
Confidence 66666666666554432111 2244455666678899999999999988 7799999999999999999999999999
Q ss_pred HHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHH
Q psy8160 107 LTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLA 186 (324)
Q Consensus 107 ~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A 186 (324)
|+..+..+|.+. .++-.---+...+|+..+|++.+...++.. +.+ .++|..++.+|.. .+++++|
T Consensus 109 y~~lL~ddpt~~----v~~KRKlAilka~GK~l~aIk~ln~YL~~F--~~D--~EAW~eLaeiY~~-------~~~f~kA 173 (289)
T KOG3060|consen 109 YESLLEDDPTDT----VIRKRKLAILKAQGKNLEAIKELNEYLDKF--MND--QEAWHELAEIYLS-------EGDFEKA 173 (289)
T ss_pred HHHHhccCcchh----HHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--cCc--HHHHHHHHHHHHh-------HhHHHHH
Confidence 999999887776 344444455677888889999999999999 888 5599999999977 5599999
Q ss_pred HHHHHHHhhhCCccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcC
Q psy8160 187 IHCLQKSIEADPKSGQSLYLLGRCFAAVG---KVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNN 249 (324)
Q Consensus 187 ~~~~~~al~~~~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 249 (324)
..|+++.+=..|.++.....+|.+++-+| +...|.++|.++++++|.+..+|+.+-.|....-
T Consensus 174 ~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 174 AFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALA 239 (289)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHH
Confidence 99999999999999998888998888776 5667999999999999999888888766654433
No 85
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.55 E-value=9.8e-14 Score=109.47 Aligned_cols=111 Identities=14% Similarity=0.215 Sum_probs=104.4
Q ss_pred hHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHH-hhcCCCH--HHHHHH
Q psy8160 182 RETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD-FSNNSNR--EDYHQA 258 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~~~~~--~~A~~~ 258 (324)
+.++++..++++++.+|++++.|..+|.++...|++++|+..|++++.++|++++++..+|.++ ...|+ + ++|+..
T Consensus 54 ~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~-~~~~~A~~~ 132 (198)
T PRK10370 54 TPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQ-HMTPQTREM 132 (198)
T ss_pred hHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-CCcHHHHHH
Confidence 7788999999999999999999999999999999999999999999999999999999999975 67676 5 899988
Q ss_pred H-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChh
Q psy8160 259 L-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCK 295 (324)
Q Consensus 259 ~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (324)
+ .+++.+|..+...|++++ |+.+|+++++++|.+.
T Consensus 133 l~~al~~dP~~~~al~~LA~~~~~~g~~~~--Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 133 IDKALALDANEVTALMLLASDAFMQADYAQ--AIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCCHHH--HHHHHHHHHhhCCCCc
Confidence 8 899999999999999999 9999999999998754
No 86
>KOG0553|consensus
Probab=99.54 E-value=4.9e-14 Score=112.86 Aligned_cols=113 Identities=12% Similarity=0.120 Sum_probs=97.7
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWC 239 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 239 (324)
++.+..-|.-... .++|.+|+..|.+||+++|.++-.|++.+.+|..+|.++.|++.++.++.+||.+..+|.
T Consensus 81 AE~LK~eGN~~m~-------~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~ 153 (304)
T KOG0553|consen 81 AESLKNEGNKLMK-------NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYG 153 (304)
T ss_pred HHHHHHHHHHHHH-------hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHH
Confidence 4445555555544 559999999999999999999999999999999999999999999999999999998888
Q ss_pred HhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhc
Q psy8160 240 SIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSN 305 (324)
Q Consensus 240 ~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 305 (324)
.||.+|..+|+ +++ |++.|++||+++|+|+..+.+|....
T Consensus 154 RLG~A~~~~gk------------------------~~~--A~~aykKaLeldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 154 RLGLAYLALGK------------------------YEE--AIEAYKKALELDPDNESYKSNLKIAE 193 (304)
T ss_pred HHHHHHHccCc------------------------HHH--HHHHHHhhhccCCCcHHHHHHHHHHH
Confidence 88888888777 666 88889999999999999998887653
No 87
>KOG3060|consensus
Probab=99.54 E-value=2.2e-12 Score=100.79 Aligned_cols=174 Identities=15% Similarity=0.062 Sum_probs=141.1
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWM 169 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~ 169 (324)
........|+.+-|..++++.-+..|.+. .+-..-|..+...|++++|+++|+..++.+ |.+.- ++.+.--+
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~----RV~~lkam~lEa~~~~~~A~e~y~~lL~dd--pt~~v--~~KRKlAi 129 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSK----RVGKLKAMLLEATGNYKEAIEYYESLLEDD--PTDTV--IRKRKLAI 129 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCCh----hHHHHHHHHHHHhhchhhHHHHHHHHhccC--cchhH--HHHHHHHH
Confidence 44455567899999999999888887776 566677899999999999999999999999 87632 44333223
Q ss_pred HHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcC
Q psy8160 170 YHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNN 249 (324)
Q Consensus 170 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 249 (324)
... +|+.-+||+.+..-++..+.++++|..++.+|+..|+|++|.-++++++-+.|.++..+-.+|.+++-.|
T Consensus 130 lka-------~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~g 202 (289)
T KOG3060|consen 130 LKA-------QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQG 202 (289)
T ss_pred HHH-------cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh
Confidence 322 3467789999999999999999999999999999999999999999999999999999999999988887
Q ss_pred CCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhch
Q psy8160 250 SNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNK 301 (324)
Q Consensus 250 ~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 301 (324)
. - .+..- |.++|.++++++|.+-.....+
T Consensus 203 g-~--------------------eN~~~--arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 203 G-A--------------------ENLEL--ARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred h-H--------------------HHHHH--HHHHHHHHHHhChHhHHHHHHH
Confidence 7 2 23556 8888888888888655544443
No 88
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.53 E-value=1.8e-12 Score=119.72 Aligned_cols=125 Identities=6% Similarity=0.021 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHH
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQ 202 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 202 (324)
++++.||.+....|.+++|...++.+++.. |++.. +...++.+..+ .+++++|+..+++++..+|+++.
T Consensus 87 ~~~~~La~i~~~~g~~~ea~~~l~~~~~~~--Pd~~~--a~~~~a~~L~~-------~~~~eeA~~~~~~~l~~~p~~~~ 155 (694)
T PRK15179 87 LFQVLVARALEAAHRSDEGLAVWRGIHQRF--PDSSE--AFILMLRGVKR-------QQGIEAGRAEIELYFSGGSSSAR 155 (694)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhC--CCcHH--HHHHHHHHHHH-------hccHHHHHHHHHHHhhcCCCCHH
Confidence 566666666666666666666666666666 66533 55555555544 33666666666666666666666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 203 SLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 203 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
+++.+|.++...|++++|+..|++++..+|+++.+|.++|.++...|+ .++|...|
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~-~~~A~~~~ 211 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA-LWRARDVL 211 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 666666666666666666666666666666666666666666666666 55544444
No 89
>KOG1156|consensus
Probab=99.52 E-value=2.8e-11 Score=106.08 Aligned_cols=130 Identities=21% Similarity=0.184 Sum_probs=109.2
Q ss_pred cccchhhhHhHHHHH-----HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHH
Q psy8160 16 SVRVPKLQQFGKTLN-----IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKL 89 (324)
Q Consensus 16 ~~~~~~l~~~~~~~~-----~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~ 89 (324)
|+....|+.-++.++ ++|.+.....++.++. ..-.|.-+|.++....+|++|+++|+.|+ ++|+|...+.-
T Consensus 38 ~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~---S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrD 114 (700)
T KOG1156|consen 38 PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK---SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRD 114 (700)
T ss_pred CccchhHHhccchhhcccchHHHHHHHHHHhccCcc---cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 334444455444444 9999999999998865 34478999999999999999999999999 99999999999
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 152 (324)
++.+-.+.++++.....-.+.+...|... ..|...+..+...|++..|....+......
T Consensus 115 lslLQ~QmRd~~~~~~tr~~LLql~~~~r----a~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 115 LSLLQIQMRDYEGYLETRNQLLQLRPSQR----ASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999888998887765 678999999999999999998877766544
No 90
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.52 E-value=1.1e-11 Score=117.06 Aligned_cols=230 Identities=9% Similarity=-0.054 Sum_probs=144.5
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cC--CC-------------------------
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-ID--AS------------------------- 82 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~--~~------------------------- 82 (324)
++|.+.|++..+ | +...|..+...|.+.|++++|++.|++.. .. |+
T Consensus 175 ~~A~~lf~~m~~--~----~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~ 248 (697)
T PLN03081 175 IDARRLFDEMPE--R----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC 248 (697)
T ss_pred HHHHHHHhcCCC--C----CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHH
Confidence 778887777643 2 22356777777788888888888888776 32 22
Q ss_pred ---------CchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC
Q psy8160 83 ---------PCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDD 153 (324)
Q Consensus 83 ---------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 153 (324)
+...+..+...|...|+.++|.+.|++... .+ ..+|..+...|...|++++|++.|++.....-
T Consensus 249 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~~----~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE---KT----TVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC---CC----hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 122233456677777888888887765531 12 25677777888888888888888887765543
Q ss_pred CCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q psy8160 154 LPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD-PKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSE 232 (324)
Q Consensus 154 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 232 (324)
.|+ ..++..+...+.. .+++++|...+..+++.. +.+..++..+...|.+.|++++|...|++..+
T Consensus 322 ~pd---~~t~~~ll~a~~~-------~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--- 388 (697)
T PLN03081 322 SID---QFTFSIMIRIFSR-------LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--- 388 (697)
T ss_pred CCC---HHHHHHHHHHHHh-------ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---
Confidence 343 2255555555543 336666776666666554 34455566666666677777777777666532
Q ss_pred CCHHHHHHhHHHHhhcCCCHHHHHHHH------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhh
Q psy8160 233 GNADTWCSIGNKDFSNNSNREDYHQAL------------NKYRDLGDFLVINNIPTSNNNRQCYNSYST 289 (324)
Q Consensus 233 ~~~~~~~~lg~~~~~~~~~~~~A~~~~------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~ 289 (324)
.+..+|..+...|.+.|+ .++|++.| .+|..+-..+.+.|..++ |.+.|+...+
T Consensus 389 ~d~~t~n~lI~~y~~~G~-~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~--a~~~f~~m~~ 454 (697)
T PLN03081 389 KNLISWNALIAGYGNHGR-GTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ--GWEIFQSMSE 454 (697)
T ss_pred CCeeeHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHH--HHHHHHHHHH
Confidence 245566666666777777 77776666 344555555666666666 6666665543
No 91
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.52 E-value=7.1e-13 Score=98.66 Aligned_cols=118 Identities=19% Similarity=0.166 Sum_probs=102.5
Q ss_pred HHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHH
Q psy8160 106 HLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETL 185 (324)
Q Consensus 106 ~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 185 (324)
.+++++...|.+. .+.+.+|.++...|++++|+..+++++..+ |.+ ..++..+|.++.. .+++++
T Consensus 5 ~~~~~l~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~--~~~~~~la~~~~~-------~~~~~~ 69 (135)
T TIGR02552 5 TLKDLLGLDSEQL----EQIYALAYNLYQQGRYDEALKLFQLLAAYD--PYN--SRYWLGLAACCQM-------LKEYEE 69 (135)
T ss_pred hHHHHHcCChhhH----HHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CCc--HHHHHHHHHHHHH-------HHHHHH
Confidence 4556776666654 678889999999999999999999999988 877 4599999999977 458999
Q ss_pred HHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q psy8160 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTW 238 (324)
Q Consensus 186 A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 238 (324)
|+..+++++..+|.++..++.+|.++...|++++|+..|+++++.+|++...+
T Consensus 70 A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 70 AIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 99999999999999999999999999999999999999999999999887754
No 92
>KOG0553|consensus
Probab=99.52 E-value=4.7e-13 Score=107.32 Aligned_cols=120 Identities=19% Similarity=0.217 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG 201 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 201 (324)
++-+-.-|.-+...++|.+|+..|.+||.++ |.+ +..+.+.+-+|.+ +|.++.|++.++.++.++|...
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~--P~n--AVyycNRAAAy~~-------Lg~~~~AVkDce~Al~iDp~ys 149 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELD--PTN--AVYYCNRAAAYSK-------LGEYEDAVKDCESALSIDPHYS 149 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--CCc--chHHHHHHHHHHH-------hcchHHHHHHHHHHHhcChHHH
Confidence 3445556888889999999999999999999 988 6699999999977 5599999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHH
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNRE 253 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~ 253 (324)
.+|..||.+|..+|++.+|+..|+++++++|++...+.+|..+-.+.++ ..
T Consensus 150 kay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e-~~ 200 (304)
T KOG0553|consen 150 KAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE-PK 200 (304)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC-CC
Confidence 9999999999999999999999999999999999999999999888887 55
No 93
>KOG1128|consensus
Probab=99.52 E-value=1.1e-12 Score=116.13 Aligned_cols=211 Identities=14% Similarity=0.072 Sum_probs=163.6
Q ss_pred ccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q psy8160 48 LRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFH 127 (324)
Q Consensus 48 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 127 (324)
|.-......+|..+...|-...|+..|++.- .+.....+|...|+..+|.....+-+. .++++ ..|..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle-------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~----~lyc~ 462 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE-------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDP----RLYCL 462 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH-------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcc----hhHHH
Confidence 3344566788889999999999999998643 344457788888999999988888887 34443 56667
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHH
Q psy8160 128 IAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLL 207 (324)
Q Consensus 128 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 207 (324)
+|.+.....-|++|.+.++..- +.+.+.+|..... .++++++.++++..++++|-....|+.+
T Consensus 463 LGDv~~d~s~yEkawElsn~~s----------arA~r~~~~~~~~-------~~~fs~~~~hle~sl~~nplq~~~wf~~ 525 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYIS----------ARAQRSLALLILS-------NKDFSEADKHLERSLEINPLQLGTWFGL 525 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhh----------HHHHHhhcccccc-------chhHHHHHHHHHHHhhcCccchhHHHhc
Confidence 7777766666666666554432 3355555555544 3489999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCC
Q psy8160 208 GRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPT 276 (324)
Q Consensus 208 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~ 276 (324)
|.+..+.++++.|.+.|..++.++|++.++|.+++..|...++ -.+|-..+ .+|-|.-.+-.+.|.++
T Consensus 526 G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~-k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~e 604 (777)
T KOG1128|consen 526 GCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKK-KKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFE 604 (777)
T ss_pred cHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhh-hHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHH
Confidence 9999999999999999999999999999999999999999998 77776666 67777777777888888
Q ss_pred cchHHHHHHHhhhc
Q psy8160 277 SNNNRQCYNSYSTS 290 (324)
Q Consensus 277 ~~~A~~~~~~al~~ 290 (324)
+ |++.|.+.+.+
T Consensus 605 d--a~~A~~rll~~ 616 (777)
T KOG1128|consen 605 D--AIKAYHRLLDL 616 (777)
T ss_pred H--HHHHHHHHHHh
Confidence 8 88888777654
No 94
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.51 E-value=1.9e-13 Score=101.81 Aligned_cols=109 Identities=13% Similarity=0.129 Sum_probs=102.7
Q ss_pred HHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH--------
Q psy8160 188 HCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-------- 259 (324)
Q Consensus 188 ~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-------- 259 (324)
..+++++..+|.+....+.+|.++...|++++|+..+++++..+|.++.+|..+|.++...|+ +++|+..+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKE-YEEAIDAYALAAALDP 82 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCC
Confidence 368899999999999999999999999999999999999999999999999999999999999 99999988
Q ss_pred ---HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhh
Q psy8160 260 ---NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINN 299 (324)
Q Consensus 260 ---~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 299 (324)
..++.+|.+|...|++++ |+..|+++++++|+++....
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~--A~~~~~~al~~~p~~~~~~~ 123 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPES--ALKALDLAIEICGENPEYSE 123 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHH--HHHHHHHHHHhccccchHHH
Confidence 889999999999999999 99999999999999877543
No 95
>KOG1128|consensus
Probab=99.51 E-value=1.3e-12 Score=115.71 Aligned_cols=196 Identities=15% Similarity=0.150 Sum_probs=167.6
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLC 110 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 110 (324)
..|+..|++.- .+-....||...|+-.+|.....+-+..|.+..++-.+|++....--|+.|.+..+..
T Consensus 415 ksAl~I~Erle-----------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~ 483 (777)
T KOG1128|consen 415 KSALVIFERLE-----------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYI 483 (777)
T ss_pred HHHHHHHHhHH-----------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhh
Confidence 88888888753 4556677999999999999998888865666677777777766666666666644433
Q ss_pred HHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHH
Q psy8160 111 LIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCL 190 (324)
Q Consensus 111 l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~ 190 (324)
- +.+.+.+|......++|.++..+++..++++ |-... +|+++|.+..+ .++++.|..+|
T Consensus 484 s----------arA~r~~~~~~~~~~~fs~~~~hle~sl~~n--plq~~--~wf~~G~~ALq-------lek~q~av~aF 542 (777)
T KOG1128|consen 484 S----------ARAQRSLALLILSNKDFSEADKHLERSLEIN--PLQLG--TWFGLGCAALQ-------LEKEQAAVKAF 542 (777)
T ss_pred h----------HHHHHhhccccccchhHHHHHHHHHHHhhcC--ccchh--HHHhccHHHHH-------HhhhHHHHHHH
Confidence 2 2456777777788899999999999999999 87744 99999999988 44999999999
Q ss_pred HHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 191 QKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 191 ~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
..++.++|++..+|.+++..|...++-.+|...+.+|++.+-+++..|.+.-.+....|. +++|++.|
T Consensus 543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge-~eda~~A~ 610 (777)
T KOG1128|consen 543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGE-FEDAIKAY 610 (777)
T ss_pred HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhccc-HHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999 99999999
No 96
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.50 E-value=8.1e-12 Score=98.44 Aligned_cols=174 Identities=12% Similarity=0.025 Sum_probs=131.0
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy8160 69 SALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQL 148 (324)
Q Consensus 69 ~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 148 (324)
.+..+....+.+|.+..+ ..++..+...|+-+.+.....++....+.+. .+...+|......|++..|+..++++
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~----~ll~~~gk~~~~~g~~~~A~~~~rkA 126 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDR----ELLAAQGKNQIRNGNFGEAVSVLRKA 126 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccH----HHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 344444444477777777 6777777777877777777777665555544 45555788888888888888888888
Q ss_pred HhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8160 149 LKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSV 228 (324)
Q Consensus 149 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 228 (324)
.... |++ .++|..+|-+|.+ .|+.++|..-|.+++++.|.++.+..++|..+.-.|+++.|...+..+.
T Consensus 127 ~~l~--p~d--~~~~~~lgaaldq-------~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~ 195 (257)
T COG5010 127 ARLA--PTD--WEAWNLLGAALDQ-------LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAY 195 (257)
T ss_pred hccC--CCC--hhhhhHHHHHHHH-------ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 8877 777 4488888888855 4488888888888888888888888888888888888888888888887
Q ss_pred ccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 229 EKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 229 ~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
...+.+..+.-+++.+.-..|+ +..|.+.-
T Consensus 196 l~~~ad~~v~~NLAl~~~~~g~-~~~A~~i~ 225 (257)
T COG5010 196 LSPAADSRVRQNLALVVGLQGD-FREAEDIA 225 (257)
T ss_pred hCCCCchHHHHHHHHHHhhcCC-hHHHHhhc
Confidence 7777788888888888888888 77776543
No 97
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.49 E-value=1.1e-11 Score=115.64 Aligned_cols=221 Identities=14% Similarity=0.007 Sum_probs=162.0
Q ss_pred ccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCc--------
Q psy8160 48 LRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCT-------- 118 (324)
Q Consensus 48 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~-------- 118 (324)
|.+.+++..|...+...+++++|+...+.++ ..|+...+++.+|.++...+++..+.-. .++...+...
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~ 105 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHI 105 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHH
Confidence 3456788889999988999999999999888 8899999999999888888877776665 4444433332
Q ss_pred -------ccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHH
Q psy8160 119 -------FTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQ 191 (324)
Q Consensus 119 -------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~ 191 (324)
.....+++.+|.||..+|+.++|...|++++..+ |.+ +.++.++|..+.. . +.++|+.++.
T Consensus 106 ~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n--~~aLNn~AY~~ae-------~-dL~KA~~m~~ 173 (906)
T PRK14720 106 CDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RDN--PEIVKKLATSYEE-------E-DKEKAITYLK 173 (906)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--ccc--HHHHHHHHHHHHH-------h-hHHHHHHHHH
Confidence 0111477778888888888888888888888888 777 4488888877755 3 6777888888
Q ss_pred HHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHH
Q psy8160 192 KSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVI 271 (324)
Q Consensus 192 ~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~ 271 (324)
+|+.. +...+++.++.+.+.+.+..+|++.+....+=......-. +..++ ..+.-+=..|..
T Consensus 174 KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~-~~~~~---~~~~~l~~~y~~ 235 (906)
T PRK14720 174 KAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHRE-FTRLV---GLLEDLYEPYKA 235 (906)
T ss_pred HHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhc-cchhH---HHHHHHHHHHhh
Confidence 87766 5666778888888888888888887765554333222211 23333 234445567888
Q ss_pred cCCCCcchHHHHHHHhhhcCCChhhhhhchh
Q psy8160 272 NNIPTSNNNRQCYNSYSTSIASCKHINNNKD 302 (324)
Q Consensus 272 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 302 (324)
.+++++ ++..++.+++++|+|..++..+.
T Consensus 236 ~~~~~~--~i~iLK~iL~~~~~n~~a~~~l~ 264 (906)
T PRK14720 236 LEDWDE--VIYILKKILEHDNKNNKAREELI 264 (906)
T ss_pred hhhhhH--HHHHHHHHHhcCCcchhhHHHHH
Confidence 899999 99999999999999887766654
No 98
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.48 E-value=4.9e-12 Score=117.85 Aligned_cols=254 Identities=8% Similarity=-0.056 Sum_probs=189.6
Q ss_pred hhccccccchhhhHhHHHH-H----HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCc
Q psy8160 11 EGIVTSVRVPKLQQFGKTL-N----IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPC 84 (324)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~-~----~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~ 84 (324)
.+-.+|..+..+.++.... . ++|+......++..|+. ...++.+|.++.+.+++.++... .++ .-+.+.
T Consensus 23 ~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~---i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~ 97 (906)
T PRK14720 23 ANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKS---ISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL 97 (906)
T ss_pred cccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcc---eehHHHHHHHHHhhcchhhhhhh--hhhhhccccc
Confidence 3445555655555543333 2 99999999999999874 45799999999998888776665 444 444443
Q ss_pred -------------------hhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHH
Q psy8160 85 -------------------TFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSY 145 (324)
Q Consensus 85 -------------------~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 145 (324)
.+...+|.+|...|+.++|...|++++..+|.+. .+..++|..+... ++++|++++
T Consensus 98 ~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~----~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 98 KWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNP----EIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred chhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccH----HHHHHHHHHHHHh-hHHHHHHHH
Confidence 7888899999999999999999999999998876 8999999999999 999999999
Q ss_pred HHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH--------------------HHHH
Q psy8160 146 EQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG--------------------QSLY 205 (324)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--------------------~~~~ 205 (324)
.+++... -+ .+++.++..++.+.+..+|.+. ..+.
T Consensus 173 ~KAV~~~--i~-----------------------~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~ 227 (906)
T PRK14720 173 KKAIYRF--IK-----------------------KKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLE 227 (906)
T ss_pred HHHHHHH--Hh-----------------------hhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHH
Confidence 9998764 11 1144555555556555555544 3344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHH
Q psy8160 206 LLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYN 285 (324)
Q Consensus 206 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~ 285 (324)
-+=.+|...++|++++..++.+++.+|++..+...++.||... |.. ...++-+..+..+-..-..+.. |+..|+
T Consensus 228 ~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~k---Y~~-~~~~ee~l~~s~l~~~~~~~~~--~i~~fe 301 (906)
T PRK14720 228 DLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEK---YKD-HSLLEDYLKMSDIGNNRKPVKD--CIADFE 301 (906)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHH---ccC-cchHHHHHHHhccccCCccHHH--HHHHHH
Confidence 4458899999999999999999999999999999999999833 322 2222222333332222235678 999999
Q ss_pred HhhhcCCChhhhhhchhhhc
Q psy8160 286 SYSTSIASCKHINNNKDFSN 305 (324)
Q Consensus 286 ~al~~~p~~~~~~~~l~~~~ 305 (324)
+.+..+|++--++...++..
T Consensus 302 k~i~f~~G~yv~H~~WGvG~ 321 (906)
T PRK14720 302 KNIVFDTGNFVYHRTWGVGK 321 (906)
T ss_pred HHeeecCCCEEEEcCCCCce
Confidence 99999999988887776543
No 99
>PLN03077 Protein ECB2; Provisional
Probab=99.46 E-value=6e-11 Score=114.82 Aligned_cols=227 Identities=12% Similarity=0.077 Sum_probs=120.7
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh---cCCCCchhhHHHHHHHHhcccHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL---IDASPCTFTKLEGLMFKVNNEYDSALKHL 107 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 107 (324)
++|.+.|++... |+ ...|..+...|.+.|++++|++.|++.. ..|+.......+. .+...|+.+.|.+.+
T Consensus 340 ~~A~~vf~~m~~--~d----~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~-a~~~~g~~~~a~~l~ 412 (857)
T PLN03077 340 GEAEKVFSRMET--KD----AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS-ACACLGDLDVGVKLH 412 (857)
T ss_pred HHHHHHHhhCCC--CC----eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHH-HHhccchHHHHHHHH
Confidence 666666665432 21 2245666666666666666666666554 2344443333332 444555555555555
Q ss_pred HHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHH
Q psy8160 108 TLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAI 187 (324)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~ 187 (324)
+.+........ ..++..+...|...|++++|.+.|++....+ ..+|..+...|.. .++.++|+
T Consensus 413 ~~~~~~g~~~~---~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d-------~vs~~~mi~~~~~-------~g~~~eA~ 475 (857)
T PLN03077 413 ELAERKGLISY---VVVANALIEMYSKCKCIDKALEVFHNIPEKD-------VISWTSIIAGLRL-------NNRCFEAL 475 (857)
T ss_pred HHHHHhCCCcc---hHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-------eeeHHHHHHHHHH-------CCCHHHHH
Confidence 55554432221 2345556666777777777777776643222 1245555444433 33666666
Q ss_pred HHHHHHhhh-CCccHHHH----------------------------------HHHHHHHHHcCCHHHHHHHHHHHHccCC
Q psy8160 188 HCLQKSIEA-DPKSGQSL----------------------------------YLLGRCFAAVGKVHDAFLAYRNSVEKSE 232 (324)
Q Consensus 188 ~~~~~al~~-~~~~~~~~----------------------------------~~lg~~~~~~~~~~~A~~~~~~al~~~p 232 (324)
..|++.+.. .|+..... ..+-..|.+.|+.++|...|+.. +
T Consensus 476 ~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~ 551 (857)
T PLN03077 476 IFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----E 551 (857)
T ss_pred HHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----C
Confidence 666666532 22221111 11224455556666666666553 3
Q ss_pred CCHHHHHHhHHHHhhcCCCHHHHHHHH------------HHHHhhHHHHHHcCCCCcchHHHHHHHhh
Q psy8160 233 GNADTWCSIGNKDFSNNSNREDYHQAL------------NKYRDLGDFLVINNIPTSNNNRQCYNSYS 288 (324)
Q Consensus 233 ~~~~~~~~lg~~~~~~~~~~~~A~~~~------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al 288 (324)
.+..+|..+...|...|+ .++|++.| .++..+-..+.+.|..++ |.++|+...
T Consensus 552 ~d~~s~n~lI~~~~~~G~-~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~e--a~~~f~~M~ 616 (857)
T PLN03077 552 KDVVSWNILLTGYVAHGK-GSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ--GLEYFHSME 616 (857)
T ss_pred CChhhHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHH--HHHHHHHHH
Confidence 455666666666666666 66666666 334444445555666666 666666555
No 100
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.46 E-value=9.2e-12 Score=115.02 Aligned_cols=145 Identities=10% Similarity=0.014 Sum_probs=121.7
Q ss_pred cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCch
Q psy8160 79 IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHL 158 (324)
Q Consensus 79 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 158 (324)
.-|....++.+||.+....|.+++|+..++.++...|.+. .++..++.++...+++++|+..+++++..+ |++
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~----~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~--p~~- 153 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS----EAFILMLRGVKRQQGIEAGRAEIELYFSGG--SSS- 153 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH----HHHHHHHHHHHHhccHHHHHHHHHHHhhcC--CCC-
Confidence 3577788888888888888888888888888888888876 788888888888899999999999988888 887
Q ss_pred hhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q psy8160 159 KADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTW 238 (324)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 238 (324)
+..++.+|.++.. .|++++|+..|++++..+|+++.+|..+|.++...|+.++|...|+++++...+-...+
T Consensus 154 -~~~~~~~a~~l~~-------~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 154 -AREILLEAKSWDE-------IGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred -HHHHHHHHHHHHH-------hcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 5588888888865 45888999999999888888888999999999999999999999999988776555443
No 101
>KOG1130|consensus
Probab=99.44 E-value=1.7e-13 Score=113.88 Aligned_cols=231 Identities=14% Similarity=0.096 Sum_probs=175.0
Q ss_pred HHHHHHhccHHHHHHHHHHHh-cCCCCchh----hHHHHHHHHhcccHHHHHHHHHHHHHh--cCCCcccHHHHHHHHHH
Q psy8160 58 GLMFKVNNEYDSALKHLTLCL-IDASPCTF----TKLEGLMFKVNNEYDSALKHLTLCLID--ASPCTFTKLEVRFHIAH 130 (324)
Q Consensus 58 g~~~~~~~~~~~A~~~~~~al-~~~~~~~~----~~~la~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~~~~~la~ 130 (324)
|.-.+++|++...+..|+.++ ....+... +..+|+.|...++|++|+++...-+.. ...+....+.+.-++|.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 455678999999999999999 66655443 344799999999999999977654322 22222333356678999
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCC--CCchhhHHHHHHHHHHHhhh-hh--------c----ccchhHHHHHHHHHHHhh
Q psy8160 131 LHEVQRKYKTAKDSYEQLLKEDDL--PVHLKADICRQLGWMYHCID-TL--------G----EKSHRETLAIHCLQKSIE 195 (324)
Q Consensus 131 ~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~-~~--------~----~~~~~~~~A~~~~~~al~ 195 (324)
++...|.|++|+.+..+-+..... ..-.++.+++++|.+|.... .. | +....++.|.++|..-++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988877654311 11123679999999995421 01 1 124456778888888777
Q ss_pred hCCccH------HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------HHHHHHhHHHHhhcCCCHHHHHHHH----
Q psy8160 196 ADPKSG------QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN------ADTWCSIGNKDFSNNSNREDYHQAL---- 259 (324)
Q Consensus 196 ~~~~~~------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~~A~~~~---- 259 (324)
+..... .++-+||..|+-.|+|+.|+..-+.=+.+.... -.++.++|.++.-.|+ ++.|+++|
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~-fe~A~ehYK~tl 262 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN-FELAIEHYKLTL 262 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc-cHhHHHHHHHHH
Confidence 654433 577889999999999999999888777766544 3478899999999999 99999999
Q ss_pred -------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcC
Q psy8160 260 -------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSI 291 (324)
Q Consensus 260 -------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~ 291 (324)
...+.||..|.-..++++ ||.++.+.+.+.
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~k--AI~Yh~rHLaIA 305 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQK--AITYHQRHLAIA 305 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHH
Confidence 567899999999999999 999999988764
No 102
>PLN03077 Protein ECB2; Provisional
Probab=99.43 E-value=3.3e-10 Score=109.70 Aligned_cols=264 Identities=11% Similarity=-0.003 Sum_probs=175.4
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLC 110 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 110 (324)
++|.+.+..+.+.... .+..++..+...|.+.|++++|.+.|++.. + .+...+..+...|...|+.++|+..|++.
T Consensus 406 ~~a~~l~~~~~~~g~~--~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~-~d~vs~~~mi~~~~~~g~~~eA~~lf~~m 481 (857)
T PLN03077 406 DVGVKLHELAERKGLI--SYVVVANALIEMYSKCKCIDKALEVFHNIP-E-KDVISWTSIIAGLRLNNRCFEALIFFRQM 481 (857)
T ss_pred HHHHHHHHHHHHhCCC--cchHHHHHHHHHHHHcCCHHHHHHHHHhCC-C-CCeeeHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4455555554443321 123345566677777888888888887654 1 23445666667777788888888888877
Q ss_pred HHhcCCCcccHHH-------------------------------HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh
Q psy8160 111 LIDASPCTFTKLE-------------------------------VRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK 159 (324)
Q Consensus 111 l~~~~~~~~~~~~-------------------------------~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 159 (324)
+...+++..+-.. +...+-..|...|+.++|...|+.. . ++
T Consensus 482 ~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~--~d--- 553 (857)
T PLN03077 482 LLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---E--KD--- 553 (857)
T ss_pred HhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---C--CC---
Confidence 6543333211100 1112235566667777777777664 1 22
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc---CCCC
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA--DPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK---SEGN 234 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~ 234 (324)
..+|..+...|.. .|+.++|+..|++..+. .|+ ..++..+-..+...|++++|...|+...+. .| +
T Consensus 554 ~~s~n~lI~~~~~-------~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P-~ 624 (857)
T PLN03077 554 VVSWNILLTGYVA-------HGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP-N 624 (857)
T ss_pred hhhHHHHHHHHHH-------cCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC-c
Confidence 3367777766655 45889999999988763 454 344555556788899999999999988743 34 4
Q ss_pred HHHHHHhHHHHhhcCCCHHHHHHHH---------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhc
Q psy8160 235 ADTWCSIGNKDFSNNSNREDYHQAL---------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSN 305 (324)
Q Consensus 235 ~~~~~~lg~~~~~~~~~~~~A~~~~---------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 305 (324)
...+..+..++.+.|+ +++|.+.+ .+|..|-..+...++.+. +....+++++++|+++.....+..+.
T Consensus 625 ~~~y~~lv~~l~r~G~-~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~--~e~~a~~l~~l~p~~~~~y~ll~n~y 701 (857)
T PLN03077 625 LKHYACVVDLLGRAGK-LTEAYNFINKMPITPDPAVWGALLNACRIHRHVEL--GELAAQHIFELDPNSVGYYILLCNLY 701 (857)
T ss_pred hHHHHHHHHHHHhCCC-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH--HHHHHHHHHhhCCCCcchHHHHHHHH
Confidence 5688889999999999 99999988 678777778888888888 99999999999999887766554332
Q ss_pred cCChhhHHHHHHHH
Q psy8160 306 NSNREDYHQALNKY 319 (324)
Q Consensus 306 ~~~~~~~~~a~~~~ 319 (324)
...|++++|..-.
T Consensus 702 -a~~g~~~~a~~vr 714 (857)
T PLN03077 702 -ADAGKWDEVARVR 714 (857)
T ss_pred -HHCCChHHHHHHH
Confidence 2234455444433
No 103
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.43 E-value=2.7e-12 Score=94.61 Aligned_cols=92 Identities=14% Similarity=0.017 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWC 239 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 239 (324)
-+..+.+|..++. .|++++|+..|+-+...+|.+...|++||.|+..+|++++|+..|.+++.++|++|..++
T Consensus 35 l~~lY~~A~~ly~-------~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 35 LNTLYRYAMQLME-------VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred HHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 3477888888877 559999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHhhcCCCHHHHHHHH
Q psy8160 240 SIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 240 ~lg~~~~~~~~~~~~A~~~~ 259 (324)
++|.|++..|+ .+.|.++|
T Consensus 108 ~ag~c~L~lG~-~~~A~~aF 126 (157)
T PRK15363 108 AAAECYLACDN-VCYAIKAL 126 (157)
T ss_pred HHHHHHHHcCC-HHHHHHHH
Confidence 99999999999 77776665
No 104
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.40 E-value=1.2e-10 Score=91.84 Aligned_cols=179 Identities=15% Similarity=0.083 Sum_probs=160.0
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
..+...+-+....+|+ ..++ ..++..+...|+-+.+.....++. ..|++......+|......|+|.+|+..+.+
T Consensus 50 ~~a~~al~~~~~~~p~---d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rk 125 (257)
T COG5010 50 QGAAAALGAAVLRNPE---DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRK 125 (257)
T ss_pred hHHHHHHHHHHhcCcc---hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 6677777777788875 3456 889999999999999999999988 8899988888899999999999999999999
Q ss_pred HHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHH
Q psy8160 110 CLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHC 189 (324)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~ 189 (324)
+....|++. +++..+|-+|.+.|+++.|...|.++++.. |.. +.+..++|..+.- .|+++.|..+
T Consensus 126 A~~l~p~d~----~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--~~~--p~~~nNlgms~~L-------~gd~~~A~~l 190 (257)
T COG5010 126 AARLAPTDW----EAWNLLGAALDQLGRFDEARRAYRQALELA--PNE--PSIANNLGMSLLL-------RGDLEDAETL 190 (257)
T ss_pred HhccCCCCh----hhhhHHHHHHHHccChhHHHHHHHHHHHhc--cCC--chhhhhHHHHHHH-------cCCHHHHHHH
Confidence 999999887 899999999999999999999999999999 877 4599999999976 5599999999
Q ss_pred HHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8160 190 LQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSV 228 (324)
Q Consensus 190 ~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 228 (324)
+.++...-+.+..+..+++.+....|+++.|.....+-+
T Consensus 191 ll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 191 LLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 999998888899999999999999999999998765543
No 105
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.37 E-value=3.5e-11 Score=88.78 Aligned_cols=99 Identities=10% Similarity=0.022 Sum_probs=94.2
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
.-+..+.+|..++..|++++|.+.|+-++ .||.+...+..||.++...|++.+|+..|.+++...|.++ ..++++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp----~~~~~a 109 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP----QAPWAA 109 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc----hHHHHH
Confidence 45678999999999999999999999999 9999999999999999999999999999999999998887 889999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcC
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~ 152 (324)
|.|+...|+.+.|.+.|+.++...
T Consensus 110 g~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999876
No 106
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.36 E-value=2.4e-10 Score=90.93 Aligned_cols=168 Identities=16% Similarity=0.184 Sum_probs=118.4
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH 130 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~ 130 (324)
++.++..|..++..|+|++|++.|+ +++...|.+.. ..++.+.+|.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~---------------------------------~l~~~~P~s~~-a~~A~l~la~ 50 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFE---------------------------------KLIDRYPNSPY-APQAQLMLAY 50 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHH---------------------------------HHHHH-TTSTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHH---------------------------------HHHHHCCCChH-HHHHHHHHHH
Confidence 3455666666666666666666666 44444444432 2367888899
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCCCchh-hHHHHHHHHHHHhhhhh----cccchhHHHHHHHHHHHhhhCCccHH---
Q psy8160 131 LHEVQRKYKTAKDSYEQLLKEDDLPVHLK-ADICRQLGWMYHCIDTL----GEKSHRETLAIHCLQKSIEADPKSGQ--- 202 (324)
Q Consensus 131 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~l~~~~~~~~~~----~~~~~~~~~A~~~~~~al~~~~~~~~--- 202 (324)
++...|+++.|+..+++.+... |.+.. ..+++.+|.+++..... ........+|+..|+..+...|+++.
T Consensus 51 a~y~~~~y~~A~~~~~~fi~~y--P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~ 128 (203)
T PF13525_consen 51 AYYKQGDYEEAIAAYERFIKLY--PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEE 128 (203)
T ss_dssp HHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHH
Confidence 9999999999999999999888 76654 57888888887653211 11244678999999999999999861
Q ss_pred --------------HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH---HHHHHhHHHHhhcCCCHHHH
Q psy8160 203 --------------SLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA---DTWCSIGNKDFSNNSNREDY 255 (324)
Q Consensus 203 --------------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~~~~~~~A 255 (324)
--+.+|..|...|.+..|+..++.+++..|+.+ +++..++..|..+|. .+.|
T Consensus 129 A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~-~~~a 197 (203)
T PF13525_consen 129 AKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGL-KQAA 197 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCC-hHHH
Confidence 224578999999999999999999999999884 578889999999998 7754
No 107
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.36 E-value=2e-11 Score=105.34 Aligned_cols=114 Identities=19% Similarity=0.105 Sum_probs=103.4
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHH
Q psy8160 125 RFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSL 204 (324)
Q Consensus 125 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 204 (324)
+...|...+..|++++|+..|++++..+ |.+ +.++..+|.++.. .+++++|+..+++++.++|.++.++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~--P~~--~~a~~~~a~~~~~-------~g~~~eAl~~~~~Al~l~P~~~~a~ 73 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLD--PNN--AELYADRAQANIK-------LGNFTEAVADANKAIELDPSLAKAY 73 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC--HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCcCCHHHH
Confidence 4456888889999999999999999999 887 4599999999977 5599999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcC
Q psy8160 205 YLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNN 249 (324)
Q Consensus 205 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 249 (324)
+.+|.++..+|++++|+..|++++.++|+++.+...++.|.....
T Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 74 LRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988866553
No 108
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.35 E-value=3.8e-11 Score=100.63 Aligned_cols=160 Identities=16% Similarity=0.125 Sum_probs=104.9
Q ss_pred HHHHHhcccHHHHHHHHHHHHHh--cCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCch--hhHHHHHH
Q psy8160 91 GLMFKVNNEYDSALKHLTLCLID--ASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHL--KADICRQL 166 (324)
Q Consensus 91 a~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~l 166 (324)
|..|...+++++|.++|.++... ...+.......+...+.++... ++++|+.+|++++......+.. -+.++..+
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~l 120 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKEL 120 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 45555555555555555555332 1222223345566677777666 9999999999998764222222 26788899
Q ss_pred HHHHHhhhhhcccc-hhHHHHHHHHHHHhhhCCcc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-----
Q psy8160 167 GWMYHCIDTLGEKS-HRETLAIHCLQKSIEADPKS------GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN----- 234 (324)
Q Consensus 167 ~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~~~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----- 234 (324)
|.+|.. . +++++|+.+|++|++..... ...+..+|.++...|+|++|+..|+++....-++
T Consensus 121 A~~ye~-------~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 121 AEIYEE-------QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHCC-------TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHH-------HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 998855 3 59999999999998764222 2667889999999999999999999998754322
Q ss_pred --HHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 235 --ADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 235 --~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
...++..+.|++..|+ +..|...+
T Consensus 194 ~~~~~~l~a~l~~L~~~D-~v~A~~~~ 219 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGD-YVAARKAL 219 (282)
T ss_dssp HHHHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 2345566777777777 77666665
No 109
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.35 E-value=3.9e-11 Score=100.10 Aligned_cols=221 Identities=15% Similarity=0.162 Sum_probs=148.2
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHhcCC---CCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCLIDA---SPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFH 127 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 127 (324)
..+...++..+...++-+.++..++..+.++ .+.......|.++...|++++|++.+.+. . ..+....
T Consensus 66 l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~----~lE~~al 136 (290)
T PF04733_consen 66 LQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----G----SLELLAL 136 (290)
T ss_dssp CHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----T----CHHHHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----C----cccHHHH
Confidence 3344555555444445666666666655222 33444555678888889999888855432 1 1255666
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHH
Q psy8160 128 IAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLL 207 (324)
Q Consensus 128 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 207 (324)
.-.++...++++.|.+.++..-+.+ .+.+- +....+|+... .| .+.+.+|..+|++..+..+.++..+..+
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~~l--~qLa~awv~l~---~g--~e~~~~A~y~f~El~~~~~~t~~~lng~ 207 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQID--EDSIL--TQLAEAWVNLA---TG--GEKYQDAFYIFEELSDKFGSTPKLLNGL 207 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCS--CCHHH--HHHHHHHHHHH---HT--TTCCCHHHHHHHHHHCCS--SHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--CcHHH--HHHHHHHHHHH---hC--chhHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 6778888999999999998887776 65522 33333444433 22 2367889999999888778888888899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHh
Q psy8160 208 GRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSY 287 (324)
Q Consensus 208 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~a 287 (324)
+.+++.+|+|++|...+.+++..+|++++++.+++.+....|+ .. +. +.++..+.
T Consensus 208 A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk-~~----------------------~~--~~~~l~qL 262 (290)
T PF04733_consen 208 AVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK-PT----------------------EA--AERYLSQL 262 (290)
T ss_dssp HHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT--TC----------------------HH--HHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC-Ch----------------------hH--HHHHHHHH
Confidence 9999999999999999999999999999988888888888777 21 23 55677777
Q ss_pred hhcCCChhhhhhchhhhccCChhhHHHHHHHH
Q psy8160 288 STSIASCKHINNNKDFSNNSNREDYHQALNKY 319 (324)
Q Consensus 288 l~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~ 319 (324)
...+|++|.+..... ....|+++..+|
T Consensus 263 ~~~~p~h~~~~~~~~-----~~~~FD~~~~ky 289 (290)
T PF04733_consen 263 KQSNPNHPLVKDLAE-----KEAEFDRAVAKY 289 (290)
T ss_dssp HHHTTTSHHHHHHHH-----HHHHHHHHHHCC
T ss_pred HHhCCCChHHHHHHH-----HHHHHHHHHHhc
Confidence 778898887655332 246677776665
No 110
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.32 E-value=2.4e-11 Score=93.90 Aligned_cols=141 Identities=10% Similarity=0.069 Sum_probs=107.4
Q ss_pred HhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc---HHHHHHHHHH
Q psy8160 134 VQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS---GQSLYLLGRC 210 (324)
Q Consensus 134 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~lg~~ 210 (324)
..+.+..+...+...+... +....+..++.+|.++.. .+++++|+..|++++.+.|+. +.+++++|.+
T Consensus 11 ~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~g~~~~~-------~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~ 81 (168)
T CHL00033 11 IDKTFTIVADILLRILPTT--SGEKEAFTYYRDGMSAQS-------EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLI 81 (168)
T ss_pred cccccccchhhhhHhccCC--chhHHHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHH
Confidence 3444666666666655555 444457788999999876 459999999999999887653 4589999999
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhc
Q psy8160 211 FAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTS 290 (324)
Q Consensus 211 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~ 290 (324)
+...|++++|+..|++++.++|.++..+..+|.++...|. ....+|........+++ |+..|++++..
T Consensus 82 ~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~----------~~~~~g~~~~A~~~~~~--a~~~~~~a~~~ 149 (168)
T CHL00033 82 HTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGE----------QAIEQGDSEIAEAWFDQ--AAEYWKQAIAL 149 (168)
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhH----------HHHHcccHHHHHHHHHH--HHHHHHHHHHh
Confidence 9999999999999999999999999999999999985554 11122332223334667 99999999999
Q ss_pred CCChh
Q psy8160 291 IASCK 295 (324)
Q Consensus 291 ~p~~~ 295 (324)
+|.+.
T Consensus 150 ~p~~~ 154 (168)
T CHL00033 150 APGNY 154 (168)
T ss_pred CcccH
Confidence 98643
No 111
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.32 E-value=9.2e-10 Score=89.69 Aligned_cols=165 Identities=9% Similarity=0.051 Sum_probs=115.7
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh-hHHHHHHHHH
Q psy8160 91 GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK-ADICRQLGWM 169 (324)
Q Consensus 91 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~l~~~ 169 (324)
|..+...|++++|++.|++++...|.+. ....+.+.+|.++...+++++|+..|++.+... |++.. ..+++.+|.+
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~-~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~--P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGP-YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--cCCCchHHHHHHHHHh
Confidence 4444444555555555555555555443 222456778888888888888888888888887 66644 5677777776
Q ss_pred HHhhhh-----------hcccchhHHHHHHHHHHHhhhCCccHH-----------------HHHHHHHHHHHcCCHHHHH
Q psy8160 170 YHCIDT-----------LGEKSHRETLAIHCLQKSIEADPKSGQ-----------------SLYLLGRCFAAVGKVHDAF 221 (324)
Q Consensus 170 ~~~~~~-----------~~~~~~~~~~A~~~~~~al~~~~~~~~-----------------~~~~lg~~~~~~~~~~~A~ 221 (324)
+..... .........+|+..|++.++..|++.- --+.+|..|...|.|..|+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~ 195 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVV 195 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence 533210 000122356789999999999998861 1235788899999999999
Q ss_pred HHHHHHHccCCCC---HHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 222 LAYRNSVEKSEGN---ADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 222 ~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.-++.+++.-|+. +++...++..|...|. .++|.+..
T Consensus 196 ~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~-~~~a~~~~ 235 (243)
T PRK10866 196 NRVEQMLRDYPDTQATRDALPLMENAYRQLQL-NAQADKVA 235 (243)
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC-hHHHHHHH
Confidence 9999999988876 5788889999999999 88886643
No 112
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.31 E-value=6.5e-11 Score=91.81 Aligned_cols=129 Identities=10% Similarity=0.085 Sum_probs=104.4
Q ss_pred HHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc---HHHHHHHHHHHHHcCCHHHHHH
Q psy8160 146 EQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS---GQSLYLLGRCFAAVGKVHDAFL 222 (324)
Q Consensus 146 ~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~lg~~~~~~~~~~~A~~ 222 (324)
...+..+ +....+.+++.+|..+.. .+++++|+.+|+++++..|+. +.++..+|.++...|++++|+.
T Consensus 23 ~~~~~~~--~~~~~a~~~~~lg~~~~~-------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 93 (172)
T PRK02603 23 LKILPIN--KKAKEAFVYYRDGMSAQA-------DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALE 93 (172)
T ss_pred HHHcccc--cHhhhHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4444444 333346789999999976 559999999999999887653 4689999999999999999999
Q ss_pred HHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChh
Q psy8160 223 AYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCK 295 (324)
Q Consensus 223 ~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (324)
.+++++...|.++..+..+|.++...|+ ...+...+ -.....+.+ |++++++++..+|++.
T Consensus 94 ~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~a~~~~---------~~A~~~~~~--A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 94 YYHQALELNPKQPSALNNIAVIYHKRGE-KAEEAGDQ---------DEAEALFDK--AAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCC-hHhHhhCH---------HHHHHHHHH--HHHHHHHHHhhCchhH
Confidence 9999999999999999999999999998 76665433 112234678 9999999999999873
No 113
>KOG3785|consensus
Probab=99.31 E-value=3.8e-09 Score=86.86 Aligned_cols=235 Identities=11% Similarity=0.055 Sum_probs=162.0
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
.-|+..++-.+..+.+ ........+|.|+++.|||++|+..|..+. .+..+...+..+|-++...|.|.+|...-.+
T Consensus 39 tGAislLefk~~~~~E--EE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~k 116 (557)
T KOG3785|consen 39 TGAISLLEFKLNLDRE--EEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEK 116 (557)
T ss_pred hhHHHHHHHhhccchh--hhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhh
Confidence 6788887777755543 234577889999999999999999999988 7888888999999999999999999985554
Q ss_pred HHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHH
Q psy8160 110 CLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHC 189 (324)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~ 189 (324)
+ |.++ ....+.+.++ ...++ ++-+..|.+.+... . +-...++.+++.. -.|++|++.
T Consensus 117 a----~k~p-L~~RLlfhla---hklnd-Ek~~~~fh~~LqD~--~-----EdqLSLAsvhYmR-------~HYQeAIdv 173 (557)
T KOG3785|consen 117 A----PKTP-LCIRLLFHLA---HKLND-EKRILTFHSSLQDT--L-----EDQLSLASVHYMR-------MHYQEAIDV 173 (557)
T ss_pred C----CCCh-HHHHHHHHHH---HHhCc-HHHHHHHHHHHhhh--H-----HHHHhHHHHHHHH-------HHHHHHHHH
Confidence 4 3333 1224444444 33443 33344555554433 1 1223344444331 158889999
Q ss_pred HHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhc--CCCHHHH-HHHH-------
Q psy8160 190 LQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSN--NSNREDY-HQAL------- 259 (324)
Q Consensus 190 ~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~--~~~~~~A-~~~~------- 259 (324)
|.+.+..+|+..-.-..++.||.++.-++-+.+.+..-++..|+++-+....+-..++. |+ ..++ ++.+
T Consensus 174 YkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr-~ae~E~k~ladN~~~~ 252 (557)
T KOG3785|consen 174 YKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGR-TAEDEKKELADNIDQE 252 (557)
T ss_pred HHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccc-hhHHHHHHHHhccccc
Confidence 99999888888777788899999999999999998888999998887766555544433 22 2211 1111
Q ss_pred ---------------------------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhh
Q psy8160 260 ---------------------------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKH 296 (324)
Q Consensus 260 ---------------------------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 296 (324)
++-.+|...|..+++.++ |+...+ +++|..|.
T Consensus 253 ~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqe--A~~L~K---dl~PttP~ 317 (557)
T KOG3785|consen 253 YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQE--AISLCK---DLDPTTPY 317 (557)
T ss_pred chhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHH--HHHHHh---hcCCCChH
Confidence 566777777777787777 777665 55677664
No 114
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.30 E-value=6.8e-10 Score=94.89 Aligned_cols=153 Identities=14% Similarity=0.109 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHH
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQ 202 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 202 (324)
.+++..+..+...|++++|+..++.++... |++. ..+...+.++.. .++.++|++.+++++.++|..+-
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~--P~N~--~~~~~~~~i~~~-------~nk~~~A~e~~~kal~l~P~~~~ 375 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAAQ--PDNP--YYLELAGDILLE-------ANKAKEAIERLKKALALDPNSPL 375 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCH--HHHHHHHHHHHH-------cCChHHHHHHHHHHHhcCCCccH
Confidence 688999999999999999999999999988 9884 377777888866 44899999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHH
Q psy8160 203 SLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQ 282 (324)
Q Consensus 203 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~ 282 (324)
.++++|.+++..|++.+|+..++..+..+|+++..|..|+..|..+|+ ..+|... .+..|.-.|.+++ |+.
T Consensus 376 l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~-~~~a~~A------~AE~~~~~G~~~~--A~~ 446 (484)
T COG4783 376 LQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN-RAEALLA------RAEGYALAGRLEQ--AII 446 (484)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc-hHHHHHH------HHHHHHhCCCHHH--HHH
Confidence 999999999999999999999999999999999999999999999999 8887554 5566667889999 999
Q ss_pred HHHHhhhcC-CChh
Q psy8160 283 CYNSYSTSI-ASCK 295 (324)
Q Consensus 283 ~~~~al~~~-p~~~ 295 (324)
.+..+.+.. ++.+
T Consensus 447 ~l~~A~~~~~~~~~ 460 (484)
T COG4783 447 FLMRASQQVKLGFP 460 (484)
T ss_pred HHHHHHHhccCCcH
Confidence 999998765 4444
No 115
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.28 E-value=4.1e-11 Score=103.49 Aligned_cols=97 Identities=10% Similarity=0.121 Sum_probs=83.1
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.+++++|+..|+++++.+|.++.+|+.+|.++...|++++|+..+++++.++|+++.+|+.+|.++...|+ +++
T Consensus 15 ~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~-~~e----- 88 (356)
T PLN03088 15 DDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE-YQT----- 88 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC-HHH-----
Confidence 45999999999999999999999999999999999999999999999999999999999999999888888 544
Q ss_pred HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchh
Q psy8160 260 NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKD 302 (324)
Q Consensus 260 ~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 302 (324)
|+..|+++++++|+++.+...+.
T Consensus 89 --------------------A~~~~~~al~l~P~~~~~~~~l~ 111 (356)
T PLN03088 89 --------------------AKAALEKGASLAPGDSRFTKLIK 111 (356)
T ss_pred --------------------HHHHHHHHHHhCCCCHHHHHHHH
Confidence 66666666666666665555443
No 116
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.27 E-value=3.5e-10 Score=94.84 Aligned_cols=182 Identities=14% Similarity=0.083 Sum_probs=129.0
Q ss_pred CCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cC--CCC----chhhHHHHHHHHhcccHHHHHHHHHHHHHhc--C
Q psy8160 45 PSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-ID--ASP----CTFTKLEGLMFKVNNEYDSALKHLTLCLIDA--S 115 (324)
Q Consensus 45 p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~--~~~----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--~ 115 (324)
|++..+.+.+...|.+|...++|++|.++|.++. .. ..+ ...+...+.++... ++++|+.+|++++... .
T Consensus 29 ~~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~ 107 (282)
T PF14938_consen 29 PDYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA 107 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc
Confidence 3444556677788888888888888888888876 32 111 11222345565555 9999999999998753 2
Q ss_pred CCcccHHHHHHHHHHHHHHh-hcHHHHHHHHHHHHhcCCCCCc--hhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHH
Q psy8160 116 PCTFTKLEVRFHIAHLHEVQ-RKYKTAKDSYEQLLKEDDLPVH--LKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQK 192 (324)
Q Consensus 116 ~~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~ 192 (324)
......+.++..+|.+|... |++++|+++|++++......+. ....++..+|.++.. .++|++|+..|++
T Consensus 108 G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~-------l~~y~~A~~~~e~ 180 (282)
T PF14938_consen 108 GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYAR-------LGRYEEAIEIYEE 180 (282)
T ss_dssp T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-------TT-HHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHH-------hCCHHHHHHHHHH
Confidence 33334567899999999999 9999999999999976421222 225677888888866 5599999999999
Q ss_pred HhhhCCcc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q psy8160 193 SIEADPKS-------GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 193 al~~~~~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 234 (324)
.....-.+ ...++..+.|++..|++..|...+++....+|..
T Consensus 181 ~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 181 VAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 97653222 1456778899999999999999999999999865
No 117
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.24 E-value=3e-10 Score=82.29 Aligned_cols=107 Identities=20% Similarity=0.250 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh-hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc-
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK-ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS- 200 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~- 200 (324)
++++.+|..+...|++++|++.|.+++..+ |++.. ..+++.+|.++.. .+++++|+..+++++..+|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~-------~~~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYA-------QGKYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHh-------hccHHHHHHHHHHHHHHCCCCC
Confidence 568889999999999999999999999887 65422 4588889999977 458999999999999988875
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q psy8160 201 --GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTW 238 (324)
Q Consensus 201 --~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 238 (324)
+.+++.+|.++...|++++|+..+++++...|+++.+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 74 KAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred cccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 57899999999999999999999999999999887654
No 118
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.24 E-value=2.2e-08 Score=89.77 Aligned_cols=223 Identities=9% Similarity=0.049 Sum_probs=157.6
Q ss_pred hhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHh-----ccHHHHHHHHHHHh-cCCCCchhhHH----
Q psy8160 22 LQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVN-----NEYDSALKHLTLCL-IDASPCTFTKL---- 89 (324)
Q Consensus 22 l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~-----~~~~~A~~~~~~al-~~~~~~~~~~~---- 89 (324)
.+.+.+.++ ++|...|..+++.+|+ +...+..+..+.... .+.+.-...|+... ..|.......+
T Consensus 44 rA~ll~kLg~~~eA~~~y~~Li~rNPd---n~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~ 120 (517)
T PF12569_consen 44 RAELLLKLGRKEEAEKIYRELIDRNPD---NYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDF 120 (517)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhccc
Confidence 444444444 9999999999999987 444566666666322 25667778888777 66776544333
Q ss_pred ----------------------------HHHHHHhcccHHHHHHHHHHHHHh---cCC----------CcccHHHHHHHH
Q psy8160 90 ----------------------------EGLMFKVNNEYDSALKHLTLCLID---ASP----------CTFTKLEVRFHI 128 (324)
Q Consensus 90 ----------------------------la~~~~~~~~~~~A~~~~~~~l~~---~~~----------~~~~~~~~~~~l 128 (324)
+-.+|....+..-....++..+.. ... .+....-+++.+
T Consensus 121 ~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~l 200 (517)
T PF12569_consen 121 LEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFL 200 (517)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHH
Confidence 122222222222222222222211 100 111122366888
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
|..|...|++++|+++.+++|... |..+ +.+...|.++-. .|++.+|...++.+-.+|+.+-.+-...+
T Consensus 201 Aqhyd~~g~~~~Al~~Id~aI~ht--Pt~~--ely~~KarilKh-------~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~a 269 (517)
T PF12569_consen 201 AQHYDYLGDYEKALEYIDKAIEHT--PTLV--ELYMTKARILKH-------AGDLKEAAEAMDEARELDLADRYINSKCA 269 (517)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC--CCcH--HHHHHHHHHHHH-------CCCHHHHHHHHHHHHhCChhhHHHHHHHH
Confidence 999999999999999999999999 8874 499999999955 45999999999999999999988888889
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCC--CC-----HHHHH--HhHHHHhhcCCCHHHHHHHH
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEKSE--GN-----ADTWC--SIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~~p--~~-----~~~~~--~lg~~~~~~~~~~~~A~~~~ 259 (324)
..+++.|+.++|...+..-...+. .. -..|+ ..|.+|.+.|+ +..|++.|
T Consensus 270 Ky~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~-~~~ALk~~ 328 (517)
T PF12569_consen 270 KYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGD-YGLALKRF 328 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHH
Confidence 999999999999999987755442 11 12454 57999999999 99999888
No 119
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.24 E-value=5.9e-11 Score=77.07 Aligned_cols=66 Identities=24% Similarity=0.435 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHccCC
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVG-KVHDAFLAYRNSVEKSE 232 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p 232 (324)
+.+|..+|.+++. .+++++|+.+|+++++.+|+++.+|+.+|.++..+| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~-------~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQ-------QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHH-------TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 5689999999977 559999999999999999999999999999999999 79999999999999988
No 120
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.22 E-value=6.2e-09 Score=84.86 Aligned_cols=175 Identities=9% Similarity=-0.005 Sum_probs=135.1
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhh---HHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFT---KLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVR 125 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~---~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 125 (324)
..+..+..|.-+...|+|++|++.|++++ ..|....+. ..+|.++...+++++|+..+++.+...|.++. ...++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~-~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc-hHHHH
Confidence 45578899999999999999999999999 899886665 66899999999999999999999999888764 35789
Q ss_pred HHHHHHHHHhh------------------cHHHHHHHHHHHHhcCCCCCchh-hHHHHHHHHHHHhhh----hhc---cc
Q psy8160 126 FHIAHLHEVQR------------------KYKTAKDSYEQLLKEDDLPVHLK-ADICRQLGWMYHCID----TLG---EK 179 (324)
Q Consensus 126 ~~la~~~~~~~------------------~~~~A~~~~~~al~~~~~~~~~~-~~~~~~l~~~~~~~~----~~~---~~ 179 (324)
+.+|.++...+ ...+|+..|++.+... |++.. .++...+..+..... .++ .+
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--P~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~ 187 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYELSVAEYYTK 187 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998864443 1356889999999999 77643 233333322221100 000 12
Q ss_pred chhHHHHHHHHHHHhhhCCccH---HHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSG---QSLYLLGRCFAAVGKVHDAFLAYRNS 227 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~---~~~~~lg~~~~~~~~~~~A~~~~~~a 227 (324)
.+.+..|+.-++.+++..|+.+ ++++.++..|...|..++|.......
T Consensus 188 ~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 188 RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 5589999999999999888765 88999999999999999998876543
No 121
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.22 E-value=5.8e-09 Score=82.98 Aligned_cols=147 Identities=19% Similarity=0.215 Sum_probs=106.6
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
.+|++.|++++...|..+...++.+.+|.+++..|+++.|+..|++.+ ..|++..+-
T Consensus 22 ~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~---------------------- 79 (203)
T PF13525_consen 22 EEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD---------------------- 79 (203)
T ss_dssp HHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH----------------------
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh----------------------
Confidence 999999999999999988889999999999999999999999999888 777664432
Q ss_pred HHHhcCCCcccHHHHHHHHHHHHH-----------HhhcHHHHHHHHHHHHhcCCCCCchh-hHHHH-------------
Q psy8160 110 CLIDASPCTFTKLEVRFHIAHLHE-----------VQRKYKTAKDSYEQLLKEDDLPVHLK-ADICR------------- 164 (324)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~la~~~~-----------~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~------------- 164 (324)
.+++.+|.++. ..+...+|+..|+..+... |++.. ..+-.
T Consensus 80 -------------~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y--P~S~y~~~A~~~l~~l~~~la~~e 144 (203)
T PF13525_consen 80 -------------YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY--PNSEYAEEAKKRLAELRNRLAEHE 144 (203)
T ss_dssp -------------HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHHH
T ss_pred -------------hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC--cCchHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433 3344567888888888888 76543 12222
Q ss_pred -HHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH---HHHHHHHHHHHHcCCHHHHH
Q psy8160 165 -QLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG---QSLYLLGRCFAAVGKVHDAF 221 (324)
Q Consensus 165 -~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~lg~~~~~~~~~~~A~ 221 (324)
.+|..|+. .+.+..|+..++.+++..|+.+ +++..++.+|..+|..+.|.
T Consensus 145 ~~ia~~Y~~-------~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 145 LYIARFYYK-------RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHC-------TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHH-------cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 23344433 5689999999999999999886 78899999999999988543
No 122
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.22 E-value=3.9e-08 Score=82.17 Aligned_cols=226 Identities=14% Similarity=0.060 Sum_probs=152.4
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHh-cCCCC-chhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Q psy8160 54 HLRLGLMFKVNNEYDSALKHLTLCL-IDASP-CTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHL 131 (324)
Q Consensus 54 ~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~ 131 (324)
+..-+...-.+||++.|=.++.++. ..+++ .......+.+...+|++..|.....+++...|..+ ++......+
T Consensus 121 ~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~----~vlrLa~r~ 196 (400)
T COG3071 121 YLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHP----EVLRLALRA 196 (400)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCCh----HHHHHHHHH
Confidence 4444556677888888888888888 43333 33344468888888888888888888888777776 777777788
Q ss_pred HHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHH---HHhhhhhc-----------------------------cc
Q psy8160 132 HEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWM---YHCIDTLG-----------------------------EK 179 (324)
Q Consensus 132 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~---~~~~~~~~-----------------------------~~ 179 (324)
|...|++.....+..+.-+..-..+ .+..-+-+.++. -..++..| ..
T Consensus 197 y~~~g~~~~ll~~l~~L~ka~~l~~-~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~ 275 (400)
T COG3071 197 YIRLGAWQALLAILPKLRKAGLLSD-EEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIR 275 (400)
T ss_pred HHHhccHHHHHHHHHHHHHccCCCh-HHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHH
Confidence 8888888877777666544321111 111111111111 00000000 01
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.+++++|.+..+++++..- ++.....++ ...-+++..=++..++.+...|++|..+..||.++++.+. |.+|..+|
T Consensus 276 l~~~~~A~~~i~~~Lk~~~-D~~L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~-w~kA~~~l 351 (400)
T COG3071 276 LGDHDEAQEIIEDALKRQW-DPRLCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKL-WGKASEAL 351 (400)
T ss_pred cCChHHHHHHHHHHHHhcc-ChhHHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhH-HHHHHHHH
Confidence 3467777777777776543 233222222 2355677777777888888889999999999999999999 99999998
Q ss_pred ----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhc
Q psy8160 260 ----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTS 290 (324)
Q Consensus 260 ----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~ 290 (324)
..|..+|.++.+.|+..+ |-++++.++.+
T Consensus 352 eaAl~~~~s~~~~~~la~~~~~~g~~~~--A~~~r~e~L~~ 390 (400)
T COG3071 352 EAALKLRPSASDYAELADALDQLGEPEE--AEQVRREALLL 390 (400)
T ss_pred HHHHhcCCChhhHHHHHHHHHHcCChHH--HHHHHHHHHHH
Confidence 778899999999999999 99999999843
No 123
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.22 E-value=1.3e-08 Score=99.57 Aligned_cols=255 Identities=9% Similarity=-0.070 Sum_probs=183.9
Q ss_pred HHHHHHHHHHhccCCCccc--chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCC------chhhHHHHHHHHhcccHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLR--ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASP------CTFTKLEGLMFKVNNEYD 101 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~------~~~~~~la~~~~~~~~~~ 101 (324)
++|...+.+++...|.... ...+...+|.++...|++++|...+.+++ ..... ......+|.++..+|+++
T Consensus 469 ~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~ 548 (903)
T PRK04841 469 EEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQ 548 (903)
T ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHH
Confidence 8999999999986554221 12356778999999999999999999998 42221 123345788999999999
Q ss_pred HHHHHHHHHHHhcCCCc----ccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC-CCchhhHHHHHHHHHHHhhhhh
Q psy8160 102 SALKHLTLCLIDASPCT----FTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDL-PVHLKADICRQLGWMYHCIDTL 176 (324)
Q Consensus 102 ~A~~~~~~~l~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~~~~ 176 (324)
+|...+++++....... .....++..+|.++...|++++|...+++++..... .......++..++.++..
T Consensus 549 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~---- 624 (903)
T PRK04841 549 AAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA---- 624 (903)
T ss_pred HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH----
Confidence 99999999987533221 112234567789999999999999999999875421 111124455667777755
Q ss_pred cccchhHHHHHHHHHHHhhhCCccH---HHHH----HHHHHHHHcCCHHHHHHHHHHHHccCCCCHH----HHHHhHHHH
Q psy8160 177 GEKSHRETLAIHCLQKSIEADPKSG---QSLY----LLGRCFAAVGKVHDAFLAYRNSVEKSEGNAD----TWCSIGNKD 245 (324)
Q Consensus 177 ~~~~~~~~~A~~~~~~al~~~~~~~---~~~~----~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~ 245 (324)
.|++++|...+.++....+... .... .....+...|+.+.|..++.......+.... .+..+|.++
T Consensus 625 ---~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~ 701 (903)
T PRK04841 625 ---RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQ 701 (903)
T ss_pred ---cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHH
Confidence 4589999999999976533221 1111 1224455689999999998887654333322 246789999
Q ss_pred hhcCCCHHHHHHHH-----------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChh
Q psy8160 246 FSNNSNREDYHQAL-----------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCK 295 (324)
Q Consensus 246 ~~~~~~~~~A~~~~-----------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (324)
...|+ +++|+..+ .++..+|.++...|+.++ |...+.+|+++.....
T Consensus 702 ~~~g~-~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~--A~~~L~~Al~la~~~g 765 (903)
T PRK04841 702 ILLGQ-FDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSE--AQRVLLEALKLANRTG 765 (903)
T ss_pred HHcCC-HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHhCccc
Confidence 99999 99998888 467788999999999999 9999999999875543
No 124
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.22 E-value=2.4e-11 Score=78.90 Aligned_cols=67 Identities=13% Similarity=0.232 Sum_probs=59.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcC-CCHHHHHHHHHHHHhhHHHHHHcCCCCcc
Q psy8160 200 SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNN-SNREDYHQALNKYRDLGDFLVINNIPTSN 278 (324)
Q Consensus 200 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~-~~~~~A~~~~~~~~~lg~~~~~~~~~~~~ 278 (324)
++..|..+|.+++..|++++|+..|+++++.+|+++.+|+++|.++...| + +.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~------------------------~~~- 56 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKD------------------------YEE- 56 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTH------------------------HHH-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCcc------------------------HHH-
Confidence 67899999999999999999999999999999999999999999999988 6 445
Q ss_pred hHHHHHHHhhhcCC
Q psy8160 279 NNRQCYNSYSTSIA 292 (324)
Q Consensus 279 ~A~~~~~~al~~~p 292 (324)
|+.+|+++++++|
T Consensus 57 -A~~~~~~al~l~P 69 (69)
T PF13414_consen 57 -AIEDFEKALKLDP 69 (69)
T ss_dssp -HHHHHHHHHHHST
T ss_pred -HHHHHHHHHHcCc
Confidence 7777777777776
No 125
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.21 E-value=1.1e-09 Score=84.80 Aligned_cols=106 Identities=17% Similarity=0.275 Sum_probs=81.4
Q ss_pred cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCch-hhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC
Q psy8160 120 TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHL-KADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP 198 (324)
Q Consensus 120 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 198 (324)
.....++.+|..+...|++++|+.+|++++... |+.. .+.++..+|.++.. .|++++|+.+++++++..|
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~la~~~~~-------~g~~~~A~~~~~~al~~~p 103 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLE--EDPNDRSYILYNMGIIYAS-------NGEHDKALEYYHQALELNP 103 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCc
Confidence 344567888888888888888888888888765 3321 14577888888866 4488888888888888888
Q ss_pred ccHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHccCCCC
Q psy8160 199 KSGQSLYLLGRCFAAVGK--------------VHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 199 ~~~~~~~~lg~~~~~~~~--------------~~~A~~~~~~al~~~p~~ 234 (324)
.++..+..+|.++...|+ +++|++.+++++..+|++
T Consensus 104 ~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 104 KQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred ccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 888888888888888776 577888888888888876
No 126
>KOG2376|consensus
Probab=99.21 E-value=1.3e-07 Score=82.75 Aligned_cols=137 Identities=19% Similarity=0.171 Sum_probs=101.6
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhc--------------------
Q psy8160 55 LRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDA-------------------- 114 (324)
Q Consensus 55 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-------------------- 114 (324)
|.-+.|+++.+..++|+++++ ..++.+.....+.|.+++.+|+|++|+..|+..+...
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~--~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~ 160 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK--GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQ 160 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh--cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh
Confidence 577888999999999999988 4566666788889999999999999999999985322
Q ss_pred -------CCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC-------CCC-Cchh---hHHHHHHHHHHHhhhhh
Q psy8160 115 -------SPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED-------DLP-VHLK---ADICRQLGWMYHCIDTL 176 (324)
Q Consensus 115 -------~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------~~~-~~~~---~~~~~~l~~~~~~~~~~ 176 (324)
|..+....+.+|+.|-++...|+|.+|++.+++++.+. +.. ...+ ..+..+++.++..
T Consensus 161 ~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~---- 236 (652)
T KOG2376|consen 161 VQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL---- 236 (652)
T ss_pred HHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH----
Confidence 22222345688999999999999999999999994431 101 1111 2345566666644
Q ss_pred cccchhHHHHHHHHHHHhhhCCcc
Q psy8160 177 GEKSHRETLAIHCLQKSIEADPKS 200 (324)
Q Consensus 177 ~~~~~~~~~A~~~~~~al~~~~~~ 200 (324)
.|+.++|...|...+..+|.+
T Consensus 237 ---~Gqt~ea~~iy~~~i~~~~~D 257 (652)
T KOG2376|consen 237 ---QGQTAEASSIYVDIIKRNPAD 257 (652)
T ss_pred ---hcchHHHHHHHHHHHHhcCCC
Confidence 448889999998888776654
No 127
>KOG4340|consensus
Probab=99.20 E-value=4.3e-09 Score=84.66 Aligned_cols=250 Identities=14% Similarity=0.060 Sum_probs=184.0
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
..|++....-.+..|. +...+..||.||+...+|..|-.||++.- ..|........-+..+...+.+..|+.....
T Consensus 27 ~DaI~~l~s~~Er~p~---~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~ 103 (459)
T KOG4340|consen 27 ADAIQLLGSELERSPR---SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFL 103 (459)
T ss_pred HHHHHHHHHHHhcCcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 7788888888888863 34468889999999999999999999998 8999888888889999999999999996665
Q ss_pred HHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHH
Q psy8160 110 CLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHC 189 (324)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~ 189 (324)
..+. .--..++...-+-+....+++..+....++. |..-.+....+.|.+.++ .|+++.|++-
T Consensus 104 ~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl------p~en~Ad~~in~gCllyk-------egqyEaAvqk 166 (459)
T KOG4340|consen 104 LLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQL------PSENEADGQINLGCLLYK-------EGQYEAAVQK 166 (459)
T ss_pred hcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhc------cCCCccchhccchheeec-------cccHHHHHHH
Confidence 5432 1111133333355666777777776666554 432236788899988877 5599999999
Q ss_pred HHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc----CCCC-------------------------HHHHHH
Q psy8160 190 LQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK----SEGN-------------------------ADTWCS 240 (324)
Q Consensus 190 ~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~-------------------------~~~~~~ 240 (324)
|+.+++..-.++-.-++++.+++..+++..|++.....++. .|.. .++...
T Consensus 167 FqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNL 246 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNL 246 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999988777653 3332 233444
Q ss_pred hHHHHhhcCCCHHHHHHHH-------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhh
Q psy8160 241 IGNKDFSNNSNREDYHQAL-------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFS 304 (324)
Q Consensus 241 lg~~~~~~~~~~~~A~~~~-------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 304 (324)
-+.++++.++ ++.|.+.+ .++.+++..- ..+++.+ ...-++-.+.++|=-+....|+.++
T Consensus 247 KaAIeyq~~n-~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~--g~~KLqFLL~~nPfP~ETFANlLll 319 (459)
T KOG4340|consen 247 KAAIEYQLRN-YEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTE--GFEKLQFLLQQNPFPPETFANLLLL 319 (459)
T ss_pred hhhhhhhccc-HHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccc--cHHHHHHHHhcCCCChHHHHHHHHH
Confidence 5677889999 99998888 4455554332 2345666 6666777777777444555555444
No 128
>KOG1915|consensus
Probab=99.19 E-value=1.4e-07 Score=80.61 Aligned_cols=206 Identities=12% Similarity=0.002 Sum_probs=154.7
Q ss_pred cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccH-----HHHHHHHHHHH-HHhhcHHHHHHHHHHHHhcC
Q psy8160 79 IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTK-----LEVRFHIAHLH-EVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 79 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~-----~~~~~~la~~~-~~~~~~~~A~~~~~~al~~~ 152 (324)
.+|.+...+...-.+-...|+.+.-.+.|++++...|+..... .-+|.+.+..- ....+.+.+.+.|+.++++-
T Consensus 317 ~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI 396 (677)
T KOG1915|consen 317 KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI 396 (677)
T ss_pred hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 4777777777777777888999999999999998877743211 12333333211 24478899999999999987
Q ss_pred CCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q psy8160 153 DLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSE 232 (324)
Q Consensus 153 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 232 (324)
+......+.+|...+..... ..+...|...+-.|+...|.+.-. -..-.+-..+++++.....|++-++.+|
T Consensus 397 PHkkFtFaKiWlmyA~feIR-------q~~l~~ARkiLG~AIG~cPK~KlF-k~YIelElqL~efDRcRkLYEkfle~~P 468 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIR-------QLNLTGARKILGNAIGKCPKDKLF-KGYIELELQLREFDRCRKLYEKFLEFSP 468 (677)
T ss_pred CcccchHHHHHHHHHHHHHH-------HcccHHHHHHHHHHhccCCchhHH-HHHHHHHHHHhhHHHHHHHHHHHHhcCh
Confidence 22222234555555544433 347888999999999999976533 2223445677899999999999999999
Q ss_pred CCHHHHHHhHHHHhhcCCCHHHHHHHH-------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChh
Q psy8160 233 GNADTWCSIGNKDFSNNSNREDYHQAL-------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCK 295 (324)
Q Consensus 233 ~~~~~~~~lg~~~~~~~~~~~~A~~~~-------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (324)
.+..+|...|.+-..+|+ ++.|...| -.|...-..-...|.++. |...|++.|+..+..+
T Consensus 469 e~c~~W~kyaElE~~Lgd-tdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ek--aR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 469 ENCYAWSKYAELETSLGD-TDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEK--ARALYERLLDRTQHVK 541 (677)
T ss_pred HhhHHHHHHHHHHHHhhh-HHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHH--HHHHHHHHHHhcccch
Confidence 999999999999999999 99998888 455556666667889999 9999999999888765
No 129
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.18 E-value=6.4e-08 Score=80.93 Aligned_cols=211 Identities=14% Similarity=0.060 Sum_probs=166.1
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
+.|-.+..++-+..++. ...+....+.+....||++.|..-..+++ ..|.+.....+...+|...|++.+......+
T Consensus 135 ~~an~yL~eaae~~~~~--~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~ 212 (400)
T COG3071 135 DRANRYLAEAAELAGDD--TLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPK 212 (400)
T ss_pred HHHHHHHHHHhccCCCc--hHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 77888888888885542 23467888889999999999999999999 9999999999999999999999888877766
Q ss_pred HHHhcCCCcc--------------------------------------cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc
Q psy8160 110 CLIDASPCTF--------------------------------------TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151 (324)
Q Consensus 110 ~l~~~~~~~~--------------------------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 151 (324)
.-+..--+.. ..+++...++.-+...|++++|.+..+++++.
T Consensus 213 L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~ 292 (400)
T COG3071 213 LRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR 292 (400)
T ss_pred HHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 5332111110 11234555566667788999999999998877
Q ss_pred CCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q psy8160 152 DDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKS 231 (324)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 231 (324)
. -+. ......+.+- .++...=++..++.+...|++|..+..||..++..+.|.+|..+|+.+++..
T Consensus 293 ~--~D~---~L~~~~~~l~---------~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~ 358 (400)
T COG3071 293 Q--WDP---RLCRLIPRLR---------PGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR 358 (400)
T ss_pred c--cCh---hHHHHHhhcC---------CCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 6 332 2333333222 3377888888999999999999999999999999999999999999999998
Q ss_pred CCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 232 EGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 232 p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
| +...|..+|.++.+.|+ ...|.+++
T Consensus 359 ~-s~~~~~~la~~~~~~g~-~~~A~~~r 384 (400)
T COG3071 359 P-SASDYAELADALDQLGE-PEEAEQVR 384 (400)
T ss_pred C-ChhhHHHHHHHHHHcCC-hHHHHHHH
Confidence 8 46778999999999999 99998876
No 130
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.18 E-value=1.7e-09 Score=83.54 Aligned_cols=106 Identities=14% Similarity=0.178 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCch-hhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc
Q psy8160 121 KLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHL-KADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK 199 (324)
Q Consensus 121 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 199 (324)
....++.+|.++...|++++|+..|++++... |++. .+.++.++|.++.. .+++++|+.++++++.++|.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~--~~~~~~~~~~~~lg~~~~~-------~g~~~eA~~~~~~Al~~~~~ 104 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE--IDPYDRSYILYNIGLIHTS-------NGEHTKALEYYFQALERNPF 104 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--ccchhhHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCcC
Confidence 34677888888888899999999999888776 4322 24578888888866 45888899999999888888
Q ss_pred cHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHccCCCCH
Q psy8160 200 SGQSLYLLGRCFA-------AVGKVH-------DAFLAYRNSVEKSEGNA 235 (324)
Q Consensus 200 ~~~~~~~lg~~~~-------~~~~~~-------~A~~~~~~al~~~p~~~ 235 (324)
....+..+|.++. ..|+++ +|+..|++++..+|.+.
T Consensus 105 ~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 105 LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 8888888888887 667766 66666777778888653
No 131
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.17 E-value=8.2e-10 Score=76.07 Aligned_cols=99 Identities=25% Similarity=0.374 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHH
Q psy8160 124 VRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQS 203 (324)
Q Consensus 124 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 203 (324)
+++.+|.++...|++++|+..+++++... |.+. .++..+|.++.. .+++++|+.++++++...|.++.+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~--~~~~~~~~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~ 70 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--PDNA--DAYYNLAAAYYK-------LGKYEEALEDYEKALELDPDNAKA 70 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--CccH--HHHHHHHHHHHH-------HHHHHHHHHHHHHHHhCCCcchhH
Confidence 46778888888999999999999988887 6653 478888888866 448888999999999888888888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q psy8160 204 LYLLGRCFAAVGKVHDAFLAYRNSVEKSEG 233 (324)
Q Consensus 204 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 233 (324)
+..+|.++...|++++|...+.+++..+|.
T Consensus 71 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 71 YYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 899999999999999999999998887763
No 132
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.17 E-value=6.9e-11 Score=79.93 Aligned_cols=78 Identities=23% Similarity=0.304 Sum_probs=69.8
Q ss_pred chhHHHHHHHHHHHhhhCCc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHH
Q psy8160 180 SHRETLAIHCLQKSIEADPK--SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQ 257 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~ 257 (324)
.++++.|+.+++++++.+|. +...++.+|.|++..|++++|+..+++ ...+|.++..++.+|.|+..+|+ +++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~-y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK-YEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT--HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC-HHHHHH
Confidence 35899999999999999995 567788899999999999999999999 88999999999999999999999 999998
Q ss_pred HH
Q psy8160 258 AL 259 (324)
Q Consensus 258 ~~ 259 (324)
.|
T Consensus 80 ~l 81 (84)
T PF12895_consen 80 AL 81 (84)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 133
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.16 E-value=5e-10 Score=81.13 Aligned_cols=95 Identities=13% Similarity=0.123 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHhHHHHhhcCCCHHHHHHHH--------------HHHHh
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN---ADTWCSIGNKDFSNNSNREDYHQAL--------------NKYRD 264 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~~A~~~~--------------~~~~~ 264 (324)
++++.+|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|+ +++|+..| .++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGK-YADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 445556666666666666666666666555544 3455556666666666 66666555 34666
Q ss_pred hHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhh
Q psy8160 265 LGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINN 299 (324)
Q Consensus 265 lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 299 (324)
+|.++...+++++ |+..|+++++..|+++.+..
T Consensus 82 ~~~~~~~~~~~~~--A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 82 LGMSLQELGDKEK--AKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHhCChHH--HHHHHHHHHHHCcCChhHHH
Confidence 6777777777888 99999999999999876543
No 134
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.16 E-value=2.9e-08 Score=97.19 Aligned_cols=251 Identities=12% Similarity=-0.008 Sum_probs=180.4
Q ss_pred HHHHHHHHHHhccCCCc------ccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCch-----hhHHHHHHHHhcc
Q psy8160 31 IKAIKTFQQLLYVDPSY------LRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCT-----FTKLEGLMFKVNN 98 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~-----~~~~la~~~~~~~ 98 (324)
++|...+..+....+.. .....+...+|.++...|+++.|..++++++ ..+.... +...+|.++...|
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 88888888876543221 1123455667889999999999999999998 5444332 3345788889999
Q ss_pred cHHHHHHHHHHHHHhcCCCc--ccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC---CC-chhhHHHHHHHHHHHh
Q psy8160 99 EYDSALKHLTLCLIDASPCT--FTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDL---PV-HLKADICRQLGWMYHC 172 (324)
Q Consensus 99 ~~~~A~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~-~~~~~~~~~l~~~~~~ 172 (324)
++++|...+++++....... .....+...+|.++...|+++.|...+++++..... +. .....++..+|.++..
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 585 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE 585 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 99999999999986543322 123346678899999999999999999999875311 11 1112345566777755
Q ss_pred hhhhcccchhHHHHHHHHHHHhhhCCc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHH----
Q psy8160 173 IDTLGEKSHRETLAIHCLQKSIEADPK-----SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN---ADTWCS---- 240 (324)
Q Consensus 173 ~~~~~~~~~~~~~A~~~~~~al~~~~~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~---- 240 (324)
.|++++|...+.+++..... ....+..+|.++...|++++|...+.++..+.+.. ...+..
T Consensus 586 -------~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~ 658 (903)
T PRK04841 586 -------WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKV 658 (903)
T ss_pred -------hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHH
Confidence 45999999999999875321 24566778999999999999999999997653322 111111
Q ss_pred hHHHHhhcCCCHHHHHHHH---------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcC
Q psy8160 241 IGNKDFSNNSNREDYHQAL---------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSI 291 (324)
Q Consensus 241 lg~~~~~~~~~~~~A~~~~---------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~ 291 (324)
....+...|+ .+.|...+ ..+..+|.++...|++++ |...+++++...
T Consensus 659 ~~~~~~~~g~-~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~--A~~~l~~al~~~ 721 (903)
T PRK04841 659 RLIYWQMTGD-KEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDE--AEIILEELNENA 721 (903)
T ss_pred HHHHHHHCCC-HHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHH
Confidence 2244455788 88888776 225688999999999999 999999998863
No 135
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.16 E-value=4.8e-09 Score=78.83 Aligned_cols=121 Identities=21% Similarity=0.201 Sum_probs=88.7
Q ss_pred cccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCc-hhhHHHHHHHHHHHhhhh
Q psy8160 97 NNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVH-LKADICRQLGWMYHCIDT 175 (324)
Q Consensus 97 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~l~~~~~~~~~ 175 (324)
.++...+...++..+...|.+.. ...+.+.+|.++...|++++|+..|+.++... |+. ....+..+++.++..
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~y-a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~--~d~~l~~~a~l~LA~~~~~--- 97 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPY-AALAALQLAKAAYEQGDYDEAKAALEKALANA--PDPELKPLARLRLARILLQ--- 97 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHH---
Confidence 56666666667777766665532 23567778888888888888888888888766 332 335577777888766
Q ss_pred hcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8160 176 LGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSV 228 (324)
Q Consensus 176 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 228 (324)
.+++++|+..++. +...+..+.++..+|.++...|++++|+..|++|+
T Consensus 98 ----~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 98 ----QGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred ----cCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 4588888888866 34445566778888888888888888888888874
No 136
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.16 E-value=2.4e-10 Score=73.14 Aligned_cols=64 Identities=23% Similarity=0.388 Sum_probs=56.9
Q ss_pred HHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q psy8160 165 QLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA 235 (324)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 235 (324)
.+|..++. .|++++|+..|+++++.+|.++.+|+.+|.++..+|++++|+..|+++++.+|++|
T Consensus 2 ~~a~~~~~-------~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQ-------QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHH-------CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHH-------cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 45666666 56999999999999999999999999999999999999999999999999999875
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.15 E-value=7.8e-09 Score=88.53 Aligned_cols=150 Identities=18% Similarity=0.210 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIA 129 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la 129 (324)
..++|..+..++..|+++.|+..++..+ ..|+|..+....+.++...++..+|.+.+++++...|... -+..++|
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~----~l~~~~a 381 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSP----LLQLNLA 381 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc----HHHHHHH
Confidence 3456666777777777777777777666 6677766666666666666666666666666666666654 4566666
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHH
Q psy8160 130 HLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGR 209 (324)
Q Consensus 130 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~ 209 (324)
..+...|++.+|+..++..+..+ |++ +..|..++..|-. .| +...+....+.
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~--p~d--p~~w~~LAqay~~---~g---------------------~~~~a~~A~AE 433 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFND--PED--PNGWDLLAQAYAE---LG---------------------NRAEALLARAE 433 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcC--CCC--chHHHHHHHHHHH---hC---------------------chHHHHHHHHH
Confidence 66666666666666666666666 655 3366666666632 12 22233344455
Q ss_pred HHHHcCCHHHHHHHHHHHHccCC
Q psy8160 210 CFAAVGKVHDAFLAYRNSVEKSE 232 (324)
Q Consensus 210 ~~~~~~~~~~A~~~~~~al~~~p 232 (324)
.++..|++++|+..+..+.+...
T Consensus 434 ~~~~~G~~~~A~~~l~~A~~~~~ 456 (484)
T COG4783 434 GYALAGRLEQAIIFLMRASQQVK 456 (484)
T ss_pred HHHhCCCHHHHHHHHHHHHHhcc
Confidence 66666666666666666665553
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.15 E-value=2.5e-09 Score=80.40 Aligned_cols=115 Identities=17% Similarity=0.116 Sum_probs=74.0
Q ss_pred HhhcHHHHHHHHHHHHhcCCCCCch-hhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc---HHHHHHHHH
Q psy8160 134 VQRKYKTAKDSYEQLLKEDDLPVHL-KADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS---GQSLYLLGR 209 (324)
Q Consensus 134 ~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~lg~ 209 (324)
..++...+...++..+... |+.. ...+...+|.+++. .|++++|+..|++++...|+. +.+.+.+|.
T Consensus 23 ~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~-------~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYE-------QGDYDEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 4667777777777777766 5542 23455566666655 447777777777777766443 246667777
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 210 CFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 210 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
++...|++++|+..++. +...+-.+.++..+|+++...|+ +++|+..|
T Consensus 94 ~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~-~~~A~~~y 141 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGD-YDEARAAY 141 (145)
T ss_pred HHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCC-HHHHHHHH
Confidence 77777777777777755 23334445566666777777777 66666554
No 139
>KOG2376|consensus
Probab=99.15 E-value=2.2e-08 Score=87.54 Aligned_cols=227 Identities=17% Similarity=0.125 Sum_probs=152.5
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLC 110 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 110 (324)
++|++...+++...|+. ..+...--.+.++.+.|++|++..+.-..+.......+..+-+.+..+..++|++.++ .
T Consensus 29 e~a~k~~~Kil~~~pdd---~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~-~ 104 (652)
T KOG2376|consen 29 EEAVKTANKILSIVPDD---EDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK-G 104 (652)
T ss_pred HHHHHHHHHHHhcCCCc---HhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh-c
Confidence 99999999999999863 3355666678889999999996655433222222233567889999999999999887 2
Q ss_pred HHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHH
Q psy8160 111 LIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCL 190 (324)
Q Consensus 111 l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~ 190 (324)
++ +.+. -+....|.++..+++|++|++.|+.++..+ .++.+ .......+-.. ---.+ . .
T Consensus 105 ~~--~~~~----~ll~L~AQvlYrl~~ydealdiY~~L~kn~--~dd~d--~~~r~nl~a~~---------a~l~~-~-~ 163 (652)
T KOG2376|consen 105 LD--RLDD----KLLELRAQVLYRLERYDEALDIYQHLAKNN--SDDQD--EERRANLLAVA---------AALQV-Q-L 163 (652)
T ss_pred cc--ccch----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CchHH--HHHHHHHHHHH---------HhhhH-H-H
Confidence 22 2221 356667899999999999999999988776 55433 33333332211 11111 1 4
Q ss_pred HHHhhhCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCH-HHHHHHH-HHHHhhHH
Q psy8160 191 QKSIEADPK-SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNR-EDYHQAL-NKYRDLGD 267 (324)
Q Consensus 191 ~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~-~~A~~~~-~~~~~lg~ 267 (324)
.+.....|. +.+.+|+.+.++...|+|.+|++.+++|+.+.... +..+++- ++-..-+ .+...|+.
T Consensus 164 ~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~-----------l~~~d~~eEeie~el~~IrvQlay 232 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREK-----------LEDEDTNEEEIEEELNPIRVQLAY 232 (652)
T ss_pred HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh-----------hcccccchhhHHHHHHHHHHHHHH
Confidence 444555554 56889999999999999999999999996543210 0111100 1111111 45566788
Q ss_pred HHHHcCCCCcchHHHHHHHhhhcCCChh
Q psy8160 268 FLVINNIPTSNNNRQCYNSYSTSIASCK 295 (324)
Q Consensus 268 ~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (324)
++..+|+..+ |...|...++.+|-|.
T Consensus 233 VlQ~~Gqt~e--a~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 233 VLQLQGQTAE--ASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHhcchHH--HHHHHHHHHHhcCCCc
Confidence 8888888888 9999999988887765
No 140
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.15 E-value=2.9e-10 Score=76.83 Aligned_cols=83 Identities=33% Similarity=0.488 Sum_probs=67.9
Q ss_pred hhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHc
Q psy8160 135 QRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAV 214 (324)
Q Consensus 135 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 214 (324)
+|+++.|+..|+++++.. |.+.....++.+|.+++. .+++++|+..+++ ...+|.++...+.+|.|+..+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~--~~~~~~~~~~~la~~~~~-------~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l 71 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELD--PTNPNSAYLYNLAQCYFQ-------QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKL 71 (84)
T ss_dssp TT-HHHHHHHHHHHHHHH--CGTHHHHHHHHHHHHHHH-------TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHH-------CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHh
Confidence 578999999999999888 643245578888999988 5589999999999 778888888888889999999
Q ss_pred CCHHHHHHHHHHH
Q psy8160 215 GKVHDAFLAYRNS 227 (324)
Q Consensus 215 ~~~~~A~~~~~~a 227 (324)
|++++|+..++++
T Consensus 72 ~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 72 GKYEEAIKALEKA 84 (84)
T ss_dssp T-HHHHHHHHHHH
T ss_pred CCHHHHHHHHhcC
Confidence 9999999998875
No 141
>KOG3785|consensus
Probab=99.13 E-value=3.4e-08 Score=81.43 Aligned_cols=237 Identities=11% Similarity=0.014 Sum_probs=147.5
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchh------------------------
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTF------------------------ 86 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~------------------------ 86 (324)
++|+..|.-+...+. .+.++...|+.|++..|.|.+|...-.++-..|-..+.
T Consensus 74 ~~Al~~Y~~~~~~~~---~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~ 150 (557)
T KOG3785|consen 74 EEALNVYTFLMNKDD---APAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT 150 (557)
T ss_pred HHHHHHHHHHhccCC---CCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh
Confidence 999999998887442 24678999999999999999998876655322211111
Q ss_pred ---hHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHH
Q psy8160 87 ---TKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADIC 163 (324)
Q Consensus 87 ---~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 163 (324)
...+|.+....-.|.+|+..|++++..+|.-. .+-..+|.||..+.-++.+.+.+.--+... |++.. +.
T Consensus 151 ~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~----alNVy~ALCyyKlDYydvsqevl~vYL~q~--pdSti--A~ 222 (557)
T KOG3785|consen 151 LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYI----ALNVYMALCYYKLDYYDVSQEVLKVYLRQF--PDSTI--AK 222 (557)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhh----hhHHHHHHHHHhcchhhhHHHHHHHHHHhC--CCcHH--HH
Confidence 11145555566667777777777776665543 445566777777777777777776666666 66533 44
Q ss_pred HHHHHHHHhhhhhcccchhHHHHHHHHHHHhhh-C---Cc----------------------------cHHHHHHHHHHH
Q psy8160 164 RQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA-D---PK----------------------------SGQSLYLLGRCF 211 (324)
Q Consensus 164 ~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~---~~----------------------------~~~~~~~lg~~~ 211 (324)
...+...++.- .|+. |..-....... + |. -|++..+|...|
T Consensus 223 NLkacn~fRl~-----ngr~--ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYy 295 (557)
T KOG3785|consen 223 NLKACNLFRLI-----NGRT--AEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYY 295 (557)
T ss_pred HHHHHHHhhhh-----ccch--hHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeee
Confidence 44443333311 1122 22222222111 1 10 025666777778
Q ss_pred HHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHH-------HHHH-------------------------
Q psy8160 212 AAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDY-------HQAL------------------------- 259 (324)
Q Consensus 212 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A-------~~~~------------------------- 259 (324)
..+++.++|+.... +++|..|.-+..-|.++...|+ -... .+.|
T Consensus 296 L~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQ-e~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL 371 (557)
T KOG3785|consen 296 LNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQ-ETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFL 371 (557)
T ss_pred cccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhh-hcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHH
Confidence 88888888887663 5788888777777777777766 3322 2222
Q ss_pred ----------------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcC
Q psy8160 260 ----------------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSI 291 (324)
Q Consensus 260 ----------------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~ 291 (324)
...++++..+...|++.+ |.+.|-+....+
T Consensus 372 ~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~e--aEelf~~is~~~ 423 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVE--AEELFIRISGPE 423 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHH--HHHHHhhhcChh
Confidence 444678888888888888 888877665433
No 142
>KOG1915|consensus
Probab=99.13 E-value=3.9e-07 Score=78.01 Aligned_cols=144 Identities=14% Similarity=0.046 Sum_probs=98.9
Q ss_pred HHHhhhhccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCC
Q psy8160 6 QKNLVEGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDAS 82 (324)
Q Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~ 82 (324)
+.+|-.+..+-..+...++...... ..|.+.|+++|..+- .+..++...+.+-.+......|...+.+|+ +-|.
T Consensus 63 Ed~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~---r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR 139 (677)
T KOG1915|consen 63 EDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDY---RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR 139 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc---ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch
Confidence 3444444555555555555544444 889999999998883 456688888888888889999999999999 8888
Q ss_pred CchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcc----------------------------cHHHHHHHHHHHHHH
Q psy8160 83 PCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTF----------------------------TKLEVRFHIAHLHEV 134 (324)
Q Consensus 83 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~----------------------------~~~~~~~~la~~~~~ 134 (324)
-..+++--..+-...|+...|...|++-+.-.|+..- .+...|...+..-..
T Consensus 140 VdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k 219 (677)
T KOG1915|consen 140 VDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEK 219 (677)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHh
Confidence 8877777666666778888888888777766555321 011244444555556
Q ss_pred hhcHHHHHHHHHHHHhcC
Q psy8160 135 QRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 135 ~~~~~~A~~~~~~al~~~ 152 (324)
.|+...|...|.++++.-
T Consensus 220 ~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 220 HGNVALARSVYERAIEFL 237 (677)
T ss_pred cCcHHHHHHHHHHHHHHh
Confidence 666667777777776554
No 143
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.13 E-value=1.1e-09 Score=91.34 Aligned_cols=224 Identities=15% Similarity=0.059 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH 130 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~ 130 (324)
.+..+.+.+++..+|+++..+..... ..+....+...++..+...++.+.++..++..+...... ....+....|.
T Consensus 35 ~e~~~~~~Rs~iAlg~~~~vl~ei~~--~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~--~~~~~~~~~A~ 110 (290)
T PF04733_consen 35 LERDFYQYRSYIALGQYDSVLSEIKK--SSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGE--SNEIVQLLAAT 110 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHS-T--TSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS-----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHHHHhcc--CCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhcccc--ccHHHHHHHHH
Confidence 34455556666666665544433221 122223333444554444444445554444333221111 11122333355
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHH
Q psy8160 131 LHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRC 210 (324)
Q Consensus 131 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~ 210 (324)
++...|++++|+..+.+. .+.+ +....-.++.. +++++.|.+.++...+.++++.-+....+++
T Consensus 111 i~~~~~~~~~AL~~l~~~-------~~lE--~~al~Vqi~L~-------~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv 174 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG-------GSLE--LLALAVQILLK-------MNRPDLAEKELKNMQQIDEDSILTQLAEAWV 174 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT-------TCHH--HHHHHHHHHHH-------TT-HHHHHHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcc-------Cccc--HHHHHHHHHHH-------cCCHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 555556666555554332 1112 33333334433 3366666666666655555444333333444
Q ss_pred HHHcC--CHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhh
Q psy8160 211 FAAVG--KVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYS 288 (324)
Q Consensus 211 ~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al 288 (324)
.+..| ++.+|.-.|+...+..+.++..+..++.++..+|+ +++ |.+.+++++
T Consensus 175 ~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~------------------------~~e--Ae~~L~~al 228 (290)
T PF04733_consen 175 NLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGH------------------------YEE--AEELLEEAL 228 (290)
T ss_dssp HHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-------------------------HHH--HHHHHHHHC
T ss_pred HHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCC------------------------HHH--HHHHHHHHH
Confidence 44433 35666666666555555555555555555555555 666 778888899
Q ss_pred hcCCChhhhhhchhhhccCCh---hhHHHHHHHHh
Q psy8160 289 TSIASCKHINNNKDFSNNSNR---EDYHQALNKYR 320 (324)
Q Consensus 289 ~~~p~~~~~~~~l~~~~~~~~---~~~~~a~~~~~ 320 (324)
+.+|++|....|+........ ....+.++.++
T Consensus 229 ~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 229 EKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp CC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 999999998888766544222 22444554443
No 144
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.13 E-value=1.5e-09 Score=74.71 Aligned_cols=96 Identities=21% Similarity=0.256 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHL 131 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~ 131 (324)
+++.+|.++...|++++|+..+++++ ..|.+..++..+|.++...+++++|++.+++++...|... .++..+|.+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~ 77 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA----KAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch----hHHHHHHHH
Confidence 57889999999999999999999999 8888888888899999999999999999999998877765 788999999
Q ss_pred HHHhhcHHHHHHHHHHHHhcC
Q psy8160 132 HEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 132 ~~~~~~~~~A~~~~~~al~~~ 152 (324)
+...|++++|...+.+++...
T Consensus 78 ~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 78 YYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHHHhHHHHHHHHHHHHccC
Confidence 999999999999999998776
No 145
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=5e-09 Score=84.99 Aligned_cols=124 Identities=15% Similarity=0.074 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhccc
Q psy8160 100 YDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEK 179 (324)
Q Consensus 100 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 179 (324)
.+.-+.-.+.-+..+|.+. +-|..||.+|..+|++..|...|.+++.+. |++ ++.+..+|.+++....
T Consensus 138 ~~~l~a~Le~~L~~nP~d~----egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--g~n--~~~~~g~aeaL~~~a~---- 205 (287)
T COG4235 138 MEALIARLETHLQQNPGDA----EGWDLLGRAYMALGRASDALLAYRNALRLA--GDN--PEILLGLAEALYYQAG---- 205 (287)
T ss_pred HHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhcchhHHHHHHHHHHHhC--CCC--HHHHHHHHHHHHHhcC----
Confidence 4445555666777888876 889999999999999999999999999999 887 5588888888866432
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA 235 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 235 (324)
.....++...+++++..+|.+..+.+.||..++..|+|.+|+..++..++..|.+.
T Consensus 206 ~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 206 QQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred CcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 33677899999999999999999999999999999999999999999999887653
No 146
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.10 E-value=2.4e-10 Score=73.20 Aligned_cols=65 Identities=15% Similarity=0.306 Sum_probs=57.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHH
Q psy8160 205 YLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCY 284 (324)
Q Consensus 205 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~ 284 (324)
+.+|..++..|++++|+..|++++..+|+++++|+.+|.++...|+ +++ |+..|
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~------------------------~~~--A~~~~ 54 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGR------------------------YDE--ALAYY 54 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-------------------------HHH--HHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC------------------------HHH--HHHHH
Confidence 4689999999999999999999999999999999999999998888 555 78888
Q ss_pred HHhhhcCCChh
Q psy8160 285 NSYSTSIASCK 295 (324)
Q Consensus 285 ~~al~~~p~~~ 295 (324)
+++++.+|++|
T Consensus 55 ~~a~~~~P~~p 65 (65)
T PF13432_consen 55 ERALELDPDNP 65 (65)
T ss_dssp HHHHHHSTT-H
T ss_pred HHHHHHCcCCC
Confidence 89999999876
No 147
>PRK11906 transcriptional regulator; Provisional
Probab=99.09 E-value=1.7e-08 Score=86.96 Aligned_cols=160 Identities=13% Similarity=0.073 Sum_probs=127.3
Q ss_pred HHHHHHHHHhh---cHHHHHHHHHHHH---hcCCCCCchhhHHHHHHHHHHHhhhhhcc--cchhHHHHHHHHHHHhhhC
Q psy8160 126 FHIAHLHEVQR---KYKTAKDSYEQLL---KEDDLPVHLKADICRQLGWMYHCIDTLGE--KSHRETLAIHCLQKSIEAD 197 (324)
Q Consensus 126 ~~la~~~~~~~---~~~~A~~~~~~al---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~A~~~~~~al~~~ 197 (324)
+..|..+...+ ..+.|+.+|.+++ .++ |.. +.++..+++++......|. ......+|....+++++++
T Consensus 259 ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ld--p~~--a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld 334 (458)
T PRK11906 259 MLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQ--TLK--TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT 334 (458)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHhhcccCC--ccc--HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC
Confidence 55565554443 4678899999999 778 877 6699999999976543332 3457788999999999999
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH------------HHHHhh
Q psy8160 198 PKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL------------NKYRDL 265 (324)
Q Consensus 198 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~------------~~~~~l 265 (324)
|.++.++..+|.+....++++.|+..|++|+.++|+.+.+|+..|.+..-.|+ .++|+... ..-..+
T Consensus 335 ~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~-~~~a~~~i~~alrLsP~~~~~~~~~~ 413 (458)
T PRK11906 335 TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK-IEEARICIDKSLQLEPRRRKAVVIKE 413 (458)
T ss_pred CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC-HHHHHHHHHHHhccCchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 99999888 112222
Q ss_pred HH-HHHHcCCCCcchHHHHHHHhhhcCCC
Q psy8160 266 GD-FLVINNIPTSNNNRQCYNSYSTSIAS 293 (324)
Q Consensus 266 g~-~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (324)
-. .|... -.++ |+..|-+-.+....
T Consensus 414 ~~~~~~~~-~~~~--~~~~~~~~~~~~~~ 439 (458)
T PRK11906 414 CVDMYVPN-PLKN--NIKLYYKETESESH 439 (458)
T ss_pred HHHHHcCC-chhh--hHHHHhhccccccc
Confidence 22 44443 3677 89888876665443
No 148
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.7e-09 Score=87.58 Aligned_cols=112 Identities=17% Similarity=0.243 Sum_probs=94.9
Q ss_pred hHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCC--HHHHHHHH
Q psy8160 182 RETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSN--REDYHQAL 259 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~--~~~A~~~~ 259 (324)
..+.-+.-++..+..+|++.+.|..||.+|+.+|++..|...|++|+++.|++++.+..+|.+++..... ..++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 5777888899999999999999999999999999999999999999999999999999999887654331 34455555
Q ss_pred -----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChh
Q psy8160 260 -----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCK 295 (324)
Q Consensus 260 -----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (324)
.+.+.||..+...|++.+ |+..++..++..|.+.
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~--A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAE--AAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHH--HHHHHHHHHhcCCCCC
Confidence 777888888888888888 8888888888777654
No 149
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.06 E-value=9.2e-09 Score=92.61 Aligned_cols=135 Identities=10% Similarity=-0.004 Sum_probs=111.2
Q ss_pred CCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcC--------CHHHHHHHHHH
Q psy8160 155 PVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVG--------KVHDAFLAYRN 226 (324)
Q Consensus 155 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~--------~~~~A~~~~~~ 226 (324)
|.+..+..++..|+-+..... .+....|+.+|+++++++|+++.++-.++.++.... +...+....++
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~----~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGD----AKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 555556667777766644221 336889999999999999999999999888876542 24456666777
Q ss_pred HHcc--CCCCHHHHHHhHHHHhhcCCCHHHHHHHH----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCCh
Q psy8160 227 SVEK--SEGNADTWCSIGNKDFSNNSNREDYHQAL----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASC 294 (324)
Q Consensus 227 al~~--~p~~~~~~~~lg~~~~~~~~~~~~A~~~~----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (324)
++.+ +|.++.++..+|..+...|+ +++|...+ .+|..+|.++...|++++ |++.|++|+.++|.+
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~-~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~e--A~~~~~~A~~L~P~~ 486 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGK-TDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRL--AADAYSTAFNLRPGE 486 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHH--HHHHHHHHHhcCCCC
Confidence 6664 78888999999999999999 99999999 789999999999999999 999999999999998
Q ss_pred hh
Q psy8160 295 KH 296 (324)
Q Consensus 295 ~~ 296 (324)
|.
T Consensus 487 pt 488 (517)
T PRK10153 487 NT 488 (517)
T ss_pred ch
Confidence 85
No 150
>PRK15331 chaperone protein SicA; Provisional
Probab=99.05 E-value=1.3e-09 Score=80.85 Aligned_cols=77 Identities=10% Similarity=-0.070 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 182 RETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
++++|..+|+-....+|.+++.|..||.|+...++|++|+..|..+..+++++|...+..|.||..+|+ ...|+.+|
T Consensus 52 k~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~-~~~A~~~f 128 (165)
T PRK15331 52 RLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK-AAKARQCF 128 (165)
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC-HHHHHHHH
Confidence 555555555555555555555555555555555555555555555555555555555555555555555 44444443
No 151
>KOG4340|consensus
Probab=99.05 E-value=1.3e-08 Score=81.92 Aligned_cols=202 Identities=11% Similarity=0.024 Sum_probs=154.5
Q ss_pred HHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHH
Q psy8160 62 KVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKT 140 (324)
Q Consensus 62 ~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 140 (324)
++..+|+.|++++..-. ..|.+......+|.+|....+|..|..+|++.-...|... .-.+..+..+.+.+.+..
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~----qYrlY~AQSLY~A~i~AD 96 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELE----QYRLYQAQSLYKACIYAD 96 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHH----HHHHHHHHHHHHhcccHH
Confidence 67789999999999888 8898989999999999999999999999999987766643 344455778888899999
Q ss_pred HHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC--ccHHHHHHHHHHHHHcCCHH
Q psy8160 141 AKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP--KSGQSLYLLGRCFAAVGKVH 218 (324)
Q Consensus 141 A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~lg~~~~~~~~~~ 218 (324)
|+.......+. |. ....+...-+-+.+. .+++..+....+ .-| ++++...+.|-+.++.|+++
T Consensus 97 ALrV~~~~~D~---~~-L~~~~lqLqaAIkYs-------e~Dl~g~rsLve----Qlp~en~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 97 ALRVAFLLLDN---PA-LHSRVLQLQAAIKYS-------EGDLPGSRSLVE----QLPSENEADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHHHHHhcCC---HH-HHHHHHHHHHHHhcc-------cccCcchHHHHH----hccCCCccchhccchheeeccccHH
Confidence 88877665432 21 222222222222222 224444444443 334 56788899999999999999
Q ss_pred HHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH---------------------------------------
Q psy8160 219 DAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL--------------------------------------- 259 (324)
Q Consensus 219 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~--------------------------------------- 259 (324)
.|++-|+.|++..--+|-.-++++.++++.++ +..|++..
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniALaHy~~~q-yasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLALAHYSSRQ-YASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHHhhhh-HHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 99999999999999999999999999999999 99999887
Q ss_pred -HHHHhhHHHHHHcCCCCcchHHHHHH
Q psy8160 260 -NKYRDLGDFLVINNIPTSNNNRQCYN 285 (324)
Q Consensus 260 -~~~~~lg~~~~~~~~~~~~~A~~~~~ 285 (324)
+++...+.++.+.++++. |.+.+.
T Consensus 241 ~eAfNLKaAIeyq~~n~eA--A~eaLt 265 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEA--AQEALT 265 (459)
T ss_pred HHHhhhhhhhhhhcccHHH--HHHHhh
Confidence 455556677888888888 776654
No 152
>KOG1941|consensus
Probab=99.02 E-value=3.7e-08 Score=81.40 Aligned_cols=227 Identities=14% Similarity=0.053 Sum_probs=111.5
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHh--cCCCCchh--hHHHHHHHHhcccHHHHHHHHHHHHHhcCC--CcccHHHHHHH
Q psy8160 54 HLRLGLMFKVNNEYDSALKHLTLCL--IDASPCTF--TKLEGLMFKVNNEYDSALKHLTLCLIDASP--CTFTKLEVRFH 127 (324)
Q Consensus 54 ~~~lg~~~~~~~~~~~A~~~~~~al--~~~~~~~~--~~~la~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~~~~~ 127 (324)
+..-|.-.+...++++|+..+.+.+ .+....++ +..+......+|.|++++.+--..+..... +.....+++.+
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~ln 88 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLN 88 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555 22111111 111344555555555555543333222111 11122345556
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhcCCCCC-chhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH-----
Q psy8160 128 IAHLHEVQRKYKTAKDSYEQLLKEDDLPV-HLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG----- 201 (324)
Q Consensus 128 la~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~----- 201 (324)
++..+...-++.+++.+-+-.+...+... .....+..-+|..+.. .+.++++++.|++++.....+.
T Consensus 89 lar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlg-------ls~fq~~Lesfe~A~~~A~~~~D~~LE 161 (518)
T KOG1941|consen 89 LARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLG-------LSVFQKALESFEKALRYAHNNDDAMLE 161 (518)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhh-------HHHHHHHHHHHHHHHHHhhccCCceee
Confidence 66666666666666655555444432111 1112233334444433 3356666666666655433222
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----------HHHHHHhHHHHhhcCCCHHHHHHHH-----------
Q psy8160 202 -QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN----------ADTWCSIGNKDFSNNSNREDYHQAL----------- 259 (324)
Q Consensus 202 -~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----------~~~~~~lg~~~~~~~~~~~~A~~~~----------- 259 (324)
.++..||..+-...++++|+-+..+|.++-... ..+.+.++..+..+|. .-+|.++.
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~-LgdA~e~C~Ea~klal~~G 240 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGR-LGDAMECCEEAMKLALQHG 240 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHHHhC
Confidence 445566666666666666666666665543221 2234555666666666 66665555
Q ss_pred ------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhc
Q psy8160 260 ------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTS 290 (324)
Q Consensus 260 ------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~ 290 (324)
.....+|++|...|+.+. |..-|+.|...
T Consensus 241 dra~~arc~~~~aDIyR~~gd~e~--af~rYe~Am~~ 275 (518)
T KOG1941|consen 241 DRALQARCLLCFADIYRSRGDLER--AFRRYEQAMGT 275 (518)
T ss_pred ChHHHHHHHHHHHHHHHhcccHhH--HHHHHHHHHHH
Confidence 334456666666666666 66666666543
No 153
>KOG0543|consensus
Probab=99.02 E-value=2.7e-09 Score=89.59 Aligned_cols=112 Identities=11% Similarity=0.041 Sum_probs=90.5
Q ss_pred HHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc-------H--------HHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8160 162 ICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS-------G--------QSLYLLGRCFAAVGKVHDAFLAYRN 226 (324)
Q Consensus 162 ~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-------~--------~~~~~lg~~~~~~~~~~~A~~~~~~ 226 (324)
.....|..+++ .+++..|..-|++++..-+.. . .++.+++.|+..+++|..|+.++.+
T Consensus 210 ~~ke~Gn~~fK-------~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~k 282 (397)
T KOG0543|consen 210 RKKERGNVLFK-------EGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNK 282 (397)
T ss_pred HHHHhhhHHHh-------hchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHH
Confidence 44455666666 447888888888876543211 1 4688999999999999999999999
Q ss_pred HHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhcc
Q psy8160 227 SVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNN 306 (324)
Q Consensus 227 al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 306 (324)
+|.++|+|..++++.|.++..+|+ ++. |+..|++|++++|+|..++..+..+..
T Consensus 283 vLe~~~~N~KALyRrG~A~l~~~e------------------------~~~--A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 283 VLELDPNNVKALYRRGQALLALGE------------------------YDL--ARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHhcCCCchhHHHHHHHHHHhhcc------------------------HHH--HHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 999999999999999999888888 666 888999999999999988888766544
No 154
>KOG2047|consensus
Probab=99.02 E-value=6.1e-07 Score=79.50 Aligned_cols=137 Identities=12% Similarity=0.233 Sum_probs=102.8
Q ss_pred chhHHHHHHHHHHHhh-hCCccH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----HHHHHHhHHHHhhcC
Q psy8160 180 SHRETLAIHCLQKSIE-ADPKSG-----QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN----ADTWCSIGNKDFSNN 249 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~-~~~~~~-----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~ 249 (324)
.++..+-+..|.+|+. .+|..+ ..|..+|..|...|+.+.|...|++++...=.. ..+|..-|..-....
T Consensus 360 e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~ 439 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHE 439 (835)
T ss_pred cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhh
Confidence 3367777888888864 566543 789999999999999999999999998765322 567888888888888
Q ss_pred CCHHHHHHHH-----------------------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhc
Q psy8160 250 SNREDYHQAL-----------------------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNN 300 (324)
Q Consensus 250 ~~~~~A~~~~-----------------------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 300 (324)
+ ++.|.+.. .+|..++.+.+..|-++. -...|++.+++---.|++--|
T Consensus 440 ~-~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfes--tk~vYdriidLriaTPqii~N 516 (835)
T KOG2047|consen 440 N-FEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFES--TKAVYDRIIDLRIATPQIIIN 516 (835)
T ss_pred h-HHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHH--HHHHHHHHHHHhcCCHHHHHH
Confidence 8 88887766 678888888888888888 888888888888777877666
Q ss_pred hhhhccCChhhHHHHHHHHh
Q psy8160 301 KDFSNNSNREDYHQALNKYR 320 (324)
Q Consensus 301 l~~~~~~~~~~~~~a~~~~~ 320 (324)
.+... .+..-|..+...|.
T Consensus 517 yAmfL-Eeh~yfeesFk~YE 535 (835)
T KOG2047|consen 517 YAMFL-EEHKYFEESFKAYE 535 (835)
T ss_pred HHHHH-HhhHHHHHHHHHHH
Confidence 65432 23455555555554
No 155
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.02 E-value=1.7e-08 Score=87.14 Aligned_cols=120 Identities=21% Similarity=0.272 Sum_probs=105.8
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHH
Q psy8160 125 RFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSL 204 (324)
Q Consensus 125 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 204 (324)
.-.+-.+....++++.|++.+++..+.+ |. +...++.++.. .++..+|+..+.+++...|.+...+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe-----v~~~LA~v~l~-------~~~E~~AI~ll~~aL~~~p~d~~LL 237 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE-----VAVLLARVYLL-------MNEEVEAIRLLNEALKENPQDSELL 237 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc-----HHHHHHHHHHh-------cCcHHHHHHHHHHHHHhCCCCHHHH
Confidence 3344556667789999999999998887 54 55667888765 3367899999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 205 YLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 205 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
...+..+...++++.|+...++++.+.|++...|+.|+.+|...|+ ++.|+..+
T Consensus 238 ~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d-~e~ALlaL 291 (395)
T PF09295_consen 238 NLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGD-FENALLAL 291 (395)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCC-HHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 99999887
No 156
>KOG2047|consensus
Probab=99.01 E-value=8.1e-07 Score=78.77 Aligned_cols=189 Identities=9% Similarity=0.032 Sum_probs=143.2
Q ss_pred HHHHhcccHHHHHHHHHHHHHh-cCCCcc-cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh--hHHHHHHH
Q psy8160 92 LMFKVNNEYDSALKHLTLCLID-ASPCTF-TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK--ADICRQLG 167 (324)
Q Consensus 92 ~~~~~~~~~~~A~~~~~~~l~~-~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~l~ 167 (324)
.+-...|+..+-+..|..++.. +|.... ....+|...|.+|...|+.+.|...|++++..+ -..+. +.+|..-|
T Consensus 355 RV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~--y~~v~dLa~vw~~wa 432 (835)
T KOG2047|consen 355 RVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVP--YKTVEDLAEVWCAWA 432 (835)
T ss_pred hhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCC--ccchHHHHHHHHHHH
Confidence 3444567888889999998776 333332 345789999999999999999999999998765 22221 55666655
Q ss_pred HHHHhhhhhcccchhHHHHHHHHHHHhhhCCc------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy8160 168 WMYHCIDTLGEKSHRETLAIHCLQKSIEADPK------------------SGQSLYLLGRCFAAVGKVHDAFLAYRNSVE 229 (324)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 229 (324)
..-.. ..+++.|+.+.++|...-.. +..+|...+..-...|-++.....|.+.++
T Consensus 433 emElr-------h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriid 505 (835)
T KOG2047|consen 433 EMELR-------HENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIID 505 (835)
T ss_pred HHHHh-------hhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44443 45899999999999754211 125677778888888999999999999999
Q ss_pred cCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-------------HHHHhh-HHHHHHcC--CCCcchHHHHHHHhhhcCC
Q psy8160 230 KSEGNADTWCSIGNKDFSNNSNREDYHQAL-------------NKYRDL-GDFLVINN--IPTSNNNRQCYNSYSTSIA 292 (324)
Q Consensus 230 ~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-------------~~~~~l-g~~~~~~~--~~~~~~A~~~~~~al~~~p 292 (324)
+.--.|....+.|..+....- +++|-+.| ++|... -..-.+-| ..+. |.+.|++|++.-|
T Consensus 506 LriaTPqii~NyAmfLEeh~y-feesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr--aRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 506 LRIATPQIIINYAMFLEEHKY-FEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER--ARDLFEQALDGCP 581 (835)
T ss_pred HhcCCHHHHHHHHHHHHhhHH-HHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH--HHHHHHHHHhcCC
Confidence 999999999999999999999 99999999 555432 22222333 5777 9999999999888
No 157
>PRK15331 chaperone protein SicA; Provisional
Probab=99.01 E-value=6.5e-09 Score=77.16 Aligned_cols=107 Identities=12% Similarity=0.057 Sum_probs=96.8
Q ss_pred HHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH----------
Q psy8160 190 LQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL---------- 259 (324)
Q Consensus 190 ~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~---------- 259 (324)
+..+..+.++..+..+..|.-++..|++++|...|+-....+|.+++.|..||.|+..+++ |++|+..|
T Consensus 26 lk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~-y~~Ai~~Y~~A~~l~~~d 104 (165)
T PRK15331 26 LKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQ-FQKACDLYAVAFTLLKND 104 (165)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcccCC
Confidence 4455567777788999999999999999999999999999999999999999999999999 99999999
Q ss_pred -HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhc
Q psy8160 260 -NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNN 300 (324)
Q Consensus 260 -~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 300 (324)
...+..|.||...|+... |..+|+.+++ .|.++.++.+
T Consensus 105 p~p~f~agqC~l~l~~~~~--A~~~f~~a~~-~~~~~~l~~~ 143 (165)
T PRK15331 105 YRPVFFTGQCQLLMRKAAK--ARQCFELVNE-RTEDESLRAK 143 (165)
T ss_pred CCccchHHHHHHHhCCHHH--HHHHHHHHHh-CcchHHHHHH
Confidence 677899999999999999 9999999998 6777766554
No 158
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.01 E-value=3e-08 Score=76.22 Aligned_cols=183 Identities=13% Similarity=0.078 Sum_probs=108.4
Q ss_pred hhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHH
Q psy8160 86 FTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQ 165 (324)
Q Consensus 86 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 165 (324)
.....|.+|-..|-..-|.-.|.+++...|..+ +++..+|..+...|+++.|.+.|...++++ |.... +..+
T Consensus 67 l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~----~vfNyLG~Yl~~a~~fdaa~eaFds~~ELD--p~y~Y--a~lN 138 (297)
T COG4785 67 LLFERGVLYDSLGLRALARNDFSQALAIRPDMP----EVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNY--AHLN 138 (297)
T ss_pred HHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcH----HHHHHHHHHHHhcccchHHHHHhhhHhccC--CcchH--HHhc
Confidence 334456666666777777777777777766655 667777777777777777777777777777 65533 4455
Q ss_pred HHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHH--HHHHHHHHHHHcCCHHHHHHHH-HHHHccCCCCHHHHH---
Q psy8160 166 LGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQ--SLYLLGRCFAAVGKVHDAFLAY-RNSVEKSEGNADTWC--- 239 (324)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~lg~~~~~~~~~~~A~~~~-~~al~~~p~~~~~~~--- 239 (324)
.|..++. -|+++-|.+.+.+--+.+|++|. .|..+- ...-++.+|...+ +++...+.+ -..|.
T Consensus 139 Rgi~~YY-------~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~e-~WG~~iV~ 207 (297)
T COG4785 139 RGIALYY-------GGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDKE-QWGWNIVE 207 (297)
T ss_pred cceeeee-------cCchHhhHHHHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhccHh-hhhHHHHH
Confidence 5544433 33777777777777777777662 232221 1223445554433 334333322 22222
Q ss_pred -HhHHHHhhcCCCHHHHHHHH------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCC
Q psy8160 240 -SIGNKDFSNNSNREDYHQAL------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIA 292 (324)
Q Consensus 240 -~lg~~~~~~~~~~~~A~~~~------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p 292 (324)
.+|.+-.+. .-++++.+ ++++.||..|...|+.++ |...|+-|+..+-
T Consensus 208 ~yLgkiS~e~---l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~--A~~LfKLaiannV 268 (297)
T COG4785 208 FYLGKISEET---LMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDE--ATALFKLAVANNV 268 (297)
T ss_pred HHHhhccHHH---HHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHH--HHHHHHHHHHHhH
Confidence 222221100 00111111 899999999999999999 9999999987543
No 159
>KOG0543|consensus
Probab=99.00 E-value=1.5e-08 Score=85.12 Aligned_cols=82 Identities=18% Similarity=0.179 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHh
Q psy8160 162 ICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSI 241 (324)
Q Consensus 162 ~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 241 (324)
++.+++.++.. ++++..|+....++|+.+|.|..++|..|.++..+|+++.|+..|+++++++|.|..+...|
T Consensus 259 ~~lNlA~c~lK-------l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el 331 (397)
T KOG0543|consen 259 CHLNLAACYLK-------LKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAEL 331 (397)
T ss_pred HhhHHHHHHHh-------hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 44445555544 22555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHhhcCC
Q psy8160 242 GNKDFSNNS 250 (324)
Q Consensus 242 g~~~~~~~~ 250 (324)
..|..+...
T Consensus 332 ~~l~~k~~~ 340 (397)
T KOG0543|consen 332 IKLKQKIRE 340 (397)
T ss_pred HHHHHHHHH
Confidence 555444444
No 160
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.99 E-value=1.9e-08 Score=82.65 Aligned_cols=107 Identities=15% Similarity=0.209 Sum_probs=91.8
Q ss_pred HHHHHHHHHH-HHhhcHHHHHHHHHHHHhcCCCCCchh-hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc
Q psy8160 123 EVRFHIAHLH-EVQRKYKTAKDSYEQLLKEDDLPVHLK-ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS 200 (324)
Q Consensus 123 ~~~~~la~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 200 (324)
...+..|..+ ...|++++|+..|+..+... |++.. +.+++.+|.+|+. .+++++|+..|+++++..|++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~-------~g~~~~A~~~f~~vv~~yP~s 213 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYN-------KGKKDDAAYYFASVVKNYPKS 213 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHCCCC
Confidence 5567777665 55699999999999999999 77643 5699999999987 559999999999999888775
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q psy8160 201 ---GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTW 238 (324)
Q Consensus 201 ---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 238 (324)
+++++.+|.++...|++++|...|+++++..|++..+-
T Consensus 214 ~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 214 PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 68999999999999999999999999999999887553
No 161
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.99 E-value=9.5e-08 Score=73.56 Aligned_cols=189 Identities=14% Similarity=0.172 Sum_probs=136.6
Q ss_pred cchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q psy8160 49 RANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFH 127 (324)
Q Consensus 49 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 127 (324)
..+..+|..|..|-..|-+.-|.-.|.+++ +.|+-+.+...+|..+...|+|+.|.+.|..++..+|... -++.+
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~----Ya~lN 138 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN----YAHLN 138 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch----HHHhc
Confidence 345689999999999999999999999999 9999999999999999999999999999999999988876 67778
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHH-HhhhCCccHHHHHH
Q psy8160 128 IAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQK-SIEADPKSGQSLYL 206 (324)
Q Consensus 128 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~-al~~~~~~~~~~~~ 206 (324)
.|..+.-.|++.-|.+.+.+-.+.+ |++.. +.-|+|.... .-++.+|..-+.+ +...+ +..-.|+.
T Consensus 139 Rgi~~YY~gR~~LAq~d~~~fYQ~D--~~DPf-----R~LWLYl~E~-----k~dP~~A~tnL~qR~~~~d-~e~WG~~i 205 (297)
T COG4785 139 RGIALYYGGRYKLAQDDLLAFYQDD--PNDPF-----RSLWLYLNEQ-----KLDPKQAKTNLKQRAEKSD-KEQWGWNI 205 (297)
T ss_pred cceeeeecCchHhhHHHHHHHHhcC--CCChH-----HHHHHHHHHh-----hCCHHHHHHHHHHHHHhcc-HhhhhHHH
Confidence 8888888999999999999998888 76632 2335554321 2256677655444 43333 22222322
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCC-------HHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 207 LGRCFAAVGKVHDAFLAYRNSVEKSEGN-------ADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 207 lg~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.+ +..|+..+ ...++++.....++ .++++.+|..+...|+ .++|...|
T Consensus 206 V~---~yLgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~-~~~A~~Lf 260 (297)
T COG4785 206 VE---FYLGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD-LDEATALF 260 (297)
T ss_pred HH---HHHhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHH
Confidence 22 22222211 22333433333333 5788999999999999 99998777
No 162
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.99 E-value=4.3e-08 Score=88.34 Aligned_cols=89 Identities=18% Similarity=0.210 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCH
Q psy8160 138 YKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKV 217 (324)
Q Consensus 138 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~ 217 (324)
...+....++++.....|.. +.++..+|..... .+++++|...+++++.++| +..+|..+|.++...|++
T Consensus 400 l~~a~~~~~~a~al~~~~~~--~~~~~ala~~~~~-------~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~ 469 (517)
T PRK10153 400 LAALSTELDNIVALPELNVL--PRIYEILAVQALV-------KGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDN 469 (517)
T ss_pred HHHHHHHHHHhhhcccCcCC--hHHHHHHHHHHHh-------cCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCH
Confidence 44555666666665312444 4477777777654 4599999999999999999 588999999999999999
Q ss_pred HHHHHHHHHHHccCCCCHH
Q psy8160 218 HDAFLAYRNSVEKSEGNAD 236 (324)
Q Consensus 218 ~~A~~~~~~al~~~p~~~~ 236 (324)
++|+..|++|+.++|.++.
T Consensus 470 ~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 470 RLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHHhcCCCCch
Confidence 9999999999999999875
No 163
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.97 E-value=2.1e-08 Score=71.66 Aligned_cols=99 Identities=16% Similarity=0.161 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc---
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK--- 199 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--- 199 (324)
.++|++|.++...|+.++|+..|++++... .+......++..+|..+.. .|++++|+..+++++...|+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g-L~~~~~~~a~i~lastlr~-------LG~~deA~~~L~~~~~~~p~~~~ 73 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAG-LSGADRRRALIQLASTLRN-------LGRYDEALALLEEALEEFPDDEL 73 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHCCCccc
Confidence 356677777777777777777777777653 1222224566677777755 44777777777777776666
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy8160 200 SGQSLYLLGRCFAAVGKVHDAFLAYRNSVE 229 (324)
Q Consensus 200 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 229 (324)
+......++.++...|++++|+.++-.++.
T Consensus 74 ~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 74 NAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 556666667777777777777777766654
No 164
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.96 E-value=3e-09 Score=68.71 Aligned_cols=65 Identities=17% Similarity=0.275 Sum_probs=59.9
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNK 244 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 244 (324)
.|++++|+..|++++..+|+++.+++.+|.++...|++++|...+++++..+|+++..+..++.+
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence 45999999999999999999999999999999999999999999999999999998888777653
No 165
>KOG3081|consensus
Probab=98.94 E-value=5.1e-07 Score=71.77 Aligned_cols=152 Identities=15% Similarity=0.156 Sum_probs=121.5
Q ss_pred hhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHH
Q psy8160 85 TFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICR 164 (324)
Q Consensus 85 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 164 (324)
.....-|.++...|++++|++....... .++.-.--.++.+..+.+-|....++..+++ .+. ++.
T Consensus 109 i~~l~aa~i~~~~~~~deAl~~~~~~~~---------lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id--ed~----tLt 173 (299)
T KOG3081|consen 109 IDLLLAAIIYMHDGDFDEALKALHLGEN---------LEAAALNVQILLKMHRFDLAEKELKKMQQID--EDA----TLT 173 (299)
T ss_pred HHHHHhhHHhhcCCChHHHHHHHhccch---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--hHH----HHH
Confidence 3444457888888999999997665321 1334444567788889999999999998887 443 777
Q ss_pred HHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHH
Q psy8160 165 QLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNK 244 (324)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 244 (324)
+++..+.....- .+...+|.-+|++.-+..|..+......+.|++.+|+|++|...++.++..++++|++..++-.+
T Consensus 174 QLA~awv~la~g---gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~ 250 (299)
T KOG3081|consen 174 QLAQAWVKLATG---GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVL 250 (299)
T ss_pred HHHHHHHHHhcc---chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 777777553322 34689999999999988888999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCHHHH
Q psy8160 245 DFSNNSNREDY 255 (324)
Q Consensus 245 ~~~~~~~~~~A 255 (324)
-...|. ..++
T Consensus 251 a~~~Gk-d~~~ 260 (299)
T KOG3081|consen 251 ALHLGK-DAEV 260 (299)
T ss_pred HHHhCC-ChHH
Confidence 888888 4443
No 166
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.94 E-value=1.2e-08 Score=83.69 Aligned_cols=95 Identities=12% Similarity=0.197 Sum_probs=67.2
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHccCCCC---HHHHHHhHHHHhhcCCCHHHHHHHH--------------HHHH
Q psy8160 202 QSLYLLGRCF-AAVGKVHDAFLAYRNSVEKSEGN---ADTWCSIGNKDFSNNSNREDYHQAL--------------NKYR 263 (324)
Q Consensus 202 ~~~~~lg~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~~A~~~~--------------~~~~ 263 (324)
..+|..|..+ +..|++++|+..|++.+...|++ +.+++.+|.+|+..|+ +++|+..| ++++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~-~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGK-KDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 4555555554 44566666666666666666665 4566666666666666 66666666 6677
Q ss_pred hhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhh
Q psy8160 264 DLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINN 299 (324)
Q Consensus 264 ~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 299 (324)
.+|.++...|++++ |+..|+++++..|++.....
T Consensus 222 klg~~~~~~g~~~~--A~~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 222 KVGVIMQDKGDTAK--AKAVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred HHHHHHHHcCCHHH--HHHHHHHHHHHCcCCHHHHH
Confidence 77778877888889 99999999999998876543
No 167
>PRK11906 transcriptional regulator; Provisional
Probab=98.93 E-value=1.1e-07 Score=82.01 Aligned_cols=144 Identities=10% Similarity=-0.004 Sum_probs=109.8
Q ss_pred cHHHHHHHHHHHH---HhcCCCcccHHHHHHHHHHHHHHh---------hcHHHHHHHHHHHHhcCCCCCchhhHHHHHH
Q psy8160 99 EYDSALKHLTLCL---IDASPCTFTKLEVRFHIAHLHEVQ---------RKYKTAKDSYEQLLKEDDLPVHLKADICRQL 166 (324)
Q Consensus 99 ~~~~A~~~~~~~l---~~~~~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 166 (324)
..+.|+..|.+++ ..+|... .++..++.|++.. .+-.+|...-+++++++ |.+ +.++..+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a----~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld--~~D--a~a~~~~ 344 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKT----ECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT--TVD--GKILAIM 344 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccH----HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC--CCC--HHHHHHH
Confidence 3456666666776 4444443 5666666666544 34567888999999999 888 5588999
Q ss_pred HHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH-hHH-H
Q psy8160 167 GWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCS-IGN-K 244 (324)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-lg~-~ 244 (324)
|.+... .++++.|+..|++++.++|+.+.+|+..|.+....|+.++|+..++++++++|.-..+-.. +-. .
T Consensus 345 g~~~~~-------~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~ 417 (458)
T PRK11906 345 GLITGL-------SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDM 417 (458)
T ss_pred HHHHHh-------hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHH
Confidence 987755 3479999999999999999999999999999999999999999999999999976544322 222 3
Q ss_pred HhhcCCCHHHHHHHH
Q psy8160 245 DFSNNSNREDYHQAL 259 (324)
Q Consensus 245 ~~~~~~~~~~A~~~~ 259 (324)
|... . .++|++.|
T Consensus 418 ~~~~-~-~~~~~~~~ 430 (458)
T PRK11906 418 YVPN-P-LKNNIKLY 430 (458)
T ss_pred HcCC-c-hhhhHHHH
Confidence 4433 3 68888776
No 168
>KOG1941|consensus
Probab=98.90 E-value=2.2e-07 Score=76.97 Aligned_cols=221 Identities=15% Similarity=0.100 Sum_probs=154.2
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-c-----C-CCCchhhHHHHHHHHhcccHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-I-----D-ASPCTFTKLEGLMFKVNNEYDSA 103 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~-----~-~~~~~~~~~la~~~~~~~~~~~A 103 (324)
++|+....+.|..-.+....-..+-.+..+...+|.|++++..--..+ . | .....++..++.-+....++.++
T Consensus 23 ~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt 102 (518)
T KOG1941|consen 23 EKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKT 102 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 777777777776543322122233345566777888887766544333 1 1 11234556678888888889999
Q ss_pred HHHHHHHHHhcCCCc-ccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCC--chhhHHHHHHHHHHHhhhhhcccc
Q psy8160 104 LKHLTLCLIDASPCT-FTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPV--HLKADICRQLGWMYHCIDTLGEKS 180 (324)
Q Consensus 104 ~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~ 180 (324)
+.+-+..+....... ..-......+|..+..++.++++++.|++++......+ ..+-.++..+|.+|-. .
T Consensus 103 ~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~-------l 175 (518)
T KOG1941|consen 103 ISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ-------L 175 (518)
T ss_pred HHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH-------H
Confidence 988887776544433 12235666789999999999999999999986531111 1234588899998866 4
Q ss_pred hhHHHHHHHHHHHhhhCCcc----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccC------CCCHHHHHHhHHH
Q psy8160 181 HRETLAIHCLQKSIEADPKS----------GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKS------EGNADTWCSIGNK 244 (324)
Q Consensus 181 ~~~~~A~~~~~~al~~~~~~----------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~ 244 (324)
.++++|+.+..++.++.... ..+++.++..+...|..-+|.++++++.++. +..+.....+|++
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 48999999999998764321 2567888999999999999999999987753 3335566788999
Q ss_pred HhhcCCCHHHHHHHH
Q psy8160 245 DFSNNSNREDYHQAL 259 (324)
Q Consensus 245 ~~~~~~~~~~A~~~~ 259 (324)
|...|+ .+.|..-|
T Consensus 256 yR~~gd-~e~af~rY 269 (518)
T KOG1941|consen 256 YRSRGD-LERAFRRY 269 (518)
T ss_pred HHhccc-HhHHHHHH
Confidence 999999 88887777
No 169
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.89 E-value=1e-08 Score=88.04 Aligned_cols=64 Identities=19% Similarity=0.272 Sum_probs=56.9
Q ss_pred hhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH---HHHhHHHHhhcCCCHHHHHHHH
Q psy8160 195 EADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADT---WCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 195 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
..+|+++.+|+++|.+++..|++++|+..|+++++++|+++++ |+++|.+|..+|+ +++|+.++
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr-~dEAla~L 135 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREE-GKKAADCL 135 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 3678999999999999999999999999999999999999865 8999999888888 66666655
No 170
>KOG4234|consensus
Probab=98.89 E-value=3.3e-08 Score=75.06 Aligned_cols=118 Identities=13% Similarity=0.041 Sum_probs=93.9
Q ss_pred chhHHHHHHHHHHHhhhCCccH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSG-----QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNRED 254 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~-----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~ 254 (324)
.|+|++|...|..|+...|..+ -.|.+.|.+.+.++.++.|+..+.++++++|.+..+....+.+|.+...
T Consensus 108 ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek---- 183 (271)
T KOG4234|consen 108 NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK---- 183 (271)
T ss_pred cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh----
Confidence 5699999999999999998765 4567889999999999999999999999999987777777766666655
Q ss_pred HHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhcc--CCh--hhHHHHHHHHhhcC
Q psy8160 255 YHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNN--SNR--EDYHQALNKYRDLG 323 (324)
Q Consensus 255 A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--~~~--~~~~~a~~~~~~~~ 323 (324)
+++ |+..|.+.++.+|+...++....-+.- ..| .--.+++.+++++|
T Consensus 184 --------------------~ee--aleDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee~m~kLKdlG 234 (271)
T KOG4234|consen 184 --------------------YEE--ALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEEMMEKLKDLG 234 (271)
T ss_pred --------------------HHH--HHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 777 999999999999998877665543321 122 23457888999887
No 171
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.88 E-value=5.8e-08 Score=69.44 Aligned_cols=91 Identities=16% Similarity=0.212 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC---C
Q psy8160 161 DICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS---GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG---N 234 (324)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~ 234 (324)
.+++.+++++.. .|+.++|+.+|++++...... ..+++.+|.++...|++++|+..+++++...|+ +
T Consensus 2 ~~~~~~A~a~d~-------~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~ 74 (120)
T PF12688_consen 2 RALYELAWAHDS-------LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELN 74 (120)
T ss_pred chHHHHHHHHHh-------cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcccc
Confidence 378899999955 559999999999999875444 478999999999999999999999999999898 7
Q ss_pred HHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 235 ADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 235 ~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
..+...++.++...|+ +++|+..+
T Consensus 75 ~~l~~f~Al~L~~~gr-~~eAl~~~ 98 (120)
T PF12688_consen 75 AALRVFLALALYNLGR-PKEALEWL 98 (120)
T ss_pred HHHHHHHHHHHHHCCC-HHHHHHHH
Confidence 8888889999999999 99998876
No 172
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.88 E-value=3e-06 Score=68.36 Aligned_cols=109 Identities=15% Similarity=0.168 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHhhhCC---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-CHHHHHHhHHHHhhcCCCHHHHHH
Q psy8160 182 RETLAIHCLQKSIEADP---KSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG-NADTWCSIGNKDFSNNSNREDYHQ 257 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~A~~ 257 (324)
+++.|+..+.+++...| .....+...+..+...++++.|+..+.+++...+. ....+..++.++...+. +..|+.
T Consensus 145 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~ 223 (291)
T COG0457 145 DYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK-YEEALE 223 (291)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc-HHHHHH
Confidence 44445555555444333 22333333444444444555555555555555444 34444455555555444 444444
Q ss_pred HH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCC
Q psy8160 258 AL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIAS 293 (324)
Q Consensus 258 ~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (324)
.+ ..+..++..+...+.... +...+.+++...|.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 268 (291)
T COG0457 224 YYEKALELDPDNAEALYNLALLLLELGRYEE--ALEALEKALELDPD 268 (291)
T ss_pred HHHHHHhhCcccHHHHhhHHHHHHHcCCHHH--HHHHHHHHHHhCcc
Confidence 44 234444444444445666 77777777777775
No 173
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.87 E-value=5.6e-06 Score=66.76 Aligned_cols=214 Identities=21% Similarity=0.241 Sum_probs=170.0
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh---cCCCCchhhHHHHHHHHhcccHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL---IDASPCTFTKLEGLMFKVNNEYDSALKHL 107 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 107 (324)
..+...+...+...+.. .........+..+...+++..+...+...+ ..+.........+..+...+++..+++.+
T Consensus 40 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (291)
T COG0457 40 AEALELLEEALELLPNS-DLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELL 118 (291)
T ss_pred HHHHHHHHHHHhcCccc-cchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 66777777777777542 123467888899999999999999999888 36777777788899999999999999999
Q ss_pred HHHHHhcCCCcccHHHHHHHHHH-HHHHhhcHHHHHHHHHHHHhcCCCCC-chhhHHHHHHHHHHHhhhhhcccchhHHH
Q psy8160 108 TLCLIDASPCTFTKLEVRFHIAH-LHEVQRKYKTAKDSYEQLLKEDDLPV-HLKADICRQLGWMYHCIDTLGEKSHRETL 185 (324)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~~la~-~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 185 (324)
..++...+... ......+. ++...|+++.|...|.+++... |. ..........+..+.. .++++.
T Consensus 119 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-------~~~~~~ 185 (291)
T COG0457 119 EKALALDPDPD----LAEALLALGALYELGDYEEALELYEKALELD--PELNELAEALLALGALLEA-------LGRYEE 185 (291)
T ss_pred HHHHcCCCCcc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCccchHHHHHHhhhHHHH-------hcCHHH
Confidence 99987665553 33444444 8899999999999999997755 42 1223344444444322 348999
Q ss_pred HHHHHHHHhhhCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 186 AIHCLQKSIEADPK-SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 186 A~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
|+..+.+++...+. ....+..++.++...++++.|+..+..++...|.....+..++..+...+. ++.+...+
T Consensus 186 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 259 (291)
T COG0457 186 ALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGR-YEEALEAL 259 (291)
T ss_pred HHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCC-HHHHHHHH
Confidence 99999999999998 689999999999999999999999999999999988888888888887787 88888776
No 174
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.86 E-value=1.5e-07 Score=81.38 Aligned_cols=120 Identities=20% Similarity=0.295 Sum_probs=105.2
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWM 169 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~ 169 (324)
+-.++...++++.|+..+++.....| ++...++.++...++..+|+..+.+++... |.+ +..+...+..
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~p-------ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d--~~LL~~Qa~f 243 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDP-------EVAVLLARVYLLMNEEVEAIRLLNEALKEN--PQD--SELLNLQAEF 243 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCC-------cHHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCC--HHHHHHHHHH
Confidence 56677778999999999999887764 356678999999999999999999999888 877 5588888888
Q ss_pred HHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8160 170 YHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNS 227 (324)
Q Consensus 170 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 227 (324)
+.. .++++.|+...+++++..|.+...|+.|+.+|...|+++.|+..++.+
T Consensus 244 Ll~-------k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 244 LLS-------KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHh-------cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 866 558999999999999999999999999999999999999999888754
No 175
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.85 E-value=1.9e-06 Score=68.74 Aligned_cols=163 Identities=12% Similarity=0.155 Sum_probs=112.4
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh-hHHHHHHHHH
Q psy8160 91 GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK-ADICRQLGWM 169 (324)
Q Consensus 91 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~l~~~ 169 (324)
|......|++++|.+.|+.+....|.++.. ..+...++..+...++++.|+...++-+... |.+.. ..+++..|.+
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~-~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly--P~~~n~dY~~YlkgLs 117 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYS-EQAQLDLAYAYYKNGEYDLALAYIDRFIRLY--PTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhC--CCCCChhHHHHHHHHH
Confidence 334444455555555555555555555544 4678888999999999999999999999998 66654 5577777777
Q ss_pred HHhhhh-hcccchhHHHHHHHHHHHhhhCCccHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q psy8160 170 YHCIDT-LGEKSHRETLAIHCLQKSIEADPKSGQ-----------------SLYLLGRCFAAVGKVHDAFLAYRNSVEKS 231 (324)
Q Consensus 170 ~~~~~~-~~~~~~~~~~A~~~~~~al~~~~~~~~-----------------~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 231 (324)
++..-. ......-..+|+..++..+...|++.- -=..+|..|.+.|.+..|+.-++.+++.-
T Consensus 118 ~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y 197 (254)
T COG4105 118 YFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENY 197 (254)
T ss_pred HhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcc
Confidence 643211 111133566889999999999998861 11356888999999999999999999887
Q ss_pred CCC---HHHHHHhHHHHhhcCCCHHHHHH
Q psy8160 232 EGN---ADTWCSIGNKDFSNNSNREDYHQ 257 (324)
Q Consensus 232 p~~---~~~~~~lg~~~~~~~~~~~~A~~ 257 (324)
|+. .+++..+..+|..+|- .++|.+
T Consensus 198 ~~t~~~~eaL~~l~eaY~~lgl-~~~a~~ 225 (254)
T COG4105 198 PDTSAVREALARLEEAYYALGL-TDEAKK 225 (254)
T ss_pred ccccchHHHHHHHHHHHHHhCC-hHHHHH
Confidence 665 3455666666666666 555533
No 176
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.81 E-value=2.7e-08 Score=65.18 Aligned_cols=63 Identities=19% Similarity=0.330 Sum_probs=58.6
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 242 (324)
.+++++|+.++++++..+|.++..|..+|.++...|++.+|+..++++++.+|+++.+....+
T Consensus 8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 8 QEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 459999999999999999999999999999999999999999999999999999988765554
No 177
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.77 E-value=2.3e-06 Score=68.25 Aligned_cols=161 Identities=13% Similarity=0.153 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh-hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK-ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS 200 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 200 (324)
+..++.-|....+.|++++|++.|+.+.... |.... ..+...++..++. .+++++|+...++-+.+.|.+
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~--p~s~~~~qa~l~l~yA~Yk-------~~~y~~A~~~~drFi~lyP~~ 104 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRH--PFSPYSEQAQLDLAYAYYK-------NGEYDLALAYIDRFIRLYPTH 104 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCcccHHHHHHHHHHHHh-------cccHHHHHHHHHHHHHhCCCC
Confidence 4678888999999999999999999999887 65433 5688888888877 559999999999999999988
Q ss_pred H---HHHHHHHHHHHHc--------CCHHHHHHHHHHHHccCCCCH---HH--------------HHHhHHHHhhcCCCH
Q psy8160 201 G---QSLYLLGRCFAAV--------GKVHDAFLAYRNSVEKSEGNA---DT--------------WCSIGNKDFSNNSNR 252 (324)
Q Consensus 201 ~---~~~~~lg~~~~~~--------~~~~~A~~~~~~al~~~p~~~---~~--------------~~~lg~~~~~~~~~~ 252 (324)
+ -+++..|.+++.. .-...|+..|+..+...|++. ++ =..+|..|.+.|. |
T Consensus 105 ~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~-~ 183 (254)
T COG4105 105 PNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGA-Y 183 (254)
T ss_pred CChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC-h
Confidence 7 4678888887754 224568999999999999872 21 2356788888888 8
Q ss_pred HHHHHHH--------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhc-CCChh
Q psy8160 253 EDYHQAL--------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTS-IASCK 295 (324)
Q Consensus 253 ~~A~~~~--------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~-~p~~~ 295 (324)
..|+..+ +++..+..+|.+.|-.++ |-+.=. .+.. .|+++
T Consensus 184 ~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~--a~~~~~-vl~~N~p~s~ 238 (254)
T COG4105 184 VAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDE--AKKTAK-VLGANYPDSQ 238 (254)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHH--HHHHHH-HHHhcCCCCc
Confidence 8887766 778888888888887777 665544 4444 45554
No 178
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.75 E-value=2.7e-08 Score=74.55 Aligned_cols=108 Identities=9% Similarity=0.073 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCC
Q psy8160 182 RETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGK----------VHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSN 251 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~----------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 251 (324)
-++.|.+.++.....+|.+++.+++.|.++..+.+ +++|+.-|++|+.++|+..++++++|.+|...+.
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~- 84 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF- 84 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh-
Confidence 57889999999999999999999999988877633 4668888999999999999999999999987664
Q ss_pred HHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhh
Q psy8160 252 REDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFS 304 (324)
Q Consensus 252 ~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 304 (324)
...- .-.....+++ |.++|++|...+|+|...+..|...
T Consensus 85 l~~d------------~~~A~~~F~k--A~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 85 LTPD------------TAEAEEYFEK--ATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp H---------------HHHHHHHHHH--HHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred hcCC------------hHHHHHHHHH--HHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 2211 1111223678 9999999999999999888887754
No 179
>KOG4234|consensus
Probab=98.73 E-value=3.3e-07 Score=69.70 Aligned_cols=119 Identities=15% Similarity=0.139 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCch---hhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHL---KADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK 199 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 199 (324)
+.+-.-|.-++..|+|++|...|..++... |... +...+.+.|-+... ++.++.|+..+.++++++|.
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~c--p~~~~e~rsIly~Nraaa~iK-------l~k~e~aI~dcsKaiel~pt 166 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESC--PSTSTEERSILYSNRAAALIK-------LRKWESAIEDCSKAIELNPT 166 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhC--ccccHHHHHHHHhhhHHHHHH-------hhhHHHHHHHHHhhHhcCch
Confidence 344455888899999999999999999987 5432 24566666766655 55899999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCC
Q psy8160 200 SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNS 250 (324)
Q Consensus 200 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 250 (324)
+..++...+.+|..+.++++|+.-|.+.++.+|....+...+..+--....
T Consensus 167 y~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~e 217 (271)
T KOG4234|consen 167 YEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINE 217 (271)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHH
Confidence 999999999999999999999999999999999988777666665444444
No 180
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.72 E-value=2.9e-07 Score=74.00 Aligned_cols=107 Identities=16% Similarity=0.200 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh-hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc---
Q psy8160 125 RFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK-ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS--- 200 (324)
Q Consensus 125 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--- 200 (324)
.|+.|.-+...|+|..|...|..-++.. |++.. +.+++.||.+++. .|+++.|...|..+.+..|++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~-------qg~y~~Aa~~f~~~~k~~P~s~KA 214 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYA-------QGDYEDAAYIFARVVKDYPKSPKA 214 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHh-------cccchHHHHHHHHHHHhCCCCCCC
Confidence 7888999999999999999999999998 77655 7899999999988 569999999999999988766
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH
Q psy8160 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCS 240 (324)
Q Consensus 201 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 240 (324)
|++++.||.+...+|+.++|...|+++++..|+.+.+-..
T Consensus 215 pdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 215 PDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 4889999999999999999999999999999998766443
No 181
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.71 E-value=7e-07 Score=65.00 Aligned_cols=106 Identities=16% Similarity=0.184 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh-hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK-ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG 201 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 201 (324)
..++.-|......|+|++|++.|+.+.... |.... ..+...++.+|+. .+++++|+..+++-++++|.++
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry--P~g~ya~qAqL~l~yayy~-------~~~y~~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRY--PFGEYAEQAQLDLAYAYYK-------QGDYEEAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCCcccHHHHHHHHHHHHH-------ccCHHHHHHHHHHHHHhCCCCC
Confidence 345555555555566666666665555554 32211 3455555555554 3355566666666665555554
Q ss_pred ---HHHHHHHHHHHHcCC---------------HHHHHHHHHHHHccCCCCHHH
Q psy8160 202 ---QSLYLLGRCFAAVGK---------------VHDAFLAYRNSVEKSEGNADT 237 (324)
Q Consensus 202 ---~~~~~lg~~~~~~~~---------------~~~A~~~~~~al~~~p~~~~~ 237 (324)
-+++..|.+++.+.. ..+|...|++.+...|++.-+
T Consensus 82 ~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 82 NVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred CccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 345555555555544 668999999999999887543
No 182
>KOG4648|consensus
Probab=98.69 E-value=2.9e-08 Score=81.47 Aligned_cols=98 Identities=11% Similarity=0.138 Sum_probs=73.1
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Q psy8160 55 LRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHE 133 (324)
Q Consensus 55 ~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~ 133 (324)
-..|.-|+.+|.|++|+.||.+++ .+|.+...+...|..|.....|..|+..++.++..+.... .++...|....
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~----KAYSRR~~AR~ 176 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYV----KAYSRRMQARE 176 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHH----HHHHHHHHHHH
Confidence 345777888888888888888888 8888877777788888888888888887777775543322 45666777777
Q ss_pred HhhcHHHHHHHHHHHHhcCCCCCch
Q psy8160 134 VQRKYKTAKDSYEQLLKEDDLPVHL 158 (324)
Q Consensus 134 ~~~~~~~A~~~~~~al~~~~~~~~~ 158 (324)
.+|..++|.+.++.++.+. |+..
T Consensus 177 ~Lg~~~EAKkD~E~vL~LE--P~~~ 199 (536)
T KOG4648|consen 177 SLGNNMEAKKDCETVLALE--PKNI 199 (536)
T ss_pred HHhhHHHHHHhHHHHHhhC--cccH
Confidence 7788888888888888877 6653
No 183
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.68 E-value=3.9e-07 Score=68.44 Aligned_cols=104 Identities=16% Similarity=0.243 Sum_probs=78.7
Q ss_pred cHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhc---ccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHH
Q psy8160 137 KYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLG---EKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAA 213 (324)
Q Consensus 137 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 213 (324)
-|+.|.+.++.....+ |.+ ++.+++=|.++....... +...-+++|+.-|++++.++|+..++++.+|.++..
T Consensus 6 ~FE~ark~aea~y~~n--P~D--adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKN--PLD--ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHHHHH---TT---HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC--cHh--HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 3678888999989999 887 557777777775543332 234578999999999999999999999999999987
Q ss_pred cCC-----------HHHHHHHHHHHHccCCCCHHHHHHhHHH
Q psy8160 214 VGK-----------VHDAFLAYRNSVEKSEGNADTWCSIGNK 244 (324)
Q Consensus 214 ~~~-----------~~~A~~~~~~al~~~p~~~~~~~~lg~~ 244 (324)
.+. |++|..+|++|+..+|++...+..|..+
T Consensus 82 ~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 82 LAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 743 7789999999999999998877776554
No 184
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.63 E-value=2.1e-07 Score=61.76 Aligned_cols=73 Identities=14% Similarity=0.069 Sum_probs=49.9
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIA 129 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la 129 (324)
...++..+|.+|..+|+|++|+++|++++ .. ....++.....+.++.++|
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al--------------------------~~----~~~~~~~~~~~a~~~~~lg 53 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKAL--------------------------DI----EEQLGDDHPDTANTLNNLG 53 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH--------------------------HH----HHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------------------HH----HHHHCCCCHHHHHHHHHHH
Confidence 34567788888888888888888887655 11 1111222222356788899
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcC
Q psy8160 130 HLHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 130 ~~~~~~~~~~~A~~~~~~al~~~ 152 (324)
.++...|++++|++++++++++.
T Consensus 54 ~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 54 ECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhh
Confidence 99999999999999999988753
No 185
>KOG1070|consensus
Probab=98.63 E-value=9.1e-06 Score=78.11 Aligned_cols=209 Identities=11% Similarity=0.073 Sum_probs=167.7
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh--cCCCCch----hhHHHHHHHHhcccHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL--IDASPCT----FTKLEGLMFKVNNEYDSAL 104 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al--~~~~~~~----~~~~la~~~~~~~~~~~A~ 104 (324)
.+..+-|++.+..+|+. +-.|.+.-..+...++.++|.+.+++|+ +++.-.. .|..+-++...-|.-+.-.
T Consensus 1441 pesaeDferlvrssPNS---Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~ 1517 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNS---SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLK 1517 (1710)
T ss_pred CcCHHHHHHHHhcCCCc---chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHH
Confidence 44667888889889873 4467777777888999999999999999 7655433 2333344444557778888
Q ss_pred HHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHH
Q psy8160 105 KHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRET 184 (324)
Q Consensus 105 ~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 184 (324)
+.|+++.+-..+- .++..|..+|.....+++|.++++..++..+ .. ..+|...+...+. ..+-+
T Consensus 1518 kVFeRAcqycd~~-----~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~--~~vW~~y~~fLl~-------~ne~~ 1581 (1710)
T KOG1070|consen 1518 KVFERACQYCDAY-----TVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QT--RKVWIMYADFLLR-------QNEAE 1581 (1710)
T ss_pred HHHHHHHHhcchH-----HHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--ch--hhHHHHHHHHHhc-------ccHHH
Confidence 8899888765443 5788899999999999999999999998884 33 3489998888876 33667
Q ss_pred HHHHHHHHHhhhCCc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 185 LAIHCLQKSIEADPK--SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 185 ~A~~~~~~al~~~~~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.|...+.+|+..-|. +.+..-.-+.+-+..|+.+.+...|+-.+...|.-.+.|..+.+.-.+.|. .+.+...|
T Consensus 1582 aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~-~~~vR~lf 1657 (1710)
T KOG1070|consen 1582 AARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGD-IKYVRDLF 1657 (1710)
T ss_pred HHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCC-HHHHHHHH
Confidence 888999999998888 557777888999999999999999999999999999999999999889898 88888888
No 186
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.62 E-value=4e-07 Score=73.19 Aligned_cols=94 Identities=13% Similarity=0.100 Sum_probs=84.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHhHHHHhhcCCCHHHHHHHH--------------HHHHhhH
Q psy8160 204 LYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN---ADTWCSIGNKDFSNNSNREDYHQAL--------------NKYRDLG 266 (324)
Q Consensus 204 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~~A~~~~--------------~~~~~lg 266 (324)
.|+.|.-++..|+|.+|...|..-++..|++ +++++.||.+++.+|+ +++|...| ++++.||
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~-y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGD-YEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhccc-chHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 7888999999999999999999999988876 7889999999999999 99998888 8999999
Q ss_pred HHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhc
Q psy8160 267 DFLVINNIPTSNNNRQCYNSYSTSIASCKHINNN 300 (324)
Q Consensus 267 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 300 (324)
.+....|+.++ |...|+++++..|+.+.+...
T Consensus 223 ~~~~~l~~~d~--A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 223 VSLGRLGNTDE--ACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHhcCHHH--HHHHHHHHHHHCCCCHHHHHH
Confidence 99999999999 999999999999998766543
No 187
>KOG1070|consensus
Probab=98.62 E-value=4.2e-05 Score=73.74 Aligned_cols=207 Identities=9% Similarity=0.009 Sum_probs=127.5
Q ss_pred HHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCC-cccHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q psy8160 70 ALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPC-TFTKLEVRFHIAHLHEVQRKYKTAKDSYEQ 147 (324)
Q Consensus 70 A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 147 (324)
..+.|.+.+ .+|+....|...-......++.+.|.+..+++|...... ...+..+|..+-.+-..-|.-+.-.+.|++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 344555555 677776666665555566677777777777776553222 222333444443333333544555566666
Q ss_pred HHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8160 148 LLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNS 227 (324)
Q Consensus 148 al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 227 (324)
|.+.. . . ..++..|..+|.. .+.+++|.++++..++...+....|..+|..++.+.+-+.|...+.+|
T Consensus 1523 Acqyc--d-~--~~V~~~L~~iy~k-------~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rA 1590 (1710)
T KOG1070|consen 1523 ACQYC--D-A--YTVHLKLLGIYEK-------SEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRA 1590 (1710)
T ss_pred HHHhc--c-h--HHHHHHHHHHHHH-------hhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 66554 1 1 2266666666644 236677777777777766666677777777777777777777777777
Q ss_pred HccCCC--CHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcC
Q psy8160 228 VEKSEG--NADTWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSI 291 (324)
Q Consensus 228 l~~~p~--~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~ 291 (324)
+..-|. +.+.....+.+-++.|+ .+.+...| +.|.-+...-.+.+..+. ....|++++.+.
T Consensus 1591 L~~lPk~eHv~~IskfAqLEFk~GD-aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~--vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1591 LKSLPKQEHVEFISKFAQLEFKYGD-AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKY--VRDLFERVIELK 1664 (1710)
T ss_pred HhhcchhhhHHHHHHHHHHHhhcCC-chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHH--HHHHHHHHHhcC
Confidence 777776 56666667777777777 77666666 566666665556666666 777777776553
No 188
>KOG4555|consensus
Probab=98.61 E-value=8.7e-07 Score=62.62 Aligned_cols=99 Identities=14% Similarity=0.108 Sum_probs=90.9
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Q psy8160 54 HLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLH 132 (324)
Q Consensus 54 ~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~ 132 (324)
+-.-|......|+.+.|++.|.+++ .-|.+..++...+..+..+|+.++|+..+++++....+...+.-.++.+.|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 3445778888999999999999999 999999999999999999999999999999999987777767778999999999
Q ss_pred HHhhcHHHHHHHHHHHHhcC
Q psy8160 133 EVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 133 ~~~~~~~~A~~~~~~al~~~ 152 (324)
...|+.+.|...|+.+-.+.
T Consensus 126 Rl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHhCchHHHHHhHHHHHHhC
Confidence 99999999999999998876
No 189
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.61 E-value=1.1e-07 Score=55.19 Aligned_cols=44 Identities=14% Similarity=0.335 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHH
Q psy8160 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNK 244 (324)
Q Consensus 201 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 244 (324)
|.+|+.+|..|...|++++|+..|+++++.+|+++++|..+|.+
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l 44 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL 44 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence 46789999999999999999999999999999999999999863
No 190
>KOG3617|consensus
Probab=98.58 E-value=8.9e-06 Score=74.36 Aligned_cols=25 Identities=12% Similarity=-0.055 Sum_probs=20.9
Q ss_pred CHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 234 NADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 234 ~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
+|......++.+....+ |++|+..+
T Consensus 1079 Dp~ll~RcadFF~~~~q-yekAV~lL 1103 (1416)
T KOG3617|consen 1079 DPKLLRRCADFFENNQQ-YEKAVNLL 1103 (1416)
T ss_pred CHHHHHHHHHHHHhHHH-HHHHHHHH
Confidence 57777888888888888 99998877
No 191
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.56 E-value=4.5e-07 Score=59.29 Aligned_cols=60 Identities=18% Similarity=0.201 Sum_probs=39.8
Q ss_pred HHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCC
Q psy8160 58 GLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPC 117 (324)
Q Consensus 58 g~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~ 117 (324)
..+|...++|++|++++++++ .+|.+...+...|.++...|++.+|++.+++++...|..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 345666677777777777777 667666666666666666666666666666666665544
No 192
>KOG1586|consensus
Probab=98.56 E-value=1.3e-05 Score=62.64 Aligned_cols=155 Identities=13% Similarity=0.055 Sum_probs=100.8
Q ss_pred hccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHh--cCCCcccHHHHHHHHHHHHHHhhcHHHH
Q psy8160 64 NNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLID--ASPCTFTKLEVRFHIAHLHEVQRKYKTA 141 (324)
Q Consensus 64 ~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A 141 (324)
.+.+++|.++|.++ |+.|....++..|=..|.++-+. ...+....+..+...+.||... ++.+|
T Consensus 27 ~~k~eeAadl~~~A-------------an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eA 92 (288)
T KOG1586|consen 27 SNKYEEAAELYERA-------------ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEA 92 (288)
T ss_pred CcchHHHHHHHHHH-------------HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHH
Confidence 34666777766654 45666666666666666665322 2222223345566667777655 89999
Q ss_pred HHHHHHHHhcCCCCCchh--hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc------HHHHHHHHHHHHH
Q psy8160 142 KDSYEQLLKEDDLPVHLK--ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS------GQSLYLLGRCFAA 213 (324)
Q Consensus 142 ~~~~~~al~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~lg~~~~~ 213 (324)
+.++++++++.-...... +.-+..+|.+|-.. ..++++|+.+|+++-+-.... ...+...+..-..
T Consensus 93 v~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsd------l~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~ 166 (288)
T KOG1586|consen 93 VNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESD------LQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQ 166 (288)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhh------HHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHH
Confidence 999999998861111111 33455667777431 348999999999997644322 2556677777888
Q ss_pred cCCHHHHHHHHHHHHccCCCCHHHH
Q psy8160 214 VGKVHDAFLAYRNSVEKSEGNADTW 238 (324)
Q Consensus 214 ~~~~~~A~~~~~~al~~~p~~~~~~ 238 (324)
.++|.+|+..|+++....-+++-.-
T Consensus 167 leqY~~Ai~iyeqva~~s~~n~LLK 191 (288)
T KOG1586|consen 167 LEQYSKAIDIYEQVARSSLDNNLLK 191 (288)
T ss_pred HHHHHHHHHHHHHHHHHhccchHHH
Confidence 8999999999999988776665443
No 193
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.56 E-value=4.5e-06 Score=60.82 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH 130 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~ 130 (324)
+..++.-|.-.+..|+|++|++.|+. +....|..... ..+...++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~---------------------------------L~~ryP~g~ya-~qAqL~l~y 55 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEA---------------------------------LDTRYPFGEYA-EQAQLDLAY 55 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHH---------------------------------HHhcCCCCccc-HHHHHHHHH
Confidence 34566666666666666666666664 33333433332 256777788
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCCCchh-hHHHHHHHHHHHhhhh--------hcccchhHHHHHHHHHHHhhhCCccH
Q psy8160 131 LHEVQRKYKTAKDSYEQLLKEDDLPVHLK-ADICRQLGWMYHCIDT--------LGEKSHRETLAIHCLQKSIEADPKSG 201 (324)
Q Consensus 131 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~l~~~~~~~~~--------~~~~~~~~~~A~~~~~~al~~~~~~~ 201 (324)
+|+..+++++|+..+++.++++ |.+.. ..+++..|.+++.... .....+...+|...|++.++..|++.
T Consensus 56 ayy~~~~y~~A~a~~~rFirLh--P~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 56 AYYKQGDYEEAIAAYDRFIRLH--PTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHccCHHHHHHHHHHHHHhC--CCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 8888888888888888888887 66654 4577777777765321 11123357789999999999999886
Q ss_pred HH
Q psy8160 202 QS 203 (324)
Q Consensus 202 ~~ 203 (324)
.+
T Consensus 134 ya 135 (142)
T PF13512_consen 134 YA 135 (142)
T ss_pred hH
Confidence 43
No 194
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.56 E-value=4.4e-07 Score=58.41 Aligned_cols=66 Identities=21% Similarity=0.239 Sum_probs=47.9
Q ss_pred HHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHH
Q psy8160 133 EVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGR 209 (324)
Q Consensus 133 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~ 209 (324)
...|++++|+..|++++..+ |++ ..++..++.++.. .|++++|...+++++..+|+++..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~--p~~--~~~~~~la~~~~~-------~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN--PDN--PEARLLLAQCYLK-------QGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT--TTS--HHHHHHHHHHHHH-------TT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC--CCC--HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 45677888888888888777 776 4477777777766 447888888888888888877777666654
No 195
>KOG4648|consensus
Probab=98.55 E-value=5.5e-07 Score=74.14 Aligned_cols=105 Identities=14% Similarity=0.012 Sum_probs=85.1
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHH
Q psy8160 126 FHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLY 205 (324)
Q Consensus 126 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 205 (324)
-..|.-|+.+|.|++|++||.+++..+ |.+ +..+.+.+..|+. ...+..|...+..++.++.....+|.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~--P~N--pV~~~NRA~AYlk-------~K~FA~AE~DC~~AiaLd~~Y~KAYS 169 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVY--PHN--PVYHINRALAYLK-------QKSFAQAEEDCEAAIALDKLYVKAYS 169 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccC--CCC--ccchhhHHHHHHH-------HHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 345788888899999999999988888 755 4477777778876 44788888888999888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHh
Q psy8160 206 LLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSI 241 (324)
Q Consensus 206 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 241 (324)
..|..-..+|+..+|.+.++.++.+.|++.+....+
T Consensus 170 RR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~ 205 (536)
T KOG4648|consen 170 RRMQARESLGNNMEAKKDCETVLALEPKNIELKKSL 205 (536)
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHH
Confidence 888888889999999999999999988876654443
No 196
>KOG3617|consensus
Probab=98.55 E-value=2e-05 Score=72.15 Aligned_cols=200 Identities=12% Similarity=0.080 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHhccHHHHHHHH------------HHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcc
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHL------------TLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTF 119 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~------------~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~ 119 (324)
.+|-+++.++.+.++.+-|.-++ +++..+|....+. .|.+-...|-.++|+..|.+.-+
T Consensus 758 ~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eak--vAvLAieLgMlEeA~~lYr~ckR------- 828 (1416)
T KOG3617|consen 758 SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAK--VAVLAIELGMLEEALILYRQCKR------- 828 (1416)
T ss_pred HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhH--HHHHHHHHhhHHHHHHHHHHHHH-------
Confidence 47888888888887777665543 3444344433332 34555566777777777776532
Q ss_pred cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHH------
Q psy8160 120 TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKS------ 193 (324)
Q Consensus 120 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a------ 193 (324)
+-.+-.+|...|.+.+|.+.-+.--.+. + ..++++.+.-... .++.+.|+++|+++
T Consensus 829 -----~DLlNKlyQs~g~w~eA~eiAE~~DRiH-----L-r~Tyy~yA~~Lea-------r~Di~~AleyyEK~~~hafe 890 (1416)
T KOG3617|consen 829 -----YDLLNKLYQSQGMWSEAFEIAETKDRIH-----L-RNTYYNYAKYLEA-------RRDIEAALEYYEKAGVHAFE 890 (1416)
T ss_pred -----HHHHHHHHHhcccHHHHHHHHhhcccee-----h-hhhHHHHHHHHHh-------hccHHHHHHHHHhcCChHHH
Confidence 2334556667777776665543211111 1 1244444443322 23566666666664
Q ss_pred ----hhhCC----------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 194 ----IEADP----------KSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 194 ----l~~~~----------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
+..+| .++..|...|......|+.+.|+.+|..|-. |+.+-.+..-+|+ .++|-..-
T Consensus 891 v~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~VrI~C~qGk-~~kAa~iA 961 (1416)
T KOG3617|consen 891 VFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMVRIKCIQGK-TDKAARIA 961 (1416)
T ss_pred HHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhheeeEeeccC-chHHHHHH
Confidence 12222 2346677789888999999999999988743 6777777777888 88776666
Q ss_pred ------HHHHhhHHHHHHcCCCCcchHHHHHHHhhh
Q psy8160 260 ------NKYRDLGDFLVINNIPTSNNNRQCYNSYST 289 (324)
Q Consensus 260 ------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~ 289 (324)
.+-+.||..|+..|++.+ |+.+|.+|-.
T Consensus 962 ~esgd~AAcYhlaR~YEn~g~v~~--Av~FfTrAqa 995 (1416)
T KOG3617|consen 962 EESGDKAACYHLARMYENDGDVVK--AVKFFTRAQA 995 (1416)
T ss_pred HhcccHHHHHHHHHHhhhhHHHHH--HHHHHHHHHH
Confidence 677888999999999999 9988877654
No 197
>KOG2471|consensus
Probab=98.53 E-value=1e-05 Score=69.82 Aligned_cols=153 Identities=16% Similarity=0.180 Sum_probs=115.3
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHH-HHhcCCCccc----HHHHHHHH
Q psy8160 55 LRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLC-LIDASPCTFT----KLEVRFHI 128 (324)
Q Consensus 55 ~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~-l~~~~~~~~~----~~~~~~~l 128 (324)
..--..+..+.+...+..-.+.++ +..+......+.+..++..|++..|.+.+... +...+....+ ..-.+.++
T Consensus 210 ~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNl 289 (696)
T KOG2471|consen 210 LYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNL 289 (696)
T ss_pred HhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCc
Confidence 333445677788888888888888 66777778888899999999999999976654 2222221111 22346789
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhc---------CCCC-----CchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHh
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKE---------DDLP-----VHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSI 194 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~---------~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al 194 (324)
|-+++..|.|.-+..+|.+++.. .+.| .+...+++++.|..+.. .|++-.|.++|.++.
T Consensus 290 GcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh-------~grPl~AfqCf~~av 362 (696)
T KOG2471|consen 290 GCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLH-------SGRPLLAFQCFQKAV 362 (696)
T ss_pred ceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHh-------cCCcHHHHHHHHHHH
Confidence 99999999999999999999851 1001 11114588899988865 559999999999999
Q ss_pred hhCCccHHHHHHHHHHHHHc
Q psy8160 195 EADPKSGQSLYLLGRCFAAV 214 (324)
Q Consensus 195 ~~~~~~~~~~~~lg~~~~~~ 214 (324)
.....+|..|..++.|++..
T Consensus 363 ~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 363 HVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred HHHhcCcHHHHHHHHHHHHH
Confidence 99999999999999998764
No 198
>KOG1586|consensus
Probab=98.49 E-value=3.4e-05 Score=60.44 Aligned_cols=137 Identities=12% Similarity=0.055 Sum_probs=94.1
Q ss_pred HhcccHHHHHHHHHHHHHhcCCCcc--cHHHHHHHHHHHHHHh-hcHHHHHHHHHHHHhcCCCCCch--hhHHHHHHHHH
Q psy8160 95 KVNNEYDSALKHLTLCLIDASPCTF--TKLEVRFHIAHLHEVQ-RKYKTAKDSYEQLLKEDDLPVHL--KADICRQLGWM 169 (324)
Q Consensus 95 ~~~~~~~~A~~~~~~~l~~~~~~~~--~~~~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~l~~~ 169 (324)
...++..+|..++++++........ ..+.-+..+|.+|... .++++|+.+|+++-+-....... --..+...+..
T Consensus 84 ykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~y 163 (288)
T KOG1586|consen 84 YKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQY 163 (288)
T ss_pred hhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHH
Confidence 3445888999999988876444331 1123355678888876 89999999999997655211110 01233333333
Q ss_pred HHhhhhhcccchhHHHHHHHHHHHhhhCCccH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q psy8160 170 YHCIDTLGEKSHRETLAIHCLQKSIEADPKSG-------QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTW 238 (324)
Q Consensus 170 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 238 (324)
--. .++|.+|+..|++.....-+++ ..++.-|.|++...+.-.+...+++-.+++|...+..
T Consensus 164 aa~-------leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 164 AAQ-------LEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred HHH-------HHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 322 4499999999999876655544 4556678999999999999999999999999876553
No 199
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.46 E-value=5.8e-05 Score=57.13 Aligned_cols=125 Identities=19% Similarity=0.177 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc--c
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK--S 200 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~ 200 (324)
.-.+.+|......|++.+|...|++++.--- -.+ +..+..++...+. ++++..|...+++..+.+|. +
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~f-A~d--~a~lLglA~Aqfa-------~~~~A~a~~tLe~l~e~~pa~r~ 159 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIF-AHD--AAMLLGLAQAQFA-------IQEFAAAQQTLEDLMEYNPAFRS 159 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhcccc-CCC--HHHHHHHHHHHHh-------hccHHHHHHHHHHHhhcCCccCC
Confidence 3456667777777777777777777664210 222 3355555555544 44677777777777666653 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 201 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
|+....+|+++...|++.+|...|+.++..-|+ +.+....+.-+.++|+ ..+|...+
T Consensus 160 pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr-~~ea~aq~ 216 (251)
T COG4700 160 PDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGR-LREANAQY 216 (251)
T ss_pred CCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcc-hhHHHHHH
Confidence 566666777777777777777777777776663 5555666666667776 66665555
No 200
>KOG3081|consensus
Probab=98.44 E-value=4.4e-05 Score=61.01 Aligned_cols=164 Identities=16% Similarity=0.082 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLH 132 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~ 132 (324)
.+..-|.+|.+.+++++|++.... ..+..+.-+--.++....+.+-|.+..++......+ .++.+||..+
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~----~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided------~tLtQLA~aw 179 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHL----GENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED------ATLTQLAQAW 179 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH------HHHHHHHHHH
Confidence 455667889999999999999885 233344444566777888999999988888765544 3455666555
Q ss_pred HHh----hcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 133 EVQ----RKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 133 ~~~----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
... +....|.-+|+..-+.. |+. ..++.+.+.++.+ ++++++|...++.++..++++|+++.++-
T Consensus 180 v~la~ggek~qdAfyifeE~s~k~--~~T--~~llnG~Av~~l~-------~~~~eeAe~lL~eaL~kd~~dpetL~Nli 248 (299)
T KOG3081|consen 180 VKLATGGEKIQDAFYIFEELSEKT--PPT--PLLLNGQAVCHLQ-------LGRYEEAESLLEEALDKDAKDPETLANLI 248 (299)
T ss_pred HHHhccchhhhhHHHHHHHHhccc--CCC--hHHHccHHHHHHH-------hcCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 433 46788888999887766 554 3488888888877 55999999999999999999999999999
Q ss_pred HHHHHcCCHHHHH-HHHHHHHccCCCCHHH
Q psy8160 209 RCFAAVGKVHDAF-LAYRNSVEKSEGNADT 237 (324)
Q Consensus 209 ~~~~~~~~~~~A~-~~~~~al~~~p~~~~~ 237 (324)
.+-...|...++. ....+....+|+++-.
T Consensus 249 v~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 249 VLALHLGKDAEVTERNLSQLKLSHPEHPFV 278 (299)
T ss_pred HHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence 9988888876655 5566777778887643
No 201
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.43 E-value=7.4e-07 Score=59.13 Aligned_cols=65 Identities=20% Similarity=0.401 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC----Cc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD----PK---SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKS 231 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 231 (324)
+.++..+|.+|.. .+++++|+.+|++++++. +. ...++.++|.++...|++++|+.++++++++.
T Consensus 5 a~~~~~la~~~~~-------~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 5 ANAYNNLARVYRE-------LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHH-------TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 5689999999977 559999999999998652 22 24678999999999999999999999998753
No 202
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.41 E-value=1.5e-06 Score=75.10 Aligned_cols=67 Identities=18% Similarity=0.217 Sum_probs=61.6
Q ss_pred CCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHH---HHHHHHHHHHcCCHHHHHHHHHHHHcc
Q psy8160 155 PVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQS---LYLLGRCFAAVGKVHDAFLAYRNSVEK 230 (324)
Q Consensus 155 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~lg~~~~~~~~~~~A~~~~~~al~~ 230 (324)
|++ +.+++++|..++. .+++++|+..|+++++++|++.++ |+++|.+|..+|++++|+.++++|+++
T Consensus 72 P~~--a~a~~NLG~AL~~-------lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKT--AEDAVNLGLSLFS-------KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCC--HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 554 6699999999977 559999999999999999999865 999999999999999999999999997
No 203
>KOG2053|consensus
Probab=98.39 E-value=0.00023 Score=65.97 Aligned_cols=238 Identities=16% Similarity=0.085 Sum_probs=141.2
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
.+|+.-..++++..|+.+ -+...-|....++|..++|..+++..- ..+++......+-.+|...+++++|..+|++
T Consensus 26 kkal~~~~kllkk~Pn~~---~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~ 102 (932)
T KOG2053|consen 26 KKALAKLGKLLKKHPNAL---YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYER 102 (932)
T ss_pred HHHHHHHHHHHHHCCCcH---HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 788888888888887633 345566778888888888887776555 6666667777788888888888888888888
Q ss_pred HHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchh----HHH
Q psy8160 110 CLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHR----ETL 185 (324)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~ 185 (324)
++...|. . +....+=.+|.+.+.|.+-...--+..+.. |+.. ...|.-+..+.... .+..... ..-
T Consensus 103 ~~~~~P~-e----ell~~lFmayvR~~~yk~qQkaa~~LyK~~--pk~~-yyfWsV~Slilqs~--~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 103 ANQKYPS-E----ELLYHLFMAYVREKSYKKQQKAALQLYKNF--PKRA-YYFWSVISLILQSI--FSENELLDPILLAL 172 (932)
T ss_pred HHhhCCc-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--Cccc-chHHHHHHHHHHhc--cCCcccccchhHHH
Confidence 8887776 3 566666666777777765544444444444 5441 22344444333221 1111111 123
Q ss_pred HHHHHHHHhhhC-CccH--HHHHHHHHHHHHcCCHHHHHHHHH-HHHccCC-CCHHHHHHhHHHHhhcCCCHHHHHHHHH
Q psy8160 186 AIHCLQKSIEAD-PKSG--QSLYLLGRCFAAVGKVHDAFLAYR-NSVEKSE-GNADTWCSIGNKDFSNNSNREDYHQALN 260 (324)
Q Consensus 186 A~~~~~~al~~~-~~~~--~~~~~lg~~~~~~~~~~~A~~~~~-~al~~~p-~~~~~~~~lg~~~~~~~~~~~~A~~~~~ 260 (324)
|....++.++.. +-.. +.. ..-.+....|++++|+..+. ...+..+ .+...-...+..+...++ |.+-
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~-w~~l----- 245 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEII-LYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNR-WQEL----- 245 (932)
T ss_pred HHHHHHHHhccCCccchHHHHH-HHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcC-hHHH-----
Confidence 445555555544 2221 222 22345667788888888873 3233333 333333344566666677 6553
Q ss_pred HHHhhHHHHHHcCC-CCcchHHHHHHHhhhcC
Q psy8160 261 KYRDLGDFLVINNI-PTSNNNRQCYNSYSTSI 291 (324)
Q Consensus 261 ~~~~lg~~~~~~~~-~~~~~A~~~~~~al~~~ 291 (324)
..-.+.+..+.++ |.. +.+.+.++++..
T Consensus 246 -~~l~~~Ll~k~~Ddy~~--~~~sv~klLe~~ 274 (932)
T KOG2053|consen 246 -FELSSRLLEKGNDDYKI--YTDSVFKLLELL 274 (932)
T ss_pred -HHHHHHHHHhCCcchHH--HHHHHHHHHHhc
Confidence 2223444445554 667 778777777765
No 204
>KOG2796|consensus
Probab=98.38 E-value=0.00014 Score=58.09 Aligned_cols=126 Identities=14% Similarity=0.061 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhh----C-
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA----D- 197 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~- 197 (324)
.+.+.+..++...|+|.-+++.+.++++.+ |.. ++.....+|.+.++ .|+.+.|..++++.-+. +
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~--~e~-~p~L~s~Lgr~~MQ-------~GD~k~a~~yf~~vek~~~kL~~ 247 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYY--PEQ-EPQLLSGLGRISMQ-------IGDIKTAEKYFQDVEKVTQKLDG 247 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhC--Ccc-cHHHHHHHHHHHHh-------cccHHHHHHHHHHHHHHHhhhhc
Confidence 456666777777788888888888877765 332 25567777777766 44677777777744321 1
Q ss_pred -CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 198 -PKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 198 -~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.....+..+.+.++...+++.+|...|.+++..||.++.+..+-+.|....|+ ..+|++..
T Consensus 248 ~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~-l~DAiK~~ 309 (366)
T KOG2796|consen 248 LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGK-LKDALKQL 309 (366)
T ss_pred cchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHH-HHHHHHHH
Confidence 12234555667777777788888888888888888888777777777777777 66666655
No 205
>KOG2796|consensus
Probab=98.38 E-value=6.4e-05 Score=60.05 Aligned_cols=134 Identities=13% Similarity=0.102 Sum_probs=110.5
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc----CCCCCchhhHHHHH
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE----DDLPVHLKADICRQ 165 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~~~~ 165 (324)
+..++.-.|+|.-+...+.+++..+|+.. +.....+|.+..+.||.+.|..+|+++-+. +..... ..+..+
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~---p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~--~~V~~n 257 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQE---PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGK--IMVLMN 257 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCccc---HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchh--HHHHhh
Confidence 56777778999999999999998775554 367788999999999999999999965433 322222 336666
Q ss_pred HHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q psy8160 166 LGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA 235 (324)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 235 (324)
.+.+|.. .+++..|...+.+++..||.++.+-.+.+.|..-.|+..+|++..+.++...|...
T Consensus 258 ~a~i~lg-------~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 258 SAFLHLG-------QNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhheec-------ccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 7777744 45899999999999999999999999999999999999999999999999999753
No 206
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.34 E-value=3.9e-07 Score=49.37 Aligned_cols=32 Identities=19% Similarity=0.390 Sum_probs=16.9
Q ss_pred HHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHH
Q psy8160 224 YRNSVEKSEGNADTWCSIGNKDFSNNSNREDYH 256 (324)
Q Consensus 224 ~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~ 256 (324)
|+++++++|+++.+|+++|.+|...|+ +++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~-~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGD-YEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcC-HHhhc
Confidence 445555555555555555555555555 55543
No 207
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.34 E-value=0.00024 Score=53.87 Aligned_cols=128 Identities=14% Similarity=0.140 Sum_probs=67.4
Q ss_pred hHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHH
Q psy8160 87 TKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQL 166 (324)
Q Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l 166 (324)
...+|......|++.+|..+|++++.-.-.. .+..+..++...+..+++..|...+++..+-+ |....++....+
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~---d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~Ll~ 166 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAH---DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGHLLF 166 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCC---CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCchHHH
Confidence 3345555566666666666666665321111 12445555566666666666666666655554 333223444555
Q ss_pred HHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8160 167 GWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNS 227 (324)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 227 (324)
|+.+.. .|++.+|...|+.++...| .+.+....+..+..+|+.++|...+...
T Consensus 167 aR~laa-------~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 167 ARTLAA-------QGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHh-------cCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 555533 2356666666666665554 3444555555556666555555544443
No 208
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.33 E-value=5.6e-07 Score=48.74 Aligned_cols=34 Identities=24% Similarity=0.499 Sum_probs=31.7
Q ss_pred HHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHH
Q psy8160 189 CLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFL 222 (324)
Q Consensus 189 ~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~ 222 (324)
+|+++++++|+++.+|+++|.++...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 4789999999999999999999999999999863
No 209
>KOG1585|consensus
Probab=98.28 E-value=0.00026 Score=56.04 Aligned_cols=27 Identities=19% Similarity=0.141 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLL 149 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al 149 (324)
..+..-+.+|...++|++|..++.++.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 444444555555555555555555555
No 210
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.25 E-value=1.7e-06 Score=47.07 Aligned_cols=34 Identities=24% Similarity=0.494 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q psy8160 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 201 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 234 (324)
+.+|+.+|.++..+|++++|+..|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999974
No 211
>KOG1585|consensus
Probab=98.23 E-value=0.00078 Score=53.40 Aligned_cols=231 Identities=10% Similarity=-0.014 Sum_probs=146.7
Q ss_pred HHHHHHHHHhc-cCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCc------hhhHHHHHHHHhcccHHHH
Q psy8160 32 KAIKTFQQLLY-VDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPC------TFTKLEGLMFKVNNEYDSA 103 (324)
Q Consensus 32 ~A~~~~~~~l~-~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~------~~~~~la~~~~~~~~~~~A 103 (324)
++.+...+... -.|++......+..-+.+|...++|++|..++.+++ -...+. .++...+.+......+.++
T Consensus 11 ea~e~~a~t~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEv 90 (308)
T KOG1585|consen 11 EADEMTALTLTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEV 90 (308)
T ss_pred HHHHHHHHHhhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34444333333 457777778889999999999999999999999998 333322 2234457777788899999
Q ss_pred HHHHHHHHHhcCCCc--ccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh--hHHHHHHHHHHHhhhhhccc
Q psy8160 104 LKHLTLCLIDASPCT--FTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK--ADICRQLGWMYHCIDTLGEK 179 (324)
Q Consensus 104 ~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~ 179 (324)
...|+++......+. .+.+.++-.-|.+. ...++++|+..|++++..-...+..+ .+.+...+.++..
T Consensus 91 vdl~eKAs~lY~E~GspdtAAmaleKAak~l-env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVr------- 162 (308)
T KOG1585|consen 91 VDLYEKASELYVECGSPDTAAMALEKAAKAL-ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVR------- 162 (308)
T ss_pred HHHHHHHHHHHHHhCCcchHHHHHHHHHHHh-hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhh-------
Confidence 999999966533222 23334444445544 44579999999999987642222222 3345555566644
Q ss_pred chhHHHHHHHHHHHhh----h--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC----CCCHHHHHHhHHHHhhcC
Q psy8160 180 SHRETLAIHCLQKSIE----A--DPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKS----EGNADTWCSIGNKDFSNN 249 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~----~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~~ 249 (324)
...+.+|-..+.+-.. . .+.....+...-.+|....+|..|..+|+..-++. |++..+.-+|-..| ..|
T Consensus 163 l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~g 241 (308)
T KOG1585|consen 163 LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEG 241 (308)
T ss_pred hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccC
Confidence 3377777766666432 2 23333455555566777789999999999976643 44555666664444 456
Q ss_pred CCHHHHHHHH--HHHHhhHHHHHHc
Q psy8160 250 SNREDYHQAL--NKYRDLGDFLVIN 272 (324)
Q Consensus 250 ~~~~~A~~~~--~~~~~lg~~~~~~ 272 (324)
+ .++..+.+ .+..++-+-|.+.
T Consensus 242 D-~E~~~kvl~sp~~r~MDneya~l 265 (308)
T KOG1585|consen 242 D-IEEIKKVLSSPTVRNMDNEYAHL 265 (308)
T ss_pred C-HHHHHHHHcChHhhhhhHHHHHH
Confidence 6 77777776 4444444444433
No 212
>KOG1550|consensus
Probab=98.23 E-value=0.0008 Score=62.01 Aligned_cols=175 Identities=22% Similarity=0.285 Sum_probs=123.5
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHh-----ccHHHHHHHHHHHhc------CCCCchhhHHHHHHHHhcc-
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVN-----NEYDSALKHLTLCLI------DASPCTFTKLEGLMFKVNN- 98 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~-----~~~~~A~~~~~~al~------~~~~~~~~~~la~~~~~~~- 98 (324)
..|..+|+.+-+.. ...+...+|.||..- .|.+.|+.+|+.+.. .-....+...+|.+|....
T Consensus 229 ~~a~~~~~~~a~~g-----~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 229 SEAFKYYREAAKLG-----HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hHHHHHHHHHHhhc-----chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCC
Confidence 46788888777665 455778889888753 689999999998852 1224446667888888753
Q ss_pred ----cHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhh---cHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHH
Q psy8160 99 ----EYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQR---KYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYH 171 (324)
Q Consensus 99 ----~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~ 171 (324)
++..|.+.|.++-....+ ++.+.+|.++.... +...|..+|..+.... + ..+.+.++.+|.
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~~------~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G----~--~~A~~~la~~y~ 371 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGNP------DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG----H--ILAIYRLALCYE 371 (552)
T ss_pred CccccHHHHHHHHHHHHhcCCc------hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC----C--hHHHHHHHHHHH
Confidence 788899999988765444 56889999988665 5789999999998765 2 338899999996
Q ss_pred hhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Q psy8160 172 CIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAV-GKVHDAFLAYRNS 227 (324)
Q Consensus 172 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~-~~~~~A~~~~~~a 227 (324)
.- .| ...+...|..++.++.+.. ++.+.+.++..+... +.++.+...+...
T Consensus 372 ~G--~g-v~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~ 423 (552)
T KOG1550|consen 372 LG--LG-VERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYL 423 (552)
T ss_pred hC--CC-cCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHH
Confidence 63 11 1337889999999998887 455555555444433 5555554444333
No 213
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.21 E-value=3.4e-06 Score=45.82 Aligned_cols=34 Identities=21% Similarity=0.493 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q psy8160 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 201 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 234 (324)
+.+|+.+|.++...|++++|+.+|++++.++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999985
No 214
>KOG4555|consensus
Probab=98.17 E-value=3.2e-05 Score=54.87 Aligned_cols=89 Identities=9% Similarity=0.088 Sum_probs=68.5
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH----HHHHHhHHHHhhcCCCHHHH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA----DTWCSIGNKDFSNNSNREDY 255 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~~~~~~~A 255 (324)
-++.+.|++.|.+++.+.|..+.+|.+.+..+.-+|+.++|+.-+++++++..... .+++..|.+|...|+ -+.|
T Consensus 56 ~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~-dd~A 134 (175)
T KOG4555|consen 56 AGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN-DDAA 134 (175)
T ss_pred ccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc-hHHH
Confidence 44889999999999999999999999999999999999999999999998765443 345566777777777 6666
Q ss_pred HHHHHHHHhhHHHH
Q psy8160 256 HQALNKYRDLGDFL 269 (324)
Q Consensus 256 ~~~~~~~~~lg~~~ 269 (324)
...|+.-..||.-+
T Consensus 135 R~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 135 RADFEAAAQLGSKF 148 (175)
T ss_pred HHhHHHHHHhCCHH
Confidence 66665555555433
No 215
>KOG2471|consensus
Probab=98.16 E-value=2.2e-05 Score=67.82 Aligned_cols=122 Identities=13% Similarity=0.064 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH-HccCCC--------CHHHHHHhHHHHhhcCCCH
Q psy8160 182 RETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNS-VEKSEG--------NADTWCSIGNKDFSNNSNR 252 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a-l~~~p~--------~~~~~~~lg~~~~~~~~~~ 252 (324)
+...+..-.+.++....+++.+....++.++..|++.+|.+.+... +...|. ...+|.++|.++++.+. |
T Consensus 221 ~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~-y 299 (696)
T KOG2471|consen 221 NLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGC-Y 299 (696)
T ss_pred HHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhh-H
Confidence 5666777777777777888899999999999999999999987554 222333 23467899999999999 9
Q ss_pred HHHHHHH-----------------------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhh
Q psy8160 253 EDYHQAL-----------------------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDF 303 (324)
Q Consensus 253 ~~A~~~~-----------------------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 303 (324)
.-+...| ++.++.|..|...|++.. |.++|.++......+|.+|-+++.
T Consensus 300 ~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~--AfqCf~~av~vfh~nPrlWLRlAE 377 (696)
T KOG2471|consen 300 QASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLL--AFQCFQKAVHVFHRNPRLWLRLAE 377 (696)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHH--HHHHHHHHHHHHhcCcHHHHHHHH
Confidence 8877776 889999999999999999 999999999999999999999987
Q ss_pred hcc
Q psy8160 304 SNN 306 (324)
Q Consensus 304 ~~~ 306 (324)
-+.
T Consensus 378 cCi 380 (696)
T KOG2471|consen 378 CCI 380 (696)
T ss_pred HHH
Confidence 665
No 216
>KOG4642|consensus
Probab=98.16 E-value=9.9e-06 Score=63.53 Aligned_cols=79 Identities=13% Similarity=0.149 Sum_probs=75.9
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
..++..|+.+|.+++.++|..+..|.+.+.|+++.++++.+....+++++++|+.....+.+|.+..+... +++||..+
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~-~~eaI~~L 101 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG-YDEAIKVL 101 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc-ccHHHHHH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999 99999988
No 217
>KOG4642|consensus
Probab=98.14 E-value=7e-06 Score=64.38 Aligned_cols=91 Identities=13% Similarity=0.169 Sum_probs=80.4
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
|..++...+|..|+++|.++|.++ |.. +..+.+.+.++++ ..+++.+....+++++++|+.....+.+|
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~n--P~~--~~Y~tnralchlk-------~~~~~~v~~dcrralql~~N~vk~h~flg 85 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICIN--PTV--ASYYTNRALCHLK-------LKHWEPVEEDCRRALQLDPNLVKAHYFLG 85 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcC--CCc--chhhhhHHHHHHH-------hhhhhhhhhhHHHHHhcChHHHHHHHHHH
Confidence 677778888999999999999999 765 4588888999987 44899999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHcc
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEK 230 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~ 230 (324)
.+......+++|+..+.+|..+
T Consensus 86 ~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 86 QWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHHHhhccccHHHHHHHHHHHH
Confidence 9999999999999999999654
No 218
>KOG2300|consensus
Probab=98.13 E-value=0.0047 Score=53.89 Aligned_cols=116 Identities=20% Similarity=0.289 Sum_probs=95.0
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHH-HHHhccHHHHHHHHHHHh-cC---CCCc----hhhHHHHHHHHhcc-cH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLM-FKVNNEYDSALKHLTLCL-ID---ASPC----TFTKLEGLMFKVNN-EY 100 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~-~~~~~~~~~A~~~~~~al-~~---~~~~----~~~~~la~~~~~~~-~~ 100 (324)
.++++..+..+...|.+...+..+..+|.+ +....+++.|..+++++. +- |+.. .+..++++++.... .+
T Consensus 26 kk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~ 105 (629)
T KOG2300|consen 26 KKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSF 105 (629)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCC
Confidence 789999999999998776666778899876 457889999999999998 43 4442 23445888888877 78
Q ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy8160 101 DSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYE 146 (324)
Q Consensus 101 ~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 146 (324)
..+...+.+++......+.......++++.++...+++..|++.+.
T Consensus 106 ~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLa 151 (629)
T KOG2300|consen 106 PPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLA 151 (629)
T ss_pred chHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence 9999999999988777777777889999999999999999998843
No 219
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.12 E-value=0.00031 Score=61.33 Aligned_cols=171 Identities=13% Similarity=0.031 Sum_probs=111.5
Q ss_pred HHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc-----------
Q psy8160 132 HEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS----------- 200 (324)
Q Consensus 132 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~----------- 200 (324)
.....+...-++.-++|++++ |+. ++++.-++.-... ...+|+.+++++++.....
T Consensus 178 AWRERnp~aRIkaA~eALei~--pdC--AdAYILLAEEeA~---------Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g 244 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALEIN--PDC--ADAYILLAEEEAS---------TIVEAEELLRQAVKAGEASLGKSQFLQHHG 244 (539)
T ss_pred HHhcCCHHHHHHHHHHHHHhh--hhh--hHHHhhccccccc---------CHHHHHHHHHHHHHHHHHhhchhhhhhccc
Confidence 456677888888889999998 776 4466665542211 3455666666655431110
Q ss_pred --------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--CHHHHHHhHHHHhhcCCCHHHHHHHH-----
Q psy8160 201 --------------GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG--NADTWCSIGNKDFSNNSNREDYHQAL----- 259 (324)
Q Consensus 201 --------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~~~A~~~~----- 259 (324)
..+...+|.|..+.|+.++|++.++..++..|. +..+..+|..++...+. |.++...+
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~-Yad~q~lL~kYdD 323 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQA-YADVQALLAKYDD 323 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCC-HHHHHHHHHHhcc
Confidence 134567899999999999999999999988775 46688999999999999 99998777
Q ss_pred -------HHHHhhHHHH-HHcCCC-------------CcchHHHHHHHhhhcCCChhhhhhchhhhc-----cCChhhHH
Q psy8160 260 -------NKYRDLGDFL-VINNIP-------------TSNNNRQCYNSYSTSIASCKHINNNKDFSN-----NSNREDYH 313 (324)
Q Consensus 260 -------~~~~~lg~~~-~~~~~~-------------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-----~~~~~~~~ 313 (324)
...+.-+.+- +..++. .+..|++...+|++.+|.-|...-.+.-+- ...+|| .
T Consensus 324 i~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD-S 402 (539)
T PF04184_consen 324 ISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD-S 402 (539)
T ss_pred ccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc-H
Confidence 1112222221 111111 111377899999999998776544333221 155665 5
Q ss_pred HHHH
Q psy8160 314 QALN 317 (324)
Q Consensus 314 ~a~~ 317 (324)
+|+.
T Consensus 403 EAia 406 (539)
T PF04184_consen 403 EAIA 406 (539)
T ss_pred HHHH
Confidence 5543
No 220
>KOG2053|consensus
Probab=98.11 E-value=0.0087 Score=56.02 Aligned_cols=214 Identities=13% Similarity=-0.059 Sum_probs=147.8
Q ss_pred HHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHH
Q psy8160 62 KVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKT 140 (324)
Q Consensus 62 ~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 140 (324)
...++|.+|+....+.+ ..|+...+..+.|.+....|+.++|..+++..-...+.+ ...+..+-.||..++++++
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D----~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTD----DLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCc----hHHHHHHHHHHHHHhhhhH
Confidence 45689999999999999 999999999999999999999999997776543333332 2567778899999999999
Q ss_pred HHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCH---
Q psy8160 141 AKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKV--- 217 (324)
Q Consensus 141 A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~--- 217 (324)
|..+|++++..+ |+ .+ ...++=.+|.+. ++-..+.+.|++.|+..=+.. . ..|.-+..+.......
T Consensus 96 ~~~~Ye~~~~~~--P~-ee--ll~~lFmayvR~---~~yk~qQkaa~~LyK~~pk~~-y--yfWsV~Slilqs~~~~~~~ 164 (932)
T KOG2053|consen 96 AVHLYERANQKY--PS-EE--LLYHLFMAYVRE---KSYKKQQKAALQLYKNFPKRA-Y--YFWSVISLILQSIFSENEL 164 (932)
T ss_pred HHHHHHHHHhhC--Cc-HH--HHHHHHHHHHHH---HHHHHHHHHHHHHHHhCCccc-c--hHHHHHHHHHHhccCCccc
Confidence 999999999999 87 44 444443344321 111335666777777664332 1 2333333333333222
Q ss_pred ------HHHHHHHHHHHccC-CCC--HHHHHHhHHHHhhcCCCHHHHHHHH-------------HHHHhhHHHHHHcCCC
Q psy8160 218 ------HDAFLAYRNSVEKS-EGN--ADTWCSIGNKDFSNNSNREDYHQAL-------------NKYRDLGDFLVINNIP 275 (324)
Q Consensus 218 ------~~A~~~~~~al~~~-p~~--~~~~~~lg~~~~~~~~~~~~A~~~~-------------~~~~~lg~~~~~~~~~ 275 (324)
.-|...+++.++.. +-. .+... .-.+....|. +++|...+ ..-...+..+...+++
T Consensus 165 ~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~L-yl~iL~~~~k-~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w 242 (932)
T KOG2053|consen 165 LDPILLALAEKMVQKLLEKKGKIESEAEIIL-YLLILELQGK-YQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRW 242 (932)
T ss_pred ccchhHHHHHHHHHHHhccCCccchHHHHHH-HHHHHHhccc-HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcCh
Confidence 23566777777666 322 22222 2345667888 99999888 1122456778888999
Q ss_pred CcchHHHHHHHhhhcCCCh
Q psy8160 276 TSNNNRQCYNSYSTSIASC 294 (324)
Q Consensus 276 ~~~~A~~~~~~al~~~p~~ 294 (324)
.+ -.+.-.+++..+|+|
T Consensus 243 ~~--l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 243 QE--LFELSSRLLEKGNDD 259 (932)
T ss_pred HH--HHHHHHHHHHhCCcc
Confidence 99 999999999999997
No 221
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.11 E-value=2.7e-06 Score=46.27 Aligned_cols=33 Identities=12% Similarity=0.040 Sum_probs=29.7
Q ss_pred HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCCh
Q psy8160 260 NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASC 294 (324)
Q Consensus 260 ~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (324)
.+|+++|.+|..+|++++ |+.+|++|++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~--A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEE--ALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHH--HHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchH--HHHHHHHHHHHCcCC
Confidence 478999999999999999 999999999999985
No 222
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.09 E-value=3.5e-06 Score=48.82 Aligned_cols=42 Identities=5% Similarity=-0.153 Sum_probs=38.1
Q ss_pred HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhh
Q psy8160 260 NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDF 303 (324)
Q Consensus 260 ~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 303 (324)
.+|..+|.+|...|++++ |++.|+++++.+|+|+.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~--A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDE--AERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHH--HHHHHHHHHHHCcCCHHHHHHhhh
Confidence 368899999999999999 999999999999999999887753
No 223
>KOG2610|consensus
Probab=98.09 E-value=0.0005 Score=57.02 Aligned_cols=146 Identities=12% Similarity=0.045 Sum_probs=102.9
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhh-CCccH---HHH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA-DPKSG---QSL 204 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~~~~~---~~~ 204 (324)
+-+.+..|++-+|-...+++++.. |.+..+.-...-+..| .|+...-...+++++.. +|+-| ...
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~--PtDlla~kfsh~a~fy---------~G~~~~~k~ai~kIip~wn~dlp~~sYv~ 178 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDY--PTDLLAVKFSHDAHFY---------NGNQIGKKNAIEKIIPKWNADLPCYSYVH 178 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhC--chhhhhhhhhhhHHHh---------ccchhhhhhHHHHhccccCCCCcHHHHHH
Confidence 344566778888888888888887 8775533333333333 33666677778887766 55544 222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH---------------HHHHhhHHHH
Q psy8160 205 YLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL---------------NKYRDLGDFL 269 (324)
Q Consensus 205 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~---------------~~~~~lg~~~ 269 (324)
-.++.++.+.|-|++|.+..+++++++|.+..+.-..+.++...++ +.++.+.. .-|...+.++
T Consensus 179 GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r-~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~ 257 (491)
T KOG2610|consen 179 GMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGR-HKEGKEFMYKTEDDWRQSWMLASHNYWHTALFH 257 (491)
T ss_pred HHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcch-hhhHHHHHHhcccchhhhhHHHhhhhHHHHHhh
Confidence 2345667778888888888888888888888888888888888888 88888776 3445567777
Q ss_pred HHcCCCCcchHHHHHHHhh
Q psy8160 270 VINNIPTSNNNRQCYNSYS 288 (324)
Q Consensus 270 ~~~~~~~~~~A~~~~~~al 288 (324)
...+.++. |++.|.+-+
T Consensus 258 iE~aeye~--aleIyD~ei 274 (491)
T KOG2610|consen 258 IEGAEYEK--ALEIYDREI 274 (491)
T ss_pred hcccchhH--HHHHHHHHH
Confidence 77788888 888886654
No 224
>KOG0551|consensus
Probab=98.06 E-value=7.4e-05 Score=61.61 Aligned_cols=105 Identities=13% Similarity=0.098 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG 201 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 201 (324)
+.-+-.-|.-|+..++|..|+.+|.+.|+......++.+..|.+.+-+.+. .++|..|+....+++..+|.+.
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~-------l~NyRs~l~Dcs~al~~~P~h~ 153 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY-------LGNYRSALNDCSAALKLKPTHL 153 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH-------HHHHHHHHHHHHHHHhcCcchh
Confidence 344555578888888888888888888876632334456677777766655 4488888888888888888888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG 233 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 233 (324)
.+++.-+.|++.+.++.+|..+++..+.++.+
T Consensus 154 Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 154 KAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 88888888888888888888888877766543
No 225
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.03 E-value=0.00046 Score=57.82 Aligned_cols=137 Identities=11% Similarity=0.017 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHh-cccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKV-NNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH 130 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~ 130 (324)
+|..+.....+.+..+.|...|.+|. ..+.....+...|.+-.. .++.+.|.+.|+.+++..+.+. +.|.....
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~----~~~~~Y~~ 78 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP----DFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H----HHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH----HHHHHHHH
Confidence 46666677777777888888888888 555666777777777555 5666678888888888777665 77777778
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCCCch-hhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHH
Q psy8160 131 LHEVQRKYKTAKDSYEQLLKEDDLPVHL-KADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQ 202 (324)
Q Consensus 131 ~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 202 (324)
.+...++.+.|...|++++..- +... ...+|......-.. .|+.+......+++.+..|.+..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l--~~~~~~~~iw~~~i~fE~~-------~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSL--PKEKQSKKIWKKFIEFESK-------YGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTS--SCHHHCHHHHHHHHHHHHH-------HS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHhhhhhH
Confidence 8888888888999999888764 5443 12344443333322 34777788888888888777543
No 226
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.00 E-value=1.5e-05 Score=43.14 Aligned_cols=32 Identities=22% Similarity=0.378 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCC
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHLTLCL-IDASP 83 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~ 83 (324)
++++.+|.++..+|++++|+++|++++ ++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 578999999999999999999999999 88874
No 227
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.00 E-value=0.00063 Score=61.25 Aligned_cols=180 Identities=15% Similarity=0.145 Sum_probs=122.1
Q ss_pred HHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhc-C-CCCchhhHHH-------HHHHH---hcccHH
Q psy8160 34 IKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLI-D-ASPCTFTKLE-------GLMFK---VNNEYD 101 (324)
Q Consensus 34 ~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~-~~~~~~~~~l-------a~~~~---~~~~~~ 101 (324)
.-.|+-++++-|. . ...+-.+.--.||-+.+++.+.++.. . -..+.+...+ ...+. ...+.+
T Consensus 177 ~G~f~L~lSlLPp--~----~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 177 FGLFNLVLSLLPP--K----VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHhCCH--H----HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 3456666666652 1 23333333346888999999988872 2 2222221111 11111 244677
Q ss_pred HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccch
Q psy8160 102 SALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSH 181 (324)
Q Consensus 102 ~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 181 (324)
.|.+.++......|.+. -..+..|.++...|+.++|++.|++++.....-.....-.++.++|++.. ..
T Consensus 251 ~a~~lL~~~~~~yP~s~----lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~-------~~ 319 (468)
T PF10300_consen 251 EAEELLEEMLKRYPNSA----LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF-------QH 319 (468)
T ss_pred HHHHHHHHHHHhCCCcH----HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH-------Hc
Confidence 88888888888878765 44666799999999999999999988853322333445688889999866 44
Q ss_pred hHHHHHHHHHHHhhhCCccH-HHHHHHHHHHHHcCCH-------HHHHHHHHHHHcc
Q psy8160 182 RETLAIHCLQKSIEADPKSG-QSLYLLGRCFAAVGKV-------HDAFLAYRNSVEK 230 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~-~~~~~lg~~~~~~~~~-------~~A~~~~~~al~~ 230 (324)
+|++|..++.+..+.+.-+. ...|..|.|+...++. ++|...+.++-..
T Consensus 320 ~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 320 DWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 99999999999988766544 4456678889999988 8888888887544
No 228
>KOG2610|consensus
Probab=97.96 E-value=0.0011 Score=55.14 Aligned_cols=157 Identities=7% Similarity=-0.046 Sum_probs=114.3
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc-CCCCCchhhHHHHHHHH
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE-DDLPVHLKADICRQLGW 168 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~l~~ 168 (324)
-+.+....|++.+|-..+++.++..|.+. -++-.--..++..|+.+.....+++++.. + ++.+- .-+.-|.
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDl----la~kfsh~a~fy~G~~~~~k~ai~kIip~wn--~dlp~--~sYv~Gm 180 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDL----LAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN--ADLPC--YSYVHGM 180 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhh----hhhhhhhhHHHhccchhhhhhHHHHhccccC--CCCcH--HHHHHHH
Confidence 35566778999999999999999888775 23333445677888888888999999866 4 33211 1122233
Q ss_pred HHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC----HHHHHHhHHH
Q psy8160 169 MYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN----ADTWCSIGNK 244 (324)
Q Consensus 169 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~ 244 (324)
..+.....| -+++|.+.-+++++++|.+.-+...++.++...+++.++.++..+.-..-... ...|..-+.+
T Consensus 181 yaFgL~E~g----~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~ 256 (491)
T KOG2610|consen 181 YAFGLEECG----IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALF 256 (491)
T ss_pred HHhhHHHhc----cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHh
Confidence 333323333 78999999999999999999888889999999999999999887764433322 2234556888
Q ss_pred HhhcCCCHHHHHHHH
Q psy8160 245 DFSNNSNREDYHQAL 259 (324)
Q Consensus 245 ~~~~~~~~~~A~~~~ 259 (324)
+...+. |+.|+..|
T Consensus 257 ~iE~ae-ye~aleIy 270 (491)
T KOG2610|consen 257 HIEGAE-YEKALEIY 270 (491)
T ss_pred hhcccc-hhHHHHHH
Confidence 888899 99999999
No 229
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.90 E-value=0.00056 Score=52.36 Aligned_cols=107 Identities=15% Similarity=0.127 Sum_probs=82.5
Q ss_pred HHHHHHHHhhhCCccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 186 AIHCLQKSIEADPKSG---QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN---ADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 186 A~~~~~~al~~~~~~~---~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.+...++....+|.+. -+-..++..+...+++++|+..++.++....+. +-+-.+|+.+..+.|+ +++|+..+
T Consensus 71 ~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k-~D~AL~~L 149 (207)
T COG2976 71 SIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKK-ADAALKTL 149 (207)
T ss_pred hHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhh-HHHHHHHH
Confidence 3333444444444433 344567889999999999999999998654433 3456789999999999 99999999
Q ss_pred ----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChh
Q psy8160 260 ----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCK 295 (324)
Q Consensus 260 ----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (324)
...-..|.++...|+..+ |+..|+++++.+++.+
T Consensus 150 ~t~~~~~w~~~~~elrGDill~kg~k~~--Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 150 DTIKEESWAAIVAELRGDILLAKGDKQE--ARAAYEKALESDASPA 193 (207)
T ss_pred hccccccHHHHHHHHhhhHHHHcCchHH--HHHHHHHHHHccCChH
Confidence 334567999999999999 9999999999986544
No 230
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.88 E-value=0.0062 Score=51.50 Aligned_cols=172 Identities=20% Similarity=0.233 Sum_probs=124.7
Q ss_pred HHHhccHHHHHHHHHHHh--cCCCCchhhHHHHHHHHhc----ccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Q psy8160 61 FKVNNEYDSALKHLTLCL--IDASPCTFTKLEGLMFKVN----NEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEV 134 (324)
Q Consensus 61 ~~~~~~~~~A~~~~~~al--~~~~~~~~~~~la~~~~~~----~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~ 134 (324)
....+++..|...+..+. .++ .....++.+|... .+..+|...|+.+..... ..+.+.+|.++..
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~~~~---~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~------~~a~~~lg~~~~~ 121 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAELGDA---AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL------AEALFNLGLMYAN 121 (292)
T ss_pred ccccccHHHHHHHHHHhhhcCCh---HHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc------HHHHHhHHHHHhc
Confidence 345678888888888776 223 5566677777654 568889999986654322 2678889999987
Q ss_pred ----hhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhh-hhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHH
Q psy8160 135 ----QRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCID-TLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGR 209 (324)
Q Consensus 135 ----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~ 209 (324)
..+..+|...|+++......+. ..+...+|.+|..-. ..+ ...+...|+..|.++.... ++.+.+.+|.
T Consensus 122 G~gv~~d~~~A~~~~~~Aa~~g~~~a---~~~~~~l~~~~~~g~~~~~-~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~ 195 (292)
T COG0790 122 GRGVPLDLVKALKYYEKAAKLGNVEA---ALAMYRLGLAYLSGLQALA-VAYDDKKALYLYRKAAELG--NPDAQLLLGR 195 (292)
T ss_pred CCCcccCHHHHHHHHHHHHHcCChhH---HHHHHHHHHHHHcChhhhc-ccHHHHhHHHHHHHHHHhc--CHHHHHHHHH
Confidence 4589999999999998762111 224888888886521 011 1224458999999997776 7788899998
Q ss_pred HHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCC
Q psy8160 210 CFAA----VGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNS 250 (324)
Q Consensus 210 ~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 250 (324)
+|.. ..++.+|+.+|.++-+... ...++.++ ++...|.
T Consensus 196 ~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~ 237 (292)
T COG0790 196 MYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGE 237 (292)
T ss_pred HHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCC
Confidence 8865 3588999999999988876 88899999 6666553
No 231
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.87 E-value=0.00052 Score=57.55 Aligned_cols=128 Identities=8% Similarity=-0.017 Sum_probs=101.7
Q ss_pred HHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHccCCCCHHHHHH
Q psy8160 162 ICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAA-VGKVHDAFLAYRNSVEKSEGNADTWCS 240 (324)
Q Consensus 162 ~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~ 240 (324)
+|..+.....+ .+..+.|...|.+|....+-...+|...|.+-.. .++.+.|...|+.+++..|.+++.|..
T Consensus 3 v~i~~m~~~~r-------~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~ 75 (280)
T PF05843_consen 3 VWIQYMRFMRR-------TEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLE 75 (280)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHH-------hCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 45555555544 3468899999999997666778999999999666 566667999999999999999999999
Q ss_pred hHHHHhhcCCCHHHHHHHH--------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhh
Q psy8160 241 IGNKDFSNNSNREDYHQAL--------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINN 299 (324)
Q Consensus 241 lg~~~~~~~~~~~~A~~~~--------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 299 (324)
....+...++ .+.|...| .+|......-.+.|+.+. ..+.++++.+..|++..+..
T Consensus 76 Y~~~l~~~~d-~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~--v~~v~~R~~~~~~~~~~~~~ 145 (280)
T PF05843_consen 76 YLDFLIKLND-INNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLES--VRKVEKRAEELFPEDNSLEL 145 (280)
T ss_dssp HHHHHHHTT--HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHH--HHHHHHHHHHHTTTS-HHHH
T ss_pred HHHHHHHhCc-HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHhhhhhHHHH
Confidence 9999999999 99999888 478888888888899999 99999999999988665433
No 232
>KOG0376|consensus
Probab=97.86 E-value=3.3e-05 Score=66.80 Aligned_cols=108 Identities=19% Similarity=0.137 Sum_probs=91.0
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHH
Q psy8160 128 IAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLL 207 (324)
Q Consensus 128 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 207 (324)
-+...+..+.++.|+..|.++|+++ |+.. ..+...+..+.. .+++..|+..+.++++.+|....+|+..
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ld--pnca--~~~anRa~a~lK-------~e~~~~Al~Da~kaie~dP~~~K~Y~rr 78 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELD--PNCA--IYFANRALAHLK-------VESFGGALHDALKAIELDPTYIKAYVRR 78 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcC--Ccce--eeechhhhhhee-------echhhhHHHHHHhhhhcCchhhheeeec
Confidence 3556677789999999999999999 8773 366666666655 4488889999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHh
Q psy8160 208 GRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDF 246 (324)
Q Consensus 208 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 246 (324)
|......+.+.+|+..|++.....|+++.+...+..|-.
T Consensus 79 g~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 79 GTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred cHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 999999999999999999999999999988877766643
No 233
>KOG0376|consensus
Probab=97.84 E-value=7.3e-06 Score=70.72 Aligned_cols=78 Identities=14% Similarity=0.084 Sum_probs=69.2
Q ss_pred hhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 181 HRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 181 ~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
+.++.|+..|.++++++|+++..+-+.+..+...+++..|+.-+.+|++.+|....+++..|..++..+. +.+|...|
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~-~~~A~~~l 95 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE-FKKALLDL 95 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH-HHHHHHHH
Confidence 3799999999999999999999999999999999999999999999999999998888888888888887 55554444
No 234
>KOG0545|consensus
Probab=97.83 E-value=0.00056 Score=54.24 Aligned_cols=109 Identities=12% Similarity=0.071 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhc------CCCCCchh--------hHHHHHHHHHHHhhhhhcccchhHHHHH
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKE------DDLPVHLK--------ADICRQLGWMYHCIDTLGEKSHRETLAI 187 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~A~ 187 (324)
..++.+-|.-++..|+|.+|...|+.++.. ...|...+ ...+.+.+.|+.. .+++-+++
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~-------~~e~yevl 250 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLK-------KEEYYEVL 250 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhh-------HHHHHHHH
Confidence 357778899999999999999999988743 22244322 1245555566654 45899999
Q ss_pred HHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH
Q psy8160 188 HCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADT 237 (324)
Q Consensus 188 ~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 237 (324)
+.....+..+|.+..+++..|.++...-+..+|...|.++++++|.-..+
T Consensus 251 eh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 251 EHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 99999999999999999999999999999999999999999999975443
No 235
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.82 E-value=0.0022 Score=56.26 Aligned_cols=175 Identities=15% Similarity=0.002 Sum_probs=117.4
Q ss_pred HHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCC--------c--------
Q psy8160 56 RLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPC--------T-------- 118 (324)
Q Consensus 56 ~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~--------~-------- 118 (324)
.+-.-..+..+...-++.-++|+ ++|+.+.++.+||.-.. ....+|++.|+++++..... .
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA--~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~ 250 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEA--STIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW 250 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccc--cCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence 34445567788999999999999 99999999888764211 22345555555554321110 0
Q ss_pred -----ccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHH
Q psy8160 119 -----FTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKS 193 (324)
Q Consensus 119 -----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a 193 (324)
.....+...+|.|....|+.++|++.|+..++.. |......+..++..++.. .+.+.++...+.+-
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~--p~~~~l~IrenLie~LLe-------lq~Yad~q~lL~kY 321 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF--PNLDNLNIRENLIEALLE-------LQAYADVQALLAKY 321 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC--CccchhhHHHHHHHHHHh-------cCCHHHHHHHHHHh
Confidence 0113467789999999999999999999999887 543224477777777766 44788888887775
Q ss_pred hhh-CCccHHHHHHHHHHHHHc-CC---------------HHHHHHHHHHHHccCCCCHHHHHHh
Q psy8160 194 IEA-DPKSGQSLYLLGRCFAAV-GK---------------VHDAFLAYRNSVEKSEGNADTWCSI 241 (324)
Q Consensus 194 l~~-~~~~~~~~~~lg~~~~~~-~~---------------~~~A~~~~~~al~~~p~~~~~~~~l 241 (324)
-+. -|+++...|.-+..-.+. ++ -..|.+.+++|++.+|..|.....+
T Consensus 322 dDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~ 386 (539)
T PF04184_consen 322 DDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEM 386 (539)
T ss_pred ccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhcc
Confidence 333 256666655555443221 11 2347889999999999988776543
No 236
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.81 E-value=0.0033 Score=54.05 Aligned_cols=164 Identities=15% Similarity=0.100 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC--CCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHH-HhhhCC
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKED--DLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQK-SIEADP 198 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~-al~~~~ 198 (324)
+++..++-..|....+|+.-+...+..-... +.+.. ..+.+..|.++.+.+..| +.++|+..+.. .....+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~--~~i~~~yafALnRrn~~g----dre~Al~il~~~l~~~~~ 214 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQ--HNIKFQYAFALNRRNKPG----DREKALQILLPVLESDEN 214 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcc--hHHHHHHHHHHhhcccCC----CHHHHHHHHHHHHhccCC
Confidence 4667777778999999998888887765442 12333 336666776675544455 89999999999 456677
Q ss_pred ccHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHH---------HH-
Q psy8160 199 KSGQSLYLLGRCFAAV---------GKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQ---------AL- 259 (324)
Q Consensus 199 ~~~~~~~~lg~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~---------~~- 259 (324)
.+++.+..+|.+|-.. ...++|+.+|.++.+.+|+. -.-.+++.++...|..++...+ .+
T Consensus 215 ~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~ll 293 (374)
T PF13281_consen 215 PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLL 293 (374)
T ss_pred CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHH
Confidence 8899999999998754 34778999999999999754 2234555555555541222111 11
Q ss_pred ---------HHH---HhhHHHHHHcCCCCcchHHHHHHHhhhcCCCh
Q psy8160 260 ---------NKY---RDLGDFLVINNIPTSNNNRQCYNSYSTSIASC 294 (324)
Q Consensus 260 ---------~~~---~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (324)
.-| -.+..+..-.|++++ |++.+++++++.|..
T Consensus 294 g~kg~~~~~~dYWd~ATl~Ea~vL~~d~~k--a~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 294 GRKGSLEKMQDYWDVATLLEASVLAGDYEK--AIQAAEKAFKLKPPA 338 (374)
T ss_pred HhhccccccccHHHHHHHHHHHHHcCCHHH--HHHHHHHHhhcCCcc
Confidence 111 234445555789999 999999999998753
No 237
>KOG4507|consensus
Probab=97.81 E-value=0.0011 Score=58.97 Aligned_cols=96 Identities=14% Similarity=0.144 Sum_probs=80.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCHH-HHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcC
Q psy8160 206 LLGRCFAAVGKVHDAFLAYRNSVEKSEGNAD-TWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINN 273 (324)
Q Consensus 206 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~ 273 (324)
.-|..+...|+...|++++..|+...|.... ...+|+.+....+. ..+|-..+ -.++.+|..|....
T Consensus 612 ~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~-~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~ 690 (886)
T KOG4507|consen 612 EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGL-HLDATKLLLQALAINSSEPLTFLSLGNAYLALK 690 (886)
T ss_pred cccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhh-hccHHHHHHHHHhhcccCchHHHhcchhHHHHh
Confidence 3466667789999999999999998886544 46788888888887 77776666 56788999999999
Q ss_pred CCCcchHHHHHHHhhhcCCChhhhhhchhhh
Q psy8160 274 IPTSNNNRQCYNSYSTSIASCKHINNNKDFS 304 (324)
Q Consensus 274 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 304 (324)
+.+. |++.|+.|++++|+++.+.+.|..+
T Consensus 691 ~i~~--a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 691 NISG--ALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred hhHH--HHHHHHHHHhcCCCChhhHHHHHHH
Confidence 9999 9999999999999999999887654
No 238
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.81 E-value=3.5e-05 Score=41.74 Aligned_cols=33 Identities=21% Similarity=0.506 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 234 (324)
.+|+.+|.++..+|++++|+..|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 578999999999999999999999999999853
No 239
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.77 E-value=0.0024 Score=57.60 Aligned_cols=152 Identities=11% Similarity=0.057 Sum_probs=107.2
Q ss_pred HhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcc--cchhHHHHHHHHHHHhhhCCccHHHHHHHHHHH
Q psy8160 134 VQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGE--KSHRETLAIHCLQKSIEADPKSGQSLYLLGRCF 211 (324)
Q Consensus 134 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~ 211 (324)
-.||-+.++..+.++.+..+.... -+ .+.-+++...-..-.+. .....+.|...+....+..|+..-.++..|+++
T Consensus 200 F~gdR~~GL~~L~~~~~~~~i~~~-la-~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~ 277 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKSENIRSP-LA-ALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLE 277 (468)
T ss_pred cCCcHHHHHHHHHHHhccCCcchH-HH-HHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 447889999999988764321111 00 11111111100011111 244788999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHccCCCC----HHHHHHhHHHHhhcCCCHHHHHHHH------------HHHHhhHHHHHHcCCC
Q psy8160 212 AAVGKVHDAFLAYRNSVEKSEGN----ADTWCSIGNKDFSNNSNREDYHQAL------------NKYRDLGDFLVINNIP 275 (324)
Q Consensus 212 ~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~~~~~~~A~~~~------------~~~~~lg~~~~~~~~~ 275 (324)
...|+.++|+..|++++...+.- .-.++.+|.++..+.+ |++|..++ --.+..|.++...++.
T Consensus 278 ~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~-w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 278 RLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHD-WEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHch-HHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 99999999999999998543322 3456789999999999 99999999 2235668888888888
Q ss_pred -------CcchHHHHHHHhhhc
Q psy8160 276 -------TSNNNRQCYNSYSTS 290 (324)
Q Consensus 276 -------~~~~A~~~~~~al~~ 290 (324)
++ |.+.|.++-.+
T Consensus 357 ~~~~~~~~~--a~~l~~~vp~l 376 (468)
T PF10300_consen 357 EEAKEHKKE--AEELFRKVPKL 376 (468)
T ss_pred hhhhhhHHH--HHHHHHHHHHH
Confidence 66 77777766544
No 240
>KOG0551|consensus
Probab=97.70 E-value=0.0005 Score=56.86 Aligned_cols=99 Identities=18% Similarity=0.136 Sum_probs=80.2
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWM 169 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~ 169 (324)
-|+-|....+|..|+..|.+.|....++....+.++.+.|-+....|+|..|+....+++..+ |.+.. ++++-+.+
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~--P~h~K--a~~R~Akc 162 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK--PTHLK--AYIRGAKC 162 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC--cchhh--hhhhhhHH
Confidence 477777778888888888888888777776667788899999999999999999999999999 88855 88888888
Q ss_pred HHhhhhhcccchhHHHHHHHHHHHhhhCCc
Q psy8160 170 YHCIDTLGEKSHRETLAIHCLQKSIEADPK 199 (324)
Q Consensus 170 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 199 (324)
++. ..++.+|...++..+.++..
T Consensus 163 ~~e-------Le~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 163 LLE-------LERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHH-------HHHHHHHHHHHhhhhhhhHH
Confidence 877 34777788877777666543
No 241
>KOG3616|consensus
Probab=97.68 E-value=0.0097 Score=54.74 Aligned_cols=33 Identities=12% Similarity=-0.083 Sum_probs=29.1
Q ss_pred HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCCh
Q psy8160 260 NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASC 294 (324)
Q Consensus 260 ~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (324)
+++..++..+...|.+++ |-+.|-.+++++.-|
T Consensus 996 ~vhlk~a~~ledegk~ed--askhyveaiklntyn 1028 (1636)
T KOG3616|consen 996 EVHLKLAMFLEDEGKFED--ASKHYVEAIKLNTYN 1028 (1636)
T ss_pred cchhHHhhhhhhccchhh--hhHhhHHHhhccccc
Confidence 778888999999999999 999999999987644
No 242
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.67 E-value=3.3e-05 Score=41.82 Aligned_cols=33 Identities=9% Similarity=0.024 Sum_probs=29.8
Q ss_pred HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCCh
Q psy8160 260 NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASC 294 (324)
Q Consensus 260 ~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (324)
++|+.+|.+|...|++++ |+.+|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~--A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEE--ALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHH--HHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHH--HHHHHHHHHhhCCCC
Confidence 478999999999999999 999999999999953
No 243
>KOG0545|consensus
Probab=97.67 E-value=0.00051 Score=54.46 Aligned_cols=102 Identities=18% Similarity=0.127 Sum_probs=86.4
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-c--------CCCCchhhH----------HHHHHHHhcccHHHHHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-I--------DASPCTFTK----------LEGLMFKVNNEYDSALKHLTLC 110 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~--------~~~~~~~~~----------~la~~~~~~~~~~~A~~~~~~~ 110 (324)
+..+...-|+-++..|+|++|...|+.|+ . .|....+.. ..+.++...|+|-+++++...+
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 34567788999999999999999999987 3 355554433 3578888889999999999999
Q ss_pred HHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCc
Q psy8160 111 LIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVH 157 (324)
Q Consensus 111 l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 157 (324)
|...|.+. .++|..|..+....+..+|...|.++++.+ |.-
T Consensus 257 L~~~~~nv----KA~frRakAhaa~Wn~~eA~~D~~~vL~ld--psl 297 (329)
T KOG0545|consen 257 LRHHPGNV----KAYFRRAKAHAAVWNEAEAKADLQKVLELD--PSL 297 (329)
T ss_pred HhcCCchH----HHHHHHHHHHHhhcCHHHHHHHHHHHHhcC--hhh
Confidence 99988876 899999999999999999999999999998 653
No 244
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.67 E-value=0.0017 Score=49.78 Aligned_cols=95 Identities=19% Similarity=0.092 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhh----HHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFT----KLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~----~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
+-..++..+...|++++|+..++.++..|.+.... ..+|.+...+|.+++|+..+...-. .. ..+...-..
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~----~~-w~~~~~elr 165 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE----ES-WAAIVAELR 165 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc----cc-HHHHHHHHh
Confidence 34567888899999999999999999666665544 3379999999999999996654432 11 122334456
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcC
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~ 152 (324)
|.++...|+-++|+..|++++...
T Consensus 166 GDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 166 GDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred hhHHHHcCchHHHHHHHHHHHHcc
Confidence 999999999999999999999987
No 245
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.61 E-value=0.0069 Score=52.64 Aligned_cols=152 Identities=13% Similarity=0.003 Sum_probs=99.9
Q ss_pred CCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc-CCCC----
Q psy8160 81 ASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE-DDLP---- 155 (324)
Q Consensus 81 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~---- 155 (324)
......+...+.+....|.++.|...+.++....+......+.+.+..+.+....|+..+|+..++..+.. ...+
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 34445566678999999999999999988877654433323467778899999999999999988888772 1001
Q ss_pred -------------------------CchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHH
Q psy8160 156 -------------------------VHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRC 210 (324)
Q Consensus 156 -------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~ 210 (324)
....+.++..+|....... .....+..++++..|..+++.+|....+|+.+|..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELY-SKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhc-cccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 0011334444444332210 00013577888888888888888888888888877
Q ss_pred HHHcCCH-----------------HHHHHHHHHHHccCCC
Q psy8160 211 FAAVGKV-----------------HDAFLAYRNSVEKSEG 233 (324)
Q Consensus 211 ~~~~~~~-----------------~~A~~~~~~al~~~p~ 233 (324)
+...-+. ..|+..|-+++...+.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 302 NDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 6654111 2377777777777766
No 246
>KOG0985|consensus
Probab=97.60 E-value=0.061 Score=51.51 Aligned_cols=74 Identities=8% Similarity=0.012 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-------------------HHH
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-------------------NKY 262 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-------------------~~~ 262 (324)
+-+-.+-..|...|-+++-+..++.++.+..-+...+..+|.+|.+-. +++-.+++ ..|
T Consensus 1280 deLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYskyk--p~km~EHl~LFwsRvNipKviRA~eqahlW 1357 (1666)
T KOG0985|consen 1280 DELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKYK--PEKMMEHLKLFWSRVNIPKVIRAAEQAHLW 1357 (1666)
T ss_pred HhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 445567778888999999999999999999989999999999887654 45554444 678
Q ss_pred HhhHHHHHHcCCCCc
Q psy8160 263 RDLGDFLVINNIPTS 277 (324)
Q Consensus 263 ~~lg~~~~~~~~~~~ 277 (324)
..+-.+|.+-..|+.
T Consensus 1358 ~ElvfLY~~y~eyDN 1372 (1666)
T KOG0985|consen 1358 SELVFLYDKYEEYDN 1372 (1666)
T ss_pred HHHHHHHHhhhhhhH
Confidence 888888888777777
No 247
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.59 E-value=0.019 Score=48.18 Aligned_cols=133 Identities=14% Similarity=0.024 Sum_probs=87.5
Q ss_pred hcccHHHHHHHHHHHHHhc----CCCcccHHHHHHHHHHHHHHhh-cHHHHHHHHHHHHhcCCC--------CC--chhh
Q psy8160 96 VNNEYDSALKHLTLCLIDA----SPCTFTKLEVRFHIAHLHEVQR-KYKTAKDSYEQLLKEDDL--------PV--HLKA 160 (324)
Q Consensus 96 ~~~~~~~A~~~~~~~l~~~----~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~~--------~~--~~~~ 160 (324)
.+|+++.|..++.++-... |.....-.+.+++.|......+ +++.|+..++++.+.-.. |+ ....
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 3455555555555553222 2222234568889999999999 999999999998876211 11 1225
Q ss_pred HHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q psy8160 161 DICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSE 232 (324)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 232 (324)
.++..++.++...+. ....++|...++.+-...|+.+..+...=.+....++.+.+.+.+.+.+..-+
T Consensus 85 ~iL~~La~~~l~~~~----~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 85 SILRLLANAYLEWDT----YESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHcCCC----hHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 677788888865332 23677788888888777888777664433444447888888888888887544
No 248
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.57 E-value=0.035 Score=46.89 Aligned_cols=183 Identities=19% Similarity=0.129 Sum_probs=130.2
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHH----hccHHHHHHHHHHHhcCCCCchhhHHHHHHHHh----cccHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKV----NNEYDSALKHLTLCLIDASPCTFTKLEGLMFKV----NNEYDS 102 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~----~~~~~~ 102 (324)
..|...+..+-... .....+.+|.+|.. ..+..+|..+|+.+. +.....+...+|.++.. ..+..+
T Consensus 58 ~~a~~~~~~a~~~~-----~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a-~~g~~~a~~~lg~~~~~G~gv~~d~~~ 131 (292)
T COG0790 58 AKALKSYEKAAELG-----DAAALALLGQMYGAGKGVSRDKTKAADWYRCAA-ADGLAEALFNLGLMYANGRGVPLDLVK 131 (292)
T ss_pred HHHHHHHHHhhhcC-----ChHHHHHHHHHHHhccCccccHHHHHHHHHHHh-hcccHHHHHhHHHHHhcCCCcccCHHH
Confidence 66777777665522 22578888888874 346888999999444 55555667778888876 459999
Q ss_pred HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhh-------cHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhh
Q psy8160 103 ALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQR-------KYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDT 175 (324)
Q Consensus 103 A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~-------~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~ 175 (324)
|..+|+++........ ..+.+.+|.+|..-. +...|...|.++-... . ..+...+|.+|..-
T Consensus 132 A~~~~~~Aa~~g~~~a---~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~----~~a~~~lg~~y~~G-- 200 (292)
T COG0790 132 ALKYYEKAAKLGNVEA---ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--N----PDAQLLLGRMYEKG-- 200 (292)
T ss_pred HHHHHHHHHHcCChhH---HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--C----HHHHHHHHHHHHcC--
Confidence 9999999987644321 234778888877642 3347888898887765 2 44889999888652
Q ss_pred hcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHccCCCC
Q psy8160 176 LGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVG---------------KVHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 176 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~---------------~~~~A~~~~~~al~~~p~~ 234 (324)
.| ...+.++|..+|.++.+... ....+.++ ++...| +...|..++..+....+..
T Consensus 201 ~G-v~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 201 LG-VPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred CC-CCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
Confidence 22 13489999999999998876 88888899 666665 6666777776666555443
No 249
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.022 Score=46.85 Aligned_cols=145 Identities=14% Similarity=0.146 Sum_probs=103.4
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHH-H
Q psy8160 88 KLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQ-L 166 (324)
Q Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~-l 166 (324)
...+.-....|++.+|...+..++...|... ++...++.|+...|+.+.|...+... |.......+.. .
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~----~~~~~la~~~l~~g~~e~A~~iL~~l------P~~~~~~~~~~l~ 207 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPENS----EAKLLLAECLLAAGDVEAAQAILAAL------PLQAQDKAAHGLQ 207 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCcccc----hHHHHHHHHHHHcCChHHHHHHHHhC------cccchhhHHHHHH
Confidence 3345566778999999999999999888876 88999999999999999988887654 33222222222 1
Q ss_pred HHH--HHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC--CHHHHHHhH
Q psy8160 167 GWM--YHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG--NADTWCSIG 242 (324)
Q Consensus 167 ~~~--~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg 242 (324)
+++ +.+....+ -+.-+++.+..+|++.++-+.+|..+...|+.+.|++.+-..+..+.. +..+...+-
T Consensus 208 a~i~ll~qaa~~~--------~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ll 279 (304)
T COG3118 208 AQIELLEQAAATP--------EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLL 279 (304)
T ss_pred HHHHHHHHHhcCC--------CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHH
Confidence 211 21111111 123466677889999999999999999999999999999888877653 455666666
Q ss_pred HHHhhcCC
Q psy8160 243 NKDFSNNS 250 (324)
Q Consensus 243 ~~~~~~~~ 250 (324)
.++...|.
T Consensus 280 e~f~~~g~ 287 (304)
T COG3118 280 ELFEAFGP 287 (304)
T ss_pred HHHHhcCC
Confidence 66666664
No 250
>KOG1550|consensus
Probab=97.55 E-value=0.0029 Score=58.33 Aligned_cols=142 Identities=18% Similarity=0.109 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhh-----CCccHHHHHHHHHHHH
Q psy8160 138 YKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA-----DPKSGQSLYLLGRCFA 212 (324)
Q Consensus 138 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~lg~~~~ 212 (324)
...|...++.+.... + ..+...+|.++..- ..| ...+.+.|+.+|+.+... ....+.+.+.+|.+|.
T Consensus 228 ~~~a~~~~~~~a~~g----~--~~a~~~~g~~y~~G-~~g-~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~ 299 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG----H--SEAQYALGICYLAG-TYG-VTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYL 299 (552)
T ss_pred hhHHHHHHHHHHhhc----c--hHHHHHHHHHHhhc-ccc-ccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHh
Confidence 567888888887655 2 44888899998662 122 245899999999999771 1125567889999999
Q ss_pred HcC-----CHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcC--CCHHHHHHHH---------HHHHhhHHHHHHcC---
Q psy8160 213 AVG-----KVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNN--SNREDYHQAL---------NKYRDLGDFLVINN--- 273 (324)
Q Consensus 213 ~~~-----~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~--~~~~~A~~~~---------~~~~~lg~~~~~~~--- 273 (324)
... +...|+.+|.++-... ++++.+.+|.++.... +++..|.++| .+.+.++.+|....
T Consensus 300 ~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 300 QGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVE 377 (552)
T ss_pred cCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcC
Confidence 853 6788999999997655 6888899999998776 2278999999 88899999987663
Q ss_pred -CCCcchHHHHHHHhhhcC
Q psy8160 274 -IPTSNNNRQCYNSYSTSI 291 (324)
Q Consensus 274 -~~~~~~A~~~~~~al~~~ 291 (324)
+... |..+|.++.+..
T Consensus 378 r~~~~--A~~~~k~aA~~g 394 (552)
T KOG1550|consen 378 RNLEL--AFAYYKKAAEKG 394 (552)
T ss_pred CCHHH--HHHHHHHHHHcc
Confidence 5566 999999999887
No 251
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.51 E-value=0.0023 Score=51.11 Aligned_cols=101 Identities=19% Similarity=0.299 Sum_probs=70.9
Q ss_pred HhhcHHHHHHHHHHHHhc---CCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc------cHHHH
Q psy8160 134 VQRKYKTAKDSYEQLLKE---DDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK------SGQSL 204 (324)
Q Consensus 134 ~~~~~~~A~~~~~~al~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~------~~~~~ 204 (324)
....+++|++.|.-|+-. ...+....+.++..+||+|...........-...|...|.++++.... .....
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~ 168 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL 168 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence 344677788777776632 111333458899999999976432221233467888888888865432 23678
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q psy8160 205 YLLGRCFAAVGKVHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 205 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 234 (324)
+.+|.+....|++++|..+|.+++.....+
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 899999999999999999999999765443
No 252
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.44 E-value=0.00023 Score=38.01 Aligned_cols=33 Identities=21% Similarity=0.551 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 234 (324)
++++.+|.++...|++++|+..|++++...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 478999999999999999999999999999974
No 253
>KOG0530|consensus
Probab=97.44 E-value=0.0071 Score=48.67 Aligned_cols=146 Identities=8% Similarity=0.103 Sum_probs=95.5
Q ss_pred hccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHh-hcHHHH
Q psy8160 64 NNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQ-RKYKTA 141 (324)
Q Consensus 64 ~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~-~~~~~A 141 (324)
..+|.++..+|+.++ .+.. -..|+...+.++..+|.+- .+|...-.++..+ .+..+-
T Consensus 39 te~fr~~m~YfRAI~~~~E~-----------------S~RAl~LT~d~i~lNpAnY----TVW~yRr~iL~~l~~dL~~E 97 (318)
T KOG0530|consen 39 TEDFRDVMDYFRAIIAKNEK-----------------SPRALQLTEDAIRLNPANY----TVWQYRRVILRHLMSDLNKE 97 (318)
T ss_pred chhHHHHHHHHHHHHhcccc-----------------CHHHHHHHHHHHHhCcccc----hHHHHHHHHHHHhHHHHHHH
Confidence 356777777777555 3333 3345555556676777665 4444444444333 356666
Q ss_pred HHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHH-HHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHH
Q psy8160 142 KDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRET-LAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDA 220 (324)
Q Consensus 142 ~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A 220 (324)
++++..++..+ |.+.+ +|...-.+.-. .| ++. .-+++.+.++..+.++..+|...-.+...-+.++.=
T Consensus 98 l~~l~eI~e~n--pKNYQ--vWHHRr~ive~---l~----d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~E 166 (318)
T KOG0530|consen 98 LEYLDEIIEDN--PKNYQ--VWHHRRVIVEL---LG----DPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDE 166 (318)
T ss_pred HHHHHHHHHhC--ccchh--HHHHHHHHHHH---hc----CcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHH
Confidence 77777877777 77755 77666665533 22 444 567777888888888888888888887777778888
Q ss_pred HHHHHHHHccCCCCHHHHHHh
Q psy8160 221 FLAYRNSVEKSEGNADTWCSI 241 (324)
Q Consensus 221 ~~~~~~al~~~p~~~~~~~~l 241 (324)
+.+..+.++.+-.+-.+|...
T Consensus 167 L~y~~~Lle~Di~NNSAWN~R 187 (318)
T KOG0530|consen 167 LAYADELLEEDIRNNSAWNQR 187 (318)
T ss_pred HHHHHHHHHHhhhccchhhee
Confidence 888888887777666666543
No 254
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.41 E-value=0.0021 Score=48.20 Aligned_cols=57 Identities=9% Similarity=0.126 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.+...++..+...|++++|+..+++++..+|.+..+|..+-.+|...|+ ...|+..|
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~-~~~A~~~Y 119 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGR-RAEALRVY 119 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT--HHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcC-HHHHHHHH
Confidence 4556678888999999999999999999999999999999999999999 99999887
No 255
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.39 E-value=0.01 Score=44.35 Aligned_cols=50 Identities=26% Similarity=0.352 Sum_probs=44.1
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVE 229 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 229 (324)
.+++++|+..+++++..+|.+..+|..+-.++...|+...|+..|++...
T Consensus 75 ~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 75 AGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp TT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 55999999999999999999999999999999999999999999988854
No 256
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.39 E-value=0.071 Score=45.65 Aligned_cols=249 Identities=9% Similarity=-0.016 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHH--HhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMF--KVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH 130 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~--~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~ 130 (324)
+|.--+..-...|+++.|.+-|+..+.||..-.. .+.|... ...|+.+.|..+-+++-...|.-. -+....-.
T Consensus 122 IhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRll-GLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~----WA~~AtLe 196 (531)
T COG3898 122 IHLLEAQAALLEGDYEDARKKFEAMLDDPETRLL-GLRGLYLEAQRLGAREAARHYAERAAEKAPQLP----WAARATLE 196 (531)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHH-hHHHHHHHHHhcccHHHHHHHHHHHHhhccCCc----hHHHHHHH
Confidence 5566667777889999999999977777754322 2233333 345899999999999987777655 23333334
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHH--hhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 131 LHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYH--CIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 131 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
.....|+++.|+...+..........+ .+-...+-++. .++.. ..+...|...-.++.++.|+...+-.--+
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~~vie~~---~aeR~rAvLLtAkA~s~l---dadp~~Ar~~A~~a~KL~pdlvPaav~AA 270 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAAKVIEKD---VAERSRAVLLTAKAMSLL---DADPASARDDALEANKLAPDLVPAAVVAA 270 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhhchh---hHHHHHHHHHHHHHHHHh---cCChHHHHHHHHHHhhcCCccchHHHHHH
Confidence 456789999999998776543311211 12222222221 11111 12678899999999999999988888889
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHH-------HHHH-----HHHHhhHHHHHHcCCCC
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDY-------HQAL-----NKYRDLGDFLVINNIPT 276 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A-------~~~~-----~~~~~lg~~~~~~~~~~ 276 (324)
..++..|+..++-..++.+.+.+| +|+.|... ++.+.|+ .... +..+ +..+..+..-...|++.
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~eP-HP~ia~lY--~~ar~gd-ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~ 346 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKAEP-HPDIALLY--VRARSGD-TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS 346 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhcCC-ChHHHHHH--HHhcCCC-cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence 999999999999999999999988 56654332 2334444 2111 1111 55556666666677777
Q ss_pred cchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHH
Q psy8160 277 SNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKY 319 (324)
Q Consensus 277 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~ 319 (324)
. |..--+.+....|.... .--+..+..-+.||-.++..+.
T Consensus 347 ~--ARa~Aeaa~r~~pres~-~lLlAdIeeAetGDqg~vR~wl 386 (531)
T COG3898 347 A--ARAKAEAAAREAPRESA-YLLLADIEEAETGDQGKVRQWL 386 (531)
T ss_pred H--HHHHHHHHhhhCchhhH-HHHHHHHHhhccCchHHHHHHH
Confidence 7 77777777777775432 2223333334445555554443
No 257
>KOG3616|consensus
Probab=97.36 E-value=0.057 Score=49.98 Aligned_cols=59 Identities=17% Similarity=0.261 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHH------h-c----CCCCc-hhhHHHHHHHHhcccHHHHHHHHHHH
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHLTLC------L-I----DASPC-TFTKLEGLMFKVNNEYDSALKHLTLC 110 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~~~a------l-~----~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~ 110 (324)
+.|-.-|.+|-+..++++|+++|++- + + -|... ..-...|.-+...|+++.|+.+|-.+
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea 732 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA 732 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh
Confidence 45666777888888888888888752 1 1 11111 11111366667777777777777654
No 258
>KOG0530|consensus
Probab=97.36 E-value=0.0074 Score=48.57 Aligned_cols=172 Identities=10% Similarity=0.114 Sum_probs=121.2
Q ss_pred HhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhc-ccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHH-
Q psy8160 63 VNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVN-NEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYK- 139 (324)
Q Consensus 63 ~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~-~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~- 139 (324)
....-..|+.....+| .+|.+...+...-.++... .+..+-++++..++..+|.+- .+|...-.+....|++.
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNY----QvWHHRr~ive~l~d~s~ 130 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNY----QVWHHRRVIVELLGDPSF 130 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccch----hHHHHHHHHHHHhcCccc
Confidence 3344567888888888 8888888776665555544 457777888888888888776 67777777777778777
Q ss_pred HHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHc-C---
Q psy8160 140 TAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAV-G--- 215 (324)
Q Consensus 140 ~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~-~--- 215 (324)
.-++..+.++..+ ..+.+ +|...-|+... .+.++.-+.+..+.++.+-.+..+|...=.+.... |
T Consensus 131 rELef~~~~l~~D--aKNYH--aWshRqW~~r~-------F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~ 199 (318)
T KOG0530|consen 131 RELEFTKLMLDDD--AKNYH--AWSHRQWVLRF-------FKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVIS 199 (318)
T ss_pred chHHHHHHHHhcc--ccchh--hhHHHHHHHHH-------HhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCcc
Confidence 6677788888877 66666 88888888866 33788888888888888877777776532222111 1
Q ss_pred --CHHHHHHHHHHHHccCCCCHHHHHHhHHHHhh-cC
Q psy8160 216 --KVHDAFLAYRNSVEKSEGNADTWCSIGNKDFS-NN 249 (324)
Q Consensus 216 --~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~ 249 (324)
..+.=+.+..+.+...|++..+|..|.-++.. .|
T Consensus 200 ~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~g 236 (318)
T KOG0530|consen 200 KAELERELNYTKDKILLVPNNESAWNYLKGLLELDSG 236 (318)
T ss_pred HHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccC
Confidence 12334566677788888888888888777765 44
No 259
>KOG2300|consensus
Probab=97.34 E-value=0.04 Score=48.40 Aligned_cols=187 Identities=14% Similarity=0.113 Sum_probs=122.7
Q ss_pred HHHHHHHHhccHHHHHHHHHHHh-c---CCCC-------chhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHH
Q psy8160 56 RLGLMFKVNNEYDSALKHLTLCL-I---DASP-------CTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEV 124 (324)
Q Consensus 56 ~lg~~~~~~~~~~~A~~~~~~al-~---~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~ 124 (324)
.+..|-.-.|++.+|++-...+. . .|.. +....++|......+.++.|+.+|..+.+....... .+.+
T Consensus 328 ~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl-~a~~ 406 (629)
T KOG2300|consen 328 HIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDL-QAFC 406 (629)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHH-HHHH
Confidence 34566677899999999887766 2 3442 334556788888889999999999999876544332 3456
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCc---hhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc-
Q psy8160 125 RFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVH---LKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS- 200 (324)
Q Consensus 125 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~- 200 (324)
..++|..|...++-+.--+..+.+-..+..+-+ .++.+++..|...+. .+++.+|..++.+.++.....
T Consensus 407 nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~-------qn~lnEaK~~l~e~Lkmanaed 479 (629)
T KOG2300|consen 407 NLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFK-------QNDLNEAKRFLRETLKMANAED 479 (629)
T ss_pred HHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHH-------hccHHHHHHHHHHHHhhcchhh
Confidence 677899999988765443333332222211111 113344444544444 558999999999998765211
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC---CHH-HHH--HhHHHHhhcCC
Q psy8160 201 -----GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG---NAD-TWC--SIGNKDFSNNS 250 (324)
Q Consensus 201 -----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~-~~~--~lg~~~~~~~~ 250 (324)
+-.+..||.+....|+..++....+-+++.... .+. .|. .+-.++...|.
T Consensus 480 ~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~ 540 (629)
T KOG2300|consen 480 LNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGE 540 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCc
Confidence 235677899999999999999998888876544 332 232 34566777665
No 260
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.32 E-value=0.0068 Score=48.40 Aligned_cols=99 Identities=14% Similarity=0.224 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhccC----CCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVD----PSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKH 106 (324)
Q Consensus 31 ~~A~~~~~~~l~~~----p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~ 106 (324)
++|++.|..++-.. +....-+.++..+|.+|...|+-+.....++ .|++.
T Consensus 94 ~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~--------------------------~Al~~ 147 (214)
T PF09986_consen 94 EEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLR--------------------------KALEF 147 (214)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHH--------------------------HHHHH
Confidence 67777777766432 1222345577888888888888666666666 56677
Q ss_pred HHHHHHhcCC--CcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q psy8160 107 LTLCLIDASP--CTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLP 155 (324)
Q Consensus 107 ~~~~l~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 155 (324)
|++++..... .......+.+.+|.++...|++++|+..|.+++.....+
T Consensus 148 y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 148 YEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 7777765333 344556788899999999999999999999999876333
No 261
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.31 E-value=0.15 Score=48.22 Aligned_cols=258 Identities=12% Similarity=0.017 Sum_probs=149.7
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhh-HHHHHHHHhcccHHHHHHHHHHHHHhcCCCcc-cHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFT-KLEGLMFKVNNEYDSALKHLTLCLIDASPCTF-TKLEVRFH 127 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~~~~ 127 (324)
..+.|..-+..+...|...+|+++--.| .||...... ...+.-....++..- ....+..-|.... ..+.....
T Consensus 346 ~~~lH~~Aa~w~~~~g~~~eAI~hAlaA-~d~~~aa~lle~~~~~L~~~~~lsl----l~~~~~~lP~~~l~~~P~Lvll 420 (894)
T COG2909 346 LKELHRAAAEWFAEHGLPSEAIDHALAA-GDPEMAADLLEQLEWQLFNGSELSL----LLAWLKALPAELLASTPRLVLL 420 (894)
T ss_pred hhHHHHHHHHHHHhCCChHHHHHHHHhC-CCHHHHHHHHHhhhhhhhcccchHH----HHHHHHhCCHHHHhhCchHHHH
Confidence 4567888888888999999998876533 222211100 001111122222221 1222333333322 22345566
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh-----hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH-
Q psy8160 128 IAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK-----ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG- 201 (324)
Q Consensus 128 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~- 201 (324)
.++......++.+|..+..++-..-+.|+... ++..--.|.+... .++.+.|++..+.++..-|.+.
T Consensus 421 ~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~-------~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 421 QAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALN-------RGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHh-------cCCHHHHHHHHHHHHHhcccccc
Confidence 68888889999999998888765443232211 2222222222222 4589999999999998877654
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHccC----CCCHHHHH--HhHHHHhhcCCCHHHH--HHHH----------
Q psy8160 202 ----QSLYLLGRCFAAVGKVHDAFLAYRNSVEKS----EGNADTWC--SIGNKDFSNNSNREDY--HQAL---------- 259 (324)
Q Consensus 202 ----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~--~lg~~~~~~~~~~~~A--~~~~---------- 259 (324)
.++..+|.+..-.|++++|..+...+.++. .-+-..|. ..+.++...|+ ...| ...|
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq-~~~a~~~~~~~~~~~q~l~q 572 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQ-VARAEQEKAFNLIREQHLEQ 572 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHhhh
Confidence 567788999999999999999999988773 33334443 34666777774 3333 3333
Q ss_pred ----------------------------------------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCC
Q psy8160 260 ----------------------------------------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIAS 293 (324)
Q Consensus 260 ----------------------------------------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (324)
-+...|+.++...|++++ |.........+--+
T Consensus 573 ~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~--A~~~l~~~~~l~~~ 650 (894)
T COG2909 573 KPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDK--ALAQLDELERLLLN 650 (894)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHH--HHHHHHHHHHHhcC
Confidence 223467778888888888 88777766554322
Q ss_pred h-hhh--hhchhhh---ccCChhhHHHHHHHHhhc
Q psy8160 294 C-KHI--NNNKDFS---NNSNREDYHQALNKYRDL 322 (324)
Q Consensus 294 ~-~~~--~~~l~~~---~~~~~~~~~~a~~~~~~~ 322 (324)
. +++ ..+...+ .-..+|+...+-.+..+.
T Consensus 651 ~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 651 GQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred CCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 2 222 1111111 115567777776665543
No 262
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.26 E-value=0.00046 Score=37.81 Aligned_cols=28 Identities=25% Similarity=0.391 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q psy8160 203 SLYLLGRCFAAVGKVHDAFLAYRNSVEK 230 (324)
Q Consensus 203 ~~~~lg~~~~~~~~~~~A~~~~~~al~~ 230 (324)
+|..||.+|...|++++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4788999999999999999999996644
No 263
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.25 E-value=0.028 Score=48.19 Aligned_cols=142 Identities=13% Similarity=0.099 Sum_probs=101.4
Q ss_pred HHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhh-----cccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHH
Q psy8160 144 SYEQLLKEDDLPVHLKADICRQLGWMYHCIDTL-----GEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVH 218 (324)
Q Consensus 144 ~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~ 218 (324)
-|++.+..+ |.++. +|..+...--..... .....-.+.-+..|++|++.+|.+...+..+=.+.....+.+
T Consensus 7 el~~~v~~~--P~di~--~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~ 82 (321)
T PF08424_consen 7 ELNRRVREN--PHDIE--AWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSE 82 (321)
T ss_pred HHHHHHHhC--cccHH--HHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH
Confidence 355666666 77644 666665444322111 111224567789999999999999998888878888888999
Q ss_pred HHHHHHHHHHccCCCCHHHHHHhHHHHhh---cCCCHHHHHHHH-----------------------------HHHHhhH
Q psy8160 219 DAFLAYRNSVEKSEGNADTWCSIGNKDFS---NNSNREDYHQAL-----------------------------NKYRDLG 266 (324)
Q Consensus 219 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~---~~~~~~~A~~~~-----------------------------~~~~~lg 266 (324)
+...-+++++..+|+++..|...-..... .-. +.+....| .++..+.
T Consensus 83 ~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~-v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~ 161 (321)
T PF08424_consen 83 KLAKKWEELLFKNPGSPELWREYLDFRQSNFASFT-VSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLC 161 (321)
T ss_pred HHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHH
Confidence 99999999999999999999765443332 112 33333333 5667788
Q ss_pred HHHHHcCCCCcchHHHHHHHhhhcCC
Q psy8160 267 DFLVINNIPTSNNNRQCYNSYSTSIA 292 (324)
Q Consensus 267 ~~~~~~~~~~~~~A~~~~~~al~~~p 292 (324)
....+.|..+. |+..++..++++=
T Consensus 162 ~fl~~aG~~E~--Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 162 RFLRQAGYTER--AVALWQALLEFNF 185 (321)
T ss_pred HHHHHCCchHH--HHHHHHHHHHHHc
Confidence 88899999999 9999999999753
No 264
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.21 E-value=0.00091 Score=35.62 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCC
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPV 156 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 156 (324)
++++.+|.++...|++++|+..|++++... |+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~--P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRY--PD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHS--TT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHC--cC
Confidence 367888999999999999999999988887 65
No 265
>KOG2041|consensus
Probab=97.16 E-value=0.19 Score=46.44 Aligned_cols=27 Identities=15% Similarity=0.101 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLC 77 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~a 77 (324)
++.|.-++......-+++.|...|-+.
T Consensus 692 prLWrllAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 692 PRLWRLLAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred hHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 446677777666666666666666543
No 266
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.16 E-value=0.00031 Score=38.49 Aligned_cols=29 Identities=10% Similarity=0.054 Sum_probs=23.9
Q ss_pred HHHhhHHHHHHcCCCCcchHHHHHHHhhhcC
Q psy8160 261 KYRDLGDFLVINNIPTSNNNRQCYNSYSTSI 291 (324)
Q Consensus 261 ~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~ 291 (324)
+|.+||.+|...|++++ |+++|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~--Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEK--AIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHH--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHH--HHHHHHHHHHhc
Confidence 47889999999999999 999999966443
No 267
>KOG1914|consensus
Probab=97.10 E-value=0.19 Score=44.93 Aligned_cols=206 Identities=8% Similarity=0.012 Sum_probs=127.9
Q ss_pred HHHHHHHHhccCCCcccchHHHHHHHHHHHHhcc--------------HHHHHHHHHHHh--cCCCCchhhHHHHHHHHh
Q psy8160 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNE--------------YDSALKHLTLCL--IDASPCTFTKLEGLMFKV 96 (324)
Q Consensus 33 A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~--------------~~~A~~~~~~al--~~~~~~~~~~~la~~~~~ 96 (324)
-.-+|++++..-+- .+++|+.-+..+...++ -+++.+++++++ ....+...+..++..-..
T Consensus 264 v~yayeQ~ll~l~~---~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~ 340 (656)
T KOG1914|consen 264 VMYAYEQCLLYLGY---HPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEES 340 (656)
T ss_pred HHHHHHHHHHHHhc---CHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 34456666655543 34566665555555444 567888888887 444544445545444443
Q ss_pred ccc---HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhh
Q psy8160 97 NNE---YDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCI 173 (324)
Q Consensus 97 ~~~---~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~ 173 (324)
.-+ ++..-.++++++........ -++.++-..-.+..-.+.|...|.++-+....+.+ ++..-|.+-+.
T Consensus 341 ~~~~n~~~~~~~~~~~ll~~~~~~~t---Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hh----VfVa~A~mEy~- 412 (656)
T KOG1914|consen 341 RYDDNKEKKVHEIYNKLLKIEDIDLT---LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHH----VFVAAALMEYY- 412 (656)
T ss_pred hcccchhhhhHHHHHHHHhhhccCCc---eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcch----hhHHHHHHHHH-
Confidence 333 66677777777654332221 23444444445555577888888888766543422 33333333322
Q ss_pred hhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--CCC-CHHHHHHhHHHHhhcCC
Q psy8160 174 DTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK--SEG-NADTWCSIGNKDFSNNS 250 (324)
Q Consensus 174 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~-~~~~~~~lg~~~~~~~~ 250 (324)
. .++.+-|...|+-.+...++++..-.....-+...++-..|...|++++.. .|+ ..+.|-.+-..-...|+
T Consensus 413 -c----skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGd 487 (656)
T KOG1914|consen 413 -C----SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGD 487 (656)
T ss_pred -h----cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhccc
Confidence 1 348888999999999999999987777777788889989999999999886 333 24566665555555555
Q ss_pred CHHHH
Q psy8160 251 NREDY 255 (324)
Q Consensus 251 ~~~~A 255 (324)
...+
T Consensus 488 -L~si 491 (656)
T KOG1914|consen 488 -LNSI 491 (656)
T ss_pred -HHHH
Confidence 4443
No 268
>KOG1308|consensus
Probab=97.08 E-value=0.00024 Score=58.98 Aligned_cols=91 Identities=14% Similarity=0.125 Sum_probs=65.8
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHH
Q psy8160 131 LHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRC 210 (324)
Q Consensus 131 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~ 210 (324)
-....|.+++|++.|..++.++ |.. +..+-..+.++.. .+....|+..+..+++++|+....+-..|..
T Consensus 123 eAln~G~~~~ai~~~t~ai~ln--p~~--a~l~~kr~sv~lk-------l~kp~~airD~d~A~ein~Dsa~~ykfrg~A 191 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELN--PPL--AILYAKRASVFLK-------LKKPNAAIRDCDFAIEINPDSAKGYKFRGYA 191 (377)
T ss_pred HHhcCcchhhhhcccccccccC--Cch--hhhcccccceeee-------ccCCchhhhhhhhhhccCcccccccchhhHH
Confidence 3445677778888888887777 665 4466666666655 3367777778888888887777777777777
Q ss_pred HHHcCCHHHHHHHHHHHHccCC
Q psy8160 211 FAAVGKVHDAFLAYRNSVEKSE 232 (324)
Q Consensus 211 ~~~~~~~~~A~~~~~~al~~~p 232 (324)
...+|++.+|...++.+.+++-
T Consensus 192 ~rllg~~e~aa~dl~~a~kld~ 213 (377)
T KOG1308|consen 192 ERLLGNWEEAAHDLALACKLDY 213 (377)
T ss_pred HHHhhchHHHHHHHHHHHhccc
Confidence 7777888888888877777654
No 269
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.03 E-value=0.0013 Score=34.35 Aligned_cols=33 Identities=27% Similarity=0.550 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 234 (324)
.+++.+|.++...+++++|+.+++++++.+|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 568899999999999999999999999998863
No 270
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.99 E-value=0.098 Score=39.63 Aligned_cols=143 Identities=10% Similarity=0.041 Sum_probs=97.7
Q ss_pred HHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhh
Q psy8160 94 FKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCI 173 (324)
Q Consensus 94 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~ 173 (324)
+...++.++|+..|..+-+..-.. ...-+.++.|.+....|+...|+..|..+-...+.|.-..-.+-..-++++.-
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~--YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD- 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGS--YPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVD- 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCc--chHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhc-
Confidence 344577888888887665443333 23456778899999999999999999998877755543322233333444422
Q ss_pred hhhcccchhHHHHHHHHHHHh-hhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHh
Q psy8160 174 DTLGEKSHRETLAIHCLQKSI-EADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDF 246 (324)
Q Consensus 174 ~~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 246 (324)
.+.|++-....+..- ..+|....+.-.||..-++.|++.+|.++|..... +...|....+.+.+.+
T Consensus 145 ------~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~ml 211 (221)
T COG4649 145 ------NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIML 211 (221)
T ss_pred ------cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHH
Confidence 446666655555432 34455567788899999999999999999998866 6666766666665544
No 271
>KOG0985|consensus
Probab=96.97 E-value=0.21 Score=48.10 Aligned_cols=141 Identities=13% Similarity=0.031 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHH
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQ 202 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 202 (324)
.+|.++|......|...+|++.|-++ .+ |. .+...-.+..+ .+.|++-+.++.-+-+.-. .+.
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika--dD--ps-----~y~eVi~~a~~-------~~~~edLv~yL~MaRkk~~-E~~ 1167 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA--DD--PS-----NYLEVIDVASR-------TGKYEDLVKYLLMARKKVR-EPY 1167 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc--CC--cH-----HHHHHHHHHHh-------cCcHHHHHHHHHHHHHhhc-Ccc
Confidence 57777777777777777777777554 12 32 23333333322 3467777777776654321 222
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH---HHHHhhHHHHHHcCCCCcch
Q psy8160 203 SLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL---NKYRDLGDFLVINNIPTSNN 279 (324)
Q Consensus 203 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~---~~~~~lg~~~~~~~~~~~~~ 279 (324)
+-..|-..|.+.++..+-.... ..|+++.. -..|+-++..+. |+.|.-.| .-|..|+..+...|+|+.
T Consensus 1168 id~eLi~AyAkt~rl~elE~fi-----~gpN~A~i-~~vGdrcf~~~~-y~aAkl~y~~vSN~a~La~TLV~LgeyQ~-- 1238 (1666)
T KOG0985|consen 1168 IDSELIFAYAKTNRLTELEEFI-----AGPNVANI-QQVGDRCFEEKM-YEAAKLLYSNVSNFAKLASTLVYLGEYQG-- 1238 (1666)
T ss_pred chHHHHHHHHHhchHHHHHHHh-----cCCCchhH-HHHhHHHhhhhh-hHHHHHHHHHhhhHHHHHHHHHHHHHHHH--
Confidence 2223334455555555433322 45655443 567888888899 99998888 678889999999999999
Q ss_pred HHHHHHHhhh
Q psy8160 280 NRQCYNSYST 289 (324)
Q Consensus 280 A~~~~~~al~ 289 (324)
|++.-++|-.
T Consensus 1239 AVD~aRKAns 1248 (1666)
T KOG0985|consen 1239 AVDAARKANS 1248 (1666)
T ss_pred HHHHhhhccc
Confidence 9999888753
No 272
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.97 E-value=0.2 Score=42.99 Aligned_cols=247 Identities=11% Similarity=-0.007 Sum_probs=161.8
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHh-cCCCC--chhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Q psy8160 55 LRLGLMFKVNNEYDSALKHLTLCL-IDASP--CTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHL 131 (324)
Q Consensus 55 ~~lg~~~~~~~~~~~A~~~~~~al-~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~ 131 (324)
..-|.+..--||-..|.+.-.++- +-.++ .-.+.+-++.-...|+++.|.+-|+-.+.. |.... --+..|-..
T Consensus 88 LStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRl---lGLRgLyle 163 (531)
T COG3898 88 LSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRL---LGLRGLYLE 163 (531)
T ss_pred HhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHH---HhHHHHHHH
Confidence 344667777788888888887765 32222 233444577888889999999999977743 33210 112222222
Q ss_pred HHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC---CccH---HHHH
Q psy8160 132 HEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD---PKSG---QSLY 205 (324)
Q Consensus 132 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---~~~~---~~~~ 205 (324)
-...|+.+.|+.+-+.+.... |.- .|-..+.+-.. .. .|+++.|++..+...+.. ++.. .+-.
T Consensus 164 Aqr~GareaAr~yAe~Aa~~A--p~l----~WA~~AtLe~r-~~----~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvL 232 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKA--PQL----PWAARATLEAR-CA----AGDWDGALKLVDAQRAAKVIEKDVAERSRAVL 232 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhc--cCC----chHHHHHHHHH-Hh----cCChHHHHHHHHHHHHHHhhchhhHHHHHHHH
Confidence 346699999999999998887 654 22223322211 11 459999999998875432 2222 2222
Q ss_pred HHHHHH-HHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-HHH-----HhhHHHHHHcCCCCcc
Q psy8160 206 LLGRCF-AAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-NKY-----RDLGDFLVINNIPTSN 278 (324)
Q Consensus 206 ~lg~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-~~~-----~~lg~~~~~~~~~~~~ 278 (324)
.-+... .-.-+...|...-.+++++.|+....-..-+..++..|+ ..++-..+ .+| -.++.+|....--+.
T Consensus 233 LtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~-~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdt- 310 (531)
T COG3898 233 LTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGN-LRKGSKILETAWKAEPHPDIALLYVRARSGDT- 310 (531)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccc-hhhhhhHHHHHHhcCCChHHHHHHHHhcCCCc-
Confidence 222221 223468889999999999999999999999999999999 99998888 333 568888888877778
Q ss_pred hHHHHHHHhh---hcCCChhhhhhchhhhccCChhhHHHHHHHHh
Q psy8160 279 NNRQCYNSYS---TSIASCKHINNNKDFSNNSNREDYHQALNKYR 320 (324)
Q Consensus 279 ~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 320 (324)
+++-.+++- .+.|+|........... ...++|-.|..+..
T Consensus 311 -a~dRlkRa~~L~slk~nnaes~~~va~aA-lda~e~~~ARa~Ae 353 (531)
T COG3898 311 -ALDRLKRAKKLESLKPNNAESSLAVAEAA-LDAGEFSAARAKAE 353 (531)
T ss_pred -HHHHHHHHHHHHhcCccchHHHHHHHHHH-HhccchHHHHHHHH
Confidence 887777665 45677665444333332 34566766665543
No 273
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.14 Score=42.28 Aligned_cols=147 Identities=18% Similarity=0.112 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHH-
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIA- 129 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la- 129 (324)
+.-+.-+.-....|++..|...|..++ .+|.+..+...++.+|...|+.+.|...+.. .|.....+ ......+
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~----lP~~~~~~-~~~~l~a~ 209 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA----LPLQAQDK-AAHGLQAQ 209 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh----Ccccchhh-HHHHHHHH
Confidence 345666777888999999999999999 9999999999999999999999999885543 33332111 1111111
Q ss_pred -HHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc--cHHHHHH
Q psy8160 130 -HLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK--SGQSLYL 206 (324)
Q Consensus 130 -~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~ 206 (324)
..+.......+. ..+++.+..+ |++.. +-+.++..+.. .|+.+.|++.+-..+..+.. +..+.-.
T Consensus 210 i~ll~qaa~~~~~-~~l~~~~aad--Pdd~~--aa~~lA~~~~~-------~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ 277 (304)
T COG3118 210 IELLEQAAATPEI-QDLQRRLAAD--PDDVE--AALALADQLHL-------VGRNEAALEHLLALLRRDRGFEDGEARKT 277 (304)
T ss_pred HHHHHHHhcCCCH-HHHHHHHHhC--CCCHH--HHHHHHHHHHH-------cCCHHHHHHHHHHHHHhcccccCcHHHHH
Confidence 222233322222 2345556667 88744 77888888865 44899999988888876543 3344444
Q ss_pred HHHHHHHcC
Q psy8160 207 LGRCFAAVG 215 (324)
Q Consensus 207 lg~~~~~~~ 215 (324)
+=.++...|
T Consensus 278 lle~f~~~g 286 (304)
T COG3118 278 LLELFEAFG 286 (304)
T ss_pred HHHHHHhcC
Confidence 444444444
No 274
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.89 E-value=0.016 Score=39.28 Aligned_cols=65 Identities=15% Similarity=0.151 Sum_probs=52.4
Q ss_pred HHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC--HHHHHHhHHHHhhcCC
Q psy8160 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN--ADTWCSIGNKDFSNNS 250 (324)
Q Consensus 186 A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~~~ 250 (324)
.+..+++.+..+|.+.++.+.+|..+...|++++|++.+-.++..+++. ..+...+-.++...|.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4667888999999999999999999999999999999999999998876 5566666666666666
No 275
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.89 E-value=0.0053 Score=36.72 Aligned_cols=42 Identities=17% Similarity=0.069 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHH
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 243 (324)
+.+|.+|..+..+|+|++|..+.+.+++++|++..+......
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 467889999999999999999999999999999887654433
No 276
>KOG1308|consensus
Probab=96.89 E-value=0.0005 Score=57.12 Aligned_cols=79 Identities=16% Similarity=0.104 Sum_probs=74.7
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.|.++.|++.+..+++++|.....+...+.++..++++..|+..|..++.++|+...-+...|.....+|+ |++|.+.+
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~-~e~aa~dl 205 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN-WEEAAHDL 205 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhc-hHHHHHHH
Confidence 44899999999999999999999999999999999999999999999999999999999999999999999 99998876
No 277
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.86 E-value=0.26 Score=42.68 Aligned_cols=176 Identities=10% Similarity=0.019 Sum_probs=111.2
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-c----CCCCchhhHHHHHHHHh---cccHHHHHHHHHHHHHhcCCCcccH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-I----DASPCTFTKLEGLMFKV---NNEYDSALKHLTLCLIDASPCTFTK 121 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~----~~~~~~~~~~la~~~~~---~~~~~~A~~~~~~~l~~~~~~~~~~ 121 (324)
.+++...+-.+|....+|+.-++..+..- . -+.........|..+.. .|+.++|+..+..++.......
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~--- 216 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPD--- 216 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCC---
Confidence 35577788889999999999888888665 3 23334445556777777 7999999999999665433322
Q ss_pred HHHHHHHHHHHHHh---------hcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHH--
Q psy8160 122 LEVRFHIAHLHEVQ---------RKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCL-- 190 (324)
Q Consensus 122 ~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~-- 190 (324)
++++..+|.+|... ...++|+..|.++...+ |+.. .-.+++.+........ ..-.+..+.-
T Consensus 217 ~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y---~GIN~AtLL~~~g~~~---~~~~el~~i~~~ 288 (374)
T PF13281_consen 217 PDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYY---SGINAATLLMLAGHDF---ETSEELRKIGVK 288 (374)
T ss_pred hHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--cccc---chHHHHHHHHHcCCcc---cchHHHHHHHHH
Confidence 47888888888643 24789999999999988 6542 2233333332211110 0111111111
Q ss_pred -HHHh-hhC--CccHHH--HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q psy8160 191 -QKSI-EAD--PKSGQS--LYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNAD 236 (324)
Q Consensus 191 -~~al-~~~--~~~~~~--~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 236 (324)
...+ +.. ....+. +-.++.+..-.|++++|++++++++.+.|....
T Consensus 289 l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 289 LSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 1111 111 111233 335677788899999999999999998766543
No 278
>KOG4507|consensus
Probab=96.86 E-value=0.0041 Score=55.55 Aligned_cols=106 Identities=12% Similarity=0.090 Sum_probs=83.1
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
|......|+...|+.++..++... |... ...+.+++.+... .+-.-+|-.++.+++.+....|-..+.+|
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~--p~~~-~v~~v~la~~~~~-------~~~~~da~~~l~q~l~~~~sepl~~~~~g 683 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLA--PLQQ-DVPLVNLANLLIH-------YGLHLDATKLLLQALAINSSEPLTFLSLG 683 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccC--hhhh-cccHHHHHHHHHH-------hhhhccHHHHHHHHHhhcccCchHHHhcc
Confidence 333445689999999999998877 5431 2356677777654 23566789999999999888888899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHH
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNK 244 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 244 (324)
+.+....+.+.|++.|+.|++.+|+++..-..|-.+
T Consensus 684 ~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 684 NAYLALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred hhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 999999999999999999999999998876655433
No 279
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.83 E-value=0.031 Score=38.93 Aligned_cols=48 Identities=19% Similarity=0.360 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q psy8160 184 TLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKS 231 (324)
Q Consensus 184 ~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 231 (324)
-.+++++.++..+.|..+..++.+|.-+-...-|+++..-.++++.+.
T Consensus 61 l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 61 LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 348889999999999999999999987777777888888888887653
No 280
>KOG3824|consensus
Probab=96.81 E-value=0.0028 Score=52.11 Aligned_cols=64 Identities=16% Similarity=0.230 Sum_probs=59.1
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 243 (324)
.|+.++|...|+.++.++|.+++++..+|......++.-+|-.+|-+|+.++|.+.++..+.+.
T Consensus 129 ~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 129 DGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred ccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 4489999999999999999999999999999999999999999999999999999998876543
No 281
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.78 E-value=0.13 Score=38.58 Aligned_cols=100 Identities=13% Similarity=0.033 Sum_probs=82.0
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.++.+++...+.-.--+.|..+..-..-|++++..|++.+|+..++.+....|..+.+--.++.|+...++
T Consensus 23 ~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D--------- 93 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD--------- 93 (160)
T ss_pred cCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC---------
Confidence 33788888888888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHHHcCCCCcchHHHHHHHhhhc
Q psy8160 260 NKYRDLGDFLVINNIPTSNNNRQCYNSYSTS 290 (324)
Q Consensus 260 ~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~ 290 (324)
..|...+.--...+--.. +...-+..+..
T Consensus 94 ~~Wr~~A~evle~~~d~~--a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 94 PSWRRYADEVLESGADPD--ARALVRALLAR 122 (160)
T ss_pred hHHHHHHHHHHhcCCChH--HHHHHHHHHHh
Confidence 667776665444444444 56555555543
No 282
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.71 E-value=0.0065 Score=36.35 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHH
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEG 91 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la 91 (324)
+.++.+|..+++.|+|++|..+.+.++ .+|++..+..+..
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 467899999999999999999999999 9999977765543
No 283
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.69 E-value=0.03 Score=37.87 Aligned_cols=66 Identities=18% Similarity=0.171 Sum_probs=46.6
Q ss_pred HHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCC--chhhHHHHHHHHhcccHH
Q psy8160 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASP--CTFTKLEGLMFKVNNEYD 101 (324)
Q Consensus 33 A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~--~~~~~~la~~~~~~~~~~ 101 (324)
.+..+++.+..+|+ +.++.+.+|..+...|+++.|++.+-.++ .++++ ..+...+-.++...|.-+
T Consensus 7 ~~~al~~~~a~~P~---D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 7 DIAALEAALAANPD---DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHHSTT----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred cHHHHHHHHHcCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 46677888888876 45689999999999999999999999999 77655 555555555555555433
No 284
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.64 E-value=0.42 Score=41.98 Aligned_cols=51 Identities=8% Similarity=-0.001 Sum_probs=42.3
Q ss_pred HHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhhc
Q psy8160 268 FLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRDL 322 (324)
Q Consensus 268 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 322 (324)
.+...|++.+ +.-+-.-..++.| +|.+..-++. +....++|.+|++.++++
T Consensus 471 yLysqgey~k--c~~ys~WL~~iaP-S~~~~RLlGl-~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 471 YLYSQGEYHK--CYLYSSWLTKIAP-SPQAYRLLGL-CLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHhcccHHH--HHHHHHHHHHhCC-cHHHHHHHHH-HHHHHhhHHHHHHHHHhC
Confidence 3567899999 9999899999999 6777776664 567889999999999886
No 285
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=96.64 E-value=0.005 Score=31.95 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHh-cCCC
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHLTLCL-IDAS 82 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~ 82 (324)
.+++.+|.++...++++.|..+|++++ .+|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 367888999999999999999999888 7664
No 286
>KOG3364|consensus
Probab=96.59 E-value=0.015 Score=41.82 Aligned_cols=78 Identities=14% Similarity=0.141 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhh-hCCcc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIE-ADPKS-GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADT 237 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~~~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 237 (324)
.+..++++|+...-. ...+..+.+.+++..++ ..|.. -+..|.|+..+...++|+.|+.+.+..++..|++..+
T Consensus 32 ~~s~f~lAwaLV~S~----~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSR----DTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred HHHHHHHHHHHHccc----chHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 458889999885411 14478899999999996 44443 3788999999999999999999999999999999877
Q ss_pred HHHh
Q psy8160 238 WCSI 241 (324)
Q Consensus 238 ~~~l 241 (324)
...-
T Consensus 108 ~~Lk 111 (149)
T KOG3364|consen 108 LELK 111 (149)
T ss_pred HHHH
Confidence 5443
No 287
>KOG2396|consensus
Probab=96.55 E-value=0.017 Score=50.73 Aligned_cols=91 Identities=9% Similarity=-0.005 Sum_probs=73.8
Q ss_pred HHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHh
Q psy8160 185 LAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRD 264 (324)
Q Consensus 185 ~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~ 264 (324)
.-...|+.++...+.+...|.....-..+.+.+.+--..|.+++..+|++++.|..-+.-.+..+.
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~-------------- 154 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINL-------------- 154 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhcc--------------
Confidence 345778888888888999998887777777778899999999999999999999988877666665
Q ss_pred hHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhc
Q psy8160 265 LGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNN 300 (324)
Q Consensus 265 lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 300 (324)
+.+. |...|.+++..+|++|.++..
T Consensus 155 ---------ni~s--aRalflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 155 ---------NIES--ARALFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred ---------chHH--HHHHHHHHhhcCCCChHHHHH
Confidence 3566 888888888888888876554
No 288
>PRK10941 hypothetical protein; Provisional
Probab=96.46 E-value=0.025 Score=46.79 Aligned_cols=62 Identities=16% Similarity=0.121 Sum_probs=53.6
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHh
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSI 241 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 241 (324)
.++++.|+.+.+..+.+.|+++.-+...|.+|.+.|.+..|..-++..++..|+++.+-.-.
T Consensus 194 ~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik 255 (269)
T PRK10941 194 EKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIR 255 (269)
T ss_pred cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence 45899999999999999999998888899999999999999999999999999888775443
No 289
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.45 E-value=0.83 Score=43.07 Aligned_cols=278 Identities=17% Similarity=0.145 Sum_probs=161.7
Q ss_pred HHHHHHHHHHhc-cCCCcccchHHHHHHHHHHH-HhccHHHHHHHHHHHh-cC--CCCchh----hHHHHHHHHhcccHH
Q psy8160 31 IKAIKTFQQLLY-VDPSYLRANEVHLRLGLMFK-VNNEYDSALKHLTLCL-ID--ASPCTF----TKLEGLMFKVNNEYD 101 (324)
Q Consensus 31 ~~A~~~~~~~l~-~~p~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al-~~--~~~~~~----~~~la~~~~~~~~~~ 101 (324)
..|+..++-+++ ..+.......+++++|.+++ .+.+++.|..++.+++ +. ++..+. ..+++.++...+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 778888888884 33333345668999999988 7899999999999998 44 222222 234788888888777
Q ss_pred HHHHHHHHHHHhcCCCcccHHHHHHHH--HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHH--HHHHHhhhhhc
Q psy8160 102 SALKHLTLCLIDASPCTFTKLEVRFHI--AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQL--GWMYHCIDTLG 177 (324)
Q Consensus 102 ~A~~~~~~~l~~~~~~~~~~~~~~~~l--a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l--~~~~~~~~~~~ 177 (324)
|....++.+............-.+++ .......+++..|++.++........+.+....+...+ +.++..
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~----- 191 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLR----- 191 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc-----
Confidence 99999999877555332222222222 22232337999999999998876633344332233332 233322
Q ss_pred ccchhHHHHHHHHHHHhhh------CC----ccHHHHHHHHH--HHHHcCCHHHHHHHHH---HHHcc---CC---C---
Q psy8160 178 EKSHRETLAIHCLQKSIEA------DP----KSGQSLYLLGR--CFAAVGKVHDAFLAYR---NSVEK---SE---G--- 233 (324)
Q Consensus 178 ~~~~~~~~A~~~~~~al~~------~~----~~~~~~~~lg~--~~~~~~~~~~A~~~~~---~al~~---~p---~--- 233 (324)
.+..+++++.++++... +| ..-.+|..+-. ++...|+++.+....+ ..+.. .| .
T Consensus 192 --~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~ 269 (608)
T PF10345_consen 192 --RGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDE 269 (608)
T ss_pred --CCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCC
Confidence 22455566666655321 11 12244544433 4456676655544432 22221 11 0
Q ss_pred C------------------------------HHHHHHhHHHHhhcCCCHHHHHHHH------------------------
Q psy8160 234 N------------------------------ADTWCSIGNKDFSNNSNREDYHQAL------------------------ 259 (324)
Q Consensus 234 ~------------------------------~~~~~~lg~~~~~~~~~~~~A~~~~------------------------ 259 (324)
+ .-++..=|.+....+. .+.|.+++
T Consensus 270 d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~-~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~ 348 (608)
T PF10345_consen 270 DGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGS-MDKSEKFLEKALKQIEKLKIKSPSAPSESLSE 348 (608)
T ss_pred CeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccC-chHHHHHHHHHHHHHHHhhccCCCCCCcCHHH
Confidence 0 0112223555566666 65666555
Q ss_pred -------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcC---CC------hhhhhhchhhhccCChhhHHHHHH
Q psy8160 260 -------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSI---AS------CKHINNNKDFSNNSNREDYHQALN 317 (324)
Q Consensus 260 -------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~---p~------~~~~~~~l~~~~~~~~~~~~~a~~ 317 (324)
.+.+.++.+....+++.. |....+.+.+.. |. .|.+..-.+.. ....|+.+.|+.
T Consensus 349 ~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~--a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~-~q~~g~l~~A~~ 425 (608)
T PF10345_consen 349 ASERIQWLRYLQCYLLFYQIWCNFIRGDWSK--ATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLY-YQSTGDLEAALY 425 (608)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHCcCHHH--HHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHH-HHHcCCHHHHHH
Confidence 344556666777788888 888887666542 22 23333333332 245699999999
Q ss_pred HHh
Q psy8160 318 KYR 320 (324)
Q Consensus 318 ~~~ 320 (324)
.|+
T Consensus 426 ~y~ 428 (608)
T PF10345_consen 426 QYQ 428 (608)
T ss_pred HHh
Confidence 997
No 290
>KOG1464|consensus
Probab=96.38 E-value=0.43 Score=39.05 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhccCCCcc-cchHHHHHHHHHHHHhccHHHHHHHHHHHh
Q psy8160 31 IKAIKTFQQLLYVDPSYL-RANEVHLRLGLMFKVNNEYDSALKHLTLCL 78 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 78 (324)
++|+..|++++++.|... ..-.++-.+-.+++.+++|++-++.|++.+
T Consensus 44 ~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 44 KEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred HHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 899999999999998532 122355566677888888887777776655
No 291
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.38 E-value=0.58 Score=40.57 Aligned_cols=134 Identities=11% Similarity=0.061 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-C-
Q psy8160 161 DICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP----KSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG-N- 234 (324)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~- 234 (324)
..+..++.+.+. .|.++.|...+.++....+ ..+.+.+..+.+....|+..+|+..++..+..... .
T Consensus 147 ~~~l~~a~~aRk-------~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~ 219 (352)
T PF02259_consen 147 ETWLKFAKLARK-------AGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNI 219 (352)
T ss_pred HHHHHHHHHHHH-------CCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc
Confidence 345555555544 4578888888888776542 14566777788888888888888888777762211 1
Q ss_pred -HHHHHHhHHHH----hh---cC-CCHHHHHHHHHHHHhhHHHHHHc------CCCCcchHHHHHHHhhhcCCChhhhhh
Q psy8160 235 -ADTWCSIGNKD----FS---NN-SNREDYHQALNKYRDLGDFLVIN------NIPTSNNNRQCYNSYSTSIASCKHINN 299 (324)
Q Consensus 235 -~~~~~~lg~~~----~~---~~-~~~~~A~~~~~~~~~lg~~~~~~------~~~~~~~A~~~~~~al~~~p~~~~~~~ 299 (324)
+.....+.... .. .. . .......-.++..+|...... +..++ ++..|.++++.+|+....+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~--~~~~~~~a~~~~~~~~k~~~ 296 (352)
T PF02259_consen 220 DSISNAELKSGLLESLEVISSTNLD-KESKELKAKAFLLLAKWLDELYSKLSSESSDE--ILKYYKEATKLDPSWEKAWH 296 (352)
T ss_pred ccccHHHHhhccccccccccccchh-hhhHHHHHHHHHHHHHHHHhhccccccccHHH--HHHHHHHHHHhChhHHHHHH
Confidence 11101111000 00 00 1 111111116677777777777 67788 99999999999999887776
Q ss_pred chhhh
Q psy8160 300 NKDFS 304 (324)
Q Consensus 300 ~l~~~ 304 (324)
.++..
T Consensus 297 ~~a~~ 301 (352)
T PF02259_consen 297 SWALF 301 (352)
T ss_pred HHHHH
Confidence 66543
No 292
>PRK10941 hypothetical protein; Provisional
Probab=96.35 E-value=0.023 Score=47.04 Aligned_cols=71 Identities=7% Similarity=-0.100 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHH
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNR 281 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~ 281 (324)
....++-.++...++++.|+.+.+..+.++|+++.-|...|.+|.+.|. +.. |.
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c------------------------~~~--A~ 235 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDC------------------------EHV--AL 235 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------------------cHH--HH
Confidence 4566788899999999999999999999999999999999999999888 455 77
Q ss_pred HHHHHhhhcCCChhhhh
Q psy8160 282 QCYNSYSTSIASCKHIN 298 (324)
Q Consensus 282 ~~~~~al~~~p~~~~~~ 298 (324)
..++..++..|++|.+.
T Consensus 236 ~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 236 SDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHhCCCchhHH
Confidence 77777777777777543
No 293
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.34 E-value=1 Score=42.97 Aligned_cols=100 Identities=9% Similarity=0.086 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh--c-CCCCc-------hhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcc-cH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL--I-DASPC-------TFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTF-TK 121 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al--~-~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~-~~ 121 (324)
.....+.......++.+|..+..++. . .|+.. .+.-+.|.+....|+++.|++..+.++..-|.... ..
T Consensus 417 Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r 496 (894)
T COG2909 417 LVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSR 496 (894)
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhh
Confidence 44455666677888888888887766 2 23222 22333578888899999999999999988777654 56
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 152 (324)
..+...+|.+..-.|++++|..+.+++.+..
T Consensus 497 ~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a 527 (894)
T COG2909 497 IVALSVLGEAAHIRGELTQALALMQQAEQMA 527 (894)
T ss_pred hhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence 6778889999999999999999999988764
No 294
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.26 E-value=0.58 Score=40.15 Aligned_cols=122 Identities=13% Similarity=0.109 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhc--
Q psy8160 100 YDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLG-- 177 (324)
Q Consensus 100 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~-- 177 (324)
.+.-+..+++||..+|.+. .++..+-.+.....+.++..+-+++++..+ |++.. .|...-... +...+
T Consensus 47 ~E~klsilerAL~~np~~~----~L~l~~l~~~~~~~~~~~l~~~we~~l~~~--~~~~~--LW~~yL~~~--q~~~~~f 116 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSE----RLLLGYLEEGEKVWDSEKLAKKWEELLFKN--PGSPE--LWREYLDFR--QSNFASF 116 (321)
T ss_pred HHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCChH--HHHHHHHHH--HHHhccC
Confidence 3455677888888877554 555555555556667777778888888887 76633 444332222 11111
Q ss_pred ---ccchhHHHHHHHHHHHhhhC----Ccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q psy8160 178 ---EKSHRETLAIHCLQKSIEAD----PKS-------GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKS 231 (324)
Q Consensus 178 ---~~~~~~~~A~~~~~~al~~~----~~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 231 (324)
+...-+.+++..+....... +.. ..+...+.......|..+.|+..++-.++++
T Consensus 117 ~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 117 TVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred cHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 11123334444433333221 000 1345566667778899999999998888865
No 295
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.18 E-value=1.2 Score=42.07 Aligned_cols=249 Identities=12% Similarity=0.036 Sum_probs=145.3
Q ss_pred HHHHHHHHHHhccCCC--ccc-chHHHHHHHHHHHHhccHHHHHHHHHHHh-c-CC--CCchhh--HHH-HHHHHhcccH
Q psy8160 31 IKAIKTFQQLLYVDPS--YLR-ANEVHLRLGLMFKVNNEYDSALKHLTLCL-I-DA--SPCTFT--KLE-GLMFKVNNEY 100 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~--~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~-~~--~~~~~~--~~l-a~~~~~~~~~ 100 (324)
+.|..+.++++.+... +.. .-.+.+-++.++.+.+... |+...++.+ . +. .....+ ..+ ..+....+++
T Consensus 77 ~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~ 155 (608)
T PF10345_consen 77 DLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDY 155 (608)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccH
Confidence 9999999999887743 211 1234556778888777766 999999988 2 22 111111 112 3333334899
Q ss_pred HHHHHHHHHHHHhcC--CCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC------CCCchhhHHHHHHHHHHHh
Q psy8160 101 DSALKHLTLCLIDAS--PCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDD------LPVHLKADICRQLGWMYHC 172 (324)
Q Consensus 101 ~~A~~~~~~~l~~~~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~~~~~l~~~~~~ 172 (324)
..|++.++....... .+.....-+....+.++...+..+.+++..+++..... .+....-.++..+-.+...
T Consensus 156 ~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~ 235 (608)
T PF10345_consen 156 NAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCS 235 (608)
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHH
Confidence 999999999876643 22222222333346677777878888888887754321 1111112355555444432
Q ss_pred hhhhcccchhHHHHHHHHHHHhhh---CC---c---c-----------------H-------------HHHHHHHHHHHH
Q psy8160 173 IDTLGEKSHRETLAIHCLQKSIEA---DP---K---S-----------------G-------------QSLYLLGRCFAA 213 (324)
Q Consensus 173 ~~~~~~~~~~~~~A~~~~~~al~~---~~---~---~-----------------~-------------~~~~~lg~~~~~ 213 (324)
.. .|+ .....+.+.-++..++. .| . + + -++..-|.+...
T Consensus 236 l~-~~~-~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~ 313 (608)
T PF10345_consen 236 LQ-QGD-VKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLY 313 (608)
T ss_pred HH-cCC-HHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhh
Confidence 11 121 11122222223322221 11 0 0 1 123334666777
Q ss_pred cCCHHHHHHHHHHHHccC-------CCC-------------------HHHHHHhHHHHhhcCCCHHHHHHHH--------
Q psy8160 214 VGKVHDAFLAYRNSVEKS-------EGN-------------------ADTWCSIGNKDFSNNSNREDYHQAL-------- 259 (324)
Q Consensus 214 ~~~~~~A~~~~~~al~~~-------p~~-------------------~~~~~~lg~~~~~~~~~~~~A~~~~-------- 259 (324)
.+..++|.+++.++++.- |.. ....+.++.+..-.++ +..|....
T Consensus 314 ~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~-~~~a~~~l~~~~~~~~ 392 (608)
T PF10345_consen 314 KGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGD-WSKATQELEFMRQLCQ 392 (608)
T ss_pred ccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHHHh
Confidence 777778888888887531 111 1123456777888899 98887666
Q ss_pred ------------HHHHhhHHHHHHcCCCCcchHHHHHH
Q psy8160 260 ------------NKYRDLGDFLVINNIPTSNNNRQCYN 285 (324)
Q Consensus 260 ------------~~~~~lg~~~~~~~~~~~~~A~~~~~ 285 (324)
.+++..|..+...|+.+. |...|.
T Consensus 393 ~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~--A~~~y~ 428 (608)
T PF10345_consen 393 RSPSKLYESLYPLLHYLLGLYYQSTGDLEA--ALYQYQ 428 (608)
T ss_pred cCccchhhhhhHHHHHHHHHHHHHcCCHHH--HHHHHh
Confidence 446788999999999999 999998
No 296
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.12 E-value=0.35 Score=42.14 Aligned_cols=102 Identities=12% Similarity=0.022 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCC-chhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC----
Q psy8160 124 VRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPV-HLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP---- 198 (324)
Q Consensus 124 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~---- 198 (324)
+.+.........|-+..|.+..+-++.++ |. +.. -+...+-....+ .++++=-+.+++.......
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLd--p~~DP~-g~ll~ID~~ALr-------s~~y~~Li~~~~~~~~~~~~~~~ 174 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLD--PDEDPL-GVLLFIDYYALR-------SRQYQWLIDFSESPLAKCYRNWL 174 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcC--CCCCcc-hhHHHHHHHHHh-------cCCHHHHHHHHHhHhhhhhhhhh
Confidence 45555677778899999999999999999 65 321 133333322222 2255555555555443211
Q ss_pred -ccHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHccCCCCH
Q psy8160 199 -KSGQSLYLLGRCFAAVGKV---------------HDAFLAYRNSVEKSEGNA 235 (324)
Q Consensus 199 -~~~~~~~~lg~~~~~~~~~---------------~~A~~~~~~al~~~p~~~ 235 (324)
.-|..-+.++.+++..++. ++|-..+.+|+...|.-.
T Consensus 175 ~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 175 SLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred hhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 1235667788888888888 899999999999887543
No 297
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.11 E-value=0.11 Score=40.31 Aligned_cols=102 Identities=12% Similarity=-0.029 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCc---hhhHHHHHHHHhcccHHHHHHHHHHHHHhcCC--CcccHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPC---TFTKLEGLMFKVNNEYDSALKHLTLCLIDASP--CTFTKLEV 124 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~~ 124 (324)
..++..+|..|...||++.|++.|.++. -..+.. .....+-.+....+++.....+..++-..... +...+..+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3578899999999999999999999977 322222 22334577777889999999999988544332 22222233
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHhcC
Q psy8160 125 RFHIAHLHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 125 ~~~la~~~~~~~~~~~A~~~~~~al~~~ 152 (324)
...-|..+...++|.+|...|-.+....
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 4444777788899999999998776544
No 298
>KOG2396|consensus
Probab=96.10 E-value=0.083 Score=46.66 Aligned_cols=89 Identities=6% Similarity=-0.005 Sum_probs=68.4
Q ss_pred HHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCC-HHH
Q psy8160 141 AKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGK-VHD 219 (324)
Q Consensus 141 A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~-~~~ 219 (324)
-...|+.++... +.++. .|..-.....+ .+.+.+--..|.+++..+|++++.|..-+.-.+..+. .+.
T Consensus 90 Iv~lyr~at~rf--~~D~~--lW~~yi~f~kk-------~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~s 158 (568)
T KOG2396|consen 90 IVFLYRRATNRF--NGDVK--LWLSYIAFCKK-------KKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIES 158 (568)
T ss_pred HHHHHHHHHHhc--CCCHH--HHHHHHHHHHH-------hcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHH
Confidence 345778888877 66533 55553333222 2247778889999999999999999998877666665 999
Q ss_pred HHHHHHHHHccCCCCHHHHHH
Q psy8160 220 AFLAYRNSVEKSEGNADTWCS 240 (324)
Q Consensus 220 A~~~~~~al~~~p~~~~~~~~ 240 (324)
|...|.++++.+|++|..|..
T Consensus 159 aRalflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 159 ARALFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred HHHHHHHHhhcCCCChHHHHH
Confidence 999999999999999999864
No 299
>KOG1464|consensus
Probab=96.04 E-value=0.67 Score=37.97 Aligned_cols=204 Identities=12% Similarity=0.088 Sum_probs=112.3
Q ss_pred hccHHHHHHHHHHHh-cCCCCchhhHH----HHHHHHhcccHHHHHHHHHHHHHhcCCCcc--cHHHHHHHHHHHHHHhh
Q psy8160 64 NNEYDSALKHLTLCL-IDASPCTFTKL----EGLMFKVNNEYDSALKHLTLCLIDASPCTF--TKLEVRFHIAHLHEVQR 136 (324)
Q Consensus 64 ~~~~~~A~~~~~~al-~~~~~~~~~~~----la~~~~~~~~~~~A~~~~~~~l~~~~~~~~--~~~~~~~~la~~~~~~~ 136 (324)
..+.++|+..|++++ ..+....+..- +-.+...+++|++-.+.|.+.+.-...... ........+-..-....
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 458999999999999 88777665433 577888999999999999999853211000 00011112211111122
Q ss_pred cHHHHHHHHHHHHh---cCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH---------HHH
Q psy8160 137 KYKTAKDSYEQLLK---EDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG---------QSL 204 (324)
Q Consensus 137 ~~~~A~~~~~~al~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~---------~~~ 204 (324)
+.+--.+.|+..++ ... ...+...+-..+|.+|+.....+ +.++-+.-+.+..+.+.... ++|
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAK-NeRLWFKTNtKLgkl~fd~~e~~----kl~KIlkqLh~SCq~edGedD~kKGtQLLEiY 194 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAK-NERLWFKTNTKLGKLYFDRGEYT----KLQKILKQLHQSCQTEDGEDDQKKGTQLLEIY 194 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhh-cceeeeeccchHhhhheeHHHHH----HHHHHHHHHHHHhccccCchhhhccchhhhhH
Confidence 22222233333322 110 11122335567788886633222 33344444444443322111 333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCH--HHH----HHhHHHHhhcCCCHHHHHHHH------------------H
Q psy8160 205 YLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA--DTW----CSIGNKDFSNNSNREDYHQAL------------------N 260 (324)
Q Consensus 205 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~----~~lg~~~~~~~~~~~~A~~~~------------------~ 260 (324)
-.--++|-.+++-.+-...|++++.+...-| ... -.=|..+.+.|+ |++|-..| -
T Consensus 195 AlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~-fe~AhTDFFEAFKNYDEsGspRRttCL 273 (440)
T KOG1464|consen 195 ALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGE-FEKAHTDFFEAFKNYDESGSPRRTTCL 273 (440)
T ss_pred hhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccch-HHHHHhHHHHHHhcccccCCcchhHHH
Confidence 3334667777777777788999987764432 222 223556788888 99887666 3
Q ss_pred HHHhhHHHHHHcC
Q psy8160 261 KYRDLGDFLVINN 273 (324)
Q Consensus 261 ~~~~lg~~~~~~~ 273 (324)
.|.-|+..+.+.|
T Consensus 274 KYLVLANMLmkS~ 286 (440)
T KOG1464|consen 274 KYLVLANMLMKSG 286 (440)
T ss_pred HHHHHHHHHHHcC
Confidence 4555666666655
No 300
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.03 E-value=0.79 Score=39.97 Aligned_cols=152 Identities=20% Similarity=0.105 Sum_probs=98.7
Q ss_pred hccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-c-C----CCC---------------------chhhHH---H
Q psy8160 41 LYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-I-D----ASP---------------------CTFTKL---E 90 (324)
Q Consensus 41 l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~-~----~~~---------------------~~~~~~---l 90 (324)
+...|- -.+.+..++.++..+|+.+.|.+..++|+ . + |.. ..++.. .
T Consensus 33 l~~~Py---HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~ 109 (360)
T PF04910_consen 33 LQKNPY---HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRY 109 (360)
T ss_pred HHHCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHH
Confidence 344543 45689999999999999999999999987 3 1 111 111111 3
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC------CCCCchhhHHHH
Q psy8160 91 GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED------DLPVHLKADICR 164 (324)
Q Consensus 91 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~~~~ 164 (324)
...+...|-+..|+++.+-.+..+|..... -+++.+=......++++--++.++...... ..|+ ..+
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~--g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-----~a~ 182 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPL--GVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-----FAF 182 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcc--hhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-----HHH
Confidence 566678899999999999999998884321 345555555566677776677766654421 1132 455
Q ss_pred HHHHHHHhhhhh--------cccchhHHHHHHHHHHHhhhCCccHH
Q psy8160 165 QLGWMYHCIDTL--------GEKSHRETLAIHCLQKSIEADPKSGQ 202 (324)
Q Consensus 165 ~l~~~~~~~~~~--------~~~~~~~~~A~~~~~~al~~~~~~~~ 202 (324)
..+.+++..+.. .......+.|...+.+|+...|.-..
T Consensus 183 S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~ 228 (360)
T PF04910_consen 183 SIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLV 228 (360)
T ss_pred HHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHH
Confidence 556666553221 00122458899999999999885443
No 301
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.02 E-value=0.22 Score=36.80 Aligned_cols=97 Identities=9% Similarity=-0.034 Sum_probs=83.4
Q ss_pred hhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHH
Q psy8160 181 HRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALN 260 (324)
Q Consensus 181 ~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~ 260 (324)
.+.+++...+.-.--+.|+.+..-..-|.++...|+|.+|+..++...+..+..+-.--.++.|+..+|+ .
T Consensus 24 ~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D---------p 94 (153)
T TIGR02561 24 ADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD---------A 94 (153)
T ss_pred CCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC---------h
Confidence 3778888888887789999999999999999999999999999999988888888888899999999999 7
Q ss_pred HHHhhHHHHHHcCCCCcchHHHHHHHhh
Q psy8160 261 KYRDLGDFLVINNIPTSNNNRQCYNSYS 288 (324)
Q Consensus 261 ~~~~lg~~~~~~~~~~~~~A~~~~~~al 288 (324)
.|...+.-....+...+ |+..-+...
T Consensus 95 ~Wr~~A~~~le~~~~~~--a~~Lv~al~ 120 (153)
T TIGR02561 95 EWHVHADEVLARDADAD--AVALVRALL 120 (153)
T ss_pred HHHHHHHHHHHhCCCHh--HHHHHHHHh
Confidence 78888877777777777 777666554
No 302
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.95 E-value=0.13 Score=35.88 Aligned_cols=91 Identities=12% Similarity=0.065 Sum_probs=60.4
Q ss_pred HHHHHHhccHHHHHHHHHHHh-cCCCCc---hhhHHHHHHHHhcc-----------cHHHHHHHHHHHHHhcCCCcccHH
Q psy8160 58 GLMFKVNNEYDSALKHLTLCL-IDASPC---TFTKLEGLMFKVNN-----------EYDSALKHLTLCLIDASPCTFTKL 122 (324)
Q Consensus 58 g~~~~~~~~~~~A~~~~~~al-~~~~~~---~~~~~la~~~~~~~-----------~~~~A~~~~~~~l~~~~~~~~~~~ 122 (324)
+.-++..|+.-+|++..+..+ ..+... ..+...|.++..+. -.-.++++|.++....|.+ +
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~----A 78 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDS----A 78 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhH----H
Confidence 456677888888888888888 555554 34444566665442 2245677777777666665 3
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcC
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 152 (324)
..++.+|.-+-....|++++.-.++++...
T Consensus 79 ~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~ 108 (111)
T PF04781_consen 79 HSLFELASQLGSVKYYKKAVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 667777776666667777777777776553
No 303
>KOG3364|consensus
Probab=95.91 E-value=0.31 Score=35.29 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHh---hcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc
Q psy8160 123 EVRFHIAHLHEVQ---RKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK 199 (324)
Q Consensus 123 ~~~~~la~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 199 (324)
+..+++++++... .+..+.+.+++.++... .|. ..-+..+.++.-+++ .++|+.++.+.+..++..|+
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~-~rRe~lyYLAvg~yR-------lkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPE-RRRECLYYLAVGHYR-------LKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-Ccc-cchhhhhhhHHHHHH-------HhhHHHHHHHHHHHHhhCCC
Confidence 6788888888765 45677889999998733 133 235577777777766 55999999999999999999
Q ss_pred cHHHHHHHHHH
Q psy8160 200 SGQSLYLLGRC 210 (324)
Q Consensus 200 ~~~~~~~lg~~ 210 (324)
+.++.-..-.+
T Consensus 104 n~Qa~~Lk~~i 114 (149)
T KOG3364|consen 104 NRQALELKETI 114 (149)
T ss_pred cHHHHHHHHHH
Confidence 99876554443
No 304
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.66 E-value=0.23 Score=37.29 Aligned_cols=83 Identities=13% Similarity=0.002 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHL 131 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~ 131 (324)
.++.+..+-...++.+++...+...- ..|.........|.++...|++.+|+..++.+....|..+ .+--.++.|
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p----~~kALlA~C 87 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP----YAKALLALC 87 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh----HHHHHHHHH
Confidence 45556666667777777777777666 7788888888888888888888888888777655554443 344456777
Q ss_pred HHHhhcHH
Q psy8160 132 HEVQRKYK 139 (324)
Q Consensus 132 ~~~~~~~~ 139 (324)
+...++.+
T Consensus 88 L~~~~D~~ 95 (160)
T PF09613_consen 88 LYALGDPS 95 (160)
T ss_pred HHHcCChH
Confidence 77776643
No 305
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.65 E-value=0.49 Score=33.46 Aligned_cols=50 Identities=12% Similarity=0.100 Sum_probs=35.8
Q ss_pred chhHHHHHHHHHHHhhhCCccH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy8160 180 SHRETLAIHCLQKSIEADPKSG------------QSLYLLGRCFAAVGKVHDAFLAYRNSVE 229 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~------------~~~~~lg~~~~~~~~~~~A~~~~~~al~ 229 (324)
-+-+++|...++++++....-| -.+-.|+..+..+|+|++++..-.+++.
T Consensus 22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~ 83 (144)
T PF12968_consen 22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR 83 (144)
T ss_dssp HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3478899999999987543322 3455678889999999998888888774
No 306
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.63 E-value=0.27 Score=38.10 Aligned_cols=105 Identities=8% Similarity=-0.036 Sum_probs=72.5
Q ss_pred chhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh--h-
Q psy8160 84 CTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK--A- 160 (324)
Q Consensus 84 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~- 160 (324)
..++..+|..|...|+.+.|++.|.++..... +.....++++.+-.+....+++.....+..++-..-..+.+.. .
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~-~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCT-SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 34556689999999999999999999775432 3335567888888888899999999988888865542222211 1
Q ss_pred -HHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC
Q psy8160 161 -DICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP 198 (324)
Q Consensus 161 -~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 198 (324)
.++..+..+. .++|..|...|-.+.....
T Consensus 115 lk~~~gL~~l~---------~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 115 LKVYEGLANLA---------QRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHHH---------hchHHHHHHHHHccCcCCC
Confidence 1223333222 4489999988888865553
No 307
>KOG4014|consensus
Probab=95.58 E-value=0.77 Score=35.27 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=16.6
Q ss_pred chHHHHHHHHHHH-HhccHHHHHHHHHHHh
Q psy8160 50 ANEVHLRLGLMFK-VNNEYDSALKHLTLCL 78 (324)
Q Consensus 50 ~~~~~~~lg~~~~-~~~~~~~A~~~~~~al 78 (324)
.++....||...- .+.+|+.|.+.|+.-.
T Consensus 33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~nC 62 (248)
T KOG4014|consen 33 RPESCQLLGDYLEGIQKNFQAAVKVFKKNC 62 (248)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556666665443 3456666666666433
No 308
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.52 E-value=0.032 Score=31.27 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEK 230 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 230 (324)
.++.++|.+|...|++++|..++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 56789999999999999999999999875
No 309
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.41 E-value=0.034 Score=43.99 Aligned_cols=55 Identities=20% Similarity=0.283 Sum_probs=52.3
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 234 (324)
.++.+.|.+.|.+++.+.|.....|+.+|......|+++.|...|++.++++|.+
T Consensus 8 ~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 8 SGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3488889999999999999999999999999999999999999999999999987
No 310
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=95.39 E-value=0.24 Score=48.27 Aligned_cols=107 Identities=9% Similarity=0.080 Sum_probs=84.7
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh-hHHHHHHHHHHHhhhh-hcccchhHHHHHHHHHHHhhhCCccHHHH
Q psy8160 127 HIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK-ADICRQLGWMYHCIDT-LGEKSHRETLAIHCLQKSIEADPKSGQSL 204 (324)
Q Consensus 127 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~l~~~~~~~~~-~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 204 (324)
.....+...+.|+.|+..|+++-... |+..+ .++.++.|........ .|+ ...+++|+.-|++. .-.|.-|--|
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~ 555 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESF--PGRKEGYEAQFRLGITLLEKASEQGD-PRDFTQALSEFSYL-HGGVGAPLEY 555 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcC--CCcccchHHHHHhhHHHHHHHHhcCC-hHHHHHHHHHHHHh-cCCCCCchHH
Confidence 34567788899999999999998887 77644 5688999887765332 222 24688899888885 3446667778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH
Q psy8160 205 YLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADT 237 (324)
Q Consensus 205 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 237 (324)
...|.+|..+|++++=+++|.-|++.-|.+|..
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 556 LGKALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 889999999999999999999999999998764
No 311
>KOG1538|consensus
Probab=95.14 E-value=1.1 Score=41.21 Aligned_cols=45 Identities=13% Similarity=0.112 Sum_probs=29.4
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCC-HHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 210 CFAAVGKVHDAFLAYRNSVEKSEGN-ADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 210 ~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.+.+.++|++|....++ .|.. ++.++-.|.-+....+ +++|.+.|
T Consensus 782 lHve~~~W~eAFalAe~----hPe~~~dVy~pyaqwLAE~Dr-FeEAqkAf 827 (1081)
T KOG1538|consen 782 LHVETQRWDEAFALAEK----HPEFKDDVYMPYAQWLAENDR-FEEAQKAF 827 (1081)
T ss_pred heeecccchHhHhhhhh----CccccccccchHHHHhhhhhh-HHHHHHHH
Confidence 44455667766655433 2332 4566777888888888 88888876
No 312
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.11 E-value=0.17 Score=34.61 Aligned_cols=57 Identities=19% Similarity=0.219 Sum_probs=38.7
Q ss_pred cccHHHHHHHHHHHHHhcCCCcc-----cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC
Q psy8160 97 NNEYDSALKHLTLCLIDASPCTF-----TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDD 153 (324)
Q Consensus 97 ~~~~~~A~~~~~~~l~~~~~~~~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 153 (324)
.|+|.+|++.+.+.++....... ....+..++|.++...|++++|+..+++++.+..
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 45555555555555544322222 1235677889999999999999999999998763
No 313
>KOG1914|consensus
Probab=95.11 E-value=2.5 Score=38.26 Aligned_cols=146 Identities=13% Similarity=0.064 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhc---HHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhh
Q psy8160 100 YDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRK---YKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTL 176 (324)
Q Consensus 100 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~ 176 (324)
.+++.++|++++....... ..+++.++..-...-+ ++..-+.+.+++.+.+.... -++.+.-..-.+
T Consensus 309 t~e~~~~yEr~I~~l~~~~---~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t---Lv~~~~mn~irR---- 378 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKEN---KLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT---LVYCQYMNFIRR---- 378 (656)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc---eehhHHHHHHHH----
Confidence 5777888888775422221 2344444443333323 66667778888766522221 133333333322
Q ss_pred cccchhHHHHHHHHHHHhhhCCccHHHHHHHHHH-HHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHH
Q psy8160 177 GEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRC-FAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDY 255 (324)
Q Consensus 177 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A 255 (324)
..-.+.|...|.++-+......+++..-|.+ |...++..-|...|+-.+...++.|..-......+...++ -..|
T Consensus 379 ---~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNd-d~N~ 454 (656)
T KOG1914|consen 379 ---AEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLND-DNNA 454 (656)
T ss_pred ---hhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCc-chhH
Confidence 2246778888888865543333555555543 6778999999999999999999999988888888888888 7777
Q ss_pred HHHH
Q psy8160 256 HQAL 259 (324)
Q Consensus 256 ~~~~ 259 (324)
...|
T Consensus 455 R~LF 458 (656)
T KOG1914|consen 455 RALF 458 (656)
T ss_pred HHHH
Confidence 7666
No 314
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=95.05 E-value=1.3 Score=34.73 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC----CHHHHHHhHHHHhhcCCCHHHH
Q psy8160 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG----NADTWCSIGNKDFSNNSNREDY 255 (324)
Q Consensus 201 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~~~~~~~A 255 (324)
++..+.||..|. ..+.++|+..+.+++++.+. +++....|+.++.+.|+ ++.|
T Consensus 141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~-~e~A 197 (203)
T PF11207_consen 141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN-YEQA 197 (203)
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc-hhhh
Confidence 444444443333 33344444444444443322 24444444444444444 4443
No 315
>KOG4014|consensus
Probab=94.97 E-value=1.2 Score=34.17 Aligned_cols=54 Identities=11% Similarity=0.113 Sum_probs=23.2
Q ss_pred cHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhh
Q psy8160 137 KYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA 196 (324)
Q Consensus 137 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 196 (324)
++..|+..|..+...+ . ..+...+|.++..-+...+..-+.++|++++.++..+
T Consensus 88 ~l~~a~r~~~~aC~~n--~----~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl 141 (248)
T KOG4014|consen 88 SLSKAIRPMKIACDAN--I----PQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL 141 (248)
T ss_pred CHHHHHHHHHHHhccC--C----HHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC
Confidence 4555555555554433 1 2255555555533211111111244555555555444
No 316
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.93 E-value=0.093 Score=28.51 Aligned_cols=33 Identities=27% Similarity=0.238 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHccCCCC
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLA--YRNSVEKSEGN 234 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~--~~~al~~~p~~ 234 (324)
+.|+.+|..+..+|++++|+.. |+-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 5678888888999999999998 44776666643
No 317
>KOG3824|consensus
Probab=94.86 E-value=0.1 Score=43.23 Aligned_cols=62 Identities=11% Similarity=0.038 Sum_probs=42.2
Q ss_pred HHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCc
Q psy8160 57 LGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCT 118 (324)
Q Consensus 57 lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~ 118 (324)
.+.-....|+.++|.+.|..++ .+|++..+....|.+....++.-+|-.+|-+++...|.+.
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 3334455677777777777777 7777777777777777777777777777777776666554
No 318
>KOG2041|consensus
Probab=94.76 E-value=2.5 Score=39.54 Aligned_cols=183 Identities=13% Similarity=0.003 Sum_probs=102.6
Q ss_pred HHhhhhccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHH----------HHHHHHHHhccHHHHHHHH
Q psy8160 7 KNLVEGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHL----------RLGLMFKVNNEYDSALKHL 74 (324)
Q Consensus 7 ~~~~~~~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~----------~lg~~~~~~~~~~~A~~~~ 74 (324)
++..+.-++|..|..|+...+.-- +.|..+|-++-. ++. ...-- ..+.+-..-|+|++|.+.|
T Consensus 683 ~qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d----Y~G-ik~vkrl~~i~s~~~q~aei~~~~g~feeaek~y 757 (1189)
T KOG2041|consen 683 IQFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGD----YAG-IKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLY 757 (1189)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc----ccc-hhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhh
Confidence 345567778888877777544322 666666655432 221 11122 2334444558899999888
Q ss_pred HHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC
Q psy8160 75 TLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDL 154 (324)
Q Consensus 75 ~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~ 154 (324)
-.+- . ..+--.++...|++-.....++..- ...+.....+++.++|..+.....+++|.++|.+.-...
T Consensus 758 ld~d----r---rDLAielr~klgDwfrV~qL~r~g~--~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e-- 826 (1189)
T KOG2041|consen 758 LDAD----R---RDLAIELRKKLGDWFRVYQLIRNGG--SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTE-- 826 (1189)
T ss_pred hccc----h---hhhhHHHHHhhhhHHHHHHHHHccC--CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH--
Confidence 6332 1 1111234445566655555333211 112222455789999999999999999999997743221
Q ss_pred CCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8160 155 PVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRN 226 (324)
Q Consensus 155 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 226 (324)
+...+++..+ .+++ ++.....-|++...+-.+|..+...|.-++|.+.|-+
T Consensus 827 ----------~~~ecly~le-------~f~~----LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 827 ----------NQIECLYRLE-------LFGE----LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred ----------hHHHHHHHHH-------hhhh----HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 1122333222 2222 2333334466777777777777777777777776643
No 319
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=94.74 E-value=0.076 Score=29.63 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcC
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 152 (324)
.++.++|.+|...|++++|+.++++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 567889999999999999999999988654
No 320
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.71 E-value=2.3 Score=38.19 Aligned_cols=66 Identities=12% Similarity=0.190 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH---HHHHhhHHHHHHcCCC
Q psy8160 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL---NKYRDLGDFLVINNIP 275 (324)
Q Consensus 201 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~---~~~~~lg~~~~~~~~~ 275 (324)
++..+.|+ .+.|+.+.|.+.. ...+++..|..||......|+ ++-|.++| .-+-.|..+|...|+.
T Consensus 321 ~~~rFeLA---l~lg~L~~A~~~a-----~~~~~~~~W~~Lg~~AL~~g~-~~lAe~c~~k~~d~~~L~lLy~~~g~~ 389 (443)
T PF04053_consen 321 PDHRFELA---LQLGNLDIALEIA-----KELDDPEKWKQLGDEALRQGN-IELAEECYQKAKDFSGLLLLYSSTGDR 389 (443)
T ss_dssp HHHHHHHH---HHCT-HHHHHHHC-----CCCSTHHHHHHHHHHHHHTTB-HHHHHHHHHHCT-HHHHHHHHHHCT-H
T ss_pred hHHHhHHH---HhcCCHHHHHHHH-----HhcCcHHHHHHHHHHHHHcCC-HHHHHHHHHhhcCccccHHHHHHhCCH
Confidence 34444443 3445555554422 222345555555555555555 55555555 3334444444444443
No 321
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.70 E-value=0.79 Score=44.92 Aligned_cols=89 Identities=18% Similarity=0.202 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHh----c---cHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVN----N---EYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSA 103 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~----~---~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A 103 (324)
++|+..|++.-...|.-....++.|++|.....+ | .+++|+..|++....|..+--+...|.+|...|+|++-
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (932)
T PRK13184 492 DQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALVYQRLGEYNEE 571 (932)
T ss_pred HHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHHHHHhhhHHHH
Confidence 9999999999999998777788999999987643 2 58899999997777777777788899999999999999
Q ss_pred HHHHHHHHHhcCCCcc
Q psy8160 104 LKHLTLCLIDASPCTF 119 (324)
Q Consensus 104 ~~~~~~~l~~~~~~~~ 119 (324)
++++.-+++..|..+.
T Consensus 572 ~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 572 IKSLLLALKRYSQHPE 587 (932)
T ss_pred HHHHHHHHHhcCCCCc
Confidence 9999999998777653
No 322
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.67 E-value=0.034 Score=45.99 Aligned_cols=87 Identities=11% Similarity=-0.030 Sum_probs=54.3
Q ss_pred HHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHH-HHhhcCCCHHHHHHHHHHHHhhH
Q psy8160 188 HCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN-KDFSNNSNREDYHQALNKYRDLG 266 (324)
Q Consensus 188 ~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~-~~~~~~~~~~~A~~~~~~~~~lg 266 (324)
..|.++....|.++..|...+.--...|.+.+--..|.++++.+|.+.+.|...+. -+...
T Consensus 94 f~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~------------------ 155 (435)
T COG5191 94 FELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEI------------------ 155 (435)
T ss_pred EeeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhh------------------
Confidence 34555556667777777776666666667777777777777777777777765322 22222
Q ss_pred HHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhc
Q psy8160 267 DFLVINNIPTSNNNRQCYNSYSTSIASCKHINNN 300 (324)
Q Consensus 267 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 300 (324)
++++. +...|.+++..+|.+|.+|..
T Consensus 156 ------ani~s--~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 156 ------ANIES--SRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred ------ccHHH--HHHHHHhhhccCCCCchHHHH
Confidence 23555 666666677777666666543
No 323
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=94.59 E-value=0.18 Score=42.12 Aligned_cols=62 Identities=18% Similarity=0.066 Sum_probs=54.0
Q ss_pred HHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhh
Q psy8160 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFS 247 (324)
Q Consensus 186 A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 247 (324)
|+.+|.+|+.+.|.++..+.+||.++...|+.-.|+=+|-+++....-.+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999998776678899999888887
No 324
>KOG4814|consensus
Probab=94.56 E-value=0.85 Score=41.88 Aligned_cols=98 Identities=21% Similarity=0.146 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCch----hhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc
Q psy8160 124 VRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHL----KADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK 199 (324)
Q Consensus 124 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 199 (324)
++.+-|.-++...+|..+++.|...+..- |.+. .+...+.+..||.. ..+.+.|.+++++|-+.+|.
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i--~~D~~~~~FaK~qR~l~~CYL~-------L~QLD~A~E~~~EAE~~d~~ 426 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDI--ISDNYSDRFAKIQRALQVCYLK-------LEQLDNAVEVYQEAEEVDRQ 426 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhc--cchhhhhHHHHHHHHHHHHHhh-------HHHHHHHHHHHHHHHhhccc
Confidence 34444667778889999999999888654 3322 26788888888866 44889999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q psy8160 200 SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK 230 (324)
Q Consensus 200 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 230 (324)
++-....+-.+....++-++|+.+..+....
T Consensus 427 ~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 427 SPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 9988888888888889999999888777654
No 325
>KOG1839|consensus
Probab=94.55 E-value=0.74 Score=45.73 Aligned_cols=170 Identities=13% Similarity=0.059 Sum_probs=119.4
Q ss_pred HHHHHHHHHHhccHHHHHH------HHHHHh--cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcC----CCcccH
Q psy8160 54 HLRLGLMFKVNNEYDSALK------HLTLCL--IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDAS----PCTFTK 121 (324)
Q Consensus 54 ~~~lg~~~~~~~~~~~A~~------~~~~al--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~----~~~~~~ 121 (324)
....|......|.+.+|.+ .+.+.. ..|..+..+..++.++...|++++|+..-.++..... .+....
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t 1014 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNT 1014 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHH
Confidence 4556666666777776666 776655 5788888999999999999999999998888753322 222234
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC---CCchh-hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDL---PVHLK-ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD 197 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 197 (324)
...+.+++...+..++...|...+.++...... |.+.. +.+..+++.++.. .++++.|+.+++.|+...
T Consensus 1015 ~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~-------v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1015 KLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLG-------VEEADTALRYLESALAKN 1087 (1236)
T ss_pred HHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhh-------HHHHHHHHHHHHHHHHHH
Confidence 456778888888888888999888888765311 22211 4466777877644 448999999999998753
Q ss_pred Cc--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q psy8160 198 PK--------SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK 230 (324)
Q Consensus 198 ~~--------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 230 (324)
.. ....+..+++.+..++++..|+...+....+
T Consensus 1088 ~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1088 KKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred hhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 21 2355667777777777777777776665543
No 326
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.51 E-value=2.5 Score=35.47 Aligned_cols=118 Identities=14% Similarity=0.096 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhccC----CCc-ccchHHHHHHHHHHHHhc-cHHHHHHHHHHHh-c----C---CCCch-------hhHH
Q psy8160 31 IKAIKTFQQLLYVD----PSY-LRANEVHLRLGLMFKVNN-EYDSALKHLTLCL-I----D---ASPCT-------FTKL 89 (324)
Q Consensus 31 ~~A~~~~~~~l~~~----p~~-~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al-~----~---~~~~~-------~~~~ 89 (324)
+.|...|.++-... |+. ..-.++++..|......+ +++.|..+++++. . . ..... ....
T Consensus 10 ~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~ 89 (278)
T PF08631_consen 10 DLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRL 89 (278)
T ss_pred HHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHH
Confidence 55666776665544 321 112457889999999999 9999999999988 4 1 11111 1233
Q ss_pred HHHHHHhcccHHHHHHHHH---HHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC
Q psy8160 90 EGLMFKVNNEYDSALKHLT---LCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~---~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 152 (324)
++..+...+.++...++.+ .+-...|.. +.++..-=.+....++.+.+.+.+.+++...
T Consensus 90 La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~----~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 90 LANAYLEWDTYESVEKALNALRLLESEYGNK----PEVFLLKLEILLKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHhCCCC----cHHHHHHHHHHhccCChhHHHHHHHHHHHhc
Confidence 6777777776655444322 222222222 2333222223333677888888888888765
No 327
>KOG3807|consensus
Probab=94.48 E-value=2.7 Score=35.66 Aligned_cols=180 Identities=14% Similarity=0.013 Sum_probs=94.0
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCC----------------
Q psy8160 55 LRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPC---------------- 117 (324)
Q Consensus 55 ~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~---------------- 117 (324)
+.+-....+..+..+-++.-..++ ++|....++.+++.--. .-..+|++.++++++.....
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da 265 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEA 265 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhh
Confidence 344444556666777777777788 88888887777654221 12334444444444321110
Q ss_pred -----cccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcc---------cchhH
Q psy8160 118 -----TFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGE---------KSHRE 183 (324)
Q Consensus 118 -----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~ 183 (324)
.....-+...++.|...+|+..+|++.|+...+.. |-..-..+.-++-.....+....+ .....
T Consensus 266 ~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~--pl~t~lniheNLiEalLE~QAYADvqavLakYDdislP 343 (556)
T KOG3807|consen 266 QLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEF--PLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLP 343 (556)
T ss_pred hhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCc
Confidence 00112356788999999999999999999988776 422112233333322222110000 01112
Q ss_pred HHHHHHHHHHhhh-----CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhH
Q psy8160 184 TLAIHCLQKSIEA-----DPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242 (324)
Q Consensus 184 ~~A~~~~~~al~~-----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 242 (324)
..|.-+|..++-. +.-.+++-...|..-. -..|++...+|++.+|..|.....+-
T Consensus 344 kSA~icYTaALLK~RAVa~kFspd~asrRGLS~A----E~~AvEAihRAvEFNPHVPkYLLE~k 403 (556)
T KOG3807|consen 344 KSAAICYTAALLKTRAVSEKFSPETASRRGLSTA----EINAVEAIHRAVEFNPHVPKYLLEMK 403 (556)
T ss_pred chHHHHHHHHHHHHHHHHhhcCchhhhhccccHH----HHHHHHHHHHHhhcCCCCcHHHHHHH
Confidence 2233333332210 0111222222222211 23589999999999999888766543
No 328
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.44 E-value=0.11 Score=43.14 Aligned_cols=62 Identities=3% Similarity=0.060 Sum_probs=54.6
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHH-HHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHh
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYL-LGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSI 241 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~-lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 241 (324)
.+.+.+--..|.++++.+|.+.+.|.. -+.-+...++++.+...|.+++.++|++|..|...
T Consensus 120 ~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 120 KKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 346778888999999999999999976 55678889999999999999999999999999653
No 329
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.41 E-value=1.2 Score=31.54 Aligned_cols=101 Identities=12% Similarity=0.094 Sum_probs=58.3
Q ss_pred HHHHHHHH--HHHHhhcHHHHHHHHHHHHhcCCCCCchh--------hHHHHHHHHHHHhhhhhcccchhHHHHHHH---
Q psy8160 123 EVRFHIAH--LHEVQRKYKTAKDSYEQLLKEDDLPVHLK--------ADICRQLGWMYHCIDTLGEKSHRETLAIHC--- 189 (324)
Q Consensus 123 ~~~~~la~--~~~~~~~~~~A~~~~~~al~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~--- 189 (324)
.++..|+. -....|-|++|...++++++....-+..+ +-++-.++..+.. .++|++++..
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~-------Lgry~e~L~sA~~ 80 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG-------LGRYDECLQSADR 80 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH-------TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh-------hccHHHHHHHHHH
Confidence 34444433 33455789999999999987653221111 2233333333322 3366655544
Q ss_pred ----HHHHhhhCCccHHHH----HHHHHHHHHcCCHHHHHHHHHHHHcc
Q psy8160 190 ----LQKSIEADPKSGQSL----YLLGRCFAAVGKVHDAFLAYRNSVEK 230 (324)
Q Consensus 190 ----~~~al~~~~~~~~~~----~~lg~~~~~~~~~~~A~~~~~~al~~ 230 (324)
|.+-=+++.+....| +..|..+...|+.++|+..|+.+.++
T Consensus 81 aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 81 ALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 444445666666555 56788889999999999999988653
No 330
>KOG1258|consensus
Probab=94.30 E-value=4.2 Score=37.23 Aligned_cols=183 Identities=11% Similarity=-0.004 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHL 131 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~ 131 (324)
.|......-...|+++.....|++++ -......+|...+......|+.+-|...+..+.....+.. +.++..-+.+
T Consensus 299 nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~---~~i~L~~a~f 375 (577)
T KOG1258|consen 299 NWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKT---PIIHLLEARF 375 (577)
T ss_pred HHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCC---cHHHHHHHHH
Confidence 45555566678899999999999999 7788888888888888888999999887777765543333 2566666777
Q ss_pred HHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHH--HHHHHhhhCCcc----HHHHH
Q psy8160 132 HEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIH--CLQKSIEADPKS----GQSLY 205 (324)
Q Consensus 132 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~--~~~~al~~~~~~----~~~~~ 205 (324)
-...|++..|..+++++.... |+.+. ..+...++.++. ++.+.+.. .+...+.....+ +..+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~--pg~v~-~~l~~~~~e~r~--------~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~ 444 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY--PGLVE-VVLRKINWERRK--------GNLEDANYKNELYSSIYEGKENNGILEKLYV 444 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC--Cchhh-hHHHHHhHHHHh--------cchhhhhHHHHHHHHhcccccCcchhHHHHH
Confidence 888899999999999998877 77643 345555666644 13343431 112222111122 23344
Q ss_pred HHHHH-HHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcC
Q psy8160 206 LLGRC-FAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNN 249 (324)
Q Consensus 206 ~lg~~-~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 249 (324)
..+.. +.-.++.+.|...+.++++..|.+...|..+-.......
T Consensus 445 ~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 445 KFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 44433 455688999999999999999999888887776665554
No 331
>KOG1258|consensus
Probab=94.24 E-value=4.3 Score=37.15 Aligned_cols=261 Identities=8% Similarity=-0.012 Sum_probs=148.7
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHH-HHHHHHhcccHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKL-EGLMFKVNNEYDSALKHLT 108 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~-la~~~~~~~~~~~A~~~~~ 108 (324)
+.+...|...|...|- ....|-.-|..-.+.|..+.+.+.|++++ --|.....|.. ++.+-...|+.+.-...|+
T Consensus 62 ~~~r~~y~~fL~kyPl---~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe 138 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPL---CYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFE 138 (577)
T ss_pred HHHHHHHHHHHhhCcc---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 5566666777766653 33456677777788888889999999888 66666555544 3444445577777777777
Q ss_pred HHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC----------------CCCc---------------
Q psy8160 109 LCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDD----------------LPVH--------------- 157 (324)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~----------------~~~~--------------- 157 (324)
+|......+.... ..|-..-..-..++++..-...|++.++..- .+..
T Consensus 139 ~A~~~vG~dF~S~-~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~ 217 (577)
T KOG1258|consen 139 RAKSYVGLDFLSD-PLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDV 217 (577)
T ss_pred HHHHhcccchhcc-HHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhH
Confidence 7765544332211 1222221111222333333333333332200 0000
Q ss_pred ----------------------------hhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhh-----CCc---cH
Q psy8160 158 ----------------------------LKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA-----DPK---SG 201 (324)
Q Consensus 158 ----------------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~---~~ 201 (324)
........+..........-+........+..++..+.. .|. +-
T Consensus 218 ~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql 297 (577)
T KOG1258|consen 218 AERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQL 297 (577)
T ss_pred HhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHH
Confidence 000000000000000000000011122223333333221 222 22
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH------------HHHHhhHHHH
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL------------NKYRDLGDFL 269 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~------------~~~~~lg~~~ 269 (324)
..|......-...|+++.....|++++--.....+.|...+.-....|. .+-|-..+ .+...-+.+-
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~-~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGD-VSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCc-hhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 5677777777888999999999999998888899999999998888888 87776555 4555556667
Q ss_pred HHcCCCCcchHHHHHHHhhhcCCChhhhh
Q psy8160 270 VINNIPTSNNNRQCYNSYSTSIASCKHIN 298 (324)
Q Consensus 270 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 298 (324)
...|++.. |...+++..+--|+...+-
T Consensus 377 e~~~n~~~--A~~~lq~i~~e~pg~v~~~ 403 (577)
T KOG1258|consen 377 ESNGNFDD--AKVILQRIESEYPGLVEVV 403 (577)
T ss_pred HhhccHHH--HHHHHHHHHhhCCchhhhH
Confidence 77889999 9999999987778866543
No 332
>KOG1310|consensus
Probab=94.18 E-value=0.37 Score=43.12 Aligned_cols=93 Identities=11% Similarity=0.069 Sum_probs=74.1
Q ss_pred hhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHc
Q psy8160 135 QRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAV 214 (324)
Q Consensus 135 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 214 (324)
.+....|+..|.+++... |.. ...+.+.+.++......| +.-.|+.....+++++|....+|+.|+.++...
T Consensus 387 ~~~~~~~i~~~s~a~q~~--~~~--~~~l~nraa~lmkRkW~~----d~~~AlrDch~Alrln~s~~kah~~la~aL~el 458 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYV--PDA--IYLLENRAAALMKRKWRG----DSYLALRDCHVALRLNPSIQKAHFRLARALNEL 458 (758)
T ss_pred hHHHHHHHHHHHHHhhhc--cch--hHHHHhHHHHHHhhhccc----cHHHHHHhHHhhccCChHHHHHHHHHHHHHHHH
Confidence 345667888888888877 665 347777777776644444 667799999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHccCCCCH
Q psy8160 215 GKVHDAFLAYRNSVEKSEGNA 235 (324)
Q Consensus 215 ~~~~~A~~~~~~al~~~p~~~ 235 (324)
+++.+|+.+...+....|.+.
T Consensus 459 ~r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 459 TRYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred hhHHHhhhhHHHHhhcCchhh
Confidence 999999998888877788543
No 333
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.99 E-value=0.071 Score=42.25 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=47.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhh
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYS 288 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al 288 (324)
......++.+.|.+.|.+++.+-|+....|+.+|....+.|+ ++. |.+.|++.+
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~------------------------~da--Aa~a~~~~L 56 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGE------------------------FDA--AAAAYEEVL 56 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhccc------------------------HHH--HHHHHHHHH
Confidence 345567899999999999999999988888888887777777 445 666666666
Q ss_pred hcCCChhh
Q psy8160 289 TSIASCKH 296 (324)
Q Consensus 289 ~~~p~~~~ 296 (324)
+++|.+..
T Consensus 57 ~ldp~D~~ 64 (287)
T COG4976 57 ELDPEDHG 64 (287)
T ss_pred cCCccccc
Confidence 66666543
No 334
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.83 E-value=2.3 Score=32.52 Aligned_cols=95 Identities=11% Similarity=0.075 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchh----hHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTF----TKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFH 127 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~----~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 127 (324)
+.++.|.+....|+-..|+..|..+- ..|.+... ...-+.++...|.|+.-..-.+..- .+....+..+.-.
T Consensus 96 A~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa---~d~n~mR~sArEA 172 (221)
T COG4649 96 ARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLA---GDGNPMRHSAREA 172 (221)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhcc---CCCChhHHHHHHH
Confidence 34445555555555555555555444 22222111 1112334444455544444332221 1111112234444
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHh
Q psy8160 128 IAHLHEVQRKYKTAKDSYEQLLK 150 (324)
Q Consensus 128 la~~~~~~~~~~~A~~~~~~al~ 150 (324)
||..-++.|++.+|.+.|.++..
T Consensus 173 LglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 173 LGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhHHHHhccchHHHHHHHHHHHc
Confidence 45555555555555555555444
No 335
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.81 E-value=0.11 Score=28.58 Aligned_cols=30 Identities=20% Similarity=0.225 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKS 231 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 231 (324)
+++..||.+....++|++|+.-|++++.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 467889999999999999999999998764
No 336
>KOG4814|consensus
Probab=93.80 E-value=1.2 Score=40.96 Aligned_cols=79 Identities=11% Similarity=0.138 Sum_probs=68.7
Q ss_pred chhHHHHHHHHHHHhhhCCccH------HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSG------QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNRE 253 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~ 253 (324)
..+|..++++|...+..-|.+. .....+..||....+.+.|.+.++.|-+.+|.++-....+-......+. -+
T Consensus 367 ~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~-Se 445 (872)
T KOG4814|consen 367 MEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDK-SE 445 (872)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcc-hH
Confidence 4489999999999998766654 4567889999999999999999999999999999888888888888888 88
Q ss_pred HHHHHH
Q psy8160 254 DYHQAL 259 (324)
Q Consensus 254 ~A~~~~ 259 (324)
+|+.+.
T Consensus 446 ~AL~~~ 451 (872)
T KOG4814|consen 446 EALTCL 451 (872)
T ss_pred HHHHHH
Confidence 888877
No 337
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=93.79 E-value=3.2 Score=37.12 Aligned_cols=166 Identities=13% Similarity=-0.029 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCch----hhHHHHHHHHHHHhhhhh-c------ccchhHHHHHHHHH
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHL----KADICRQLGWMYHCIDTL-G------EKSHRETLAIHCLQ 191 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~----~~~~~~~l~~~~~~~~~~-~------~~~~~~~~A~~~~~ 191 (324)
.....+|++.+..++|+.|...|+.+.... ..+. .+.+.-..|.+....... . +...-.+.|...|.
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df--~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~ 286 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDF--KNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYL 286 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHH--hhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHH
Confidence 356678999999999999999998887654 2110 022222222222221111 0 11224566666666
Q ss_pred HH----hhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--C--CC---CHHHHHHhHHHH--hhcCCCHHHH---
Q psy8160 192 KS----IEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK--S--EG---NADTWCSIGNKD--FSNNSNREDY--- 255 (324)
Q Consensus 192 ~a----l~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~--p~---~~~~~~~lg~~~--~~~~~~~~~A--- 255 (324)
++ ......-..+....+.++...+.+.+|...+-+.... + -. .+-.+-.+|.|| ..... ...-
T Consensus 287 ~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~-~~~~~~r 365 (414)
T PF12739_consen 287 KSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNR-PSPGLTR 365 (414)
T ss_pred hhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCC-CCccchh
Confidence 63 2222233356677788888899988877766666554 2 23 345667788888 44422 1111
Q ss_pred HHHHHHHHh-hHHHHHHcCCCCcchHHHHHHHhhhcCCC
Q psy8160 256 HQALNKYRD-LGDFLVINNIPTSNNNRQCYNSYSTSIAS 293 (324)
Q Consensus 256 ~~~~~~~~~-lg~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (324)
.+-+..|.- -|.-|...|+... |+.+|.+|+....+
T Consensus 366 ~RK~af~~vLAg~~~~~~~~~~~--a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 366 FRKYAFHMVLAGHRYSKAGQKKH--ALRCYKQALQVYEG 402 (414)
T ss_pred hHHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHhCC
Confidence 222233433 3677999999999 99999999987654
No 338
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.77 E-value=0.71 Score=41.40 Aligned_cols=28 Identities=18% Similarity=0.148 Sum_probs=13.7
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8160 200 SGQSLYLLGRCFAAVGKVHDAFLAYRNS 227 (324)
Q Consensus 200 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a 227 (324)
++..|..||......|+++-|..+|+++
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 3444555555555555555555554443
No 339
>KOG0529|consensus
Probab=93.72 E-value=3.5 Score=35.98 Aligned_cols=134 Identities=12% Similarity=0.104 Sum_probs=97.1
Q ss_pred cHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhh--cHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhh
Q psy8160 99 EYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQR--KYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTL 176 (324)
Q Consensus 99 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~ 176 (324)
-.++-+.....++..+|... .+|.....++...+ ++..-+...+++++.+ |.+.+ +|...-.+.......
T Consensus 90 ~ld~eL~~~~~~L~~npksY----~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D--~RNfh--~W~YRRfV~~~~~~~ 161 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSY----GAWHHRKWVLQKNPHSDWNTELQLCEKALKQD--PRNFH--AWHYRRFVVEQAERS 161 (421)
T ss_pred hhHHHHHHHHHHHHhCchhH----HHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC--ccccc--chHHHHHHHHHHhcc
Confidence 45666777788888888876 78889988888775 4677888999999999 87766 555555555433222
Q ss_pred cccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHH------cCC------HHHHHHHHHHHHccCCCCHHHHHHhHH
Q psy8160 177 GEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAA------VGK------VHDAFLAYRNSVEKSEGNADTWCSIGN 243 (324)
Q Consensus 177 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~------~~~------~~~A~~~~~~al~~~p~~~~~~~~lg~ 243 (324)
++ ...+=+.+..+++..++.|..+|.....+... .|+ ...=++.-..|+-.+|++..+|+..-.
T Consensus 162 ~~---~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rW 237 (421)
T KOG0529|consen 162 RN---LEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRW 237 (421)
T ss_pred cc---cchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHH
Confidence 21 35667889999999999999999988766652 231 234566677888899999988876433
No 340
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.69 E-value=0.16 Score=28.00 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHh
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHLTLCL 78 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~~~al 78 (324)
++|..||.+....++|++|+..|++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL 28 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKAL 28 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 466777777777777777777777655
No 341
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.63 E-value=1.4 Score=32.72 Aligned_cols=78 Identities=13% Similarity=0.057 Sum_probs=49.5
Q ss_pred HHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHh
Q psy8160 57 LGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQ 135 (324)
Q Consensus 57 lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~ 135 (324)
+...-...++.+++...+...- .-|........-|.++...|++.+|+..++.+....+..+ -..-.++.|+...
T Consensus 16 ~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p----~~kAL~A~CL~al 91 (153)
T TIGR02561 16 VLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP----YGKALLALCLNAK 91 (153)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch----HHHHHHHHHHHhc
Confidence 3333444667777777776555 6777777777777777777777777777776665544333 2333456666666
Q ss_pred hcH
Q psy8160 136 RKY 138 (324)
Q Consensus 136 ~~~ 138 (324)
||.
T Consensus 92 ~Dp 94 (153)
T TIGR02561 92 GDA 94 (153)
T ss_pred CCh
Confidence 654
No 342
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=93.58 E-value=1.2 Score=39.54 Aligned_cols=128 Identities=9% Similarity=0.066 Sum_probs=83.9
Q ss_pred HHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHH
Q psy8160 62 KVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKT 140 (324)
Q Consensus 62 ~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 140 (324)
...||.-.|-.....++ ..|..+....+.+.++...|+|+.|.....-+=....... ....-+-...+.+|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~----~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTD----STLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCc----hHHHHHHHhhhchhhHHH
Confidence 35688888888888888 8888888888889999999999999886654422211111 223333445567889999
Q ss_pred HHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHH
Q psy8160 141 AKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSL 204 (324)
Q Consensus 141 A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 204 (324)
|...-.-.+... -.. .++..-.+-...+ .+-++++..++++.+.++|.....|
T Consensus 376 a~s~a~~~l~~e--ie~--~ei~~iaa~sa~~-------l~~~d~~~~~wk~~~~~~~~~~~g~ 428 (831)
T PRK15180 376 ALSTAEMMLSNE--IED--EEVLTVAAGSADA-------LQLFDKSYHYWKRVLLLNPETQSGW 428 (831)
T ss_pred HHHHHHHHhccc--cCC--hhheeeecccHHH-------HhHHHHHHHHHHHHhccCChhcccc
Confidence 988877766543 222 1122222222211 4478889999999998887655433
No 343
>KOG3783|consensus
Probab=93.54 E-value=5.6 Score=36.03 Aligned_cols=223 Identities=14% Similarity=0.052 Sum_probs=130.1
Q ss_pred HHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy8160 70 ALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQL 148 (324)
Q Consensus 70 A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 148 (324)
..+.+.... .-|.++.+....+.++...|+.+.|+..++..+. +.-.....-.++.+|.++..+.+|..|-..+...
T Consensus 252 ~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 252 CEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 333444444 5788888888899999999998888888887775 1111122346778899999999999999999988
Q ss_pred HhcCCCCCchhhHHHHHHHHHHHhhhhhcc-cchhHHHHHHHHHHH---hhh----CCccH-------------------
Q psy8160 149 LKEDDLPVHLKADICRQLGWMYHCIDTLGE-KSHRETLAIHCLQKS---IEA----DPKSG------------------- 201 (324)
Q Consensus 149 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~A~~~~~~a---l~~----~~~~~------------------- 201 (324)
.+.++ ..++.--+..|.|+.+....-. ..++-+.|-.+++.. +.. .|-+.
T Consensus 330 ~desd---WS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~ 406 (546)
T KOG3783|consen 330 RDESD---WSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASI 406 (546)
T ss_pred Hhhhh---hhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccc
Confidence 77652 1123233334445533111000 011223232222222 111 11111
Q ss_pred -H--HHHHHHHHHHHc--CCHHHHHHHHHHHHc---c-CCCCHH-HHHHhHHHHhhcCCCHHHHHHHH------------
Q psy8160 202 -Q--SLYLLGRCFAAV--GKVHDAFLAYRNSVE---K-SEGNAD-TWCSIGNKDFSNNSNREDYHQAL------------ 259 (324)
Q Consensus 202 -~--~~~~lg~~~~~~--~~~~~A~~~~~~al~---~-~p~~~~-~~~~lg~~~~~~~~~~~~A~~~~------------ 259 (324)
. .++.+...+..- ...++.. -++..+. . ++++.. -+..+|.++..+|+ ...|..+|
T Consensus 407 ~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~-~~~a~~~f~i~~~~e~~~~~ 484 (546)
T KOG3783|consen 407 LLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGD-SEVAPKCFKIQVEKESKRTE 484 (546)
T ss_pred cccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhhcc
Confidence 1 123333333221 1122222 1122221 1 232222 34567999999999 99999998
Q ss_pred ------HHHHhhHHHHHHcCC-CCcchHHHHHHHhhhcCCChhhhhhchh
Q psy8160 260 ------NKYRDLGDFLVINNI-PTSNNNRQCYNSYSTSIASCKHINNNKD 302 (324)
Q Consensus 260 ------~~~~~lg~~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l~ 302 (324)
-+++.+|.+|...+. ..+ +..++.+|-+...+ -...+++.
T Consensus 485 d~w~~PfA~YElA~l~~~~~g~~~e--~~~~L~kAr~~~~d-Y~lenRLh 531 (546)
T KOG3783|consen 485 DLWAVPFALYELALLYWDLGGGLKE--ARALLLKAREYASD-YELENRLH 531 (546)
T ss_pred ccccccHHHHHHHHHHHhcccChHH--HHHHHHHHHhhccc-cchhhHHH
Confidence 688999999999998 889 99999999876543 33444443
No 344
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=93.48 E-value=0.26 Score=26.74 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHH--HHh-cCCC
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHLT--LCL-IDAS 82 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~~--~al-~~~~ 82 (324)
+.++.+|..+..+|++++|++.|+ -+. .+|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 357888889999999999999944 544 5553
No 345
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.45 E-value=1.2 Score=34.99 Aligned_cols=75 Identities=12% Similarity=0.168 Sum_probs=48.8
Q ss_pred hcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhh
Q psy8160 96 VNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCID 174 (324)
Q Consensus 96 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~ 174 (324)
.+-.-++|...|-++ ........+++.+.+|..|. ..+.++++..+.++++.....+.+.++++..++.+++...
T Consensus 118 sr~~d~~A~~~fL~~---E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~ 192 (203)
T PF11207_consen 118 SRFGDQEALRRFLQL---EGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLK 192 (203)
T ss_pred hccCcHHHHHHHHHH---cCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 333345555544333 33333445688888887765 6678889999999888764332455778888888886644
No 346
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.38 E-value=5.4 Score=35.41 Aligned_cols=70 Identities=17% Similarity=0.179 Sum_probs=51.4
Q ss_pred HHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHH
Q psy8160 36 TFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCL 111 (324)
Q Consensus 36 ~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 111 (324)
.|++++.--| ..+++|+.....+...+|-+.|+...++.+ -.|+ ....++..+....+-++...+|+++.
T Consensus 290 ~~~q~~~y~~---~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~ 360 (660)
T COG5107 290 IHNQILDYFY---YAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCT 360 (660)
T ss_pred HHHHHHHHhh---hhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHH
Confidence 4556665543 466788888777888888888988888877 5555 55667888888888888777777775
No 347
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=93.23 E-value=4.3 Score=33.76 Aligned_cols=54 Identities=11% Similarity=-0.043 Sum_probs=30.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHcc------CCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 205 YLLGRCFAAVGKVHDAFLAYRNSVEK------SEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 205 ~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
+.+...+...|+|.+|+....-.+.. .|.-.+.+..-..+|....+ ..++...+
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irn-v~KskaSL 188 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRN-VSKSKASL 188 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHh-hhhhhhHH
Confidence 34566777778888877776555431 23334455555556665555 55554444
No 348
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.20 E-value=0.15 Score=25.26 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYR 225 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~ 225 (324)
.+.+.+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356677788888888888777664
No 349
>KOG2422|consensus
Probab=93.03 E-value=2.6 Score=38.42 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLL 149 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al 149 (324)
.+.+.+++.+...+|+.+.|.+..++++
T Consensus 284 vdsLLqva~~~r~qgD~e~aadLieR~L 311 (665)
T KOG2422|consen 284 VDSLLQVADIFRFQGDREMAADLIERGL 311 (665)
T ss_pred hhHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 4788899999999999988888777765
No 350
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.00 E-value=0.95 Score=41.13 Aligned_cols=114 Identities=14% Similarity=0.079 Sum_probs=80.7
Q ss_pred HHHHHHHHhhhCCccHHHHHH--HHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH----
Q psy8160 186 AIHCLQKSIEADPKSGQSLYL--LGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL---- 259 (324)
Q Consensus 186 A~~~~~~al~~~~~~~~~~~~--lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~---- 259 (324)
++..+...+..+|.++..+.. +...+...++...+......++..+|++..+..++|......|. ...++..+
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~-~~~~~~~~~~~a 128 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGL-QFLALADISEIA 128 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhh-HHHHHHHHHHHH
Confidence 555555556677777765332 46666667777778888888888888888888888887777776 55554443
Q ss_pred --------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchh
Q psy8160 260 --------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKD 302 (324)
Q Consensus 260 --------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 302 (324)
..++.+|......++..+ +....+++.+..|.++++...+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~l~~~~d~~p~~~~~~~~~~ 183 (620)
T COG3914 129 EWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAE--AELALERAVDLLPKYPRVLGALM 183 (620)
T ss_pred HhcCcchHHHHhhHHHHHHHHHHHHHhccHHH--HHHHHHHHHHhhhhhhhhHhHHH
Confidence 222336777888888888 99999999999999877655543
No 351
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.99 E-value=6.8 Score=35.42 Aligned_cols=183 Identities=13% Similarity=0.039 Sum_probs=114.5
Q ss_pred HHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHh
Q psy8160 35 KTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLID 113 (324)
Q Consensus 35 ~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~ 113 (324)
....+++.... +..+++.++.||... ..++-...+++.+ .+-++......++..|.. ++-..+..+|.+++..
T Consensus 87 h~c~~~l~~~e----~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 87 HLCTRVLEYGE----SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHHHHHHhcc----hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHH
Confidence 34455665553 345788999999887 6677778888888 888888888889988887 8899999999999866
Q ss_pred cCCCcc--cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHH
Q psy8160 114 ASPCTF--TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQ 191 (324)
Q Consensus 114 ~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~ 191 (324)
.-+... .--++|..+-. .--.+.+.-+....++-... .. ....+.+. .++-.++. ..++.+|++.+.
T Consensus 161 fI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiqt~l--g~-~~~~Vl~q--dv~~~Ys~----~eN~~eai~Ilk 229 (711)
T COG1747 161 FIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQTKL--GE-GRGSVLMQ--DVYKKYSE----NENWTEAIRILK 229 (711)
T ss_pred hcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHHHhh--cc-chHHHHHH--HHHHHhcc----ccCHHHHHHHHH
Confidence 433221 11234444321 11233444444443333222 11 11223333 22222221 348999999999
Q ss_pred HHhhhCCccHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHccCCCC
Q psy8160 192 KSIEADPKSGQSLYLLGRCFAA--------------------VGKVHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 192 ~al~~~~~~~~~~~~lg~~~~~--------------------~~~~~~A~~~~~~al~~~p~~ 234 (324)
..++.+..+..+.-.+-.-+.. -.++..++.-|++.+..+..+
T Consensus 230 ~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 230 HILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred HHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 9999988776554444333332 467888999999998888776
No 352
>KOG3807|consensus
Probab=92.93 E-value=5.2 Score=33.98 Aligned_cols=161 Identities=9% Similarity=-0.051 Sum_probs=88.2
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc-------
Q psy8160 127 HIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK------- 199 (324)
Q Consensus 127 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~------- 199 (324)
.+-....+..+..+-++.-..+++++ |.. +.++..++.--.. -..+|.+.++++++....
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeIN--~eC--A~AyvLLAEEEa~---------Ti~~AE~l~k~ALka~e~~yr~sqq 255 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEIN--NEC--ATAYVLLAEEEAT---------TIVDAERLFKQALKAGETIYRQSQQ 255 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhcC--chh--hhHHHhhhhhhhh---------hHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 33444456667777777888888888 665 4455554432211 344555666655543111
Q ss_pred ----------------cH--HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH--HHHHHhHHHHhhcCCCHH------
Q psy8160 200 ----------------SG--QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA--DTWCSIGNKDFSNNSNRE------ 253 (324)
Q Consensus 200 ----------------~~--~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~~~~~~------ 253 (324)
+. .+-..|+.|..++|+..+|++.++...+..|-.. ..+-++-..+....- |.
T Consensus 256 ~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QA-YADvqavL 334 (556)
T KOG3807|consen 256 CQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQA-YADVQAVL 334 (556)
T ss_pred HhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 11 1234689999999999999999999888777432 122333333333333 33
Q ss_pred ----------HHHHHH-HHHHhh--------HHHHHHcCC-CCcchHHHHHHHhhhcCCChhhhhhch
Q psy8160 254 ----------DYHQAL-NKYRDL--------GDFLVINNI-PTSNNNRQCYNSYSTSIASCKHINNNK 301 (324)
Q Consensus 254 ----------~A~~~~-~~~~~l--------g~~~~~~~~-~~~~~A~~~~~~al~~~p~~~~~~~~l 301 (324)
.|--+| .++... ...-.+.|- -.+.+|++...+|++.+|.-|...-.+
T Consensus 335 akYDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVPkYLLE~ 402 (556)
T KOG3807|consen 335 AKYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHVPKYLLEM 402 (556)
T ss_pred HhhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCCcHHHHHH
Confidence 333333 111110 011111221 111248899999999999877654433
No 353
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.93 E-value=0.18 Score=25.01 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhccHHHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLT 75 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~ 75 (324)
+++.+|..+..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 56677777777777777777664
No 354
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.84 E-value=6.6 Score=34.90 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=30.7
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRN 226 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 226 (324)
.|++.++..+-.-..+.+| ++.++..+|.|.....+|++|+.++..
T Consensus 475 qgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred cccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3466666666666666666 666677777777777777777766644
No 355
>KOG1310|consensus
Probab=92.67 E-value=0.54 Score=42.14 Aligned_cols=77 Identities=9% Similarity=-0.071 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHc---CCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHH
Q psy8160 182 RETLAIHCLQKSIEADPKSGQSLYLLGRCFAAV---GKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQA 258 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~ 258 (324)
....|+..|.+++...|.....+.+.+.+++.. |+--.|+.-+..|++++|....+|+.|+.++..++. +.+|+++
T Consensus 389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r-~~eal~~ 467 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTR-YLEALSC 467 (758)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhh-HHHhhhh
Confidence 566799999999999999999999998888876 455568888899999999999999999999999999 9999887
Q ss_pred H
Q psy8160 259 L 259 (324)
Q Consensus 259 ~ 259 (324)
.
T Consensus 468 ~ 468 (758)
T KOG1310|consen 468 H 468 (758)
T ss_pred H
Confidence 6
No 356
>KOG0890|consensus
Probab=92.48 E-value=9.4 Score=40.98 Aligned_cols=35 Identities=3% Similarity=-0.140 Sum_probs=25.6
Q ss_pred HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhh
Q psy8160 260 NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKH 296 (324)
Q Consensus 260 ~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 296 (324)
++|...+.+-+..|+++. |-.+.-+|.+..+....
T Consensus 1671 e~wLqsAriaR~aG~~q~--A~nall~A~e~r~~~i~ 1705 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQR--AQNALLNAKESRLPEIV 1705 (2382)
T ss_pred HHHHHHHHHHHhcccHHH--HHHHHHhhhhcccchHH
Confidence 677777777777888888 87777777776655443
No 357
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.46 E-value=2.4 Score=35.33 Aligned_cols=93 Identities=11% Similarity=0.066 Sum_probs=71.1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcch
Q psy8160 200 SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNN 279 (324)
Q Consensus 200 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~ 279 (324)
...++..++..+...|+++.++..+++.+..+|.+-..|..+-..|...|. ...|+..|.-...+ .-...|---.++
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~-~~~ai~~y~~l~~~--~~edlgi~P~~~ 228 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGR-QSAAIRAYRQLKKT--LAEELGIDPAPE 228 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC-chHHHHHHHHHHHH--hhhhcCCCccHH
Confidence 346778889999999999999999999999999999999999999999999 99999988222222 223334211223
Q ss_pred HHHHHHHhhhcCCChh
Q psy8160 280 NRQCYNSYSTSIASCK 295 (324)
Q Consensus 280 A~~~~~~al~~~p~~~ 295 (324)
+...|.+++...|.+.
T Consensus 229 ~~~~y~~~~~~~~~~~ 244 (280)
T COG3629 229 LRALYEEILRQDPLDN 244 (280)
T ss_pred HHHHHHHHhccccccc
Confidence 7778888877666543
No 358
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=92.14 E-value=0.67 Score=40.35 Aligned_cols=55 Identities=9% Similarity=-0.050 Sum_probs=51.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 204 LYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 204 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
--.|..||..+++.+-|+....+.+..+|.+...+...+.|+..+.+ |.+|-+.+
T Consensus 231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeR-y~eAarSa 285 (569)
T PF15015_consen 231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLER-YSEAARSA 285 (569)
T ss_pred HHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34688999999999999999999999999999999999999999999 99998776
No 359
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.08 E-value=0.92 Score=29.49 Aligned_cols=50 Identities=14% Similarity=0.212 Sum_probs=27.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHH---HHhhcCCCHHHHHH
Q psy8160 207 LGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN---KDFSNNSNREDYHQ 257 (324)
Q Consensus 207 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~---~~~~~~~~~~~A~~ 257 (324)
-|.-++...+.++|+..++++++..++.++.|..+|- +|...|+ |.++++
T Consensus 12 ~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gk-yr~~L~ 64 (80)
T PF10579_consen 12 KGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGK-YREMLA 64 (80)
T ss_pred HHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3444445566666666666666666666555544443 3445555 555544
No 360
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.99 E-value=0.51 Score=32.19 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=42.0
Q ss_pred chhHHHHHHHHHHHhhhCCc---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q psy8160 180 SHRETLAIHCLQKSIEADPK---------SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~---------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 234 (324)
.+++..|++.+.+....... ...++..+|.++...|++++|+..+++++.+....
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 44888887777777654221 13567889999999999999999999999876543
No 361
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=91.92 E-value=1.5 Score=39.04 Aligned_cols=128 Identities=10% Similarity=0.033 Sum_probs=87.0
Q ss_pred cccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhh
Q psy8160 97 NNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTL 176 (324)
Q Consensus 97 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~ 176 (324)
-|+...|-.-...++...|..+ ......+.+...+|+|+.|...+..+-..-...+. +...+-+.. .
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p----~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~----~~~~~~r~~-----~ 368 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDP----VLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDS----TLRCRLRSL-----H 368 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCc----hhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCch----HHHHHHHhh-----h
Confidence 3677777777777777766665 44555688899999999998877654333211111 222222222 2
Q ss_pred cccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q psy8160 177 GEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWC 239 (324)
Q Consensus 177 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 239 (324)
| .+++++|...-.-.+...-.++++..--+-.....|-+++|...+.+.+.++|.....|.
T Consensus 369 ~--l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v 429 (831)
T PRK15180 369 G--LARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWV 429 (831)
T ss_pred c--hhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccce
Confidence 2 559999999988888777777777665556666778899999999999999986644443
No 362
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=91.80 E-value=1.4 Score=36.33 Aligned_cols=61 Identities=16% Similarity=0.158 Sum_probs=52.6
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCS 240 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 240 (324)
.++++.|..+.++.+.++|.++.-+.-.|.+|.+.|.+.-|+..++..++..|+.+.+-.-
T Consensus 194 e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~i 254 (269)
T COG2912 194 ELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMI 254 (269)
T ss_pred hhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHH
Confidence 3378889999999999999999888889999999999999999999989999988776443
No 363
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.62 E-value=0.96 Score=37.61 Aligned_cols=57 Identities=14% Similarity=0.089 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHH
Q psy8160 54 HLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLC 110 (324)
Q Consensus 54 ~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 110 (324)
+..++..+...++++.+++.+++.+ .+|.+...+..+-..|...|+...|+..|++.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 3444444555555555555555555 55555555555555555555555555544444
No 364
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=91.18 E-value=0.6 Score=24.04 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHccCCCCHHHHHHhH
Q psy8160 216 KVHDAFLAYRNSVEKSEGNADTWCSIG 242 (324)
Q Consensus 216 ~~~~A~~~~~~al~~~p~~~~~~~~lg 242 (324)
+.+.|...|++++...|.++..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 445555555555555555555555544
No 365
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=91.06 E-value=6.7 Score=35.98 Aligned_cols=122 Identities=10% Similarity=0.031 Sum_probs=84.6
Q ss_pred HHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH-H
Q psy8160 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL-C 110 (324)
Q Consensus 33 A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~-~ 110 (324)
++..+...+.++|..+.-.-..+ +...+...++...+.-.+..++ .+|.++.....++......|....+...+.. +
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a 128 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIA 128 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44555555555655332211222 5667778888888899999999 9999999999998888877776666665555 5
Q ss_pred HHhcCCCccc--HHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCc
Q psy8160 111 LIDASPCTFT--KLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVH 157 (324)
Q Consensus 111 l~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 157 (324)
....|.+... ....+++++.....+++..++.....++.... |..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~--p~~ 175 (620)
T COG3914 129 EWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLL--PKY 175 (620)
T ss_pred HhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--hhh
Confidence 5555555421 12234457888888899999988888888887 665
No 366
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=90.84 E-value=7.9 Score=34.08 Aligned_cols=53 Identities=15% Similarity=0.029 Sum_probs=26.1
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYE 146 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 146 (324)
+..+|...++.+-|+.+--+.+..+|... .-+..-|-|+..+.+|.+|-..+.
T Consensus 234 lv~CYL~~rkpdlALnh~hrsI~lnP~~f----rnHLrqAavfR~LeRy~eAarSam 286 (569)
T PF15015_consen 234 LVTCYLRMRKPDLALNHSHRSINLNPSYF----RNHLRQAAVFRRLERYSEAARSAM 286 (569)
T ss_pred HHHhhhhcCCCchHHHHHhhhhhcCcchh----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555554443 233334455555555555544433
No 367
>KOG2581|consensus
Probab=90.65 E-value=11 Score=33.02 Aligned_cols=136 Identities=20% Similarity=0.141 Sum_probs=87.5
Q ss_pred HHHhcccHHHHHHHHHHHHHhcCCCc-----ccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCC--CchhhHHHHH
Q psy8160 93 MFKVNNEYDSALKHLTLCLIDASPCT-----FTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLP--VHLKADICRQ 165 (324)
Q Consensus 93 ~~~~~~~~~~A~~~~~~~l~~~~~~~-----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~ 165 (324)
.+..+.++++|.++-+..+....... ...+.+|+.+...|...|+...-...+...+...... ....+.....
T Consensus 135 fl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~ 214 (493)
T KOG2581|consen 135 FLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINL 214 (493)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHH
Confidence 33456788888887777654311111 1224567888888888888666555555544432212 1122445555
Q ss_pred HHHHHHhhhhhcccchhHHHHHHHHHHHhh--hCC--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q psy8160 166 LGWMYHCIDTLGEKSHRETLAIHCLQKSIE--ADP--KSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA 235 (324)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 235 (324)
+-+.|.. .+.+++|.....++.- ... .-+..+|.+|.+..-+++|..|.+++..|+...|.+.
T Consensus 215 LLr~yL~-------n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 215 LLRNYLH-------NKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHhh-------hHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 5555533 4478888888777641 111 2236678899999999999999999999999999863
No 368
>KOG4279|consensus
Probab=90.24 E-value=1.5 Score=41.25 Aligned_cols=161 Identities=12% Similarity=0.087 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh----hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK----ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD 197 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 197 (324)
+++..++-..|....+|+.-+...+.+-.+ |+... ..+.+..+.+..+.+. -|+-++|+...-.+++..
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr----~GDRakAL~~~l~lve~e 273 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNR----PGDRAKALNTVLPLVEKE 273 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCC----CccHHHHHHHHHHHHHhc
Confidence 466667777788888888777766554433 32211 1122233333333333 448888999988888765
Q ss_pred -CccHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCC----------------
Q psy8160 198 -PKSGQSLYLLGRCFAAV---------GKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSN---------------- 251 (324)
Q Consensus 198 -~~~~~~~~~lg~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~---------------- 251 (324)
|..++.++.-|++|-.+ +..+.|++||++|.+..|... .-.+++.++...|+.
T Consensus 274 g~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~-sGIN~atLL~aaG~~Fens~Elq~IgmkLn~ 352 (1226)
T KOG4279|consen 274 GPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY-SGINLATLLRAAGEHFENSLELQQIGMKLNS 352 (1226)
T ss_pred CCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh-ccccHHHHHHHhhhhccchHHHHHHHHHHHH
Confidence 56678888888888765 556789999999999998642 112333333333331
Q ss_pred -------HHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCC
Q psy8160 252 -------REDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIAS 293 (324)
Q Consensus 252 -------~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (324)
.++-..++++-+.+|.. .-.+++.+ |+..-++..++.|-
T Consensus 353 LlgrKG~leklq~YWdV~~y~~as-VLAnd~~k--aiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 353 LLGRKGALEKLQEYWDVATYFEAS-VLANDYQK--AIQAAEMMFKLKPP 398 (1226)
T ss_pred HhhccchHHHHHHHHhHHHhhhhh-hhccCHHH--HHHHHHHHhccCCc
Confidence 32222222222222211 11357778 88888888887764
No 369
>KOG1839|consensus
Probab=89.82 E-value=7.7 Score=39.03 Aligned_cols=123 Identities=15% Similarity=0.017 Sum_probs=87.1
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-c--------CCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHh----cCC
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-I--------DASPCTFTKLEGLMFKVNNEYDSALKHLTLCLID----ASP 116 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----~~~ 116 (324)
....+..++.++...+++++|+..-+++. + .|+....+..++......+....|+..+.++... .++
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge 1051 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGE 1051 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCC
Confidence 45678999999999999999999888876 3 2444555666787777888888888888887543 122
Q ss_pred CcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC---CCchh-hHHHHHHHHHHHh
Q psy8160 117 CTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDL---PVHLK-ADICRQLGWMYHC 172 (324)
Q Consensus 117 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~-~~~~~~l~~~~~~ 172 (324)
.......+..+++.++...++++.|+.+.+.|++.... |...+ +..+..++.++-.
T Consensus 1052 ~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s 1111 (1236)
T KOG1839|consen 1052 DHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFES 1111 (1236)
T ss_pred CCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhh
Confidence 22233456788899999999999999999999876421 22222 3455555555533
No 370
>KOG2581|consensus
Probab=89.33 E-value=14 Score=32.36 Aligned_cols=134 Identities=13% Similarity=0.032 Sum_probs=83.6
Q ss_pred HHHhccHHHHHHHHHHHh--cCCCCch--------hhHHHHHHHHhcccHHHHHHHHHHHHHhcCC--CcccHHHHHHHH
Q psy8160 61 FKVNNEYDSALKHLTLCL--IDASPCT--------FTKLEGLMFKVNNEYDSALKHLTLCLIDASP--CTFTKLEVRFHI 128 (324)
Q Consensus 61 ~~~~~~~~~A~~~~~~al--~~~~~~~--------~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~~~~~l 128 (324)
.+.+.++++|.++-+..+ +...+.+ .+..+..++...|+...-...+...+....- +..+++.+...+
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~L 215 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLL 215 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHH
Confidence 345688999988887766 3222222 2333566666677765555555544433222 222445566667
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG 201 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 201 (324)
-.+|...+.|+.|-....++.--....++..+.-++.+|.+..- ..+|..|.+++..|+...|.+.
T Consensus 216 Lr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkai-------qldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 216 LRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAI-------QLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHh-------hcchhHHHHHHHHHHHhCcchh
Confidence 77888888888887776655421111333346666677777644 4489999999999999999754
No 371
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=89.32 E-value=1.9 Score=35.54 Aligned_cols=68 Identities=6% Similarity=-0.165 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHH
Q psy8160 203 SLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQ 282 (324)
Q Consensus 203 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~ 282 (324)
..-++=..+...++++.|..+.++.+.++|.++.-+.-.|.+|.+.|. +.- |+.
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c------------------------~~v--Al~ 236 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGC------------------------YHV--ALE 236 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCC------------------------chh--hHH
Confidence 344566778888999999999999999999999999999999998888 444 666
Q ss_pred HHHHhhhcCCChhh
Q psy8160 283 CYNSYSTSIASCKH 296 (324)
Q Consensus 283 ~~~~al~~~p~~~~ 296 (324)
.++..++.-|+++.
T Consensus 237 dl~~~~~~~P~~~~ 250 (269)
T COG2912 237 DLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHHHHhCCCchH
Confidence 66666666666654
No 372
>KOG0687|consensus
Probab=89.10 E-value=13 Score=31.59 Aligned_cols=110 Identities=13% Similarity=0.027 Sum_probs=69.8
Q ss_pred cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCch-h-hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC
Q psy8160 120 TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHL-K-ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD 197 (324)
Q Consensus 120 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~-~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 197 (324)
...+++.+.|..|.+.|+.+.|.+.+++.....-.-... . .-...++|..|......+ ...+.|-..+++.-.-+
T Consensus 102 ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~---~~iekak~liE~GgDWe 178 (393)
T KOG0687|consen 102 EVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVT---ESIEKAKSLIEEGGDWE 178 (393)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHH---HHHHHHHHHHHhCCChh
Confidence 445789999999999999999999998887654111110 0 225566777774432222 24455555555543333
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q psy8160 198 PKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG 233 (324)
Q Consensus 198 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 233 (324)
..| ..-..-|.-.+...++.+|-..|-.++.....
T Consensus 179 RrN-RlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 179 RRN-RLKVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred hhh-hHHHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 222 23344577777888999999999888765543
No 373
>KOG1463|consensus
Probab=88.64 E-value=15 Score=31.53 Aligned_cols=162 Identities=15% Similarity=0.090 Sum_probs=105.7
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC---CCCCchhhHHHH
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDA--SPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED---DLPVHLKADICR 164 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~~~ 164 (324)
+..+|...++|.+|+......+..- -++...-.+++..-...|+...+..+|...+..+-... =.|+...+..-.
T Consensus 134 li~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDL 213 (411)
T KOG1463|consen 134 LIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDL 213 (411)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHH
Confidence 5778888999999999888776541 12222223556666788899999999888887764321 024444454545
Q ss_pred HHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC---ccHH---HHHHHHHHHHHcCCHHH--HHHHHHHHHccCCCCHH
Q psy8160 165 QLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP---KSGQ---SLYLLGRCFAAVGKVHD--AFLAYRNSVEKSEGNAD 236 (324)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~---~~~~---~~~~lg~~~~~~~~~~~--A~~~~~~al~~~p~~~~ 236 (324)
.-|-++.. ..+|.-|..+|-++++-.. .+.. ++-.+-.|-...+..++ ++-.-..+++......+
T Consensus 214 qSGIlha~-------ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~ 286 (411)
T KOG1463|consen 214 QSGILHAA-------EKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDID 286 (411)
T ss_pred hccceeec-------ccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchH
Confidence 55555533 2389999999999987532 1222 33344445555566554 55555667777777788
Q ss_pred HHHHhHHHHhh--cCCCHHHHHHHH
Q psy8160 237 TWCSIGNKDFS--NNSNREDYHQAL 259 (324)
Q Consensus 237 ~~~~lg~~~~~--~~~~~~~A~~~~ 259 (324)
+...++..+.. +.+ |+.|+..|
T Consensus 287 AmkavAeA~~nRSLkd-F~~AL~~y 310 (411)
T KOG1463|consen 287 AMKAVAEAFGNRSLKD-FEKALADY 310 (411)
T ss_pred HHHHHHHHhcCCcHHH-HHHHHHHh
Confidence 88888888754 457 88898888
No 374
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.43 E-value=1.4 Score=25.11 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhcC
Q psy8160 126 FHIAHLHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 126 ~~la~~~~~~~~~~~A~~~~~~al~~~ 152 (324)
+.+|..|...|+.+.|.+.+++++...
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 456777777777777777777777543
No 375
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=88.22 E-value=5.4 Score=26.04 Aligned_cols=59 Identities=15% Similarity=0.153 Sum_probs=40.9
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhh
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIE 195 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 195 (324)
|.-+...++..+|+..+++++... ++. ..-+..+|++.......| ++.+.+.+-..-++
T Consensus 13 GlkLY~~~~~~~Al~~W~~aL~k~--~~~--~~rf~~lG~l~qA~~e~G----kyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 13 GLKLYHQNETQQALQKWRKALEKI--TDR--EDRFRVLGYLIQAHMEWG----KYREMLAFALQQLE 71 (80)
T ss_pred HHHHhccchHHHHHHHHHHHHhhc--CCh--HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 444557788899999999999877 554 337777777776555555 77777777655443
No 376
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=88.01 E-value=1.6 Score=38.49 Aligned_cols=60 Identities=17% Similarity=0.122 Sum_probs=44.3
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCC-----cccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHh
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDASPC-----TFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLK 150 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 150 (324)
+.++....|||..|++..+.. +.+... +.....+++.+|.+|..+++|..|+..|..++.
T Consensus 128 LlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888889999999976654 111111 112346789999999999999999999998864
No 377
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=87.94 E-value=14 Score=30.61 Aligned_cols=141 Identities=12% Similarity=0.049 Sum_probs=68.0
Q ss_pred cchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHH---HHHHHHhcCCCcccHHHHH
Q psy8160 49 RANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKH---LTLCLIDASPCTFTKLEVR 125 (324)
Q Consensus 49 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~---~~~~l~~~~~~~~~~~~~~ 125 (324)
..++.|..+|..+++.+++.+|..+|- .|+..++... .........+.. .+.+
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl---------------------~~~~~~~~~~~~ll~~~~~~~~~~e---~dlf 143 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL---------------------LGTDPSAFAYVMLLEEWSTKGYPSE---ADLF 143 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH---------------------TS-HHHHHHHHHHHHHHHHHTSS-----HHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH---------------------hcCChhHHHHHHHHHHHHHhcCCcc---hhHH
Confidence 356789999999999999999998886 2222222221 111111222211 1333
Q ss_pred HHH-HHHHHHhhcHHHHHHHHHHHHhc----CCCCCc-------hhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHH
Q psy8160 126 FHI-AHLHEVQRKYKTAKDSYEQLLKE----DDLPVH-------LKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKS 193 (324)
Q Consensus 126 ~~l-a~~~~~~~~~~~A~~~~~~al~~----~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a 193 (324)
... -..|...++...|...+..-++. . |.. .....+.+..++....-..+ ....+..-.+.|+..
T Consensus 144 i~RaVL~yL~l~n~~~A~~~~~~f~~~~~~~~--p~~~~~~~~~~~~~PllnF~~lLl~t~e~~-~~~~F~~L~~~Y~~~ 220 (260)
T PF04190_consen 144 IARAVLQYLCLGNLRDANELFDTFTSKLIESH--PKLENSDIEYPPSYPLLNFLQLLLLTCERD-NLPLFKKLCEKYKPS 220 (260)
T ss_dssp HHHHHHHHHHTTBHHHHHHHHHHHHHHHHHH-----EEEEEEEEESS-HHHHHHHHHHHHHHHT--HHHHHHHHHHTHH-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHhccC--cchhccccCCCCCCchHHHHHHHHHHHhcC-cHHHHHHHHHHhCcc
Confidence 333 34456678888888776665544 2 210 00113334443332211111 122344455556666
Q ss_pred hhhCCccHHHHHHHHHHHHHcCC
Q psy8160 194 IEADPKSGQSLYLLGRCFAAVGK 216 (324)
Q Consensus 194 l~~~~~~~~~~~~lg~~~~~~~~ 216 (324)
++.+|.-...+-.+|..|+....
T Consensus 221 L~rd~~~~~~L~~IG~~yFgi~~ 243 (260)
T PF04190_consen 221 LKRDPSFKEYLDKIGQLYFGIQP 243 (260)
T ss_dssp --HHHHTHHHHHHHHHHHH---S
T ss_pred ccccHHHHHHHHHHHHHHCCCCC
Confidence 66666667778888888887553
No 378
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.80 E-value=2.3 Score=35.30 Aligned_cols=55 Identities=9% Similarity=0.004 Sum_probs=49.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 204 LYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 204 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
+...+..|...|.+.+|+...++++..+|-+...|..+-.++...|+ --.|++.|
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD-~is~~khy 336 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD-EISAIKHY 336 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc-chhhhhHH
Confidence 34457788999999999999999999999999999999999999999 88888777
No 379
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.65 E-value=1.4 Score=25.09 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=23.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy8160 204 LYLLGRCFAAVGKVHDAFLAYRNSVE 229 (324)
Q Consensus 204 ~~~lg~~~~~~~~~~~A~~~~~~al~ 229 (324)
.+.++..|..+|+.+.|...++.++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 36789999999999999999999985
No 380
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.62 E-value=2.2 Score=35.47 Aligned_cols=54 Identities=15% Similarity=0.029 Sum_probs=33.1
Q ss_pred HHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHH
Q psy8160 57 LGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLC 110 (324)
Q Consensus 57 lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 110 (324)
.+..|...|.+.+|+++.++++ .||-+...+..+-.++...||--++.++|++.
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 3445556666666666666666 66666666666666666666666666655544
No 381
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=87.39 E-value=2.4 Score=35.32 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=28.4
Q ss_pred HHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh
Q psy8160 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL 78 (324)
Q Consensus 33 A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 78 (324)
|..+|.+|..+.|+. ...|..||.++...|+.=.|+=+|-+++
T Consensus 1 A~~~Y~~A~~l~P~~---G~p~nQLAvl~~~~~~~l~avy~y~Rsl 43 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN---GNPYNQLAVLASYQGDDLDAVYYYIRSL 43 (278)
T ss_dssp HHHHHHHHHHH-TTB---SHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCC---CCcccchhhhhccccchHHHHHHHHHHH
Confidence 566777777777653 3457777777777777777777777666
No 382
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=86.52 E-value=6 Score=32.53 Aligned_cols=60 Identities=15% Similarity=0.037 Sum_probs=38.1
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHhcCCCcc--cHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy8160 89 LEGLMFKVNNEYDSALKHLTLCLIDASPCTF--TKLEVRFHIAHLHEVQRKYKTAKDSYEQL 148 (324)
Q Consensus 89 ~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a 148 (324)
.+|..|...|+++.|++.|+.+...-..... ...++...+..|....|+.+..+.+.-++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3677777788888888888877544222222 22356666777777777777666554443
No 383
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=85.98 E-value=1.9 Score=22.03 Aligned_cols=29 Identities=17% Similarity=0.092 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHhhhCCccHHHHHHHHHH
Q psy8160 182 RETLAIHCLQKSIEADPKSGQSLYLLGRC 210 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~~~~~~lg~~ 210 (324)
+.+.|...|++++...|.++..|......
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 67889999999999999999999876543
No 384
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=85.86 E-value=18 Score=29.57 Aligned_cols=171 Identities=9% Similarity=0.070 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHh-cCCCC-chhhHHHHHHHHh-cccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q psy8160 54 HLRLGLMFKVNNEYDSALKHLTLCL-IDASP-CTFTKLEGLMFKV-NNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH 130 (324)
Q Consensus 54 ~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~-~~~~~~la~~~~~-~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~ 130 (324)
+..++.+....++|++.+.++++++ .+|.- ..-..+++..|.. .|....+.+.+............ .....+..
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~---~~~~~~i~ 80 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN---EKQVKLIK 80 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT---HHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch---hHHHHHHH
Confidence 5678889999999999999999999 65433 2334445555543 36666666666555443222210 11111111
Q ss_pred HHHH-----h-hcHHHHHHHHHHHHhcCCCCCchh--hHHHHHHHHHHHhhhhhcc---cchhHHHHHHHHHHHhh----
Q psy8160 131 LHEV-----Q-RKYKTAKDSYEQLLKEDDLPVHLK--ADICRQLGWMYHCIDTLGE---KSHRETLAIHCLQKSIE---- 195 (324)
Q Consensus 131 ~~~~-----~-~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~---~~~~~~~A~~~~~~al~---- 195 (324)
-|.. . .--.+.+......+-.. ..+.+ ...+...|..|+....... ...-.+.|...|++|++
T Consensus 81 ~yk~kie~EL~~~C~eii~lId~~Lip~--~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~ 158 (236)
T PF00244_consen 81 DYKKKIEDELIDICNEIIRLIDKSLIPS--ATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKK 158 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHH--S-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhc
Confidence 1111 0 11122233333322111 11112 2233445666654333321 11234677777777764
Q ss_pred -hCCccHH---HHHHHHHHH-HHcCCHHHHHHHHHHHHc
Q psy8160 196 -ADPKSGQ---SLYLLGRCF-AAVGKVHDAFLAYRNSVE 229 (324)
Q Consensus 196 -~~~~~~~---~~~~lg~~~-~~~~~~~~A~~~~~~al~ 229 (324)
+.|.+|- ...+.+..+ ...|+.++|+...++|+.
T Consensus 159 ~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 159 ELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred ccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3455552 223334333 447888888888777754
No 385
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=85.71 E-value=1.2 Score=39.26 Aligned_cols=62 Identities=16% Similarity=0.105 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCC---------CCHHHHHHhHHHHhhcCCCHHHHHHHH-HHHHhh
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSE---------GNADTWCSIGNKDFSNNSNREDYHQAL-NKYRDL 265 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---------~~~~~~~~lg~~~~~~~~~~~~A~~~~-~~~~~l 265 (324)
.+...|.+++.-.|||..|++..+.. +++. -+..+++.+|-+|+.+++ |.+|++.| .++..+
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrR-Y~DAir~f~~iL~yi 194 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRR-YADAIRTFSQILLYI 194 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 35567788999999999999988653 3332 235578899999999999 99999999 443333
No 386
>KOG1463|consensus
Probab=85.63 E-value=22 Score=30.49 Aligned_cols=176 Identities=16% Similarity=0.187 Sum_probs=112.1
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHh-c----C--CCCchhhHHHHHHHHhcccHHHHHHHHHHHHHh-cC-CCcc-cHHHH
Q psy8160 55 LRLGLMFKVNNEYDSALKHLTLCL-I----D--ASPCTFTKLEGLMFKVNNEYDSALKHLTLCLID-AS-PCTF-TKLEV 124 (324)
Q Consensus 55 ~~lg~~~~~~~~~~~A~~~~~~al-~----~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-~~-~~~~-~~~~~ 124 (324)
.++...|...++|.+|+......+ . | +.-...+......|....+...|...+..+-.. +. -+++ .++.+
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~l 211 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATL 211 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHH
Confidence 467788999999999999887766 2 2 334555666788888888888888877666322 11 1111 12233
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHH
Q psy8160 125 RFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSL 204 (324)
Q Consensus 125 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 204 (324)
-.+=|-.|....+|..|-.+|-++.+-...-+. ...++..+-++..+.-..+ .-+--.++-.-+.+++....+.++.
T Consensus 212 DLqSGIlha~ekDykTafSYFyEAfEgf~s~~~-~v~A~~sLKYMlLcKIMln--~~ddv~~lls~K~~l~y~g~~i~Am 288 (411)
T KOG1463|consen 212 DLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDD-DVKALTSLKYMLLCKIMLN--LPDDVAALLSAKLALKYAGRDIDAM 288 (411)
T ss_pred HHhccceeecccccchHHHHHHHHHccccccCC-cHHHHHHHHHHHHHHHHhc--CHHHHHHHHhhHHHHhccCcchHHH
Confidence 333366677779999999999999876532222 1235555555554422111 1122234444555666666777888
Q ss_pred HHHHHHHHHc--CCHHHHHHHHHHHHccCCC
Q psy8160 205 YLLGRCFAAV--GKVHDAFLAYRNSVEKSEG 233 (324)
Q Consensus 205 ~~lg~~~~~~--~~~~~A~~~~~~al~~~p~ 233 (324)
...+..+... .+|+.|+..|..-+..+|-
T Consensus 289 kavAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 289 KAVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 8888887654 6788999999888877763
No 387
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=85.37 E-value=5.3 Score=32.86 Aligned_cols=75 Identities=15% Similarity=0.108 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHhhhCCcc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------HHHHHHhHHHHhhcC
Q psy8160 182 RETLAIHCLQKSIEADPKS------GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN------ADTWCSIGNKDFSNN 249 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~ 249 (324)
.....+..+.+|.+..... ......+|..|+..|++++|+..|+.+....... ..+...+..|+...|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 3445566677666544322 2456688999999999999999999996544332 334556677777777
Q ss_pred CCHHHHHH
Q psy8160 250 SNREDYHQ 257 (324)
Q Consensus 250 ~~~~~A~~ 257 (324)
+ .++.+.
T Consensus 233 ~-~~~~l~ 239 (247)
T PF11817_consen 233 D-VEDYLT 239 (247)
T ss_pred C-HHHHHH
Confidence 7 666544
No 388
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=84.93 E-value=19 Score=29.15 Aligned_cols=56 Identities=23% Similarity=0.403 Sum_probs=38.1
Q ss_pred HHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhc---ccchhHHHHHHHHHHHhhhCCccH
Q psy8160 145 YEQLLKEDDLPVHLKADICRQLGWMYHCIDTLG---EKSHRETLAIHCLQKSIEADPKSG 201 (324)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~A~~~~~~al~~~~~~~ 201 (324)
+..+...-+.|+.+.+..+...|..+... ..| ...++...|+.++++|+.++|+..
T Consensus 154 ~~~l~~~~dmpd~vrAKl~K~~G~~llr~-~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 154 FLDLTTEWDMPDEVRAKLYKAAGYLLLRN-EKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHhhc-ccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 44444445668877788888999888541 111 113477889999999999998754
No 389
>KOG2114|consensus
Probab=84.87 E-value=39 Score=32.71 Aligned_cols=31 Identities=13% Similarity=0.119 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc
Q psy8160 121 KLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151 (324)
Q Consensus 121 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 151 (324)
..+++...|..++..|++++|...|-+.+..
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 3456666677777777777777777766643
No 390
>KOG0529|consensus
Probab=84.83 E-value=27 Score=30.77 Aligned_cols=101 Identities=10% Similarity=0.063 Sum_probs=77.9
Q ss_pred cHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHc--
Q psy8160 137 KYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAV-- 214 (324)
Q Consensus 137 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~-- 214 (324)
-.++-+.....++..+ |+++. +|..+.|+.... + ..++..-+...+++++.+|.+-.+|...=.+....
T Consensus 90 ~ld~eL~~~~~~L~~n--pksY~--aW~hR~w~L~~~---p--~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~ 160 (421)
T KOG0529|consen 90 LLDEELKYVESALKVN--PKSYG--AWHHRKWVLQKN---P--HSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAER 160 (421)
T ss_pred hhHHHHHHHHHHHHhC--chhHH--HHHHHHHHHHhC---C--CchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhc
Confidence 4566677888888989 98865 999999999652 1 22688889999999999999998887655444433
Q ss_pred --CCHHHHHHHHHHHHccCCCCHHHHHHhHHHHh
Q psy8160 215 --GKVHDAFLAYRNSVEKSEGNADTWCSIGNKDF 246 (324)
Q Consensus 215 --~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 246 (324)
....+=+++..+++.-++.|-.+|.+...+..
T Consensus 161 ~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 161 SRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred ccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 23566788899999999999999988776665
No 391
>KOG3783|consensus
Probab=84.06 E-value=34 Score=31.30 Aligned_cols=57 Identities=14% Similarity=0.127 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHcc---CCCC----HHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 203 SLYLLGRCFAAVGKVHDAFLAYRNSVEK---SEGN----ADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 203 ~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~----~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
-++.+|.++...|+...|..+|..+++. ...+ |-+++.+|.++...+....++...+
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L 514 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALL 514 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHH
Confidence 3567899999999999999999998843 2222 7789999999998876466776554
No 392
>KOG2114|consensus
Probab=83.52 E-value=25 Score=34.00 Aligned_cols=39 Identities=15% Similarity=0.230 Sum_probs=32.3
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh--cCCCCchhhH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL--IDASPCTFTK 88 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~ 88 (324)
-.+++...|..++..|++++|...|-+.| ++|....-.+
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kf 407 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKF 407 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHh
Confidence 35688999999999999999999999999 7777654433
No 393
>KOG2422|consensus
Probab=81.66 E-value=44 Score=30.93 Aligned_cols=158 Identities=14% Similarity=0.138 Sum_probs=89.4
Q ss_pred HHHHHHHHHHhccC-CC--------cccchHHHHHHHHHHHHhccHHHHHHHHHHHh-c---------------------
Q psy8160 31 IKAIKTFQQLLYVD-PS--------YLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-I--------------------- 79 (324)
Q Consensus 31 ~~A~~~~~~~l~~~-p~--------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~--------------------- 79 (324)
++|...|.-+.... |+ .|...+.+..++.++..+||.+.|-....+++ .
T Consensus 255 eqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~ 334 (665)
T KOG2422|consen 255 EQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYI 334 (665)
T ss_pred HHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCccc
Confidence 67777776666543 32 23445678999999999999998888888877 2
Q ss_pred CCCCchhhHHH---HHHHHhcccHHHHHHHHHHHHHhcCC-CcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC---
Q psy8160 80 DASPCTFTKLE---GLMFKVNNEYDSALKHLTLCLIDASP-CTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED--- 152 (324)
Q Consensus 80 ~~~~~~~~~~l---a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--- 152 (324)
.|.|-.++..+ -..+...|-+..|.++++-.+...|. ++. -+.+.+-.......+|.=-++.++..-..+
T Consensus 335 ~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl---~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~ 411 (665)
T KOG2422|consen 335 YPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPL---GILYLIDIYALRAREYQWIIELSNEPENMNKLS 411 (665)
T ss_pred chhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCch---hHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence 22222233222 22334568899999999988888777 332 122333333334444444444444432221
Q ss_pred CCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC
Q psy8160 153 DLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP 198 (324)
Q Consensus 153 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 198 (324)
..|+-. --..+++.|..... ...-+.|...+.+|+...|
T Consensus 412 ~~PN~~---yS~AlA~f~l~~~~----~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 412 QLPNFG---YSLALARFFLRKNE----EDDRQSALNALLQALKHHP 450 (665)
T ss_pred hcCCch---HHHHHHHHHHhcCC----hhhHHHHHHHHHHHHHhCc
Confidence 114321 11233444433111 1135668888888888777
No 394
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=81.01 E-value=41 Score=30.14 Aligned_cols=99 Identities=18% Similarity=0.134 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHH-------HHHHHhcccH-------HHHHHHHHHHHHhcCC--
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLE-------GLMFKVNNEY-------DSALKHLTLCLIDASP-- 116 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~l-------a~~~~~~~~~-------~~A~~~~~~~l~~~~~-- 116 (324)
....||.+++..+||+.|...|+.+..|-.+..++..+ |......+.. +....+++.++.....
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~ 289 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence 35679999999999999999999877554444444332 3323333211 2333344443221111
Q ss_pred ---Cc--ccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc
Q psy8160 117 ---CT--FTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151 (324)
Q Consensus 117 ---~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 151 (324)
.. .....+....+.++...+.+.+|...+-+....
T Consensus 290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 01 111234445566666777777766655555443
No 395
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=79.80 E-value=2.3 Score=34.27 Aligned_cols=33 Identities=12% Similarity=0.091 Sum_probs=24.2
Q ss_pred HHHHhhHHHHH---------HcCCCCcchHHHHHHHhhhcCCCh
Q psy8160 260 NKYRDLGDFLV---------INNIPTSNNNRQCYNSYSTSIASC 294 (324)
Q Consensus 260 ~~~~~lg~~~~---------~~~~~~~~~A~~~~~~al~~~p~~ 294 (324)
..+.-.|..+. ..++... |+.++++|++++|+.
T Consensus 170 Kl~K~~G~~llr~~~g~~~~d~~~l~~--Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 170 KLYKAAGYLLLRNEKGEPIGDAETLQL--ALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHHhhcccCCCccCcccHHH--HHHHHHHHHHhCCCC
Confidence 44555677663 4456678 999999999999863
No 396
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=79.22 E-value=7.2 Score=28.86 Aligned_cols=50 Identities=10% Similarity=-0.098 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCC
Q psy8160 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNS 250 (324)
Q Consensus 201 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 250 (324)
.+.....+...+..|++.-|.+....++..+|++..+....+.++.++|.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 46667778888899999999999999999999999999999998888775
No 397
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=78.47 E-value=6.3 Score=29.16 Aligned_cols=47 Identities=13% Similarity=0.045 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcc
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNN 98 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~ 98 (324)
+.....+.-.+..|++..|.+....++ .+|++..+..+++..+...|
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 345667777788899999999999888 88988888888887776654
No 398
>KOG0276|consensus
Probab=78.19 E-value=20 Score=33.26 Aligned_cols=105 Identities=19% Similarity=0.153 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHH
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQ 202 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 202 (324)
+.+..++..+..+|-.++| ++...-|++ -+.++ .+ .++++.|.....+ .++..
T Consensus 615 ~~rt~va~Fle~~g~~e~A-------L~~s~D~d~-----rFela---l~-------lgrl~iA~~la~e-----~~s~~ 667 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQA-------LELSTDPDQ-----RFELA---LK-------LGRLDIAFDLAVE-----ANSEV 667 (794)
T ss_pred hhhhhHHhHhhhccchHhh-------hhcCCChhh-----hhhhh---hh-------cCcHHHHHHHHHh-----hcchH
Confidence 4566778888888766655 444411322 11111 11 3367777665444 35677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccC--------CCCHHHHHHhHHHHhhcCCCHHHH
Q psy8160 203 SLYLLGRCFAAVGKVHDAFLAYRNSVEKS--------EGNADTWCSIGNKDFSNNSNREDY 255 (324)
Q Consensus 203 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~~A 255 (324)
=|-.||......+++..|.++|.++.... ..+.+....+|....+.|. ..-|
T Consensus 668 Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~N~A 727 (794)
T KOG0276|consen 668 KWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGK-NNLA 727 (794)
T ss_pred HHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcc-cchH
Confidence 79999999999999999999999986542 3445555666666666666 4444
No 399
>KOG1538|consensus
Probab=77.78 E-value=26 Score=32.95 Aligned_cols=47 Identities=15% Similarity=0.110 Sum_probs=33.9
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVE 229 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 229 (324)
.+++.+|...-++.-+. -++.++..|+-+.+..++++|.+.|.+|=+
T Consensus 786 ~~~W~eAFalAe~hPe~---~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr 832 (1081)
T KOG1538|consen 786 TQRWDEAFALAEKHPEF---KDDVYMPYAQWLAENDRFEEAQKAFHKAGR 832 (1081)
T ss_pred cccchHhHhhhhhCccc---cccccchHHHHhhhhhhHHHHHHHHHHhcc
Confidence 44666666655443222 236788889999999999999999988844
No 400
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=77.74 E-value=50 Score=29.21 Aligned_cols=57 Identities=21% Similarity=0.004 Sum_probs=29.9
Q ss_pred HHHHHHHHhccHHHHHHHHHHHh-cCCCCch--hhHH--HHHHHHhcccHHHHHHHHHHHHH
Q psy8160 56 RLGLMFKVNNEYDSALKHLTLCL-IDASPCT--FTKL--EGLMFKVNNEYDSALKHLTLCLI 112 (324)
Q Consensus 56 ~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~--~~~~--la~~~~~~~~~~~A~~~~~~~l~ 112 (324)
..+.-.+..++|..|...|...+ .-|.... .... .|..+...-++++|.+.+++.+.
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44455566677777777776666 3132222 1111 23333445566666666666553
No 401
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=77.60 E-value=50 Score=29.19 Aligned_cols=61 Identities=18% Similarity=0.040 Sum_probs=42.7
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH--HHHHhhcHHHHHHHHHHHHhcC
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH--LHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~--~~~~~~~~~~A~~~~~~al~~~ 152 (324)
.+.-+...++|..|...++.....-++... ...+..+.. .++..-++.+|.+.++..+...
T Consensus 137 ~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~ 199 (379)
T PF09670_consen 137 RAKELFNRYDYGAAARILEELLRRLPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD 199 (379)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 466667889999999999998876333221 234555544 4455678999999999887654
No 402
>KOG1497|consensus
Probab=77.22 E-value=45 Score=28.44 Aligned_cols=99 Identities=13% Similarity=0.183 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCc--------hhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHH
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHLTLCLIDASPC--------TFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLE 123 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~--------~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 123 (324)
.++..||.+|-..++|+.|-..+.-+-.+...- .....+|++|...++..+|..+..++--....... .+
T Consensus 104 ~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~N--e~ 181 (399)
T KOG1497|consen 104 SIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSN--EQ 181 (399)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccC--HH
Confidence 467899999999999999988776332443111 12233699999999999999988887322111111 12
Q ss_pred HHHHH----HHHHHHhhcHHHHHHHHHHHHhcC
Q psy8160 124 VRFHI----AHLHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 124 ~~~~l----a~~~~~~~~~~~A~~~~~~al~~~ 152 (324)
+...+ |.+.-..++|-+|...|.++....
T Consensus 182 Lqie~kvc~ARvlD~krkFlEAAqrYyels~~k 214 (399)
T KOG1497|consen 182 LQIEYKVCYARVLDYKRKFLEAAQRYYELSQRK 214 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 555666788888887777766544
No 403
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=76.68 E-value=48 Score=30.66 Aligned_cols=105 Identities=12% Similarity=0.271 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-----CCCCH
Q psy8160 161 DICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK-----SEGNA 235 (324)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~ 235 (324)
.....+-|+++....+. +|.-|+-.+-..-++.|.. .-..++..|.+|+.. +..+.
T Consensus 258 ~lqq~lLw~lyd~ghl~----~YPmALg~LadLeEi~pt~---------------~r~~~~~l~~~AI~sa~~~Y~n~Hv 318 (618)
T PF05053_consen 258 QLQQDLLWLLYDMGHLA----RYPMALGNLADLEEIDPTP---------------GRPTPLELFNEAISSARTYYNNHHV 318 (618)
T ss_dssp HHHHHHHHHHHHTTTTT----T-HHHHHHHHHHHHHS--T---------------TS--HHHHHHHHHHHHHHHCTT--S
T ss_pred HHHHHHHHHHHhcCchh----hCchhhhhhHhHHhhccCC---------------CCCCHHHHHHHHHHHHHHHhcCCcc
Confidence 34444555555444333 5666666666655555532 223455566666542 34456
Q ss_pred HHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhc
Q psy8160 236 DTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTS 290 (324)
Q Consensus 236 ~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~ 290 (324)
--+..+|..+++.++ +.+|+.+ |..-+.+...-+-..+ =.+.|+..+++
T Consensus 319 YPYty~gg~~yR~~~-~~eA~~~---Wa~aa~Vi~~YnY~re--DeEiYKEfleI 367 (618)
T PF05053_consen 319 YPYTYLGGYYYRHKR-YREALRS---WAEAADVIRKYNYSRE--DEEIYKEFLEI 367 (618)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHH---HHHHHHHHTTSB--GG--GHHHHHHHHHH
T ss_pred ccceehhhHHHHHHH-HHHHHHH---HHHHHHHHHHcccCcc--HHHHHHHHHHH
Confidence 678899999999999 9999876 5555555554443344 44555555443
No 404
>KOG0687|consensus
Probab=76.48 E-value=48 Score=28.38 Aligned_cols=104 Identities=9% Similarity=-0.013 Sum_probs=63.0
Q ss_pred chhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcc--cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCch---
Q psy8160 84 CTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTF--TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHL--- 158 (324)
Q Consensus 84 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~--- 158 (324)
..++...|..|.+.||-+.|++.+.+.......... ...-....+|.+|....-..+.++-.+..++.. .+.-
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~G--gDWeRrN 181 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEG--GDWERRN 181 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC--CChhhhh
Confidence 355666899999999999999999888765433322 112233456777766654445555555555444 2211
Q ss_pred hhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC
Q psy8160 159 KADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP 198 (324)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 198 (324)
.-.++.++-.+- ..++.+|-..|-.++....
T Consensus 182 RlKvY~Gly~ms---------vR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 182 RLKVYQGLYCMS---------VRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred hHHHHHHHHHHH---------HHhHHHHHHHHHHHccccc
Confidence 122444443333 3388899999988876554
No 405
>KOG2062|consensus
Probab=76.27 E-value=75 Score=30.53 Aligned_cols=179 Identities=10% Similarity=0.060 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHH--HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKL--EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH 130 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~ 130 (324)
+-+.+|.+......- +|++.+...-.+......... .|..+..-|+.++|-...++++... ++..+..-.+.+|.
T Consensus 469 Agi~MGl~mlGt~~~-eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dk--dpilR~~Gm~t~al 545 (929)
T KOG2062|consen 469 AGIAMGLLMLGTANQ-EAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDK--DPILRYGGMYTLAL 545 (929)
T ss_pred HHHhhhhHhhCcCcH-HHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCC--chhhhhhhHHHHHH
Confidence 345555555544443 344433322222222222222 3555666677777777777776543 22222344566777
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHH----HH
Q psy8160 131 LHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSL----YL 206 (324)
Q Consensus 131 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----~~ 206 (324)
.|...|+..--...+.-++... .++++..+-..+|.+++. +++.......-..+. .|+.+. ..
T Consensus 546 Ay~GTgnnkair~lLh~aVsD~--nDDVrRaAVialGFVl~~---------dp~~~~s~V~lLses--~N~HVRyGaA~A 612 (929)
T KOG2062|consen 546 AYVGTGNNKAIRRLLHVAVSDV--NDDVRRAAVIALGFVLFR---------DPEQLPSTVSLLSES--YNPHVRYGAAMA 612 (929)
T ss_pred HHhccCchhhHHHhhccccccc--chHHHHHHHHHheeeEec---------ChhhchHHHHHHhhh--cChhhhhhHHHH
Confidence 7888877553333333333322 555555667777777755 666666655544332 334333 45
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHhHHHHhhcC
Q psy8160 207 LGRCFAAVGKVHDAFLAYRNSVEKSEGN---ADTWCSIGNKDFSNN 249 (324)
Q Consensus 207 lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~ 249 (324)
||.++...|. .+|+..++.... ||.+ -.+...+|.+..++.
T Consensus 613 LGIaCAGtG~-~eAi~lLepl~~-D~~~fVRQgAlIa~amIm~Q~t 656 (929)
T KOG2062|consen 613 LGIACAGTGL-KEAINLLEPLTS-DPVDFVRQGALIALAMIMIQQT 656 (929)
T ss_pred HhhhhcCCCc-HHHHHHHhhhhc-ChHHHHHHHHHHHHHHHHHhcc
Confidence 6777777774 678887777655 5554 234455555555544
No 406
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=75.37 E-value=5.6 Score=25.74 Aligned_cols=38 Identities=8% Similarity=-0.052 Sum_probs=27.7
Q ss_pred HhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhh
Q psy8160 240 SIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKH 296 (324)
Q Consensus 240 ~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 296 (324)
..|.-+-+.|+ +.+|+.+ |.+ |++.+.+++...|+++.
T Consensus 11 ~~AVe~D~~gr-~~eAi~~----------------Y~~--aIe~L~q~~~~~pD~~~ 48 (75)
T cd02682 11 INAVKAEKEGN-AEDAITN----------------YKK--AIEVLSQIVKNYPDSPT 48 (75)
T ss_pred HHHHHHHhcCC-HHHHHHH----------------HHH--HHHHHHHHHHhCCChHH
Confidence 34444556788 8888776 466 88888888888888775
No 407
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.32 E-value=53 Score=28.32 Aligned_cols=33 Identities=15% Similarity=-0.101 Sum_probs=22.3
Q ss_pred HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCCh
Q psy8160 260 NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASC 294 (324)
Q Consensus 260 ~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (324)
..|.++...|...+++.. +...|..++-..|++
T Consensus 195 n~Y~ny~~~yea~~~l~n--pYv~Yl~~lf~a~n~ 227 (449)
T COG3014 195 NTYSNYLDKYEAYQGLLN--PYVSYLSGLFYALNG 227 (449)
T ss_pred HHHHHHHHHHHhhcccch--HHHHHHHHHhcccCc
Confidence 345566666766677777 777777777777765
No 408
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.81 E-value=55 Score=28.24 Aligned_cols=45 Identities=18% Similarity=0.163 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhccCCCcccchHHH--HHHHHHHHHhccHHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVH--LRLGLMFKVNNEYDSALKHLTLC 77 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~--~~lg~~~~~~~~~~~A~~~~~~a 77 (324)
.-+...|++.++.-|+... .++ ..-|.+++..++|.++...|..+
T Consensus 38 ~~~~~~y~Q~~q~~kk~~~--~il~~L~~Gl~a~~~~dya~S~~~ldAa 84 (449)
T COG3014 38 ESPKKAYEQSKQFTKKKKN--ALLWDLQNGLSALYARDYATSLGVLDAA 84 (449)
T ss_pred hcchhHHHHHHHhhhhhhH--HHHHhhhhhHHHHHhhhHHHhhhHHHHH
Confidence 5577788888888886432 344 34588888888888777766543
No 409
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=74.01 E-value=32 Score=28.68 Aligned_cols=134 Identities=10% Similarity=0.076 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHH------H
Q psy8160 139 KTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCF------A 212 (324)
Q Consensus 139 ~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~------~ 212 (324)
+.-++....++..+ |.... +|...-++.-... ..++..-....++.++.|+.+...|...-.+. .
T Consensus 91 dneld~~~~~lk~~--PK~Yq--iW~HR~~~Le~~p-----~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~ 161 (328)
T COG5536 91 DNELDFLDEALKDN--PKNYQ--IWHHRQWMLELFP-----KPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLF 161 (328)
T ss_pred hcHHHHHHHHHhcC--Cchhh--hhHHHHHHHHhCC-----CcccchhHHHHHHHhcccccccceeeeEeeeeecchhhc
Confidence 44455677888888 88865 8888888874321 22567777888999999999987776543333 3
Q ss_pred HcCCHHHHHHHHHHHHccCCCCHHHHHHhHHH---HhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhh
Q psy8160 213 AVGKVHDAFLAYRNSVEKSEGNADTWCSIGNK---DFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYST 289 (324)
Q Consensus 213 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~---~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~ 289 (324)
.-..+..-.++-..++..++.+..+|...-.. .+..|+ +-. + .-+++ -+++.-.++-
T Consensus 162 N~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~-vis----------------q-k~l~~--eL~~i~~~if 221 (328)
T COG5536 162 NFSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGD-VIS----------------Q-KYLEK--ELEYIFDKIF 221 (328)
T ss_pred cchhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcc-cch----------------H-HHHHH--HHHHHHhhhh
Confidence 33344445666667788899999998876332 233444 111 0 01344 5666666666
Q ss_pred cCCChhhhhhch
Q psy8160 290 SIASCKHINNNK 301 (324)
Q Consensus 290 ~~p~~~~~~~~l 301 (324)
.+|++..++.-+
T Consensus 222 ~~p~~~S~w~y~ 233 (328)
T COG5536 222 TDPDNQSVWGYL 233 (328)
T ss_pred cCccccchhhHH
Confidence 777776655543
No 410
>KOG4151|consensus
Probab=73.48 E-value=18 Score=34.54 Aligned_cols=104 Identities=19% Similarity=0.171 Sum_probs=64.5
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
|..+++.+++..+.--|..++.+-+......+....+.+-++..+ | .+++..++.-..-++...|....++...+
T Consensus 60 ~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~---~--l~~~~~~~~E~~la~~~~p~i~~~Ll~r~ 134 (748)
T KOG4151|consen 60 GNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQL---G--LGEYPKAIPECELALESQPRISKALLKRA 134 (748)
T ss_pred hhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhc---C--ccchhhhcCchhhhhhccchHHHHHhhhh
Confidence 444556666666655555555554111111244455555555442 2 44777777777777777777777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHH
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADT 237 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 237 (324)
.+|...++++-|++...-....+|.++.+
T Consensus 135 ~~y~al~k~d~a~rdl~i~~~~~p~~~~~ 163 (748)
T KOG4151|consen 135 RKYEALNKLDLAVRDLRIVEKMDPSNVSA 163 (748)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCcchH
Confidence 77777777777777777777777777443
No 411
>PF12854 PPR_1: PPR repeat
Probab=72.36 E-value=12 Score=19.67 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=19.3
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8160 200 SGQSLYLLGRCFAAVGKVHDAFLAYRN 226 (324)
Q Consensus 200 ~~~~~~~lg~~~~~~~~~~~A~~~~~~ 226 (324)
+...|..+-..+-+.|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 445666677777788888888877764
No 412
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=72.27 E-value=10 Score=19.78 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHcc
Q psy8160 202 QSLYLLGRCFAAV----GKVHDAFLAYRNSVEK 230 (324)
Q Consensus 202 ~~~~~lg~~~~~~----~~~~~A~~~~~~al~~ 230 (324)
.+.+.+|.+|..- .+..+|+.+|+++.+.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 4567778777643 3788888888887654
No 413
>KOG4521|consensus
Probab=71.47 E-value=1.2e+02 Score=30.86 Aligned_cols=175 Identities=13% Similarity=0.052 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-cC-------------------------CCCch----hhHHHHHHHHhcccHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-ID-------------------------ASPCT----FTKLEGLMFKVNNEYDS 102 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~-------------------------~~~~~----~~~~la~~~~~~~~~~~ 102 (324)
..+.+|.+|...|..-+|+.+|.+|. .- |.... .+...-+++...+-.+.
T Consensus 922 ~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~ 1001 (1480)
T KOG4521|consen 922 IRFMLGIAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEE 1001 (1480)
T ss_pred HHHhhheeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHH
Confidence 56889999999999999999999987 21 11111 11113455666677777
Q ss_pred HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCch-hhHHHHHHHHHHHhhhhhcc---
Q psy8160 103 ALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHL-KADICRQLGWMYHCIDTLGE--- 178 (324)
Q Consensus 103 A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~--- 178 (324)
+...-..|+..-++.....+.+...+=..+...|.+-+|.... -.+ |+.. +-..++++--+.+.......
T Consensus 1002 vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai----~~n--pdserrrdcLRqlvivLfecg~l~~L~~ 1075 (1480)
T KOG4521|consen 1002 VCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI----LRN--PDSERRRDCLRQLVIVLFECGELEALAT 1075 (1480)
T ss_pred HHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH----HcC--CcHHHHHHHHHHHHHHHHhccchHHHhh
Confidence 7777777887777766666556665656666777777665433 223 4322 24455555544433221110
Q ss_pred --cchhHHHHHH-HHHHHhhhCCccHHHHHHHH-HHHHHcCCHHHHH-HHHHHHHccCCC
Q psy8160 179 --KSHRETLAIH-CLQKSIEADPKSGQSLYLLG-RCFAAVGKVHDAF-LAYRNSVEKSEG 233 (324)
Q Consensus 179 --~~~~~~~A~~-~~~~al~~~~~~~~~~~~lg-~~~~~~~~~~~A~-~~~~~al~~~p~ 233 (324)
-.|-.++-.. ..+.+-+..|....-+|.+= --+...+++.+|- .+|+.+..+..+
T Consensus 1076 fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~se 1135 (1480)
T KOG4521|consen 1076 FPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLESE 1135 (1480)
T ss_pred CCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhccc
Confidence 1123334444 45555555555444444443 4466778887754 678888776654
No 414
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=71.26 E-value=34 Score=24.96 Aligned_cols=43 Identities=9% Similarity=0.005 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy8160 182 RETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYR 225 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 225 (324)
.....+.+++..+..++.++.....+..+|... +..+.+..++
T Consensus 22 ~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 22 LLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred cHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 678899999999988887888888888888755 4566666666
No 415
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=70.39 E-value=12 Score=20.01 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=18.2
Q ss_pred HHHHHHH--HHHHHcC-----CHHHHHHHHHHHHcc
Q psy8160 202 QSLYLLG--RCFAAVG-----KVHDAFLAYRNSVEK 230 (324)
Q Consensus 202 ~~~~~lg--~~~~~~~-----~~~~A~~~~~~al~~ 230 (324)
++.+.+| .++..-. ++++|+.+|+++-+.
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~ 37 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQ 37 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHc
Confidence 5566777 4444432 467788888877654
No 416
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=69.73 E-value=28 Score=27.95 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q psy8160 182 RETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA 235 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 235 (324)
...+|+...+.-++..|.+......+=..+.-.|+|++|...++-+-++.|++.
T Consensus 16 sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 16 SLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred cHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 788899999999999999998887788888899999999999999999999863
No 417
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=69.62 E-value=66 Score=26.94 Aligned_cols=136 Identities=14% Similarity=0.128 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHh--hcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhc
Q psy8160 100 YDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQ--RKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLG 177 (324)
Q Consensus 100 ~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 177 (324)
.+.-+.++..++..+|..- .+|...-.++... .++..-....++.++.+ +.+.+ +|.-.-++....+..+
T Consensus 90 ldneld~~~~~lk~~PK~Y----qiW~HR~~~Le~~p~~~~~rEl~itkklld~D--srNyH--~W~YR~~vl~~ie~~~ 161 (328)
T COG5536 90 LDNELDFLDEALKDNPKNY----QIWHHRQWMLELFPKPSWGRELFITKKLLDSD--SRNYH--VWSYRRWVLRTIEDLF 161 (328)
T ss_pred hhcHHHHHHHHHhcCCchh----hhhHHHHHHHHhCCCcccchhHHHHHHHhccc--ccccc--eeeeEeeeeecchhhc
Confidence 3445666777777777765 5666666666544 55666677778888888 76655 4444444442222222
Q ss_pred ccchhHHHHHHHHHHHhhhCCccHHHHHHH---HHHHHHcCC------HHHHHHHHHHHHccCCCCHHHHHHhHHH
Q psy8160 178 EKSHRETLAIHCLQKSIEADPKSGQSLYLL---GRCFAAVGK------VHDAFLAYRNSVEKSEGNADTWCSIGNK 244 (324)
Q Consensus 178 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~l---g~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~lg~~ 244 (324)
. .....+..++-..++..++.+..+|... -...+..|+ +++=+++...++-.+|++...|..+-.+
T Consensus 162 N-~S~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~ 236 (328)
T COG5536 162 N-FSDLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGV 236 (328)
T ss_pred c-chhHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHH
Confidence 1 2245566778888899999999998776 333333444 4556777778888999999998776544
No 418
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=69.37 E-value=13 Score=18.85 Aligned_cols=28 Identities=7% Similarity=0.063 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHhcC
Q psy8160 125 RFHIAHLHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 125 ~~~la~~~~~~~~~~~A~~~~~~al~~~ 152 (324)
+..+-..+...|++++|.+.|.+.....
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g 30 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERG 30 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 3344556677777777877777766544
No 419
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=68.51 E-value=68 Score=26.64 Aligned_cols=28 Identities=14% Similarity=-0.034 Sum_probs=21.5
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy8160 198 PKSGQSLYLLGRCFAAVGKVHDAFLAYR 225 (324)
Q Consensus 198 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 225 (324)
-.+|+.+..+|..+.+.|++.+|..+|-
T Consensus 87 ~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 87 FGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp T--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3567888999999999999999988873
No 420
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=68.32 E-value=27 Score=27.34 Aligned_cols=51 Identities=10% Similarity=0.019 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q psy8160 182 RETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG 233 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 233 (324)
..+..++..++.+...| ++..+..++.++...|+.++|....+++....|.
T Consensus 126 ~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 45566777778888887 6888899999999999999999999999999993
No 421
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=68.27 E-value=99 Score=28.45 Aligned_cols=209 Identities=10% Similarity=-0.033 Sum_probs=115.0
Q ss_pred HHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc
Q psy8160 72 KHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151 (324)
Q Consensus 72 ~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 151 (324)
....+++.-..+-.++..++.+|... ..++-...+++.+..+-.+. ..-..++..|.. ++..++...|.+++..
T Consensus 87 h~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDv----v~~ReLa~~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 87 HLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDV----VIGRELADKYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhH----HHHHHHHHHHHH-hchhhHHHHHHHHHHH
Confidence 34444443344445555667777666 45555566666554433332 344566766665 7778888888888765
Q ss_pred CCCCCc---hhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC-CccHHHHH-HHHHHHHHcCCHHHHHHHHHH
Q psy8160 152 DDLPVH---LKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD-PKSGQSLY-LLGRCFAAVGKVHDAFLAYRN 226 (324)
Q Consensus 152 ~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~-~lg~~~~~~~~~~~A~~~~~~ 226 (324)
.- |.. .-.++|-.+-.+- |+ +.+.-+....+.-+.. .....+.+ .+-.-|....++.+|+.....
T Consensus 161 fI-~~~q~~~i~evWeKL~~~i------~d---D~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~ 230 (711)
T COG1747 161 FI-PRRQNAAIKEVWEKLPELI------GD---DKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKH 230 (711)
T ss_pred hc-chhhhhhHHHHHHHHHHhc------cc---cHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHH
Confidence 41 211 0122333332211 21 3333333333332221 11122222 223446677899999999999
Q ss_pred HHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchh
Q psy8160 227 SVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKD 302 (324)
Q Consensus 227 al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 302 (324)
.++.+..+..+..++-.-+...-+...+- +-|..+..+-..-.++.+ ++..|++.+..+.+|-..+...+
T Consensus 231 il~~d~k~~~ar~~~i~~lRd~y~~~~~~----e~yl~~s~i~~~~rnf~~--~l~dFek~m~f~eGnFVfHqtWg 300 (711)
T COG1747 231 ILEHDEKDVWARKEIIENLRDKYRGHSQL----EEYLKISNISQSGRNFFE--ALNDFEKLMHFDEGNFVFHQTWG 300 (711)
T ss_pred HhhhcchhhhHHHHHHHHHHHHhccchhH----HHHHHhcchhhccccHHH--HHHHHHHHheeccCceEEecccc
Confidence 99999988887766654433211101111 235555555555567888 89999999888887765554443
No 422
>KOG0890|consensus
Probab=67.89 E-value=2e+02 Score=31.90 Aligned_cols=101 Identities=11% Similarity=0.061 Sum_probs=80.4
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-------------------
Q psy8160 199 KSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL------------------- 259 (324)
Q Consensus 199 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~------------------- 259 (324)
...+.|.+.|++....|+++.|....-+|.+.. -+.+....|......|+ ...|+..+
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd-~~~Al~~Lq~~l~~~~~~~~~~~~~~p 1744 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGD-ELNALSVLQEILSKNFPDLHTPYTDTP 1744 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhcc-HHHHHHHHHHHHHhhcccccCCccccc
Confidence 345899999999999999999999999987766 57888899999999999 99998887
Q ss_pred ---------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchh
Q psy8160 260 ---------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKD 302 (324)
Q Consensus 260 ---------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 302 (324)
.+...++.-....++++..+-++.|..+.+..|....-...++
T Consensus 1745 ~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1745 QSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 3456666667777877665678899999999995443333333
No 423
>KOG0686|consensus
Probab=67.67 E-value=89 Score=27.72 Aligned_cols=98 Identities=7% Similarity=-0.005 Sum_probs=57.7
Q ss_pred hhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC--------CCCCc
Q psy8160 86 FTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED--------DLPVH 157 (324)
Q Consensus 86 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------~~~~~ 157 (324)
+..-+|.-|..-|+.+.|+++|-++-+-.... ......+.++-.+-...|+|..-..+-.++..-. ..|..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~-khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSA-KHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcch-HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 34447888888899999999888854322221 1233556666666666777777666666654431 01211
Q ss_pred hhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhh
Q psy8160 158 LKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIE 195 (324)
Q Consensus 158 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 195 (324)
..+...++.+. .++|+.|..++-.+..
T Consensus 231 --l~C~agLa~L~---------lkkyk~aa~~fL~~~~ 257 (466)
T KOG0686|consen 231 --LKCAAGLANLL---------LKKYKSAAKYFLLAEF 257 (466)
T ss_pred --hHHHHHHHHHH---------HHHHHHHHHHHHhCCC
Confidence 22444444443 3378888888877753
No 424
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=67.05 E-value=12 Score=18.62 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=17.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy8160 204 LYLLGRCFAAVGKVHDAFLAYRNSVE 229 (324)
Q Consensus 204 ~~~lg~~~~~~~~~~~A~~~~~~al~ 229 (324)
|..+=..|...|++++|...|++..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44555677777778888777776544
No 425
>KOG0546|consensus
Probab=66.48 E-value=15 Score=31.65 Aligned_cols=63 Identities=10% Similarity=0.133 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHH
Q psy8160 182 RETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNK 244 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 244 (324)
.+..|+.....++..++....+++..|..+....++++|+..+..+....|++....-.+..+
T Consensus 290 ~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 290 GRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENV 352 (372)
T ss_pred CCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHh
Confidence 455566665666666666667777777777777777777777777777777776555444433
No 426
>KOG0292|consensus
Probab=66.27 E-value=1.4e+02 Score=29.51 Aligned_cols=114 Identities=10% Similarity=0.010 Sum_probs=64.0
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhcCC------CCCchhhHHHHHHHHHHHh---hhhh--cccchhHHHH--HHHHHH
Q psy8160 126 FHIAHLHEVQRKYKTAKDSYEQLLKEDD------LPVHLKADICRQLGWMYHC---IDTL--GEKSHRETLA--IHCLQK 192 (324)
Q Consensus 126 ~~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~~~~~l~~~~~~---~~~~--~~~~~~~~~A--~~~~~~ 192 (324)
.+.|.-....|++.+|++.|+.++-.-. ..+..++.-+...+.-|.. ++.. +......+++ +..|=.
T Consensus 995 l~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt 1074 (1202)
T KOG0292|consen 995 LQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFT 1074 (1202)
T ss_pred HHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhh
Confidence 3345555677999999999999874420 0111113334444433321 1100 0012233444 223333
Q ss_pred HhhhCCccHHHHHHHH-HHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q psy8160 193 SIEADPKSGQSLYLLG-RCFAAVGKVHDAFLAYRNSVEKSEGNADTWC 239 (324)
Q Consensus 193 al~~~~~~~~~~~~lg-~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 239 (324)
-..+.|.....-...| .++++.+++..|-...++.+++.|..+.+-.
T Consensus 1075 ~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q 1122 (1202)
T KOG0292|consen 1075 HCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQ 1122 (1202)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHH
Confidence 3455565443333333 5688999999999999999999998766543
No 427
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=65.41 E-value=1.1e+02 Score=27.78 Aligned_cols=45 Identities=7% Similarity=0.067 Sum_probs=35.1
Q ss_pred HHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q psy8160 189 CLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG 233 (324)
Q Consensus 189 ~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 233 (324)
.+++++.-.|..++.|+.........++-+.|+...++++...|.
T Consensus 290 ~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps 334 (660)
T COG5107 290 IHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS 334 (660)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc
Confidence 455666666777788888777778888888999888888877776
No 428
>KOG2063|consensus
Probab=65.35 E-value=1.5e+02 Score=29.47 Aligned_cols=173 Identities=14% Similarity=0.032 Sum_probs=91.8
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHhcCC--CCchh---hHHHHHHHHhcccH--HHHHHHHHHHHHhcCCCcc---cH--
Q psy8160 54 HLRLGLMFKVNNEYDSALKHLTLCLIDA--SPCTF---TKLEGLMFKVNNEY--DSALKHLTLCLIDASPCTF---TK-- 121 (324)
Q Consensus 54 ~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~---~~~la~~~~~~~~~--~~A~~~~~~~l~~~~~~~~---~~-- 121 (324)
+..|+..|...|+.++|++.++.....| .+... ....-..+...+.. +-..++-.-.+..+|.... ..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 6788999999999999999999988322 22221 12222233333333 4444444444554444322 00
Q ss_pred --HHHHHHHHH--HHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhh-hcccchhHHHHHHH--HHHHh
Q psy8160 122 --LEVRFHIAH--LHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDT-LGEKSHRETLAIHC--LQKSI 194 (324)
Q Consensus 122 --~~~~~~la~--~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~A~~~--~~~al 194 (324)
...-..-.. -|......+-++.+++.++...+.++. ..+..+...|..... .+...++-+++.+. .++..
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~---~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~ 663 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTST---LLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLL 663 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccch---HHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHH
Confidence 000011122 234556778889999999887744432 245555555543211 11111122223222 22221
Q ss_pred ---h----hCCcc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy8160 195 ---E----ADPKS-------GQSLYLLGRCFAAVGKVHDAFLAYRNSVE 229 (324)
Q Consensus 195 ---~----~~~~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 229 (324)
+ .+|.. ...|...+.++.++|+.++|+..|-..+.
T Consensus 664 ~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 664 DFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred HHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 1 12211 25667778888888999999888877664
No 429
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=64.86 E-value=57 Score=26.30 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=32.0
Q ss_pred HHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcC
Q psy8160 61 FKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDAS 115 (324)
Q Consensus 61 ~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 115 (324)
..+.+...+|+...+.-+ ..|.+......+=.++...|+++.|...++-+-...|
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p 66 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSP 66 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCc
Confidence 344556666666666655 6666666666666666666666666665554444333
No 430
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=64.27 E-value=44 Score=24.33 Aligned_cols=72 Identities=6% Similarity=-0.017 Sum_probs=48.0
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-------------------HHHHhhHHHHHH
Q psy8160 211 FAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-------------------NKYRDLGDFLVI 271 (324)
Q Consensus 211 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-------------------~~~~~lg~~~~~ 271 (324)
+...+.....+.+++.++..++.++.....+..+|...+ ..+.+..+ ..|.....+|.+
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~--~~~ll~~l~~~~~~yd~~~~~~~c~~~~l~~~~~~l~~k 94 (140)
T smart00299 17 FEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD--PQKEIERLDNKSNHYDIEKVGKLCEKAKLYEEAVELYKK 94 (140)
T ss_pred HHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC--HHHHHHHHHhccccCCHHHHHHHHHHcCcHHHHHHHHHh
Confidence 345577888999999998888888888888887777553 34444443 334455556666
Q ss_pred cCCCCcchHHHHHHH
Q psy8160 272 NNIPTSNNNRQCYNS 286 (324)
Q Consensus 272 ~~~~~~~~A~~~~~~ 286 (324)
.|++.+ |++.+-.
T Consensus 95 ~~~~~~--Al~~~l~ 107 (140)
T smart00299 95 DGNFKD--AIVTLIE 107 (140)
T ss_pred hcCHHH--HHHHHHH
Confidence 666666 6665543
No 431
>KOG0276|consensus
Probab=63.58 E-value=63 Score=30.26 Aligned_cols=63 Identities=13% Similarity=0.205 Sum_probs=46.2
Q ss_pred HHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 187 IHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 187 ~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
..+.++|+++.++ ++-.+.|+ .+.|+++.|.+...+ .++..-|..||.+....++ +..|.+||
T Consensus 627 ~g~~e~AL~~s~D-~d~rFela---l~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~~~~-l~lA~EC~ 689 (794)
T KOG0276|consen 627 QGMKEQALELSTD-PDQRFELA---LKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALSAGE-LPLASECF 689 (794)
T ss_pred ccchHhhhhcCCC-hhhhhhhh---hhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhhccc-chhHHHHH
Confidence 3355666666653 44444443 677888988876544 3567789999999999999 99999999
No 432
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=63.46 E-value=42 Score=24.16 Aligned_cols=28 Identities=7% Similarity=-0.059 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHh
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLK 150 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~ 150 (324)
-..-++|..+..+|+.+-.+.+++-+-+
T Consensus 51 isCHNLA~FWR~~gd~~yELkYLqlASE 78 (140)
T PF10952_consen 51 ISCHNLADFWRSQGDSDYELKYLQLASE 78 (140)
T ss_pred HHHhhHHHHHHHcCChHHHHHHHHHHHH
Confidence 3567889999999999999988876543
No 433
>KOG4279|consensus
Probab=63.40 E-value=1.1e+02 Score=29.68 Aligned_cols=136 Identities=18% Similarity=0.195 Sum_probs=78.6
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhcCCCcc--cHHHHHHHHHHHHHH---hhcHHHHHHHHHHHHhcCCCCCchhhHH
Q psy8160 88 KLEGLMFKVNNEYDSALKHLTLCLIDASPCTF--TKLEVRFHIAHLHEV---QRKYKTAKDSYEQLLKEDDLPVHLKADI 162 (324)
Q Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~--~~~~~~~~la~~~~~---~~~~~~A~~~~~~al~~~~~~~~~~~~~ 162 (324)
..+-..|....+|+.-++..+..- ..|.+.. ....+.+..+..+.+ -|+-++|++..-.+++..+ |-. ++.
T Consensus 205 ~nlmlSyRDvQdY~amirLVe~Lk-~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg-~va--pDm 280 (1226)
T KOG4279|consen 205 SNLMLSYRDVQDYDAMIRLVEDLK-RIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEG-PVA--PDM 280 (1226)
T ss_pred HHHHhhhccccchHHHHHHHHHHH-hCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcC-CCC--Cce
Confidence 334555666788888888766543 2332211 111234444444433 3788999999888888763 222 457
Q ss_pred HHHHHHHHHhhhhhcc--cchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q psy8160 163 CRQLGWMYHCIDTLGE--KSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGK-VHDAFLAYRNSV 228 (324)
Q Consensus 163 ~~~l~~~~~~~~~~~~--~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al 228 (324)
++..|++|.-+-...+ ..+..+.|+.+|+++.+..|... +-.+++.++...|+ ++...+.=.-.+
T Consensus 281 ~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~-sGIN~atLL~aaG~~Fens~Elq~Igm 348 (1226)
T KOG4279|consen 281 YCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY-SGINLATLLRAAGEHFENSLELQQIGM 348 (1226)
T ss_pred eeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh-ccccHHHHHHHhhhhccchHHHHHHHH
Confidence 8888888843321111 13357789999999999998643 33455555555543 344444333333
No 434
>KOG2062|consensus
Probab=62.87 E-value=1.5e+02 Score=28.66 Aligned_cols=179 Identities=14% Similarity=0.072 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhccC--CCc-ccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhH--HHHHHHHhcccHHHHHH
Q psy8160 31 IKAIKTFQQLLYVD--PSY-LRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTK--LEGLMFKVNNEYDSALK 105 (324)
Q Consensus 31 ~~A~~~~~~~l~~~--p~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~la~~~~~~~~~~~A~~ 105 (324)
.+|.+...-.|-.+ |.. .....+++.+|.++...|+- ..+++...+.+.++..... .||.=+...|.- -.+
T Consensus 374 ~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~--~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa--~~e 449 (929)
T KOG2062|consen 374 NQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRG--ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSA--NEE 449 (929)
T ss_pred chHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCcc--HHHHHHHHHHhccchhhhhhhhhhccchhcccc--cHH
Confidence 55565555544332 111 11234688888888877764 6777777772222222222 233222223321 122
Q ss_pred HHHH---HHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchh
Q psy8160 106 HLTL---CLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHR 182 (324)
Q Consensus 106 ~~~~---~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 182 (324)
.|++ .+..+. ...-..+-..+|.+....++ .+|++-+...-. . ..+ ..+.+.+|.-... .. .|+
T Consensus 450 iYe~lKevLy~D~--AvsGEAAgi~MGl~mlGt~~-~eaiedm~~Ya~-E--TQH--eki~RGl~vGiaL-~~----ygr 516 (929)
T KOG2062|consen 450 IYEKLKEVLYNDS--AVSGEAAGIAMGLLMLGTAN-QEAIEDMLTYAQ-E--TQH--EKIIRGLAVGIAL-VV----YGR 516 (929)
T ss_pred HHHHHHHHHhccc--hhhhhHHHHhhhhHhhCcCc-HHHHHHHHHHhh-h--hhH--HHHHHHHHHhHHH-HH----hhh
Confidence 2332 222211 11112344556666555554 334443222111 1 222 2255544422211 11 337
Q ss_pred HHHHHHHHHHHhhhCCccH----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8160 183 ETLAIHCLQKSIEADPKSG----QSLYLLGRCFAAVGKVHDAFLAYRNSV 228 (324)
Q Consensus 183 ~~~A~~~~~~al~~~~~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al 228 (324)
.++|-.+.++++... +| ...+.+|..|...|+..--...+.-++
T Consensus 517 qe~Ad~lI~el~~dk--dpilR~~Gm~t~alAy~GTgnnkair~lLh~aV 564 (929)
T KOG2062|consen 517 QEDADPLIKELLRDK--DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAV 564 (929)
T ss_pred hhhhHHHHHHHhcCC--chhhhhhhHHHHHHHHhccCchhhHHHhhcccc
Confidence 778888888876543 33 345677888888887544334443333
No 435
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=62.43 E-value=46 Score=24.47 Aligned_cols=50 Identities=10% Similarity=0.153 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q psy8160 182 RETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKS 231 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 231 (324)
+-++--+.+.........+|+.++.+|.+|...|+..+|-+.+++|-+..
T Consensus 101 kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 101 KKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp -HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 34444445555554556678999999999999999999999999886543
No 436
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=62.21 E-value=16 Score=23.64 Aligned_cols=14 Identities=14% Similarity=0.204 Sum_probs=8.1
Q ss_pred ccHHHHHHHHHHHH
Q psy8160 98 NEYDSALKHLTLCL 111 (324)
Q Consensus 98 ~~~~~A~~~~~~~l 111 (324)
|+|++|+..|..++
T Consensus 20 gny~eA~~lY~~al 33 (75)
T cd02680 20 GNAEEAIELYTEAV 33 (75)
T ss_pred hhHHHHHHHHHHHH
Confidence 45566666555554
No 437
>KOG0546|consensus
Probab=61.89 E-value=6.9 Score=33.51 Aligned_cols=57 Identities=9% Similarity=-0.044 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
....+++.+-...+.+..|+.....++..++....+++..+..+....+ +++|++.+
T Consensus 276 ~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~-~~~a~~~~ 332 (372)
T KOG0546|consen 276 SIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKN-YDEALEDL 332 (372)
T ss_pred ccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhc-hhhhHHHH
Confidence 4445588888999999999999888888999999999999999999999 99999888
No 438
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=61.33 E-value=42 Score=21.75 Aligned_cols=20 Identities=5% Similarity=0.044 Sum_probs=11.9
Q ss_pred HHHHHHHHhccHHHHHHHHH
Q psy8160 56 RLGLMFKVNNEYDSALKHLT 75 (324)
Q Consensus 56 ~lg~~~~~~~~~~~A~~~~~ 75 (324)
..|.-+-..|++++|+.+|+
T Consensus 11 ~~AVe~D~~gr~~eAi~~Y~ 30 (75)
T cd02682 11 INAVKAEKEGNAEDAITNYK 30 (75)
T ss_pred HHHHHHHhcCCHHHHHHHHH
Confidence 33444445577777777776
No 439
>KOG4521|consensus
Probab=59.39 E-value=2.2e+02 Score=29.31 Aligned_cols=33 Identities=15% Similarity=0.058 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC
Q psy8160 120 TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 120 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 152 (324)
.+....+.+|.+|...|..-+|+.+|.++..-.
T Consensus 918 lk~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ 950 (1480)
T KOG4521|consen 918 LKPVIRFMLGIAYLGTGEPVKALNCFQSALSGF 950 (1480)
T ss_pred hHHHHHHhhheeeecCCchHHHHHHHHHHhhcc
Confidence 344677888999999999999999999987654
No 440
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=59.20 E-value=70 Score=23.58 Aligned_cols=57 Identities=11% Similarity=-0.015 Sum_probs=39.1
Q ss_pred HHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC
Q psy8160 92 LMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 92 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 152 (324)
.....+|+-++-.+.+.......... ++.+..+|..|...|+..+|-+.+++|.+..
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn~~~~----p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKNEEIN----PEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH-----S-----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhccHHHHHHHHHHHhhccCCC----HHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 34456677777777766666433333 4889999999999999999999999998765
No 441
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=58.68 E-value=1.4e+02 Score=26.86 Aligned_cols=27 Identities=11% Similarity=-0.137 Sum_probs=20.4
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCHH
Q psy8160 210 CFAAVGKVHDAFLAYRNSVEKSEGNAD 236 (324)
Q Consensus 210 ~~~~~~~~~~A~~~~~~al~~~p~~~~ 236 (324)
..++.++|..|-.+.++.|++.|....
T Consensus 309 ~~~K~KNf~tAa~FArRLLel~p~~~~ 335 (422)
T PF06957_consen 309 QAFKLKNFITAASFARRLLELNPSPEV 335 (422)
T ss_dssp HCCCTTBHHHHHHHHHHHHCT--SCHH
T ss_pred HHHHhccHHHHHHHHHHHHHcCCCHHH
Confidence 345779999999999999999987543
No 442
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=58.60 E-value=65 Score=28.25 Aligned_cols=42 Identities=10% Similarity=-0.111 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 217 VHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 217 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.-+|+..++.++..+|.+......+..+|...|- ...|...|
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~-~~~A~~~~ 240 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGA-GSLALEHY 240 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 3456666777777777777777777777777777 77777666
No 443
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=58.58 E-value=1.1e+02 Score=25.69 Aligned_cols=65 Identities=17% Similarity=0.100 Sum_probs=47.4
Q ss_pred HHHHHHHHhhhCCccHHHHHHHHHHHHHc----------------------CCHHHHHHHHHHHHccCCCCHHHHHHhHH
Q psy8160 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAV----------------------GKVHDAFLAYRNSVEKSEGNADTWCSIGN 243 (324)
Q Consensus 186 A~~~~~~al~~~~~~~~~~~~lg~~~~~~----------------------~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 243 (324)
-...++.=++..|++..++..+|..+... .-.+.|...+.+|+.++|....+...+-.
T Consensus 62 ~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~ 141 (277)
T PF13226_consen 62 RLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMIN 141 (277)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 44555555678999999888888877765 12456889999999999999887776655
Q ss_pred HHhhcCC
Q psy8160 244 KDFSNNS 250 (324)
Q Consensus 244 ~~~~~~~ 250 (324)
+-...|+
T Consensus 142 ~s~~fge 148 (277)
T PF13226_consen 142 ISAYFGE 148 (277)
T ss_pred HHhhcCC
Confidence 5444444
No 444
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=57.87 E-value=24 Score=22.19 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=13.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHc
Q psy8160 207 LGRCFAAVGKVHDAFLAYRNSVE 229 (324)
Q Consensus 207 lg~~~~~~~~~~~A~~~~~~al~ 229 (324)
.|.-.-..|++++|+.+|.+++.
T Consensus 11 ~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 11 KAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444456677777777666654
No 445
>KOG2908|consensus
Probab=57.30 E-value=1.3e+02 Score=26.07 Aligned_cols=79 Identities=16% Similarity=0.104 Sum_probs=50.4
Q ss_pred HHHhcccHHHHHHHHHHHHHhcCCCcc--cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHh----cCCCCCchhhHHHHHH
Q psy8160 93 MFKVNNEYDSALKHLTLCLIDASPCTF--TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLK----EDDLPVHLKADICRQL 166 (324)
Q Consensus 93 ~~~~~~~~~~A~~~~~~~l~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~----~~~~~~~~~~~~~~~l 166 (324)
+....++.++|+++.++.......... ...-+...+|.++...|+..++.+.+...-. ..+.|.+++ ..++.+
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh-~~fY~l 162 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH-SSFYSL 162 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh-hhHHHH
Confidence 344557899999999988765333322 3344566779999999999999887766543 233344333 345556
Q ss_pred HHHHHh
Q psy8160 167 GWMYHC 172 (324)
Q Consensus 167 ~~~~~~ 172 (324)
+.-|++
T Consensus 163 ssqYyk 168 (380)
T KOG2908|consen 163 SSQYYK 168 (380)
T ss_pred HHHHHH
Confidence 655544
No 446
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=55.96 E-value=18 Score=23.43 Aligned_cols=14 Identities=43% Similarity=0.629 Sum_probs=6.8
Q ss_pred CCHHHHHHHHHHHH
Q psy8160 215 GKVHDAFLAYRNSV 228 (324)
Q Consensus 215 ~~~~~A~~~~~~al 228 (324)
|++++|+.+|..++
T Consensus 20 ~~y~eA~~~Y~~~i 33 (75)
T cd02677 20 GDYEAAFEFYRAGV 33 (75)
T ss_pred hhHHHHHHHHHHHH
Confidence 44455444444444
No 447
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=55.83 E-value=26 Score=25.13 Aligned_cols=30 Identities=23% Similarity=0.480 Sum_probs=21.6
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHh-cCCCCc
Q psy8160 55 LRLGLMFKVNNEYDSALKHLTLCL-IDASPC 84 (324)
Q Consensus 55 ~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~ 84 (324)
..+|..+...|++++|..+|-+|+ ..|...
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~ 97 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPA 97 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHH
Confidence 467887788888888888888877 666543
No 448
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=55.59 E-value=1.1e+02 Score=26.77 Aligned_cols=46 Identities=15% Similarity=0.061 Sum_probs=34.2
Q ss_pred ccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHH
Q psy8160 65 NEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLC 110 (324)
Q Consensus 65 ~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 110 (324)
...-+|+-.++.++ .+|.+......+..+|...|-...|...|...
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 34456777777777 77888888888888888888888887777654
No 449
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=55.35 E-value=20 Score=31.47 Aligned_cols=32 Identities=13% Similarity=0.212 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCC
Q psy8160 183 ETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGK 216 (324)
Q Consensus 183 ~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 216 (324)
...|+.++++|.. .++|+.|..+|.+++..|+
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGN 365 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGN 365 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhc
Confidence 4455555555533 3445555555555555443
No 450
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=55.21 E-value=29 Score=18.25 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHhH
Q psy8160 217 VHDAFLAYRNSVEKSEGNADTWCSIG 242 (324)
Q Consensus 217 ~~~A~~~~~~al~~~p~~~~~~~~lg 242 (324)
++.|...|++.+...|+ +..|...|
T Consensus 3 ~dRAR~IyeR~v~~hp~-~k~WikyA 27 (32)
T PF02184_consen 3 FDRARSIYERFVLVHPE-VKNWIKYA 27 (32)
T ss_pred HHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 45566666666666553 45554443
No 451
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=53.61 E-value=42 Score=21.04 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=13.9
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHh
Q psy8160 128 IAHLHEVQRKYKTAKDSYEQLLK 150 (324)
Q Consensus 128 la~~~~~~~~~~~A~~~~~~al~ 150 (324)
.|.-....|++++|+.+|.+++.
T Consensus 11 ~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 11 KAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 34445556677777766666654
No 452
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=53.00 E-value=27 Score=22.92 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy8160 182 RETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVE 229 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 229 (324)
.++.|..+..+++..+. .|+.++|+.+|++++.
T Consensus 4 ~~~~A~~~I~kaL~~dE---------------~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 4 YYKQAFEEISKALRADE---------------WGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHHHHHHHhhhhh---------------cCCHHHHHHHHHHHHH
Confidence 46667777666666553 3566666666666654
No 453
>PF13041 PPR_2: PPR repeat family
Probab=52.78 E-value=43 Score=19.18 Aligned_cols=34 Identities=12% Similarity=0.017 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCC
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPV 156 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 156 (324)
..+..+-..+...|++++|.+.|++..+..-.|+
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~ 37 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPD 37 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC
Confidence 4566677778889999999999999887764454
No 454
>KOG2561|consensus
Probab=52.28 E-value=53 Score=29.35 Aligned_cols=28 Identities=7% Similarity=-0.153 Sum_probs=18.0
Q ss_pred HHHHhhHHHHHHcCCCCcchHHHHHHHhhh
Q psy8160 260 NKYRDLGDFLVINNIPTSNNNRQCYNSYST 289 (324)
Q Consensus 260 ~~~~~lg~~~~~~~~~~~~~A~~~~~~al~ 289 (324)
..+..-|.+..++|+-++ |.++++.|..
T Consensus 268 RL~LLQGV~~yHqg~~de--Aye~le~a~~ 295 (568)
T KOG2561|consen 268 RLELLQGVVAYHQGQRDE--AYEALESAHA 295 (568)
T ss_pred HHHHHHHHHHHHcCCcHH--HHHHHHHHHH
Confidence 445555666677777777 7777766654
No 455
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=51.92 E-value=1.5e+02 Score=25.16 Aligned_cols=129 Identities=12% Similarity=0.036 Sum_probs=77.9
Q ss_pred cccHHHHHHHHHHHHHhcCC-C-cccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh---hHHHHHHHHHHH
Q psy8160 97 NNEYDSALKHLTLCLIDASP-C-TFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK---ADICRQLGWMYH 171 (324)
Q Consensus 97 ~~~~~~A~~~~~~~l~~~~~-~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~l~~~~~ 171 (324)
...-++-++-+.+.+..... + .....+++.++|..|.+.++.+.+.+...+.+...-.. ..+ .-...++|.+|-
T Consensus 88 ~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st-g~KiDv~l~kiRlg~~y~ 166 (412)
T COG5187 88 LKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST-GLKIDVFLCKIRLGLIYG 166 (412)
T ss_pred HHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc-ccchhhHHHHHHHHHhhc
Confidence 34445555555455443222 2 23556899999999999999999999888877654111 111 124456676663
Q ss_pred hhhhhcccchhHHHHHHHHHHHhhhCCc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q psy8160 172 CIDTLGEKSHRETLAIHCLQKSIEADPK---SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG 233 (324)
Q Consensus 172 ~~~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 233 (324)
.+ .-.++.++.....++...+ ....-...|...+...++.+|-..+...+.....
T Consensus 167 d~-------~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 167 DR-------KVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred cH-------HHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 32 1344555555555544321 1123334577777888899999988888765543
No 456
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=50.94 E-value=1.4e+02 Score=24.57 Aligned_cols=56 Identities=7% Similarity=0.150 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHh-c-CC--CCchhhHHHHHHHHhc-ccHHHHHHHHHH
Q psy8160 54 HLRLGLMFKVNNEYDSALKHLTLCL-I-DA--SPCTFTKLEGLMFKVN-NEYDSALKHLTL 109 (324)
Q Consensus 54 ~~~lg~~~~~~~~~~~A~~~~~~al-~-~~--~~~~~~~~la~~~~~~-~~~~~A~~~~~~ 109 (324)
+..++.+.-+.++|++.+.+.++++ . +| -...-..++...|... |....+.+....
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~s 64 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISS 64 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhH
Confidence 4567888888999999999999988 5 44 3344455566666544 777777776665
No 457
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=50.77 E-value=31 Score=22.14 Aligned_cols=14 Identities=21% Similarity=0.574 Sum_probs=6.8
Q ss_pred CCHHHHHHHHHHHH
Q psy8160 215 GKVHDAFLAYRNSV 228 (324)
Q Consensus 215 ~~~~~A~~~~~~al 228 (324)
|++++|+.+|..++
T Consensus 20 g~~~~Al~~Y~~a~ 33 (75)
T cd02656 20 GNYEEALELYKEAL 33 (75)
T ss_pred CCHHHHHHHHHHHH
Confidence 45555544444443
No 458
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=49.40 E-value=1.9e+02 Score=25.60 Aligned_cols=35 Identities=6% Similarity=-0.030 Sum_probs=25.2
Q ss_pred HHHHhhHHHHHHc---------CCCCcchHHHHHHHhhhcCCChhh
Q psy8160 260 NKYRDLGDFLVIN---------NIPTSNNNRQCYNSYSTSIASCKH 296 (324)
Q Consensus 260 ~~~~~lg~~~~~~---------~~~~~~~A~~~~~~al~~~p~~~~ 296 (324)
.+++.+|.+|.+. +.... ++.+|+.+++.-..+|.
T Consensus 301 ~a~f~~arl~~K~~~~~~~~~~~~l~~--sl~~y~~vv~y~~~~~~ 344 (371)
T PF12309_consen 301 YAYFHIARLYSKLITSDPKEQLENLEK--SLEYYKWVVDYCEKHPE 344 (371)
T ss_pred HHHHHHHHHHccccCCChHHHHHHHHH--HHHHHHHHHHHHHhChh
Confidence 7888888888766 34566 88888888776555554
No 459
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=48.83 E-value=71 Score=22.29 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=13.1
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHh
Q psy8160 55 LRLGLMFKVNNEYDSALKHLTLCL 78 (324)
Q Consensus 55 ~~lg~~~~~~~~~~~A~~~~~~al 78 (324)
..-|.+....||++.|.+...++-
T Consensus 63 l~~Gl~al~~G~~~~A~k~~~~a~ 86 (108)
T PF07219_consen 63 LSRGLIALAEGDWQRAEKLLAKAA 86 (108)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444555555555555555555554
No 460
>KOG2561|consensus
Probab=48.74 E-value=81 Score=28.27 Aligned_cols=102 Identities=18% Similarity=0.103 Sum_probs=60.8
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhcCCCCCc--h-----hhHHHHHHHHHHHhhh---hhcccchhHHHHHHHHHHHhhh-
Q psy8160 128 IAHLHEVQRKYKTAKDSYEQLLKEDDLPVH--L-----KADICRQLGWMYHCID---TLGEKSHRETLAIHCLQKSIEA- 196 (324)
Q Consensus 128 la~~~~~~~~~~~A~~~~~~al~~~~~~~~--~-----~~~~~~~l~~~~~~~~---~~~~~~~~~~~A~~~~~~al~~- 196 (324)
.|........|++|+.++-.+-+....++. . .+-.-.-+-|||++.. .+.++..+...|.+.|.++--.
T Consensus 169 kaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~syGen 248 (568)
T KOG2561|consen 169 KARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERSYGEN 248 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhhhhhh
Confidence 355556667777777766555433211111 0 1223444568887643 3344555666676666665321
Q ss_pred --------CCccH------HHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy8160 197 --------DPKSG------QSLYLLGRCFAAVGKVHDAFLAYRNSVE 229 (324)
Q Consensus 197 --------~~~~~------~~~~~lg~~~~~~~~~~~A~~~~~~al~ 229 (324)
.+..| ..+..-|.+.+.+|+-++|.++++.+..
T Consensus 249 l~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 249 LSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred hHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 12333 3445569999999999999999998864
No 461
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=48.66 E-value=39 Score=18.13 Aligned_cols=33 Identities=12% Similarity=0.177 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC
Q psy8160 162 ICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP 198 (324)
Q Consensus 162 ~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 198 (324)
+.++.+|+...-.. ..+..+++..++..+...|
T Consensus 3 t~FnyAw~Lv~S~~----~~d~~~Gi~lLe~l~~~~p 35 (35)
T PF14852_consen 3 TQFNYAWGLVKSNN----REDQQEGIALLEELYRDEP 35 (35)
T ss_dssp HHHHHHHHHHHSSS----HHHHHHHHHHHHHHCCCS-
T ss_pred chhHHHHHHhcCCC----HHHHHHHHHHHHHHHhccC
Confidence 66778888855221 3377888998888776554
No 462
>KOG4459|consensus
Probab=48.45 E-value=2.1e+02 Score=25.88 Aligned_cols=84 Identities=14% Similarity=0.024 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----HHHHhhHHHHHHcCCCC
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-----NKYRDLGDFLVINNIPT 276 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-----~~~~~lg~~~~~~~~~~ 276 (324)
..+..|=.+|++.|+..+|++.-...+-.+|++-++..++-......|. -++-+... ..|+.+|.-....+++.
T Consensus 134 ~py~YL~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l~~-s~d~l~DlE~~~~~~~Fir~v~~y~~~d~~ 212 (471)
T KOG4459|consen 134 LPYQYLQFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTMLGV-SEDELTDLERREHEQWFIRGVRLYSGEDPR 212 (471)
T ss_pred hHHHHHHHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhccCC-CcccccccccchHHHHHHHHhhhccccCch
Confidence 4566777899999999999999999999999998888777655555565 44444333 77888888777777776
Q ss_pred cchHHHHHHHhh
Q psy8160 277 SNNNRQCYNSYS 288 (324)
Q Consensus 277 ~~~A~~~~~~al 288 (324)
. ....+..|+
T Consensus 213 ~--~v~~ve~AL 222 (471)
T KOG4459|consen 213 Q--CVPEVELAL 222 (471)
T ss_pred h--cchhHHHHH
Confidence 6 655544444
No 463
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=47.64 E-value=50 Score=23.73 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=25.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q psy8160 205 YLLGRCFAAVGKVHDAFLAYRNSVEKSEGNAD 236 (324)
Q Consensus 205 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 236 (324)
..+|..+...|++++|..+|-+|+...|+-.+
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~ 98 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAE 98 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHH
Confidence 45788888889999999999999988886443
No 464
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=47.39 E-value=38 Score=17.07 Aligned_cols=26 Identities=4% Similarity=0.004 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHh
Q psy8160 125 RFHIAHLHEVQRKYKTAKDSYEQLLK 150 (324)
Q Consensus 125 ~~~la~~~~~~~~~~~A~~~~~~al~ 150 (324)
+..+-.++...|+++.|...|+...+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44455566667777777777766554
No 465
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=46.81 E-value=80 Score=24.64 Aligned_cols=47 Identities=19% Similarity=0.162 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCC
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDA 81 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~ 81 (324)
+..++..++.+...|+ +.++..++.++...|+.++|.....++. .-|
T Consensus 128 ~~~~~~a~~~l~~~P~----~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 128 EAYIEWAERLLRRRPD----PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHhCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4455566666666664 3466777777777777777777777766 555
No 466
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=46.71 E-value=61 Score=30.01 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=13.0
Q ss_pred chhhHHHHHHHHhcccHHHHHHHHHHH
Q psy8160 84 CTFTKLEGLMFKVNNEYDSALKHLTLC 110 (324)
Q Consensus 84 ~~~~~~la~~~~~~~~~~~A~~~~~~~ 110 (324)
...+..+|..+...++|.+|+..+-.+
T Consensus 318 vYPYty~gg~~yR~~~~~eA~~~Wa~a 344 (618)
T PF05053_consen 318 VYPYTYLGGYYYRHKRYREALRSWAEA 344 (618)
T ss_dssp SHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred cccceehhhHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555544
No 467
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=46.25 E-value=47 Score=21.60 Aligned_cols=17 Identities=18% Similarity=0.495 Sum_probs=9.6
Q ss_pred HcCCHHHHHHHHHHHHc
Q psy8160 213 AVGKVHDAFLAYRNSVE 229 (324)
Q Consensus 213 ~~~~~~~A~~~~~~al~ 229 (324)
..|++++|+.+|..+++
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HccCHHHHHHHHHHHHH
Confidence 44566666666655554
No 468
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=43.85 E-value=2.3e+02 Score=25.05 Aligned_cols=13 Identities=15% Similarity=0.204 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHh
Q psy8160 160 ADICRQLGWMYHC 172 (324)
Q Consensus 160 ~~~~~~l~~~~~~ 172 (324)
.++++.+|.+|..
T Consensus 222 rql~fElae~~~~ 234 (371)
T PF12309_consen 222 RQLWFELAEIYSE 234 (371)
T ss_pred HHHHHHHHHHHHH
Confidence 3466667766643
No 469
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=43.57 E-value=1.2e+02 Score=21.88 Aligned_cols=71 Identities=18% Similarity=0.171 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHh-cC-----CCCchh----------hHHHHHHHHhcccHHHHHHHHHHH----HHh
Q psy8160 54 HLRLGLMFKVNNEYDSALKHLTLCL-ID-----ASPCTF----------TKLEGLMFKVNNEYDSALKHLTLC----LID 113 (324)
Q Consensus 54 ~~~lg~~~~~~~~~~~A~~~~~~al-~~-----~~~~~~----------~~~la~~~~~~~~~~~A~~~~~~~----l~~ 113 (324)
+..+|...++.+++-.|+-+|++|+ +- +..... .-.+|..+..+|+.+-.+++++-+ +..
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 5667778888888888888888887 31 111111 122789999999999999988765 445
Q ss_pred cCCCcccHHHH
Q psy8160 114 ASPCTFTKLEV 124 (324)
Q Consensus 114 ~~~~~~~~~~~ 124 (324)
.|..+...-++
T Consensus 84 iPQCp~~~C~a 94 (140)
T PF10952_consen 84 IPQCPNTECEA 94 (140)
T ss_pred ccCCCCcchHH
Confidence 66665443333
No 470
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=43.47 E-value=2.1e+02 Score=26.93 Aligned_cols=74 Identities=8% Similarity=0.193 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 183 ETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 183 ~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.+.+....+.-+.....+....+..+..+-..+..++|-.+|++.+..+|+ +.++..+.-+.+.|- ..+|...+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~ 97 (578)
T PRK15490 24 LAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGL-AKDAQLIL 97 (578)
T ss_pred HHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhh-hhHHHHHH
Confidence 334444444444444444444555555556666666666666666666665 344444555555554 44444433
No 471
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=42.62 E-value=4.3e+02 Score=27.77 Aligned_cols=93 Identities=13% Similarity=0.135 Sum_probs=58.5
Q ss_pred hcHHHHHHHHHHHHhcC--CCCCchhhHHHHHHHHHHHhhhh--------------hcccchhHHHHHHHHHHHhhhCCc
Q psy8160 136 RKYKTAKDSYEQLLKED--DLPVHLKADICRQLGWMYHCIDT--------------LGEKSHRETLAIHCLQKSIEADPK 199 (324)
Q Consensus 136 ~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~~~--------------~~~~~~~~~~A~~~~~~al~~~~~ 199 (324)
..+++++.+|.++.... ..|.-...++..+.+.+...... ..... .-.++..++.+++.....
T Consensus 359 ~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~-~~~eI~~~l~~~~~~~l~ 437 (1185)
T PF08626_consen 359 DLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLSDNLDHIVKRPLTPTPNIS-SRSEIAEFLFKAFPLQLK 437 (1185)
T ss_pred HHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcccchhhhhccccccccCCC-CHHHHHHHHHHhhhhhhh
Confidence 35788999999987432 23555556788888877755320 00000 345677777777654432
Q ss_pred ------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy8160 200 ------SGQSLYLLGRCFAAVGKVHDAFLAYRNSVE 229 (324)
Q Consensus 200 ------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 229 (324)
....+..++.+|...|-..++-=+.+.++.
T Consensus 438 ~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~ 473 (1185)
T PF08626_consen 438 DLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAV 473 (1185)
T ss_pred hCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 136788899999999988776555555543
No 472
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=42.59 E-value=94 Score=20.19 Aligned_cols=12 Identities=17% Similarity=0.252 Sum_probs=7.7
Q ss_pred hccHHHHHHHHH
Q psy8160 64 NNEYDSALKHLT 75 (324)
Q Consensus 64 ~~~~~~A~~~~~ 75 (324)
.|+|++|+.+|.
T Consensus 19 ~g~y~eA~~~Y~ 30 (76)
T cd02681 19 EGRYSEAVFYYK 30 (76)
T ss_pred ccCHHHHHHHHH
Confidence 466666666666
No 473
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=42.56 E-value=8.2 Score=35.81 Aligned_cols=102 Identities=15% Similarity=0.017 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhCCccH-HHHHHHHHHHHHcCCHHHHHHHHHHHH--ccCCCC-HHHHHHhHHHHhhcCCCHHHHHHHH--
Q psy8160 186 AIHCLQKSIEADPKSG-QSLYLLGRCFAAVGKVHDAFLAYRNSV--EKSEGN-ADTWCSIGNKDFSNNSNREDYHQAL-- 259 (324)
Q Consensus 186 A~~~~~~al~~~~~~~-~~~~~lg~~~~~~~~~~~A~~~~~~al--~~~p~~-~~~~~~lg~~~~~~~~~~~~A~~~~-- 259 (324)
|..++.++-...+... .....-+..+...|++..|...+.+.- .+.|.. .......+.+....|+ +.+|+..+
T Consensus 8 A~~yL~~A~~a~~~~~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~-~~~Al~~L~~ 86 (536)
T PF04348_consen 8 AEQYLQQAQQASGEQRAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGD-PEQALSLLNA 86 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhcCcHhHHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCC-HHHHHHHhcc
Confidence 3344444444433222 333344567777777777777776554 222222 3334455667777777 77777766
Q ss_pred ------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhc
Q psy8160 260 ------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTS 290 (324)
Q Consensus 260 ------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~ 290 (324)
..+...+.++...|++-+ |...+-..-.+
T Consensus 87 ~~~~~l~~~~~~~~~~l~A~a~~~~~~~l~--Aa~~~i~l~~l 127 (536)
T PF04348_consen 87 QDLWQLPPEQQARYHQLRAQAYEQQGDPLA--AARERIALDPL 127 (536)
T ss_dssp -------------------------------------------
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCHHH--HHHHHHHHhhh
Confidence 344556667777777666 66655544443
No 474
>KOG4151|consensus
Probab=40.61 E-value=1.5e+02 Score=28.62 Aligned_cols=91 Identities=16% Similarity=0.166 Sum_probs=45.1
Q ss_pred HHHHHHhccHHHHHHHHHHHh-cCCCC----chhhHHHHHHHHhc--ccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q psy8160 58 GLMFKVNNEYDSALKHLTLCL-IDASP----CTFTKLEGLMFKVN--NEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH 130 (324)
Q Consensus 58 g~~~~~~~~~~~A~~~~~~al-~~~~~----~~~~~~la~~~~~~--~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~ 130 (324)
|...+..+++..+.--|..++ +-|.. .......+.++... |++..++.-.+-++...|... .++...+.
T Consensus 60 ~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~----~~Ll~r~~ 135 (748)
T KOG4151|consen 60 GNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRIS----KALLKRAR 135 (748)
T ss_pred hhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHH----HHHhhhhh
Confidence 455556666666655555555 43421 12222233333333 556666665555555444433 44555556
Q ss_pred HHHHhhcHHHHHHHHHHHHhcC
Q psy8160 131 LHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 131 ~~~~~~~~~~A~~~~~~al~~~ 152 (324)
+|...+.++-|+....-.....
T Consensus 136 ~y~al~k~d~a~rdl~i~~~~~ 157 (748)
T KOG4151|consen 136 KYEALNKLDLAVRDLRIVEKMD 157 (748)
T ss_pred HHHHHHHHHHHHHHHHHHhcCC
Confidence 6666666666655533333333
No 475
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=40.45 E-value=52 Score=16.64 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=10.7
Q ss_pred HHHHHHhhhCCccHHHHHHHH
Q psy8160 188 HCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 188 ~~~~~al~~~~~~~~~~~~lg 208 (324)
.+..+++..+|.+..+|...-
T Consensus 4 ~~~~~~l~~~pknys~W~yR~ 24 (31)
T PF01239_consen 4 EFTKKALEKDPKNYSAWNYRR 24 (31)
T ss_dssp HHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHCcccccHHHHHH
Confidence 344455555555555554443
No 476
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=40.19 E-value=1.3e+02 Score=21.00 Aligned_cols=48 Identities=13% Similarity=-0.015 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcC
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNN 249 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 249 (324)
.....-|.+-...|++..|.+...++-+..+..+-.+..-+..-...|
T Consensus 60 ~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 60 QRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 334556778888888888888888886664443333333344444333
No 477
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=40.04 E-value=4.7e+02 Score=27.49 Aligned_cols=73 Identities=8% Similarity=-0.013 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHhhhC----Ccc--HHHHHHHHHHHHHcC--------------------CHHHHHHHHHHHHccCCCC-
Q psy8160 182 RETLAIHCLQKSIEAD----PKS--GQSLYLLGRCFAAVG--------------------KVHDAFLAYRNSVEKSEGN- 234 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~----~~~--~~~~~~lg~~~~~~~--------------------~~~~A~~~~~~al~~~p~~- 234 (324)
.+++++.+|.++.... |.- .++....+..+.... .-.++..+..+++.....+
T Consensus 360 ~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l 439 (1185)
T PF08626_consen 360 LYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL 439 (1185)
T ss_pred HHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC
Confidence 5778888888886332 211 145555666666665 5666667777776554322
Q ss_pred -----HHHHHHhHHHHhhcCCCHHHH
Q psy8160 235 -----ADTWCSIGNKDFSNNSNREDY 255 (324)
Q Consensus 235 -----~~~~~~lg~~~~~~~~~~~~A 255 (324)
...+..++.+|...|- ..++
T Consensus 440 ~~~dqi~i~~~lA~vy~~lG~-~RK~ 464 (1185)
T PF08626_consen 440 SVEDQIRIYSGLASVYGSLGF-HRKK 464 (1185)
T ss_pred CHHHHHHHHHHHHHHHHhcch-hHHH
Confidence 3455666777777776 5443
No 478
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=39.79 E-value=9.6 Score=35.37 Aligned_cols=97 Identities=11% Similarity=-0.051 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-c--C-CCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-I--D-ASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVR 125 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~--~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 125 (324)
.....+.-+..+...|++..|...+.+.- . . ........+.|.+...+|++++|+..+... .............+
T Consensus 23 ~~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~-~~~~l~~~~~~~~~ 101 (536)
T PF04348_consen 23 RAQLLLLAARALLQEGDWAQAQALLNQLDPQQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQ-DLWQLPPEQQARYH 101 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccC-CcccCCHHHHHHHH
Confidence 44567777889999999999999998766 2 2 333445556799999999999999988742 11111111223455
Q ss_pred HHHHHHHHHhhcHHHHHHHHHH
Q psy8160 126 FHIAHLHEVQRKYKTAKDSYEQ 147 (324)
Q Consensus 126 ~~la~~~~~~~~~~~A~~~~~~ 147 (324)
...+.++...|++-+|...+-.
T Consensus 102 ~l~A~a~~~~~~~l~Aa~~~i~ 123 (536)
T PF04348_consen 102 QLRAQAYEQQGDPLAAARERIA 123 (536)
T ss_dssp ----------------------
T ss_pred HHHHHHHHhcCCHHHHHHHHHH
Confidence 5668888888988887765443
No 479
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=38.57 E-value=2.2e+02 Score=23.26 Aligned_cols=59 Identities=8% Similarity=-0.021 Sum_probs=31.3
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH-hhcHHHHHHHHHHHH
Q psy8160 88 KLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEV-QRKYKTAKDSYEQLL 149 (324)
Q Consensus 88 ~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al 149 (324)
..+|.+....|+|++.+.+.++++.. ...++ .+-...++.+|.. .|..-.+...+....
T Consensus 5 i~~Aklaeq~eRy~dmv~~mk~~~~~--~~eLt-~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 5 IYLAKLAEQAERYDDMVEYMKQLIEM--NPELT-EEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHT--SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHcc--CCCCC-HHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 34677777777777777777777765 22222 2334444444433 244444444444433
No 480
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=37.97 E-value=2.7e+02 Score=24.22 Aligned_cols=35 Identities=11% Similarity=0.016 Sum_probs=29.6
Q ss_pred HHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhh
Q psy8160 261 KYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHI 297 (324)
Q Consensus 261 ~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 297 (324)
.+.-.|.++.+.|+.++ |-..|++|+.+.++...-
T Consensus 367 ~h~~RadlL~rLgr~~e--Ar~aydrAi~La~~~aer 401 (415)
T COG4941 367 YHAARADLLARLGRVEE--ARAAYDRAIALARNAAER 401 (415)
T ss_pred cHHHHHHHHHHhCChHH--HHHHHHHHHHhcCChHHH
Confidence 44567889999999999 999999999999876543
No 481
>KOG4056|consensus
Probab=37.25 E-value=93 Score=22.86 Aligned_cols=30 Identities=17% Similarity=0.350 Sum_probs=22.3
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHh-cCCCCc
Q psy8160 55 LRLGLMFKVNNEYDSALKHLTLCL-IDASPC 84 (324)
Q Consensus 55 ~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~ 84 (324)
..+|.-++.+|+++++..+|-.|| ..|...
T Consensus 85 v~lGE~L~~qg~~e~ga~h~~nAi~vcgqpa 115 (143)
T KOG4056|consen 85 VQLGEELLAQGNEEEGAEHLANAIVVCGQPA 115 (143)
T ss_pred HHhHHHHHHccCHHHHHHHHHHHHhhcCCHH
Confidence 467888888888888888888777 555443
No 482
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=37.09 E-value=2.6e+02 Score=23.77 Aligned_cols=133 Identities=8% Similarity=0.079 Sum_probs=81.4
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHh--cCCCC-----chhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHH---
Q psy8160 55 LRLGLMFKVNNEYDSALKHLTLCL--IDASP-----CTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEV--- 124 (324)
Q Consensus 55 ~~lg~~~~~~~~~~~A~~~~~~al--~~~~~-----~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~--- 124 (324)
+..|..-.....-++-++.+.+.+ ...++ ..++..+|..|.+.++.+.+.+...+.+........ +.++
T Consensus 79 fD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~-KiDv~l~ 157 (412)
T COG5187 79 FDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGL-KIDVFLC 157 (412)
T ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccc-chhhHHH
Confidence 333433333344455566665555 22333 356677899999999999999998888766444332 2233
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh---hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc
Q psy8160 125 RFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK---ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK 199 (324)
Q Consensus 125 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 199 (324)
...+|.+|....-.++.++.....++.. .+... ..++.++-.+.. .++.+|-..+...+.....
T Consensus 158 kiRlg~~y~d~~vV~e~lE~~~~~iEkG--gDWeRrNRyK~Y~Gi~~m~~---------RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 158 KIRLGLIYGDRKVVEESLEVADDIIEKG--GDWERRNRYKVYKGIFKMMR---------RNFKEAAILLSDILPTFES 224 (412)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHhC--CCHHhhhhHHHHHHHHHHHH---------HhhHHHHHHHHHHhccccc
Confidence 3456777777766777777777777765 32211 234444433333 3788888888888765543
No 483
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=35.23 E-value=2.2e+02 Score=28.86 Aligned_cols=127 Identities=11% Similarity=0.035 Sum_probs=74.9
Q ss_pred HHHHHHhhhCCccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHccCCCCHHH-HHHhHHHHhhcCCCHHHHHHHHHHHHh
Q psy8160 188 HCLQKSIEADPKSGQSLYLLGRCFAAVG--KVHDAFLAYRNSVEKSEGNADT-WCSIGNKDFSNNSNREDYHQALNKYRD 264 (324)
Q Consensus 188 ~~~~~al~~~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~p~~~~~-~~~lg~~~~~~~~~~~~A~~~~~~~~~ 264 (324)
..+.++++..+.....+..+=.+|...+ ++++|+....+..+.++...+- ...+..+---..- |+.|+-.|+.-..
T Consensus 799 dair~~l~~~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~alkyl~fLvDvn~L-y~~ALG~YDl~La 877 (928)
T PF04762_consen 799 DAIRKALEKPKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEEALKYLCFLVDVNKL-YDVALGTYDLELA 877 (928)
T ss_pred HHHHHHhcccccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHHHHhHheeeccHHHH-HHHHhhhcCHHHH
Confidence 3344455434444555566667777777 8888888887776664433221 1112111111122 5555555544445
Q ss_pred hHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhhcC
Q psy8160 265 LGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRDLG 323 (324)
Q Consensus 265 lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~ 323 (324)
+-.+-..+.++.+ =+.++++.-++.|.. -+...+ .-.+.|.+|+..+..+|
T Consensus 878 l~VAq~SQkDPKE--YLPfL~~L~~l~~~~--rry~ID----~hLkRy~kAL~~L~~~G 928 (928)
T PF04762_consen 878 LMVAQQSQKDPKE--YLPFLQELQKLPPLY--RRYKID----DHLKRYEKALRHLSACG 928 (928)
T ss_pred HHHHHHhccChHH--HHHHHHHHHhCChhh--eeeeHh----hhhCCHHHHHHHHHhhC
Confidence 5555667778888 888888877766542 222232 34688999999998887
No 484
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=35.22 E-value=71 Score=28.18 Aligned_cols=51 Identities=20% Similarity=0.216 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHHHHhcCCCc-ccHHHHHHHHHHHHHHh-----hcHHHHHHHHHHHH
Q psy8160 99 EYDSALKHLTLCLIDASPCT-FTKLEVRFHIAHLHEVQ-----RKYKTAKDSYEQLL 149 (324)
Q Consensus 99 ~~~~A~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~~-----~~~~~A~~~~~~al 149 (324)
-...|+++++++.....|.. ...++++..+|.+|... +-|.+|..++.+|-
T Consensus 333 l~~~Al~yL~kA~d~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN 389 (404)
T PF12753_consen 333 LIKKALEYLKKAQDEDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKAN 389 (404)
T ss_dssp HHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHh
Confidence 45678888888876544432 24444555555544322 22555555555553
No 485
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.72 E-value=98 Score=28.20 Aligned_cols=49 Identities=14% Similarity=0.032 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHH
Q psy8160 54 HLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDS 102 (324)
Q Consensus 54 ~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~ 102 (324)
...+|.-.+..|+|.-+.+.+.+++ .||.+..+..+.+..+.+.|--.+
T Consensus 455 Vl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE 504 (655)
T COG2015 455 VLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAE 504 (655)
T ss_pred HHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhc
Confidence 4567788889999999999999999 999999999999999888874433
No 486
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=31.99 E-value=1.5e+02 Score=19.29 Aligned_cols=13 Identities=15% Similarity=0.253 Sum_probs=8.5
Q ss_pred HhccHHHHHHHHH
Q psy8160 63 VNNEYDSALKHLT 75 (324)
Q Consensus 63 ~~~~~~~A~~~~~ 75 (324)
..|++++|+.+|.
T Consensus 18 ~~g~y~eAl~~Y~ 30 (77)
T cd02683 18 QEGRFQEALVCYQ 30 (77)
T ss_pred HhccHHHHHHHHH
Confidence 4566666666666
No 487
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=31.84 E-value=3.7e+02 Score=23.89 Aligned_cols=58 Identities=14% Similarity=-0.085 Sum_probs=41.0
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCCcc-cHHHHHHHHHHHH--HHhhcHHHHHHHHHH
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTF-TKLEVRFHIAHLH--EVQRKYKTAKDSYEQ 147 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~-~~~~~~~~la~~~--~~~~~~~~A~~~~~~ 147 (324)
.+..+...++|..|...|++++...+.... .....+..+..+| +..-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 355777889999999999999877543222 2334555565555 455688999999986
No 488
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=30.57 E-value=89 Score=23.38 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=24.4
Q ss_pred HHHHHHHHHhc-cHHHHHHHHHHHh-cCCCCch
Q psy8160 55 LRLGLMFKVNN-EYDSALKHLTLCL-IDASPCT 85 (324)
Q Consensus 55 ~~lg~~~~~~~-~~~~A~~~~~~al-~~~~~~~ 85 (324)
..+|..+...| +.+++..+|-+|| ..|....
T Consensus 94 V~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~ 126 (148)
T TIGR00985 94 VQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQ 126 (148)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHH
Confidence 46888888888 8889999998888 6666543
No 489
>KOG1938|consensus
Probab=30.48 E-value=5.2e+02 Score=26.05 Aligned_cols=118 Identities=16% Similarity=0.146 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCch-----------------------h
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCT-----------------------F 86 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~-----------------------~ 86 (324)
+.|+..|....+..+. +....+..+.++...+.+.+|.+.+-+.. .+++.-. .
T Consensus 241 e~a~~~~~~i~k~~~~---A~rc~l~~aei~k~~~lh~eaa~~~~r~~see~dl~~allleqaal~f~~tkp~m~~ktff 317 (960)
T KOG1938|consen 241 ENAFPLYRLILKNYQD---ANRCVLNSAEILKFLGLHKEAAEALARETSEEGDLLSALLLEQAALCFGSTKPPMPRKTFF 317 (960)
T ss_pred hhhhHHHHHHHhhccc---hhhhccCchHHHHHHHHHHHHHHHHHHhhCcCchhhhHHHHHHHHHHhhcCCCCccchhhc
Confidence 5666777777766332 23333444445555555555444444443 3222111 1
Q ss_pred hHH-HHHHHHhcccHHHHHHHHHHHHHhcCCCcc--cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC
Q psy8160 87 TKL-EGLMFKVNNEYDSALKHLTLCLIDASPCTF--TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 87 ~~~-la~~~~~~~~~~~A~~~~~~~l~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 152 (324)
+.. -+..+...|....|+.+|.+++...+.... .....++.++..|. ....+.|-..+.+.+...
T Consensus 318 HpVLal~r~s~anqp~ha~R~y~~ai~v~~~~~ws~~edh~~f~i~~~y~-l~~~D~a~~~f~~~i~~~ 385 (960)
T KOG1938|consen 318 HPVLALIRFSSANQPKHALRCYRQAIPVLKKPTWSFAEDHLYFTILHVYL-LCQEDDADEEFSKLIADC 385 (960)
T ss_pred ceeehhhhcccCCChhHHHHHHHHHhhhcCCCCcchhHHhHHHhHHHhhh-hhcchhHHHHHHHHHhhh
Confidence 111 255555667788888888888876555443 33445666676433 333455666666666543
No 490
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=29.94 E-value=2.4e+02 Score=21.23 Aligned_cols=50 Identities=6% Similarity=-0.045 Sum_probs=34.5
Q ss_pred HHHHhHHHHhhcCCCHHHHHHHH-------------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhh
Q psy8160 237 TWCSIGNKDFSNNSNREDYHQAL-------------------NKYRDLGDFLVINNIPTSNNNRQCYNSYST 289 (324)
Q Consensus 237 ~~~~lg~~~~~~~~~~~~A~~~~-------------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~ 289 (324)
....-+.-..+.|+ ...|.+.+ ......+..+...|++.+ |...+..+++
T Consensus 77 ~ai~~a~~~l~~g~-~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~e--A~~aL~~A~~ 145 (155)
T PF10938_consen 77 AAIKTANELLKKGD-KQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYE--ANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHH--HHHHHHHHhc
Confidence 34455666777888 88888777 445566777778888888 8888887764
No 491
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=29.93 E-value=2.8e+02 Score=21.84 Aligned_cols=21 Identities=24% Similarity=0.267 Sum_probs=10.1
Q ss_pred hhHHHHHHHHHHHhhhCCccHH
Q psy8160 181 HRETLAIHCLQKSIEADPKSGQ 202 (324)
Q Consensus 181 ~~~~~A~~~~~~al~~~~~~~~ 202 (324)
|.+++|.+.+++..+ +|++..
T Consensus 125 g~Fk~A~eiLkr~~~-d~~~~~ 145 (200)
T cd00280 125 GEFKKAEEVLKRLFS-DPESQK 145 (200)
T ss_pred CchHHHHHHHHHHhc-CCCchh
Confidence 355555555555544 444443
No 492
>PF13934 ELYS: Nuclear pore complex assembly
Probab=29.69 E-value=3e+02 Score=22.25 Aligned_cols=101 Identities=15% Similarity=0.122 Sum_probs=56.3
Q ss_pred HHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCC-chhhHHHHHHHHhcccHHHHHHHHHHHH
Q psy8160 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASP-CTFTKLEGLMFKVNNEYDSALKHLTLCL 111 (324)
Q Consensus 33 A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~la~~~~~~~~~~~A~~~~~~~l 111 (324)
+.+.|.....+.|.+ ..+-.|..+...+++++|+..+. +|+- .........++..+|+.+.|+.+++..
T Consensus 65 ~~~~Fa~~f~ip~~~-----~~~~~g~W~LD~~~~~~A~~~L~----~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~- 134 (226)
T PF13934_consen 65 LAESFARAFGIPPKY-----IKFIQGFWLLDHGDFEEALELLS----HPSLIPWFPDKILQALLRRGDPKLALRYLRAV- 134 (226)
T ss_pred HHHHHHHHhCCCHHH-----HHHHHHHHHhChHhHHHHHHHhC----CCCCCcccHHHHHHHHHHCCChhHHHHHHHhc-
Confidence 455555555555322 45667888888899999998886 4432 222333455555679999999877643
Q ss_pred HhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy8160 112 IDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQL 148 (324)
Q Consensus 112 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 148 (324)
.|+.... +.....-.. ...+...+|..+-+..
T Consensus 135 --~p~l~s~--~~~~~~~~~-La~~~v~EAf~~~R~~ 166 (226)
T PF13934_consen 135 --GPPLSSP--EALTLYFVA-LANGLVTEAFSFQRSY 166 (226)
T ss_pred --CCCCCCH--HHHHHHHHH-HHcCCHHHHHHHHHhC
Confidence 1222111 222222112 4446666666655543
No 493
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=29.35 E-value=2.8e+02 Score=21.78 Aligned_cols=76 Identities=7% Similarity=-0.118 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHhhhCCccH----H----HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHH
Q psy8160 182 RETLAIHCLQKSIEADPKSG----Q----SLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNRE 253 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~----~----~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~ 253 (324)
-.+-|+..++..-+-.|... . .-...-.++++.|.+++|.+.+++... +|++......|..+-...+. +.
T Consensus 84 PLESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~-~h 161 (200)
T cd00280 84 PLESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDP-AH 161 (200)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHcccc-cc
Confidence 35567766666554443321 1 112234678999999999999999988 88888877778877777777 66
Q ss_pred HHHHHH
Q psy8160 254 DYHQAL 259 (324)
Q Consensus 254 ~A~~~~ 259 (324)
.-++.|
T Consensus 162 ~~lqnF 167 (200)
T cd00280 162 PVLQNF 167 (200)
T ss_pred HHHHhc
Confidence 666655
No 494
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=28.97 E-value=1.2e+02 Score=17.18 Aligned_cols=29 Identities=7% Similarity=-0.082 Sum_probs=17.8
Q ss_pred HHHHh-cCCCCchhhHHHHHHHHhcccHHH
Q psy8160 74 LTLCL-IDASPCTFTKLEGLMFKVNNEYDS 102 (324)
Q Consensus 74 ~~~al-~~~~~~~~~~~la~~~~~~~~~~~ 102 (324)
|..+| .+|.+...+...|.-+..+|+...
T Consensus 5 ll~AI~~~P~ddt~RLvYADWL~e~gdp~r 34 (42)
T TIGR02996 5 LLRAILAHPDDDTPRLVYADWLDEHGDPAR 34 (42)
T ss_pred HHHHHHhCCCCcchHHHHHHHHHHcCCHHH
Confidence 44555 666666666666666666666543
No 495
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=28.88 E-value=1.6e+02 Score=18.77 Aligned_cols=15 Identities=20% Similarity=0.348 Sum_probs=8.5
Q ss_pred HHHhccHHHHHHHHH
Q psy8160 61 FKVNNEYDSALKHLT 75 (324)
Q Consensus 61 ~~~~~~~~~A~~~~~ 75 (324)
+-..|++++|+.+|.
T Consensus 18 ~d~~g~~~eAl~~Y~ 32 (77)
T smart00745 18 ADEAGDYEEALELYK 32 (77)
T ss_pred HHHcCCHHHHHHHHH
Confidence 334566666666665
No 496
>KOG1920|consensus
Probab=28.10 E-value=7e+02 Score=25.96 Aligned_cols=60 Identities=23% Similarity=0.131 Sum_probs=31.8
Q ss_pred HHHHHhcccHHHHHHHHHHHHH------hcCCCcccHHHHH---HHHHHHHHHhhcHHHHHHHHHHHHh
Q psy8160 91 GLMFKVNNEYDSALKHLTLCLI------DASPCTFTKLEVR---FHIAHLHEVQRKYKTAKDSYEQLLK 150 (324)
Q Consensus 91 a~~~~~~~~~~~A~~~~~~~l~------~~~~~~~~~~~~~---~~la~~~~~~~~~~~A~~~~~~al~ 150 (324)
|..|...|+.++|++.|+.+.. ..........++. ..|+.-+..++++-+|-+.....+.
T Consensus 959 al~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 959 ALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 5566667777777777776521 1110111111233 4455555666777777666655543
No 497
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=28.01 E-value=2.5e+02 Score=24.42 Aligned_cols=30 Identities=0% Similarity=-0.036 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHhcccHHHHHHHHHHHHHhc
Q psy8160 85 TFTKLEGLMFKVNNEYDSALKHLTLCLIDA 114 (324)
Q Consensus 85 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 114 (324)
..|..+|.+...+|.++..+..|++|+...
T Consensus 141 KYWIC~Arl~~~~~~~e~vi~iyEeAi~ag 170 (353)
T PF15297_consen 141 KYWICLARLEPRTGPIEDVIAIYEEAILAG 170 (353)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Confidence 355566666666777777777777776543
No 498
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.71 E-value=2.1e+02 Score=19.83 Aligned_cols=51 Identities=14% Similarity=0.036 Sum_probs=38.2
Q ss_pred HHHHHHHhhhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH
Q psy8160 187 IHCLQKSIEAD-PKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADT 237 (324)
Q Consensus 187 ~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 237 (324)
.+.++++-..+ +--|-..-.||.+|...|+.+.|...|+.--.+.|.+...
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~f 108 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVF 108 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhH
Confidence 34555554333 3334667789999999999999999999988899987643
No 499
>KOG1938|consensus
Probab=27.56 E-value=6.5e+02 Score=25.40 Aligned_cols=166 Identities=12% Similarity=0.100 Sum_probs=81.0
Q ss_pred HHHHHHhccHHHHHHHHHHHhcCCCCchhhHH-------HHHHHHhcccH--------HHHHHHHHHHHHhcCCCcccHH
Q psy8160 58 GLMFKVNNEYDSALKHLTLCLIDASPCTFTKL-------EGLMFKVNNEY--------DSALKHLTLCLIDASPCTFTKL 122 (324)
Q Consensus 58 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-------la~~~~~~~~~--------~~A~~~~~~~l~~~~~~~~~~~ 122 (324)
+..++.-|.+..|...|.....|+.+..++.. .+.-+..+.+- +.|...|...++..+...
T Consensus 183 aD~~~~f~h~~~a~~~y~stkrd~~nd~am~~~a~alEm~sls~Fvq~~a~q~~sqyme~a~~~~~~i~k~~~~A~---- 258 (960)
T KOG1938|consen 183 ADLLFMFGHPNLAFDAYHSTKRDFNNDKAMVYYAGALEMRSLSAFVQPDATQFPSQYMENAFPLYRLILKNYQDAN---- 258 (960)
T ss_pred cchhhhhccccchhhhhhhhhcchhhhhHHhHhhhhhhhhhhhhhcCCcchhhHHHHHhhhhHHHHHHHhhccchh----
Confidence 33344445555566666655544444433322 12222222222 334555555544411111
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhh----------------hhcccchhHHHH
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCID----------------TLGEKSHRETLA 186 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~----------------~~~~~~~~~~~A 186 (324)
...+..+.++...+.+.+|.+.+-+....+ ++...+-.+...+.++.... ... .-+....|
T Consensus 259 rc~l~~aei~k~~~lh~eaa~~~~r~~see--~dl~~allleqaal~f~~tkp~m~~ktffHpVLal~r~s-~anqp~ha 335 (960)
T KOG1938|consen 259 RCVLNSAEILKFLGLHKEAAEALARETSEE--GDLLSALLLEQAALCFGSTKPPMPRKTFFHPVLALIRFS-SANQPKHA 335 (960)
T ss_pred hhccCchHHHHHHHHHHHHHHHHHHhhCcC--chhhhHHHHHHHHHHhhcCCCCccchhhcceeehhhhcc-cCCChhHH
Confidence 344455777777777777777776666555 43322333334444442100 001 12236778
Q ss_pred HHHHHHHhhhCCccH------HHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q psy8160 187 IHCLQKSIEADPKSG------QSLYLLGRCFAAVGKVHDAFLAYRNSVEKS 231 (324)
Q Consensus 187 ~~~~~~al~~~~~~~------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 231 (324)
+.+|..++...+... ..++.++..|.-. ..++|-..+.+.+...
T Consensus 336 ~R~y~~ai~v~~~~~ws~~edh~~f~i~~~y~l~-~~D~a~~~f~~~i~~~ 385 (960)
T KOG1938|consen 336 LRCYRQAIPVLKKPTWSFAEDHLYFTILHVYLLC-QEDDADEEFSKLIADC 385 (960)
T ss_pred HHHHHHHhhhcCCCCcchhHHhHHHhHHHhhhhh-cchhHHHHHHHHHhhh
Confidence 888888887665432 3455566633322 3455666666665433
No 500
>PF07378 FlbT: Flagellar protein FlbT; InterPro: IPR009967 This family consists of several FlbT proteins. FlbT is a post-transcriptional repressor function in flagellum biogenesis. FlbT is associated with the 5' untranslated region (UTR) of fljK (25 kDa flagellin) mRNA and that this association requires a predicted loop structure in the transcript. Mutations within this loop abolish FlbT association and result in increased mRNA stability. It is therefore thought that FlbT promotes the degradation of flagellin mRNA by associating with the 5' UTR [].; GO: 0048027 mRNA 5'-UTR binding, 0006402 mRNA catabolic process, 0045718 negative regulation of flagellum assembly
Probab=27.02 E-value=67 Score=23.27 Aligned_cols=61 Identities=15% Similarity=0.124 Sum_probs=38.5
Q ss_pred HHHHhhHHHHHHcCCCCcchHHHHHHHhhh-cC--CChhhhhhchhhh-ccCChhhHHHHHHHHhhc
Q psy8160 260 NKYRDLGDFLVINNIPTSNNNRQCYNSYST-SI--ASCKHINNNKDFS-NNSNREDYHQALNKYRDL 322 (324)
Q Consensus 260 ~~~~~lg~~~~~~~~~~~~~A~~~~~~al~-~~--p~~~~~~~~l~~~-~~~~~~~~~~a~~~~~~~ 322 (324)
.+|+-+-.+|..-.+.++ +...|...+. +. ..+|.+...+... .....|+|.+|+...|.|
T Consensus 53 rlYf~vQ~m~i~~~~~~~--~~~~~~~~~~~l~~~~~~p~~~~~l~~~~~~v~~g~~y~ALk~~R~L 117 (126)
T PF07378_consen 53 RLYFAVQLMYIDPEDADE--ARDLYRRLLEELLQAFADPDAREGLDEANELVEAGRYYKALKALRKL 117 (126)
T ss_pred HHHHHHHHHHcCCcChHH--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHCCcHHHHHHHHHHh
Confidence 556666666665556666 6666655543 22 4456666665543 236678999999988765
Done!