Query psy8160
Match_columns 324
No_of_seqs 297 out of 1801
Neff 10.8
Searched_HMMs 29240
Date Fri Aug 16 20:08:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8160.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8160hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1w3b_A UDP-N-acetylglucosamine 100.0 6.9E-35 2.3E-39 255.2 29.8 291 9-321 60-364 (388)
2 1w3b_A UDP-N-acetylglucosamine 100.0 3.1E-34 1.1E-38 251.0 30.5 295 6-322 23-331 (388)
3 3hym_B Cell division cycle pro 100.0 7.2E-32 2.5E-36 230.0 30.0 278 7-305 13-314 (330)
4 3ieg_A DNAJ homolog subfamily 100.0 8.5E-32 2.9E-36 232.0 29.4 284 16-321 3-331 (359)
5 2y4t_A DNAJ homolog subfamily 100.0 1.7E-31 5.7E-36 237.9 26.8 299 5-321 15-354 (450)
6 3ieg_A DNAJ homolog subfamily 100.0 1.6E-30 5.5E-35 224.0 31.6 279 5-304 26-349 (359)
7 2y4t_A DNAJ homolog subfamily 100.0 2.7E-30 9.3E-35 230.0 30.6 277 5-302 49-370 (450)
8 1fch_A Peroxisomal targeting s 100.0 7.3E-31 2.5E-35 227.5 23.3 270 31-320 42-354 (368)
9 3hym_B Cell division cycle pro 100.0 1.4E-29 4.6E-34 215.9 28.7 254 50-322 21-296 (330)
10 4eqf_A PEX5-related protein; a 100.0 4.7E-30 1.6E-34 222.5 23.4 245 32-294 45-314 (365)
11 3fp2_A TPR repeat-containing p 100.0 2.5E-29 8.6E-34 228.6 28.3 294 5-321 48-487 (537)
12 4eqf_A PEX5-related protein; a 100.0 1.4E-29 4.9E-34 219.5 24.1 256 19-289 68-355 (365)
13 2h6f_A Protein farnesyltransfe 100.0 6.2E-30 2.1E-34 222.0 21.4 236 50-303 96-361 (382)
14 3u4t_A TPR repeat-containing p 100.0 5.8E-29 2E-33 206.6 26.0 241 51-305 3-265 (272)
15 1fch_A Peroxisomal targeting s 100.0 5.2E-29 1.8E-33 215.9 26.3 260 17-292 65-361 (368)
16 3fp2_A TPR repeat-containing p 100.0 1.6E-29 5.4E-34 229.9 23.8 287 16-321 25-453 (537)
17 2xpi_A Anaphase-promoting comp 100.0 1.2E-28 4.2E-33 227.1 29.9 250 31-301 322-590 (597)
18 2xpi_A Anaphase-promoting comp 100.0 1.2E-28 4.1E-33 227.1 29.6 269 31-322 289-576 (597)
19 2gw1_A Mitochondrial precursor 100.0 7.1E-29 2.4E-33 224.2 26.4 289 15-321 38-440 (514)
20 3cv0_A Peroxisome targeting si 100.0 9.2E-29 3.2E-33 210.5 23.2 259 17-296 22-321 (327)
21 2pl2_A Hypothetical conserved 100.0 1.6E-28 5.5E-33 197.6 23.3 194 49-259 3-208 (217)
22 3cv0_A Peroxisome targeting si 100.0 2.4E-28 8.1E-33 208.0 25.6 253 50-321 20-311 (327)
23 2gw1_A Mitochondrial precursor 100.0 1.4E-28 4.6E-33 222.4 22.0 255 31-304 206-492 (514)
24 3uq3_A Heat shock protein STI1 100.0 1.7E-27 5.9E-32 195.7 25.6 231 50-303 4-255 (258)
25 4g1t_A Interferon-induced prot 100.0 2.1E-27 7.3E-32 212.7 25.2 288 20-321 55-397 (472)
26 2h6f_A Protein farnesyltransfe 100.0 3.1E-27 1E-31 205.1 20.8 235 19-272 100-366 (382)
27 4g1t_A Interferon-induced prot 100.0 2.6E-27 8.7E-32 212.2 20.2 258 31-302 155-471 (472)
28 2pl2_A Hypothetical conserved 100.0 2.1E-26 7.1E-31 185.2 22.2 205 81-321 2-210 (217)
29 3mkr_A Coatomer subunit epsilo 99.9 4.3E-25 1.5E-29 185.4 25.8 259 31-320 16-289 (291)
30 3vtx_A MAMA; tetratricopeptide 99.9 1.1E-25 3.9E-30 176.0 20.3 177 50-243 4-181 (184)
31 3uq3_A Heat shock protein STI1 99.9 4.9E-25 1.7E-29 181.0 23.9 221 16-264 5-235 (258)
32 3u4t_A TPR repeat-containing p 99.9 3.3E-25 1.1E-29 183.9 22.4 225 15-259 2-244 (272)
33 2q7f_A YRRB protein; TPR, prot 99.9 1.8E-25 6.1E-30 182.2 20.5 214 50-304 22-236 (243)
34 3sf4_A G-protein-signaling mod 99.9 7.4E-26 2.5E-30 198.3 18.7 264 20-293 13-339 (406)
35 4abn_A Tetratricopeptide repea 99.9 2.9E-25 9.9E-30 199.0 22.6 216 31-259 85-315 (474)
36 3ro2_A PINS homolog, G-protein 99.9 8.1E-26 2.8E-30 192.5 17.6 264 21-294 10-336 (338)
37 4a1s_A PINS, partner of inscut 99.9 1.3E-25 4.3E-30 197.6 17.8 254 31-294 65-376 (411)
38 1ouv_A Conserved hypothetical 99.9 8.3E-24 2.8E-28 175.9 27.6 227 50-299 5-260 (273)
39 3vtx_A MAMA; tetratricopeptide 99.9 1E-24 3.5E-29 170.5 20.0 174 83-297 4-177 (184)
40 2q7f_A YRRB protein; TPR, prot 99.9 1.4E-24 4.8E-29 176.9 20.7 219 13-249 20-241 (243)
41 2ho1_A Type 4 fimbrial biogene 99.9 3.5E-24 1.2E-28 175.8 23.1 210 51-301 37-249 (252)
42 2vq2_A PILW, putative fimbrial 99.9 8.2E-24 2.8E-28 170.1 23.7 215 48-301 5-222 (225)
43 1xnf_A Lipoprotein NLPI; TPR, 99.9 3.4E-24 1.2E-28 177.9 20.3 246 31-319 22-269 (275)
44 3sf4_A G-protein-signaling mod 99.9 2E-24 6.9E-29 189.1 19.4 259 50-321 8-332 (406)
45 4i17_A Hypothetical protein; T 99.9 2.4E-24 8.1E-29 174.4 18.1 202 52-304 8-223 (228)
46 4a1s_A PINS, partner of inscut 99.9 1.2E-24 4.3E-29 191.2 17.3 261 50-321 47-368 (411)
47 1xnf_A Lipoprotein NLPI; TPR, 99.9 6.6E-24 2.2E-28 176.2 20.2 222 14-259 41-269 (275)
48 4abn_A Tetratricopeptide repea 99.9 4.2E-24 1.5E-28 191.5 20.4 212 64-287 81-318 (474)
49 4i17_A Hypothetical protein; T 99.9 1.4E-23 4.7E-28 169.9 21.4 186 13-247 4-226 (228)
50 3ro2_A PINS homolog, G-protein 99.9 7.1E-24 2.4E-28 180.4 17.9 260 51-321 5-328 (338)
51 2xm6_A Protein corresponding t 99.9 4.4E-22 1.5E-26 179.4 28.3 246 31-304 168-449 (490)
52 3ulq_A Response regulator aspa 99.9 3.6E-23 1.2E-27 180.5 20.2 231 53-293 105-371 (383)
53 2xm6_A Protein corresponding t 99.9 6.8E-22 2.3E-26 178.1 29.1 260 31-321 132-428 (490)
54 2ho1_A Type 4 fimbrial biogene 99.9 2.3E-22 8E-27 164.8 22.7 207 17-241 38-249 (252)
55 2ond_A Cleavage stimulation fa 99.9 4.5E-22 1.6E-26 168.5 24.4 211 31-259 33-264 (308)
56 2vq2_A PILW, putative fimbrial 99.9 6.9E-22 2.4E-26 158.7 24.3 212 14-241 6-222 (225)
57 4gyw_A UDP-N-acetylglucosamine 99.9 3.1E-23 1.1E-27 193.2 18.2 172 48-234 6-178 (723)
58 4gyw_A UDP-N-acetylglucosamine 99.9 6.8E-23 2.3E-27 190.9 19.9 156 80-250 5-160 (723)
59 3nf1_A KLC 1, kinesin light ch 99.9 1.8E-23 6.1E-28 176.5 14.6 239 45-293 21-310 (311)
60 3mkr_A Coatomer subunit epsilo 99.9 5.3E-22 1.8E-26 166.6 22.6 214 21-259 39-258 (291)
61 3qky_A Outer membrane assembly 99.9 6.7E-22 2.3E-26 163.3 20.8 194 50-254 14-250 (261)
62 1ouv_A Conserved hypothetical 99.9 3.6E-21 1.2E-25 159.9 24.3 219 14-259 4-245 (273)
63 3q15_A PSP28, response regulat 99.9 1.4E-21 4.9E-26 170.2 21.6 232 53-293 103-368 (378)
64 3ulq_A Response regulator aspa 99.9 1.4E-21 4.6E-26 170.6 20.0 293 17-321 11-364 (383)
65 1qqe_A Vesicular transport pro 99.9 1.5E-21 5.2E-26 164.0 17.0 214 66-302 32-281 (292)
66 3e4b_A ALGK; tetratricopeptide 99.9 1.1E-20 3.9E-25 168.2 23.0 178 123-321 142-347 (452)
67 3urz_A Uncharacterized protein 99.9 2.4E-21 8.1E-26 154.6 16.7 159 123-295 5-191 (208)
68 2ooe_A Cleavage stimulation fa 99.9 4.9E-20 1.7E-24 167.6 27.5 279 4-294 1-389 (530)
69 4ga2_A E3 SUMO-protein ligase 99.9 4.3E-22 1.5E-26 150.3 10.7 146 90-250 3-149 (150)
70 3dra_A Protein farnesyltransfe 99.9 4.1E-20 1.4E-24 154.6 23.4 216 68-301 50-299 (306)
71 3urz_A Uncharacterized protein 99.9 1E-20 3.4E-25 150.9 18.8 179 51-244 4-199 (208)
72 3as5_A MAMA; tetratricopeptide 99.9 2.2E-20 7.4E-25 145.2 19.6 172 50-236 7-179 (186)
73 3qky_A Outer membrane assembly 99.9 1.1E-20 3.9E-25 155.9 18.5 206 79-303 10-237 (261)
74 4ga2_A E3 SUMO-protein ligase 99.9 1.4E-21 4.7E-26 147.5 10.9 141 127-304 2-143 (150)
75 2pzi_A Probable serine/threoni 99.9 8.1E-21 2.8E-25 177.4 17.7 189 79-289 389-597 (681)
76 2pzi_A Probable serine/threoni 99.9 1.1E-20 3.8E-25 176.5 16.8 182 50-250 393-583 (681)
77 1qqe_A Vesicular transport pro 99.8 4.5E-20 1.5E-24 155.0 17.9 198 52-259 38-263 (292)
78 3e4b_A ALGK; tetratricopeptide 99.8 1.7E-18 5.7E-23 154.2 29.0 276 15-319 68-415 (452)
79 2ond_A Cleavage stimulation fa 99.8 5.9E-19 2E-23 149.3 24.7 215 4-236 38-276 (308)
80 1hz4_A MALT regulatory protein 99.8 8.8E-19 3E-23 152.1 24.9 253 31-293 31-325 (373)
81 3nf1_A KLC 1, kinesin light ch 99.8 2.2E-20 7.6E-25 157.4 14.3 231 80-321 23-303 (311)
82 3dra_A Protein farnesyltransfe 99.8 1.2E-18 4.1E-23 145.8 24.1 216 31-259 50-281 (306)
83 3as5_A MAMA; tetratricopeptide 99.8 1.4E-19 4.9E-24 140.5 17.5 171 86-297 10-180 (186)
84 3q15_A PSP28, response regulat 99.8 2.5E-19 8.4E-24 156.0 20.9 216 31-259 118-359 (378)
85 2yhc_A BAMD, UPF0169 lipoprote 99.8 1.1E-18 3.6E-23 140.9 22.2 173 51-233 4-216 (225)
86 3edt_B KLC 2, kinesin light ch 99.8 1.2E-19 4E-24 150.6 15.4 202 49-291 41-282 (283)
87 2yhc_A BAMD, UPF0169 lipoprote 99.8 3.8E-18 1.3E-22 137.6 20.7 183 84-295 4-218 (225)
88 3edt_B KLC 2, kinesin light ch 99.8 3.3E-19 1.1E-23 147.9 14.5 203 18-259 45-275 (283)
89 2ooe_A Cleavage stimulation fa 99.8 5.2E-18 1.8E-22 154.2 22.9 222 32-295 256-497 (530)
90 1hz4_A MALT regulatory protein 99.8 1.3E-17 4.4E-22 144.7 24.3 260 51-321 14-318 (373)
91 4gco_A Protein STI-1; structur 99.8 1.8E-18 6.3E-23 126.2 15.1 113 122-245 13-125 (126)
92 2r5s_A Uncharacterized protein 99.8 1.1E-18 3.9E-23 135.1 14.2 160 84-259 6-167 (176)
93 2r5s_A Uncharacterized protein 99.8 2.1E-18 7.3E-23 133.6 14.0 163 51-229 6-172 (176)
94 3q7a_A Farnesyltransferase alp 99.8 5.5E-17 1.9E-21 137.0 23.6 233 56-299 59-341 (349)
95 4gco_A Protein STI-1; structur 99.8 8E-19 2.7E-23 128.1 10.6 109 192-303 4-123 (126)
96 3dss_A Geranylgeranyl transfer 99.8 1.5E-16 5.1E-21 133.8 25.3 237 31-301 47-315 (331)
97 3gyz_A Chaperone protein IPGC; 99.8 2.8E-19 9.7E-24 134.4 7.9 118 141-295 21-138 (151)
98 2vsy_A XCC0866; transferase, g 99.8 5.2E-18 1.8E-22 155.5 17.4 163 65-242 3-169 (568)
99 2ifu_A Gamma-SNAP; membrane fu 99.8 2.6E-17 9E-22 139.1 18.8 196 31-235 8-228 (307)
100 3qou_A Protein YBBN; thioredox 99.8 1.7E-17 5.8E-22 138.8 17.2 163 81-259 114-278 (287)
101 3qou_A Protein YBBN; thioredox 99.8 1.8E-17 6.3E-22 138.6 16.7 162 52-228 118-282 (287)
102 3rjv_A Putative SEL1 repeat pr 99.8 7.9E-17 2.7E-21 128.6 19.6 193 31-244 3-209 (212)
103 2ifu_A Gamma-SNAP; membrane fu 99.8 4.8E-18 1.6E-22 143.6 13.1 203 64-295 4-228 (307)
104 1p5q_A FKBP52, FK506-binding p 99.8 1.5E-19 5.1E-24 154.8 2.4 180 63-258 77-286 (336)
105 2vsy_A XCC0866; transferase, g 99.8 2E-17 6.7E-22 151.7 16.6 147 97-259 2-151 (568)
106 3gyz_A Chaperone protein IPGC; 99.7 2.9E-18 9.9E-23 128.9 8.2 103 122-235 36-138 (151)
107 1xi4_A Clathrin heavy chain; a 99.7 3.7E-16 1.3E-20 149.8 24.2 228 51-320 1105-1340(1630)
108 3dss_A Geranylgeranyl transfer 99.7 2.6E-16 8.9E-21 132.3 20.7 209 62-301 40-278 (331)
109 3rjv_A Putative SEL1 repeat pr 99.7 3.5E-16 1.2E-20 124.8 18.2 162 69-248 4-175 (212)
110 1b89_A Protein (clathrin heavy 99.7 1.3E-17 4.3E-22 144.2 10.0 239 31-319 20-266 (449)
111 3q7a_A Farnesyltransferase alp 99.7 1.4E-15 4.9E-20 128.4 22.0 217 31-259 71-325 (349)
112 4f3v_A ESX-1 secretion system 99.7 9.8E-17 3.4E-21 131.3 14.3 213 53-305 9-251 (282)
113 2vgx_A Chaperone SYCD; alterna 99.7 2.1E-17 7.2E-22 124.1 8.6 121 106-241 9-129 (148)
114 1p5q_A FKBP52, FK506-binding p 99.7 1.5E-18 5.2E-23 148.5 2.1 183 31-229 82-293 (336)
115 2c2l_A CHIP, carboxy terminus 99.7 1.3E-16 4.6E-21 133.0 13.1 189 50-259 3-193 (281)
116 4f3v_A ESX-1 secretion system 99.7 1.7E-16 5.9E-21 129.8 13.3 201 31-249 23-255 (282)
117 2fbn_A 70 kDa peptidylprolyl i 99.7 3.3E-17 1.1E-21 129.3 8.3 141 122-272 38-193 (198)
118 2vgx_A Chaperone SYCD; alterna 99.7 4.9E-17 1.7E-21 122.1 8.6 108 188-298 8-126 (148)
119 1xi4_A Clathrin heavy chain; a 99.7 9.6E-15 3.3E-19 140.2 25.6 216 31-288 1002-1248(1630)
120 2c2l_A CHIP, carboxy terminus 99.7 6.5E-17 2.2E-21 134.9 9.2 183 122-322 4-196 (281)
121 2fo7_A Synthetic consensus TPR 99.7 2E-15 6.8E-20 110.4 16.1 116 124-250 3-118 (136)
122 2fo7_A Synthetic consensus TPR 99.7 3.9E-15 1.3E-19 108.8 17.6 129 90-233 7-135 (136)
123 3upv_A Heat shock protein STI1 99.7 1.3E-15 4.4E-20 110.9 14.5 115 122-247 4-124 (126)
124 2xcb_A PCRH, regulatory protei 99.7 1.3E-16 4.6E-21 118.8 9.4 127 107-248 7-133 (142)
125 2qfc_A PLCR protein; TPR, HTH, 99.7 3.9E-15 1.3E-19 124.9 19.3 174 51-231 75-267 (293)
126 1hh8_A P67PHOX, NCF-2, neutrop 99.7 2.2E-15 7.7E-20 119.9 16.6 121 123-258 7-143 (213)
127 1b89_A Protein (clathrin heavy 99.7 6.4E-17 2.2E-21 139.8 7.7 265 11-320 27-339 (449)
128 2lni_A Stress-induced-phosphop 99.7 2.8E-15 9.5E-20 109.7 15.0 121 119-250 13-133 (133)
129 1dce_A Protein (RAB geranylger 99.7 2.2E-15 7.6E-20 137.1 17.5 176 63-254 40-244 (567)
130 1a17_A Serine/threonine protei 99.7 4.1E-15 1.4E-19 113.2 16.3 127 121-259 12-140 (166)
131 4gcn_A Protein STI-1; structur 99.7 1.5E-16 5.1E-21 116.2 7.7 114 160-300 8-121 (127)
132 2xcb_A PCRH, regulatory protei 99.7 2.5E-16 8.7E-21 117.3 9.0 109 188-299 5-124 (142)
133 1hh8_A P67PHOX, NCF-2, neutrop 99.7 6.2E-15 2.1E-19 117.3 17.1 132 53-235 8-155 (213)
134 3sz7_A HSC70 cochaperone (SGT) 99.7 3E-15 1E-19 114.3 14.4 116 120-246 9-124 (164)
135 3u3w_A Transcriptional activat 99.7 8.2E-15 2.8E-19 122.8 18.2 172 53-231 77-267 (293)
136 2e2e_A Formate-dependent nitri 99.6 1.2E-15 4E-20 118.0 11.6 133 95-242 21-156 (177)
137 2vyi_A SGTA protein; chaperone 99.6 8.1E-15 2.8E-19 106.6 15.2 119 121-250 11-129 (131)
138 2qfc_A PLCR protein; TPR, HTH, 99.6 3.3E-14 1.1E-18 119.2 20.8 156 124-291 77-267 (293)
139 3upv_A Heat shock protein STI1 99.6 2.6E-15 8.8E-20 109.3 11.9 111 160-303 4-120 (126)
140 1dce_A Protein (RAB geranylger 99.6 1E-15 3.5E-20 139.3 11.6 193 31-234 46-271 (567)
141 3u3w_A Transcriptional activat 99.6 1.5E-14 5E-19 121.3 17.8 155 126-292 79-268 (293)
142 2hr2_A Hypothetical protein; a 99.6 1.1E-15 3.9E-20 113.6 8.6 112 160-304 11-145 (159)
143 2e2e_A Formate-dependent nitri 99.6 1.5E-15 5E-20 117.5 9.4 117 180-299 23-153 (177)
144 1kt0_A FKBP51, 51 kDa FK506-bi 99.6 4E-16 1.4E-20 139.0 6.9 147 98-258 248-407 (457)
145 1elw_A TPR1-domain of HOP; HOP 99.6 4.6E-14 1.6E-18 100.6 16.2 114 122-246 4-117 (118)
146 3rkv_A Putative peptidylprolyl 99.6 5.4E-15 1.9E-19 112.6 11.5 122 120-250 9-147 (162)
147 4gcn_A Protein STI-1; structur 99.6 1.6E-14 5.4E-19 105.3 13.3 105 50-156 7-115 (127)
148 1a17_A Serine/threonine protei 99.6 9E-14 3.1E-18 105.7 17.4 132 50-196 12-146 (166)
149 1na0_A Designed protein CTPR3; 99.6 7.3E-14 2.5E-18 100.6 15.9 117 122-249 9-125 (125)
150 1hxi_A PEX5, peroxisome target 99.6 1.2E-14 4.3E-19 104.9 11.6 103 123-236 18-120 (121)
151 1hxi_A PEX5, peroxisome target 99.6 7.5E-15 2.6E-19 106.1 9.8 103 161-296 18-120 (121)
152 2hr2_A Hypothetical protein; a 99.6 1.6E-14 5.3E-19 107.5 11.3 111 122-241 11-142 (159)
153 3q49_B STIP1 homology and U bo 99.6 2.5E-14 8.7E-19 105.4 12.3 117 122-249 9-130 (137)
154 3mv2_B Coatomer subunit epsilo 99.6 1.4E-13 4.9E-18 114.0 17.7 206 70-320 85-307 (310)
155 2fbn_A 70 kDa peptidylprolyl i 99.6 4.5E-15 1.5E-19 117.0 7.9 88 123-221 89-176 (198)
156 1zu2_A Mitochondrial import re 99.6 3.7E-15 1.3E-19 110.6 6.8 107 180-304 15-134 (158)
157 3rkv_A Putative peptidylprolyl 99.6 1.7E-14 5.7E-19 109.9 10.5 112 160-304 11-141 (162)
158 4b4t_Q 26S proteasome regulato 99.6 9.7E-14 3.3E-18 122.5 16.7 198 54-259 7-239 (434)
159 1wao_1 Serine/threonine protei 99.5 5.9E-15 2E-19 132.0 7.8 140 123-299 7-159 (477)
160 3mv2_B Coatomer subunit epsilo 99.5 4.2E-13 1.4E-17 111.3 18.2 191 31-238 83-290 (310)
161 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 4.3E-15 1.5E-19 132.4 6.6 181 31-227 203-412 (457)
162 2dba_A Smooth muscle cell asso 99.5 2E-13 6.9E-18 101.6 14.8 119 121-248 27-146 (148)
163 3sz7_A HSC70 cochaperone (SGT) 99.5 1.5E-13 5.2E-18 104.7 14.3 115 48-170 8-123 (164)
164 2lni_A Stress-induced-phosphop 99.5 1.2E-13 4E-18 100.9 13.2 115 48-170 13-128 (133)
165 2xev_A YBGF; tetratricopeptide 99.5 1.9E-13 6.6E-18 99.4 14.3 118 123-249 3-124 (129)
166 2vyi_A SGTA protein; chaperone 99.5 9.9E-14 3.4E-18 100.8 12.1 119 50-217 11-130 (131)
167 3gw4_A Uncharacterized protein 99.5 3.9E-13 1.3E-17 105.8 16.5 165 62-233 3-179 (203)
168 2if4_A ATFKBP42; FKBP-like, al 99.5 2.5E-14 8.5E-19 122.4 9.1 141 122-296 179-334 (338)
169 1ihg_A Cyclophilin 40; ppiase 99.5 1.5E-13 5.2E-18 118.8 14.1 124 122-257 223-362 (370)
170 3q49_B STIP1 homology and U bo 99.5 7.2E-14 2.5E-18 102.9 10.3 105 195-302 3-123 (137)
171 3gw4_A Uncharacterized protein 99.5 1.8E-13 6.1E-18 107.7 13.1 153 95-259 3-170 (203)
172 1zu2_A Mitochondrial import re 99.5 1.2E-13 4.3E-18 102.4 11.3 107 133-243 13-133 (158)
173 1elr_A TPR2A-domain of HOP; HO 99.5 3.4E-13 1.2E-17 98.0 12.8 117 122-250 4-127 (131)
174 2if4_A ATFKBP42; FKBP-like, al 99.5 3.9E-14 1.3E-18 121.1 8.2 155 50-236 178-334 (338)
175 1na0_A Designed protein CTPR3; 99.5 1.6E-12 5.3E-17 93.5 15.3 114 51-213 9-123 (125)
176 4b4t_Q 26S proteasome regulato 99.5 1.1E-12 3.7E-17 115.8 17.2 196 86-291 6-246 (434)
177 2kck_A TPR repeat; tetratricop 99.5 4.4E-13 1.5E-17 94.5 11.7 106 155-295 3-111 (112)
178 1elw_A TPR1-domain of HOP; HOP 99.5 1.9E-12 6.5E-17 92.1 14.8 112 51-170 4-116 (118)
179 3k9i_A BH0479 protein; putativ 99.5 3.7E-14 1.3E-18 101.8 5.4 94 180-299 3-99 (117)
180 3k9i_A BH0479 protein; putativ 99.5 8.2E-14 2.8E-18 99.9 7.0 105 134-247 2-107 (117)
181 2dba_A Smooth muscle cell asso 99.5 4.5E-13 1.5E-17 99.7 10.9 107 195-304 22-142 (148)
182 1wao_1 Serine/threonine protei 99.5 2.4E-14 8.1E-19 128.1 4.5 133 90-237 12-157 (477)
183 2kck_A TPR repeat; tetratricop 99.4 6.8E-13 2.3E-17 93.6 10.6 102 123-235 7-111 (112)
184 2xev_A YBGF; tetratricopeptide 99.4 2.9E-12 9.9E-17 93.1 14.0 103 53-158 4-110 (129)
185 4e6h_A MRNA 3'-END-processing 99.4 1.5E-11 5.3E-16 113.6 21.7 225 33-296 328-576 (679)
186 3ro3_A PINS homolog, G-protein 99.4 2E-12 6.7E-17 97.4 11.8 144 51-233 9-161 (164)
187 3ro3_A PINS homolog, G-protein 99.4 1.8E-12 6.2E-17 97.6 10.6 124 160-293 9-161 (164)
188 1elr_A TPR2A-domain of HOP; HO 99.4 8E-12 2.7E-16 90.6 13.0 118 50-172 3-124 (131)
189 1ihg_A Cyclophilin 40; ppiase 99.4 7.9E-12 2.7E-16 108.0 12.9 139 52-223 224-363 (370)
190 2l6j_A TPR repeat-containing p 99.3 1.7E-12 5.7E-17 91.7 6.7 84 160-250 4-93 (111)
191 1na3_A Designed protein CTPR2; 99.3 3.2E-11 1.1E-15 81.6 11.0 83 160-249 9-91 (91)
192 2kat_A Uncharacterized protein 99.2 1E-10 3.5E-15 83.2 11.4 74 185-259 3-76 (115)
193 2kat_A Uncharacterized protein 99.2 5.8E-11 2E-15 84.5 9.7 100 139-249 2-103 (115)
194 2l6j_A TPR repeat-containing p 99.2 1.5E-11 5.1E-16 86.7 5.6 95 122-227 4-104 (111)
195 4e6h_A MRNA 3'-END-processing 99.2 1.9E-09 6.7E-14 99.6 20.1 217 4-237 331-577 (679)
196 3ma5_A Tetratricopeptide repea 99.1 3.2E-10 1.1E-14 78.5 9.8 63 196-259 2-64 (100)
197 1klx_A Cysteine rich protein B 99.1 2.4E-09 8.1E-14 78.8 14.1 93 136-247 9-105 (138)
198 1klx_A Cysteine rich protein B 99.1 8.2E-10 2.8E-14 81.3 11.5 110 181-301 9-135 (138)
199 1na3_A Designed protein CTPR2; 99.1 7.9E-10 2.7E-14 74.6 10.5 83 50-136 8-91 (91)
200 3ly7_A Transcriptional activat 99.1 1.7E-08 5.8E-13 85.3 19.3 162 127-320 201-369 (372)
201 2kc7_A BFR218_protein; tetratr 99.0 5.1E-10 1.7E-14 77.1 6.4 57 182-238 15-72 (99)
202 2kc7_A BFR218_protein; tetratr 99.0 2E-09 6.7E-14 74.1 9.3 89 204-296 3-96 (99)
203 3n71_A Histone lysine methyltr 99.0 6.2E-09 2.1E-13 92.7 14.7 134 91-231 316-465 (490)
204 3u64_A Protein TP_0956; tetrat 99.0 3E-08 1E-12 80.4 17.0 125 145-296 140-276 (301)
205 3n71_A Histone lysine methyltr 99.0 9.8E-09 3.3E-13 91.5 14.2 134 57-197 315-465 (490)
206 2uy1_A Cleavage stimulation fa 99.0 8.6E-07 2.9E-11 79.4 26.3 106 180-289 299-412 (493)
207 3ma5_A Tetratricopeptide repea 98.9 4E-09 1.4E-13 72.9 8.8 65 50-114 6-71 (100)
208 3u64_A Protein TP_0956; tetrat 98.8 5.8E-07 2E-11 73.0 19.0 94 137-234 178-273 (301)
209 1pc2_A Mitochondria fission pr 98.8 4.6E-08 1.6E-12 71.7 11.5 99 137-243 13-113 (152)
210 3bee_A Putative YFRE protein; 98.8 2.1E-08 7.2E-13 68.0 7.6 74 197-296 2-78 (93)
211 3bee_A Putative YFRE protein; 98.8 7.8E-08 2.7E-12 65.2 10.3 81 48-129 3-87 (93)
212 3ly7_A Transcriptional activat 98.7 5.6E-07 1.9E-11 76.0 16.8 72 155-236 274-345 (372)
213 1pc2_A Mitochondria fission pr 98.7 3.2E-08 1.1E-12 72.5 7.3 96 182-303 13-113 (152)
214 2uy1_A Cleavage stimulation fa 98.7 4.8E-06 1.7E-10 74.5 22.7 200 33-259 198-407 (493)
215 2v5f_A Prolyl 4-hydroxylase su 98.7 1.9E-07 6.4E-12 64.8 10.5 76 160-242 5-87 (104)
216 2v5f_A Prolyl 4-hydroxylase su 98.6 1.2E-06 4.3E-11 60.6 12.1 83 51-167 5-87 (104)
217 3qww_A SET and MYND domain-con 98.5 8E-07 2.7E-11 77.9 12.3 99 134-239 310-425 (433)
218 3qwp_A SET and MYND domain-con 98.5 1.7E-06 5.7E-11 76.0 12.3 112 59-170 295-423 (429)
219 3qww_A SET and MYND domain-con 98.5 1.4E-06 4.8E-11 76.3 11.6 92 31-151 315-411 (433)
220 3qwp_A SET and MYND domain-con 98.4 2.7E-06 9.3E-11 74.6 12.9 114 93-213 296-425 (429)
221 1nzn_A CGI-135 protein, fissio 98.3 2.1E-05 7.2E-10 55.5 12.5 101 135-243 14-116 (126)
222 4g26_A Pentatricopeptide repea 98.1 0.00077 2.6E-08 60.3 21.4 162 54-229 29-203 (501)
223 4g26_A Pentatricopeptide repea 98.1 0.00035 1.2E-08 62.6 18.5 165 125-295 29-211 (501)
224 3ffl_A Anaphase-promoting comp 98.0 2.7E-05 9.2E-10 57.4 8.2 46 120-170 120-165 (167)
225 3o48_A Mitochondria fission 1 98.0 0.00016 5.5E-09 51.1 11.6 81 160-244 40-121 (134)
226 1nzn_A CGI-135 protein, fissio 97.9 0.0002 6.8E-09 50.5 11.2 99 99-210 16-117 (126)
227 1y8m_A FIS1; mitochondria, unk 97.8 0.00034 1.1E-08 50.2 10.4 78 160-241 39-117 (144)
228 3ffl_A Anaphase-promoting comp 97.8 0.00016 5.3E-09 53.4 8.7 89 180-269 33-165 (167)
229 4h7y_A Dual specificity protei 97.7 0.0013 4.5E-08 47.5 12.0 124 79-215 8-141 (161)
230 4h7y_A Dual specificity protei 97.6 0.0012 4E-08 47.8 11.0 112 122-237 13-130 (161)
231 4gns_B Protein CSD3, chitin bi 97.2 0.0061 2.1E-07 56.7 13.8 118 132-259 258-394 (754)
232 3o48_A Mitochondria fission 1 97.1 0.014 4.8E-07 41.2 11.9 79 122-210 40-121 (134)
233 3txn_A 26S proteasome regulato 97.1 0.078 2.7E-06 45.5 18.7 171 52-229 20-209 (394)
234 1y8m_A FIS1; mitochondria, unk 97.0 0.032 1.1E-06 40.0 12.6 79 122-210 39-120 (144)
235 3mkq_A Coatomer beta'-subunit; 96.7 0.023 7.8E-07 53.8 13.2 96 182-285 667-773 (814)
236 3txn_A 26S proteasome regulato 96.6 0.087 3E-06 45.2 15.1 26 123-148 20-45 (394)
237 4gns_B Protein CSD3, chitin bi 96.5 0.14 4.9E-06 47.7 16.5 132 91-227 255-397 (754)
238 3mkq_B Coatomer subunit alpha; 96.4 0.026 8.8E-07 42.3 9.3 51 200-259 7-57 (177)
239 1ya0_A SMG-7 transcript varian 96.3 0.032 1.1E-06 49.5 10.7 79 162-247 154-232 (497)
240 3kae_A CDC27, possible protein 96.2 0.25 8.4E-06 36.5 18.3 172 52-234 34-241 (242)
241 4b4t_R RPN7, 26S proteasome re 95.6 0.49 1.7E-05 41.2 15.1 110 80-197 127-238 (429)
242 1ya0_A SMG-7 transcript varian 95.3 0.12 4.1E-06 45.9 10.2 77 53-133 154-231 (497)
243 3kae_A CDC27, possible protein 95.2 0.64 2.2E-05 34.4 16.0 72 182-259 48-137 (242)
244 2ff4_A Probable regulatory pro 95.1 0.16 5.4E-06 43.7 10.4 77 182-259 130-228 (388)
245 4b4t_R RPN7, 26S proteasome re 94.9 0.16 5.5E-06 44.3 9.9 101 52-152 132-238 (429)
246 3mkq_B Coatomer subunit alpha; 94.8 0.16 5.5E-06 38.0 8.1 69 181-255 19-95 (177)
247 4fhn_B Nucleoporin NUP120; pro 94.7 0.74 2.5E-05 45.6 15.1 98 51-148 842-964 (1139)
248 2wpv_A GET4, UPF0363 protein Y 94.7 1.5 5.1E-05 36.2 20.0 95 184-288 117-215 (312)
249 4b4t_P 26S proteasome regulato 94.5 0.46 1.6E-05 41.6 11.8 100 52-151 138-247 (445)
250 4b4t_S RPN3, 26S proteasome re 94.3 0.34 1.2E-05 42.8 10.3 132 94-234 146-303 (523)
251 1zbp_A Hypothetical protein VP 94.3 1 3.4E-05 36.1 12.0 57 95-157 8-64 (273)
252 4b4t_P 26S proteasome regulato 94.1 2.7 9.3E-05 36.7 22.2 193 31-230 33-247 (445)
253 3mkq_A Coatomer beta'-subunit; 93.6 1.8 6.1E-05 40.7 14.9 161 55-255 633-802 (814)
254 2ff4_A Probable regulatory pro 93.6 1.7 5.9E-05 37.2 13.5 90 133-229 126-233 (388)
255 1zbp_A Hypothetical protein VP 93.0 2.1 7.3E-05 34.3 11.9 112 180-298 10-137 (273)
256 4ady_A RPN2, 26S proteasome re 92.9 0.77 2.6E-05 43.9 10.8 241 31-294 391-661 (963)
257 4fhn_B Nucleoporin NUP120; pro 92.3 5 0.00017 39.8 16.1 52 90-149 818-869 (1139)
258 4ady_A RPN2, 26S proteasome re 91.0 4.7 0.00016 38.7 13.7 224 31-273 428-679 (963)
259 3spa_A Mtrpol, DNA-directed RN 90.1 6.1 0.00021 38.4 13.5 101 53-156 129-235 (1134)
260 4b4t_S RPN3, 26S proteasome re 89.6 0.22 7.4E-06 44.1 3.2 113 180-295 149-304 (523)
261 1qsa_A Protein (soluble lytic 89.4 13 0.00043 34.1 22.3 122 129-259 221-342 (618)
262 3spa_A Mtrpol, DNA-directed RN 84.7 8.3 0.00029 37.4 11.0 77 181-259 141-224 (1134)
263 1qsa_A Protein (soluble lytic 83.8 26 0.00088 32.0 22.7 237 36-289 57-347 (618)
264 3lvg_A Clathrin heavy chain 1; 82.7 0.0015 5.1E-08 56.9 -13.5 104 208-321 236-362 (624)
265 4gq2_M Nucleoporin NUP120; bet 81.0 11 0.00039 36.4 10.8 109 57-168 816-944 (950)
266 3esl_A Checkpoint serine/threo 77.5 13 0.00045 28.3 7.9 73 80-155 76-148 (202)
267 3lpz_A GET4 (YOR164C homolog); 77.4 30 0.001 28.8 20.6 40 185-224 120-159 (336)
268 2wpv_A GET4, UPF0363 protein Y 77.1 29 0.001 28.5 14.1 41 218-259 117-157 (312)
269 3ax2_A Mitochondrial import re 75.3 6 0.00021 24.5 4.6 32 55-86 21-53 (73)
270 3ax2_A Mitochondrial import re 69.8 15 0.00053 22.7 5.5 33 205-237 21-53 (73)
271 3t5x_A PCI domain-containing p 68.8 11 0.00038 28.8 5.9 33 202-234 15-47 (203)
272 4gq2_M Nucleoporin NUP120; bet 65.6 1E+02 0.0034 29.9 16.4 117 90-236 816-933 (950)
273 3u84_A Menin; MLL, JUND, ledgf 65.2 55 0.0019 28.1 9.5 104 161-289 258-366 (550)
274 3t5x_A PCI domain-containing p 64.3 15 0.00052 28.0 5.9 34 51-84 14-48 (203)
275 1om2_A Protein (mitochondrial 63.0 7.4 0.00025 25.5 3.3 29 55-83 24-53 (95)
276 3esl_A Checkpoint serine/threo 62.5 49 0.0017 25.2 8.2 62 53-115 82-146 (202)
277 2rpa_A Katanin P60 ATPase-cont 60.6 8.1 0.00028 24.3 3.0 25 54-78 15-39 (78)
278 2cpt_A SKD1 protein, vacuolar 59.7 9 0.00031 26.3 3.4 15 214-228 31-45 (117)
279 3re2_A Predicted protein; meni 59.6 78 0.0027 26.6 9.6 64 220-289 276-344 (472)
280 2ynq_A ESSB; membrane protein, 58.7 38 0.0013 24.6 6.6 85 129-227 15-99 (161)
281 2wvi_A Mitotic checkpoint seri 57.8 18 0.0006 26.6 4.9 52 103-156 79-130 (164)
282 2rpa_A Katanin P60 ATPase-cont 56.6 11 0.00037 23.8 3.1 26 204-229 15-40 (78)
283 1wy6_A Hypothetical protein ST 56.4 52 0.0018 23.5 9.6 58 91-152 98-155 (172)
284 1wy6_A Hypothetical protein ST 53.0 60 0.002 23.2 9.2 50 182-231 106-155 (172)
285 2crb_A Nuclear receptor bindin 51.5 29 0.00099 22.5 4.4 27 202-228 16-42 (97)
286 2crb_A Nuclear receptor bindin 49.9 32 0.0011 22.3 4.5 27 123-149 16-42 (97)
287 2wvi_A Mitotic checkpoint seri 49.2 75 0.0026 23.2 7.4 48 68-115 77-127 (164)
288 4aez_C MAD3, mitotic spindle c 48.0 82 0.0028 24.4 7.4 69 80-156 116-184 (223)
289 1om2_A Protein (mitochondrial 46.8 23 0.0008 23.2 3.6 29 205-233 24-52 (95)
290 2dl1_A Spartin; SPG20, MIT, st 45.0 19 0.00065 24.6 3.0 44 182-233 18-61 (116)
291 2cfu_A SDSA1; SDS-hydrolase, l 44.1 33 0.0011 31.6 5.6 46 53-98 451-497 (658)
292 2cpt_A SKD1 protein, vacuolar 39.9 87 0.003 21.3 8.2 12 64-75 31-42 (117)
293 2cfu_A SDSA1; SDS-hydrolase, l 39.3 51 0.0018 30.3 6.1 49 202-250 450-498 (658)
294 2ijq_A Hypothetical protein; s 38.4 1.1E+02 0.0039 22.2 7.7 57 95-151 43-104 (161)
295 3t5v_B Nuclear mRNA export pro 38.1 51 0.0017 28.7 5.5 62 56-117 181-254 (455)
296 3t5v_B Nuclear mRNA export pro 36.5 76 0.0026 27.6 6.3 33 202-234 221-254 (455)
297 4a5x_A MITD1, MIT domain-conta 36.0 84 0.0029 20.0 7.5 18 58-75 23-40 (86)
298 3myv_A SUSD superfamily protei 33.5 88 0.003 27.1 6.4 29 201-229 190-218 (454)
299 4gq4_A Menin; tumor suppressor 32.7 2.4E+02 0.0082 24.3 9.3 79 161-259 243-326 (489)
300 2br9_A 14-3-3E, 14-3-3 protein 31.2 1.2E+02 0.004 23.7 6.0 46 31-76 147-198 (234)
301 2br9_A 14-3-3E, 14-3-3 protein 30.7 1.9E+02 0.0065 22.5 18.7 57 53-109 7-66 (234)
302 3bqo_A Telomeric repeat-bindin 30.6 62 0.0021 24.5 4.1 34 59-92 125-159 (211)
303 2npm_A 14-3-3 domain containin 30.2 1.3E+02 0.0043 23.9 6.1 46 31-76 173-223 (260)
304 3kez_A Putative sugar binding 30.0 99 0.0034 26.8 6.2 29 201-229 196-224 (461)
305 4gof_A Small glutamine-rich te 29.8 29 0.001 19.8 1.7 18 279-296 32-49 (52)
306 3mcx_A SUSD superfamily protei 29.7 1.1E+02 0.0039 26.6 6.5 47 183-229 176-230 (477)
307 1o9d_A 14-3-3-like protein C; 29.6 2.1E+02 0.0072 22.7 18.8 58 52-109 9-71 (260)
308 2v6y_A AAA family ATPase, P60 29.6 1.1E+02 0.0037 19.3 7.7 13 63-75 23-35 (83)
309 2ynq_A ESSB; membrane protein, 29.5 1.6E+02 0.0056 21.3 7.5 85 58-148 15-99 (161)
310 2npm_A 14-3-3 domain containin 29.3 2.1E+02 0.0073 22.6 18.7 58 52-109 29-92 (260)
311 3myv_A SUSD superfamily protei 29.2 1.8E+02 0.0061 25.2 7.6 32 120-151 188-219 (454)
312 3s6n_M SurviVal motor neuron p 29.2 57 0.002 16.7 2.5 18 136-153 16-33 (37)
313 2w2u_A Hypothetical P60 katani 28.5 1.1E+02 0.0039 19.2 8.6 13 63-75 31-43 (83)
314 3lpz_A GET4 (YOR164C homolog); 28.4 2.5E+02 0.0087 23.2 20.8 41 218-259 119-159 (336)
315 4b4t_O 26S proteasome regulato 27.7 2.8E+02 0.0095 23.4 11.4 91 60-150 85-197 (393)
316 3kez_A Putative sugar binding 27.7 2E+02 0.0069 24.9 7.7 33 119-151 193-225 (461)
317 3lew_A SUSD-like carbohydrate 27.2 2E+02 0.0068 25.2 7.6 33 120-152 201-233 (495)
318 3lew_A SUSD-like carbohydrate 26.5 1.3E+02 0.0045 26.4 6.3 29 201-229 203-231 (495)
319 3uzd_A 14-3-3 protein gamma; s 26.1 2.4E+02 0.0082 22.2 7.8 12 31-42 148-159 (248)
320 3mcx_A SUSD superfamily protei 25.9 2.1E+02 0.0072 24.9 7.5 52 101-152 177-232 (477)
321 2cwy_A Hypothetical protein TT 25.8 1.4E+02 0.0048 19.3 5.0 55 94-150 11-67 (94)
322 1o9d_A 14-3-3-like protein C; 25.1 1.7E+02 0.0058 23.2 6.0 46 31-76 152-203 (260)
323 3snx_A SUSD homolog, putative 23.0 80 0.0027 27.5 4.2 50 180-229 164-219 (460)
324 3lvg_A Clathrin heavy chain 1; 21.7 1.6 5.5E-05 38.5 -6.6 74 198-277 51-134 (624)
325 3rau_A Tyrosine-protein phosph 21.3 3.6E+02 0.012 22.5 11.8 26 53-78 119-153 (363)
326 3bqo_A Telomeric repeat-bindin 20.6 79 0.0027 23.9 3.1 51 208-259 124-174 (211)
327 3uzd_A 14-3-3 protein gamma; s 20.5 3.1E+02 0.011 21.5 20.3 58 53-110 6-66 (248)
328 2yhe_A SEC-alkyl sulfatase; hy 24.5 24 0.0008 32.6 0.0 49 53-101 463-512 (668)
No 1
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=6.9e-35 Score=255.17 Aligned_cols=291 Identities=13% Similarity=0.156 Sum_probs=219.1
Q ss_pred hhhhccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCch
Q psy8160 9 LVEGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCT 85 (324)
Q Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~ 85 (324)
+...+.++..+..+|.+....+ ++|++.|+++++++|+. ..++..+|.++...|++++|+..|++++ .+|+...
T Consensus 60 ~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 136 (388)
T 1w3b_A 60 IKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF---IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC 136 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTH
T ss_pred HhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcch---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 3344445555566666555554 77777777777777653 3467777777777777777777777777 7777777
Q ss_pred hhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHH
Q psy8160 86 FTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQ 165 (324)
Q Consensus 86 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 165 (324)
++..+|.++...|++++|++.|++++...|... .++..+|.++...|++++|+..|++++..+ |+. ..++..
T Consensus 137 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~ 208 (388)
T 1w3b_A 137 VRSDLGNLLKALGRLEEAKACYLKAIETQPNFA----VAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNF--LDAYIN 208 (388)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTC--HHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCc--HHHHHH
Confidence 777777777777777777777777777766654 677777777777888888888888887777 766 347777
Q ss_pred HHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHH
Q psy8160 166 LGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245 (324)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 245 (324)
+|.++.. .+++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|+++.+|..+|.++
T Consensus 209 lg~~~~~-------~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 281 (388)
T 1w3b_A 209 LGNVLKE-------ARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL 281 (388)
T ss_dssp HHHHHHT-------TTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHH
T ss_pred HHHHHHH-------cCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 7777755 447778888888888888888888888888888888888888888888888888888888888888
Q ss_pred hhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHH
Q psy8160 246 FSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQ 314 (324)
Q Consensus 246 ~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 314 (324)
...|+ +++|+..| .+|..+|.++...|++++ |+..|+++++.+|+++.+..+++.+. ...|++++
T Consensus 282 ~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~--A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~~~~ 357 (388)
T 1w3b_A 282 KEKGS-VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEE--AVRLYRKALEVFPEFAAAHSNLASVL-QQQGKLQE 357 (388)
T ss_dssp HHHSC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHH--HHHHHHHHTTSCTTCHHHHHHHHHHH-HTTTCCHH
T ss_pred HHcCC-HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHH--HHHHHHHHHhcCCCcHHHHHHHHHHH-HHcCCHHH
Confidence 88888 88888877 677788888888888888 88888888888888887777776653 35677888
Q ss_pred HHHHHhh
Q psy8160 315 ALNKYRD 321 (324)
Q Consensus 315 a~~~~~~ 321 (324)
|+..|++
T Consensus 358 A~~~~~~ 364 (388)
T 1w3b_A 358 ALMHYKE 364 (388)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777764
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=3.1e-34 Score=250.99 Aligned_cols=295 Identities=16% Similarity=0.155 Sum_probs=267.0
Q ss_pred HHHhhhhccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCC
Q psy8160 6 QKNLVEGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDAS 82 (324)
Q Consensus 6 ~~~~~~~~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~ 82 (324)
++.+...+.++.....++.+....+ ++|...+.++++.+|. ..++++.+|.++...|++++|+..|++++ .+|+
T Consensus 23 ~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 99 (388)
T 1w3b_A 23 MQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL---LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD 99 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcc
Confidence 3444455556666666666655555 9999999999999986 45689999999999999999999999999 9999
Q ss_pred CchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHH
Q psy8160 83 PCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADI 162 (324)
Q Consensus 83 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 162 (324)
+..++..+|.++...|++++|+..|++++...|... .++..+|.++...|++++|+..|++++..+ |+. +.+
T Consensus 100 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~ 171 (388)
T 1w3b_A 100 FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY----CVRSDLGNLLKALGRLEEAKACYLKAIETQ--PNF--AVA 171 (388)
T ss_dssp CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT----HHHHHHHHHHHTTSCHHHHHHHHHHHHHHC--TTC--HHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCC--HHH
Confidence 999999999999999999999999999999988876 789999999999999999999999999998 887 559
Q ss_pred HHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhH
Q psy8160 163 CRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242 (324)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 242 (324)
+..+|.++.. .+++++|+..|+++++.+|.++.++..+|.++...|++++|+..|++++..+|+++.++..+|
T Consensus 172 ~~~l~~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 244 (388)
T 1w3b_A 172 WSNLGCVFNA-------QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244 (388)
T ss_dssp HHHHHHHHHT-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHH-------cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHH
Confidence 9999999976 559999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhh
Q psy8160 243 NKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNRED 311 (324)
Q Consensus 243 ~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 311 (324)
.++...|+ +++|+..| .+|..+|.++...|++++ |+..|+++++.+|+++.+..+++.+. ...|+
T Consensus 245 ~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~--A~~~~~~al~~~p~~~~~~~~l~~~~-~~~g~ 320 (388)
T 1w3b_A 245 CVYYEQGL-IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAE--AEDCYNTALRLCPTHADSLNNLANIK-REQGN 320 (388)
T ss_dssp HHHHHTTC-HHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHH--HHHHHHHHHHHCTTCHHHHHHHHHHH-HTTTC
T ss_pred HHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH--HHHHHHHHHhhCcccHHHHHHHHHHH-HHcCC
Confidence 99999999 99999999 789999999999999999 99999999999999999988887664 46789
Q ss_pred HHHHHHHHhhc
Q psy8160 312 YHQALNKYRDL 322 (324)
Q Consensus 312 ~~~a~~~~~~~ 322 (324)
+++|+..|+++
T Consensus 321 ~~~A~~~~~~a 331 (388)
T 1w3b_A 321 IEEAVRLYRKA 331 (388)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 3
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.2e-32 Score=230.04 Aligned_cols=278 Identities=10% Similarity=-0.053 Sum_probs=249.3
Q ss_pred HHhhhhccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCC
Q psy8160 7 KNLVEGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASP 83 (324)
Q Consensus 7 ~~~~~~~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~ 83 (324)
+.+.....++++...++...+..+ ++|++.|+++++.+|.. ..++..++.++...|++++|+..+++++ .+|.+
T Consensus 13 ~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 89 (330)
T 3hym_B 13 ESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFH---ASCLPVHIGTLVELNKANELFYLSHKLVDLYPSN 89 (330)
T ss_dssp -------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---TTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---hhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCC
Confidence 344455667777777777655555 99999999999999874 4467889999999999999999999999 99999
Q ss_pred chhhHHHHHHHHhcc-cHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHH
Q psy8160 84 CTFTKLEGLMFKVNN-EYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADI 162 (324)
Q Consensus 84 ~~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 162 (324)
..++..+|.++...| ++++|+..|++++...|... .++..+|.++...|++++|+..|++++... |+.. .+
T Consensus 90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~--~~ 161 (330)
T 3hym_B 90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYG----PAWIAYGHSFAVESEHDQAMAAYFTAAQLM--KGCH--LP 161 (330)
T ss_dssp THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCT----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCS--HH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhc--cccH--HH
Confidence 999999999999999 99999999999999888776 789999999999999999999999999999 7764 48
Q ss_pred HHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC---------CC
Q psy8160 163 CRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKS---------EG 233 (324)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---------p~ 233 (324)
+..+|.++.. .+++++|+.+++++++.+|.++.++..+|.++...|++++|+..+++++... |.
T Consensus 162 ~~~l~~~~~~-------~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 234 (330)
T 3hym_B 162 MLYIGLEYGL-------TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK 234 (330)
T ss_dssp HHHHHHHHHH-------TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTT
T ss_pred HHHHHHHHHH-------HhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccH
Confidence 8889999977 5599999999999999999999999999999999999999999999999986 77
Q ss_pred CHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchh
Q psy8160 234 NADTWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKD 302 (324)
Q Consensus 234 ~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 302 (324)
.+.+|..+|.++...|+ +++|+..| .+|..+|.++...|++++ |+.+|+++++++|+++.+...++
T Consensus 235 ~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~--A~~~~~~al~~~p~~~~~~~~l~ 311 (330)
T 3hym_B 235 WEPLLNNLGHVCRKLKK-YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFEN--AVDYFHTALGLRRDDTFSVTMLG 311 (330)
T ss_dssp CCHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHH--HHHHHHTTTTTCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHH--HHHHHHHHHccCCCchHHHHHHH
Confidence 78999999999999999 99999999 889999999999999999 99999999999999999988887
Q ss_pred hhc
Q psy8160 303 FSN 305 (324)
Q Consensus 303 ~~~ 305 (324)
...
T Consensus 312 ~~~ 314 (330)
T 3hym_B 312 HCI 314 (330)
T ss_dssp HHH
T ss_pred HHH
Confidence 644
No 4
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=8.5e-32 Score=232.01 Aligned_cols=284 Identities=12% Similarity=0.098 Sum_probs=239.1
Q ss_pred cccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHH
Q psy8160 16 SVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGL 92 (324)
Q Consensus 16 ~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~ 92 (324)
++.+..+|...+..+ ++|++.|+++++.+|+ ...+++.+|.++...|++++|+..|++++ .+|.+..++..+|.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 344555666555555 9999999999999886 35688999999999999999999999999 89999999999999
Q ss_pred HHHhcccHHHHHHHHHHHHHhcC---CCcccHHHHHHHH------------HHHHHHhhcHHHHHHHHHHHHhcCCCCCc
Q psy8160 93 MFKVNNEYDSALKHLTLCLIDAS---PCTFTKLEVRFHI------------AHLHEVQRKYKTAKDSYEQLLKEDDLPVH 157 (324)
Q Consensus 93 ~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~al~~~~~~~~ 157 (324)
++...|++++|+..|++++...| ... .++..+ |.++...|++++|+..+++++... |.+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~ 153 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEK----EAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--VWD 153 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChH----HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCc
Confidence 99999999999999999998777 433 444444 788889999999999999999988 777
Q ss_pred hhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH
Q psy8160 158 LKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADT 237 (324)
Q Consensus 158 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 237 (324)
..++..+|.++.. .+++++|+..++++++..|.++.+++.+|.++...|++++|+..|++++..+|+++.+
T Consensus 154 --~~~~~~~~~~~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 224 (359)
T 3ieg_A 154 --AELRELRAECFIK-------EGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRC 224 (359)
T ss_dssp --HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred --hHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHH
Confidence 4588899988876 4589999999999999999999999999999999999999999999999999999887
Q ss_pred HHH------------hHHHHhhcCCCHHHHHHHH---------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhc
Q psy8160 238 WCS------------IGNKDFSNNSNREDYHQAL---------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTS 290 (324)
Q Consensus 238 ~~~------------lg~~~~~~~~~~~~A~~~~---------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~ 290 (324)
+.. +|.++...|+ +++|+..| .++..+|.++...|++++ |+..|+++++.
T Consensus 225 ~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~--A~~~~~~~~~~ 301 (359)
T 3ieg_A 225 FAHYKQVKKLNKLIESAEELIRDGR-YTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVE--AIRICSEVLQM 301 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHH--HHHHHHHHHHh
Confidence 653 3788999999 99999888 446778999999999999 99999999999
Q ss_pred CCChhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 291 IASCKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 291 ~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
+|+++.+...++.+. ...|++++|+..|+.
T Consensus 302 ~~~~~~~~~~~~~~~-~~~g~~~~A~~~~~~ 331 (359)
T 3ieg_A 302 EPDNVNALKDRAEAY-LIEEMYDEAIQDYEA 331 (359)
T ss_dssp CTTCHHHHHHHHHHH-HHTTCHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHH-HHcCCHHHHHHHHHH
Confidence 999988888887764 356888888888765
No 5
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=1.7e-31 Score=237.88 Aligned_cols=299 Identities=11% Similarity=0.087 Sum_probs=236.5
Q ss_pred HHHHhhhhccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCC
Q psy8160 5 IQKNLVEGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDA 81 (324)
Q Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~ 81 (324)
+.+.+...+.++..+..+|...+..+ ++|+..|+++++.+|+ ...+++.+|.++...|++++|+..|++++ .+|
T Consensus 15 ~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 91 (450)
T 2y4t_A 15 TENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM 91 (450)
T ss_dssp --------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 34445556666666667776555555 8999999999998876 35688999999999999999999999999 899
Q ss_pred CCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCc---ccH--------HHHHHHHHHHHHHhhcHHHHHHHHHHHHh
Q psy8160 82 SPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCT---FTK--------LEVRFHIAHLHEVQRKYKTAKDSYEQLLK 150 (324)
Q Consensus 82 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~--------~~~~~~la~~~~~~~~~~~A~~~~~~al~ 150 (324)
.+..++..+|.++...|++++|+..|++++...|... ... ...+..+|.++...|++++|+..|++++.
T Consensus 92 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 171 (450)
T 2y4t_A 92 DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE 171 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9998999999999999999999999999988776543 110 01144457778888999999999999888
Q ss_pred cCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q psy8160 151 EDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK 230 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 230 (324)
.. |.+ ..++..+|.++.. .|++++|+..|+++++.+|.++.+|..+|.++...|++++|+..|++++..
T Consensus 172 ~~--~~~--~~~~~~l~~~~~~-------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 172 VC--VWD--AELRELRAECFIK-------EGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HC--TTC--HHHHHHHHHHHHH-------TTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hC--CCC--hHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88 776 4488888888866 448888888888888888888888888888888888888888888888888
Q ss_pred CCCCHHHHHHh------------HHHHhhcCCCHHHHHHHH---------------HHHHhhHHHHHHcCCCCcchHHHH
Q psy8160 231 SEGNADTWCSI------------GNKDFSNNSNREDYHQAL---------------NKYRDLGDFLVINNIPTSNNNRQC 283 (324)
Q Consensus 231 ~p~~~~~~~~l------------g~~~~~~~~~~~~A~~~~---------------~~~~~lg~~~~~~~~~~~~~A~~~ 283 (324)
+|+++..+..+ |.++...|+ +++|+..| .++..+|.++...|++++ |+..
T Consensus 241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~ 317 (450)
T 2y4t_A 241 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGR-YTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVE--AIRV 317 (450)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHH--HHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHH--HHHH
Confidence 88888877666 888888888 88888888 367888888888888888 8888
Q ss_pred HHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 284 YNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 284 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
|+++++.+|+++.++..++.+.. ..+++++|+..|+.
T Consensus 318 ~~~a~~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 318 CSEVLQMEPDNVNALKDRAEAYL-IEEMYDEAIQDYET 354 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred HHHHHHhCcccHHHHHHHHHHHH-HhcCHHHHHHHHHH
Confidence 88888888888888887776653 46788888887765
No 6
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=1.6e-30 Score=223.99 Aligned_cols=279 Identities=11% Similarity=0.072 Sum_probs=250.4
Q ss_pred HHHHhhhhccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCC
Q psy8160 5 IQKNLVEGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDA 81 (324)
Q Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~ 81 (324)
+++.+...+.++..+..+|.+....+ ++|+..|+++++.+|+. ..+++.+|.++...|++++|+..|++++ .+|
T Consensus 26 ~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 102 (359)
T 3ieg_A 26 FHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDF---TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCC
T ss_pred HHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc---chHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 45556666777778888888777666 99999999999999874 4689999999999999999999999999 999
Q ss_pred ---CCchhhHHH------------HHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy8160 82 ---SPCTFTKLE------------GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYE 146 (324)
Q Consensus 82 ---~~~~~~~~l------------a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 146 (324)
.+...+..+ |.++...|++++|++.+++++...|... .++..+|.++...|++++|+..++
T Consensus 103 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~ 178 (359)
T 3ieg_A 103 SEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDA----ELRELRAECFIKEGEPRKAISDLK 178 (359)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch----HHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888777766 7899999999999999999999988775 889999999999999999999999
Q ss_pred HHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHH------------HHHHHHHHc
Q psy8160 147 QLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLY------------LLGRCFAAV 214 (324)
Q Consensus 147 ~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~------------~lg~~~~~~ 214 (324)
+++... |.+ ..++..+|.++.. .+++++|+..++++++.+|.++.++. .+|.++...
T Consensus 179 ~~~~~~--~~~--~~~~~~la~~~~~-------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 247 (359)
T 3ieg_A 179 AASKLK--SDN--TEAFYKISTLYYQ-------LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD 247 (359)
T ss_dssp HHHTTC--SCC--HHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhC--CCC--HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999998 887 4599999999977 45999999999999999999987654 448889999
Q ss_pred CCHHHHHHHHHHHHccCCCCHH----HHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcch
Q psy8160 215 GKVHDAFLAYRNSVEKSEGNAD----TWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNN 279 (324)
Q Consensus 215 ~~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~ 279 (324)
|++++|+..+++++...|+++. ++..+|.++...|+ +++|+..| .+|..+|.++...|++++
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-- 324 (359)
T 3ieg_A 248 GRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK-PVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDE-- 324 (359)
T ss_dssp TCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH--
T ss_pred CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHH--
Confidence 9999999999999999999975 46679999999999 99999999 889999999999999999
Q ss_pred HHHHHHHhhhcCCChhhhhhchhhh
Q psy8160 280 NRQCYNSYSTSIASCKHINNNKDFS 304 (324)
Q Consensus 280 A~~~~~~al~~~p~~~~~~~~l~~~ 304 (324)
|+..|+++++++|+++.++..+..+
T Consensus 325 A~~~~~~a~~~~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 325 AIQDYEAAQEHNENDQQIREGLEKA 349 (359)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCChHHHHHHHHH
Confidence 9999999999999999988777654
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=2.7e-30 Score=230.01 Aligned_cols=277 Identities=12% Similarity=0.084 Sum_probs=248.1
Q ss_pred HHHHhhhhccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCC
Q psy8160 5 IQKNLVEGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDA 81 (324)
Q Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~ 81 (324)
+++.+...+.++..+..++......+ ++|+..|+++++.+|+. ..+++.+|.++...|++++|+..|++++ .+|
T Consensus 49 ~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 125 (450)
T 2y4t_A 49 FHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF---TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 125 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 34455555666777777777666666 99999999999999874 5689999999999999999999999999 999
Q ss_pred CCc---hhhHHH------------HHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHH
Q psy8160 82 SPC---TFTKLE------------GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYE 146 (324)
Q Consensus 82 ~~~---~~~~~l------------a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 146 (324)
.+. ..+..+ |.++...|++++|+..|++++...|... .++..+|.++...|++++|+..|+
T Consensus 126 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~ 201 (450)
T 2y4t_A 126 SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDA----ELRELRAECFIKEGEPRKAISDLK 201 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCGGGGHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHCCCHHHHHHHHH
Confidence 987 665544 6679999999999999999999888765 889999999999999999999999
Q ss_pred HHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHH------------HHHHHHc
Q psy8160 147 QLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLL------------GRCFAAV 214 (324)
Q Consensus 147 ~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l------------g~~~~~~ 214 (324)
+++..+ |.+ ..++..+|.++.. .|++++|+..+++++..+|.++..+..+ |.++...
T Consensus 202 ~~~~~~--~~~--~~~~~~l~~~~~~-------~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (450)
T 2y4t_A 202 AASKLK--NDN--TEAFYKISTLYYQ-------LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD 270 (450)
T ss_dssp HHHHHH--CSC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhC--CCC--HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999998 877 4599999999977 5599999999999999999999887766 9999999
Q ss_pred CCHHHHHHHHHHHHccCCCCHH----HHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcch
Q psy8160 215 GKVHDAFLAYRNSVEKSEGNAD----TWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNN 279 (324)
Q Consensus 215 ~~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~ 279 (324)
|++++|+..|++++...|+++. .+..+|.++...|+ +++|+..+ .+|..+|.++...|++++
T Consensus 271 g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~-- 347 (450)
T 2y4t_A 271 GRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEK-PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDE-- 347 (450)
T ss_dssp TCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH--
T ss_pred CCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHH--
Confidence 9999999999999999999854 78899999999999 99999999 789999999999999999
Q ss_pred HHHHHHHhhhcCCChhhhhhchh
Q psy8160 280 NRQCYNSYSTSIASCKHINNNKD 302 (324)
Q Consensus 280 A~~~~~~al~~~p~~~~~~~~l~ 302 (324)
|+..|+++++++|+++.+...++
T Consensus 348 A~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 348 AIQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHhCcchHHHHHHHH
Confidence 99999999999999998877776
No 8
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.98 E-value=7.3e-31 Score=227.54 Aligned_cols=270 Identities=12% Similarity=0.053 Sum_probs=237.0
Q ss_pred HHHHH-HHHHHhccCCCccc-chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHH
Q psy8160 31 IKAIK-TFQQLLYVDPSYLR-ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHL 107 (324)
Q Consensus 31 ~~A~~-~~~~~l~~~p~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 107 (324)
++|++ .|.+++.+.|+.+. ....++.+|.++...|++++|+..|++++ .+|.+..++..+|.++...|++++|+..|
T Consensus 42 ~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 121 (368)
T 1fch_A 42 DDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISAL 121 (368)
T ss_dssp ----CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 88999 99999999987653 25578999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHH----------------HHHHHHH
Q psy8160 108 TLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICR----------------QLGWMYH 171 (324)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~----------------~l~~~~~ 171 (324)
++++...|... .++..+|.++...|++++|+..|++++... |.... .+. .++.++
T Consensus 122 ~~al~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~- 192 (368)
T 1fch_A 122 RRCLELKPDNQ----TALMALAVSFTNESLQRQACEILRDWLRYT--PAYAH--LVTPAEEGAGGAGLGPSKRILGSLL- 192 (368)
T ss_dssp HHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGG--GCC---------------CTTHHHH-
T ss_pred HHHHhcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHH--HHHHHHHHhhhhcccHHHHHHHHHh-
Confidence 99999988765 899999999999999999999999999998 76543 332 345544
Q ss_pred hhhhhcccchhHHHHHHHHHHHhhhCCc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcC
Q psy8160 172 CIDTLGEKSHRETLAIHCLQKSIEADPK--SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNN 249 (324)
Q Consensus 172 ~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 249 (324)
. .+++++|+..++++++.+|. ++.++..+|.++...|++++|+..|++++..+|+++.+|..+|.++...|
T Consensus 193 ~-------~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 193 S-------DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGN 265 (368)
T ss_dssp H-------HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred h-------cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcC
Confidence 3 45999999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCCh-----------hhhhhchhhhccC
Q psy8160 250 SNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASC-----------KHINNNKDFSNNS 307 (324)
Q Consensus 250 ~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~-----------~~~~~~l~~~~~~ 307 (324)
+ +++|+..| .++..+|.+|...|++++ |+..|++++++.|++ +.++..++.+. .
T Consensus 266 ~-~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~ 341 (368)
T 1fch_A 266 Q-SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHRE--AVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLAL-S 341 (368)
T ss_dssp C-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH--HHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHH-H
T ss_pred C-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHH-H
Confidence 9 99999999 789999999999999999 999999999999988 67777776543 3
Q ss_pred ChhhHHHHHHHHh
Q psy8160 308 NREDYHQALNKYR 320 (324)
Q Consensus 308 ~~~~~~~a~~~~~ 320 (324)
..|++++|...++
T Consensus 342 ~~g~~~~A~~~~~ 354 (368)
T 1fch_A 342 MLGQSDAYGAADA 354 (368)
T ss_dssp HHTCGGGHHHHHT
T ss_pred HhCChHhHHHhHH
Confidence 4566666665544
No 9
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=215.94 Aligned_cols=254 Identities=8% Similarity=0.018 Sum_probs=237.8
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
+.++++.+|..++..|++++|+..|++++ .+|.+......++.++...|++++|+..+++++...|... .+++.+
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l 96 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNP----VSWFAV 96 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST----HHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH----HHHHHH
Confidence 45578999999999999999999999999 9999999999999999999999999999999999988876 889999
Q ss_pred HHHHHHhh-cHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHH
Q psy8160 129 AHLHEVQR-KYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLL 207 (324)
Q Consensus 129 a~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 207 (324)
|.++...| ++++|+..|++++..+ |.. ..++..+|.++.. .+++++|+..++++++..|.+..++..+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~--~~~--~~~~~~l~~~~~~-------~~~~~~A~~~~~~a~~~~~~~~~~~~~l 165 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE--KTY--GPAWIAYGHSFAV-------ESEHDQAMAAYFTAAQLMKGCHLPMLYI 165 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC--TTC--THHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHTTTCSHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC--Ccc--HHHHHHHHHHHHH-------ccCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 99999999 9999999999999998 877 4499999999977 5599999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH--------------------HHHHhhHH
Q psy8160 208 GRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL--------------------NKYRDLGD 267 (324)
Q Consensus 208 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~--------------------~~~~~lg~ 267 (324)
|.++...|++++|+..+++++..+|+++.++..+|.++...|+ +++|+..+ .++..+|.
T Consensus 166 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~ 244 (330)
T 3hym_B 166 GLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE-WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccc-HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 99999998 37899999
Q ss_pred HHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhhc
Q psy8160 268 FLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRDL 322 (324)
Q Consensus 268 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 322 (324)
+|...|++++ |+.+|+++++.+|+++.+...++.+. ...|++.+|+..|+..
T Consensus 245 ~~~~~g~~~~--A~~~~~~a~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 245 VCRKLKKYAE--ALDYHRQALVLIPQNASTYSAIGYIH-SLMGNFENAVDYFHTA 296 (330)
T ss_dssp HHHHTTCHHH--HHHHHHHHHHHSTTCSHHHHHHHHHH-HHHTCHHHHHHHHHTT
T ss_pred HHHHhcCHHH--HHHHHHHHHhhCccchHHHHHHHHHH-HHhccHHHHHHHHHHH
Confidence 9999999999 99999999999999999999888764 4578999999988764
No 10
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.97 E-value=4.7e-30 Score=222.55 Aligned_cols=245 Identities=11% Similarity=0.071 Sum_probs=211.8
Q ss_pred HHHHHHHHHhccCCCcc-cchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 32 KAIKTFQQLLYVDPSYL-RANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 32 ~A~~~~~~~l~~~p~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
.+...+.+.+...|..+ .....++.+|.++...|++++|+..|++++ .+|.+..++..+|.++...|++++|+..|++
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 124 (365)
T 4eqf_A 45 VTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQR 124 (365)
T ss_dssp --------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34455666666666544 335579999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHH----------HHHHHHHhhhhhccc
Q psy8160 110 CLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICR----------QLGWMYHCIDTLGEK 179 (324)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~----------~l~~~~~~~~~~~~~ 179 (324)
++...|... .++..+|.++...|++++|+..|++++... |.... ++. .+|.++..
T Consensus 125 al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~--~~~~~~~~~~~~~~l~~~~~~------- 189 (365)
T 4eqf_A 125 CLELQPNNL----KALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKY--LVKNKKGSPGLTRRMSKSPVD------- 189 (365)
T ss_dssp HHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHC--C-------------------C-------
T ss_pred HHhcCCCCH----HHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchH--HHhhhccchHHHHHHHHHHhh-------
Confidence 999988765 889999999999999999999999999988 66532 333 34667755
Q ss_pred chhHHHHHHHHHHHhhhCCc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHH
Q psy8160 180 SHRETLAIHCLQKSIEADPK--SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQ 257 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~ 257 (324)
.+++++|+.+++++++.+|. ++.+++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|+ +++|+.
T Consensus 190 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~ 268 (365)
T 4eqf_A 190 SSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDR-SEEAVE 268 (365)
T ss_dssp CHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHH
Confidence 56999999999999999999 899999999999999999999999999999999999999999999999999 999999
Q ss_pred HH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCCh
Q psy8160 258 AL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASC 294 (324)
Q Consensus 258 ~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (324)
.| .+|.++|.+|...|++++ |+.+|+++++++|++
T Consensus 269 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~--A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 269 AYTRALEIQPGFIRSRYNLGISCINLGAYRE--AVSNFLTALSLQRKS 314 (365)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH--HHHHHHHHHHHHHCC
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHCCCHHH--HHHHHHHHHHhCccc
Confidence 99 789999999999999999 999999999999883
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.97 E-value=2.5e-29 Score=228.62 Aligned_cols=294 Identities=11% Similarity=0.021 Sum_probs=208.4
Q ss_pred HHHHhhhhccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHH-------
Q psy8160 5 IQKNLVEGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLT------- 75 (324)
Q Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~------- 75 (324)
+++.+...+.++..+..+|.+....+ ++|++.|+++++++|+ ...+++.+|.++...|++++|+..|+
T Consensus 48 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 124 (537)
T 3fp2_A 48 YQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD---HSKALLRRASANESLGNFTDAMFDLSVLSLNGD 124 (537)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHC----
T ss_pred HHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC
Confidence 44555556666777777777666555 8888888888888775 34567777777777777777766553
Q ss_pred --------------------------------------------------------------------------------
Q psy8160 76 -------------------------------------------------------------------------------- 75 (324)
Q Consensus 76 -------------------------------------------------------------------------------- 75 (324)
T Consensus 125 ~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 204 (537)
T 3fp2_A 125 FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLY 204 (537)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHH
Confidence
Q ss_pred ----------------------HHh-cCCCCch-------hhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHH
Q psy8160 76 ----------------------LCL-IDASPCT-------FTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVR 125 (324)
Q Consensus 76 ----------------------~al-~~~~~~~-------~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 125 (324)
+++ .+|.+.. ++..+|.++...|++++|+..+++++...|. . .++
T Consensus 205 ~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~----~~~ 279 (537)
T 3fp2_A 205 SATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-P----NSY 279 (537)
T ss_dssp TCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-H----HHH
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-c----hHH
Confidence 222 2333322 2333456666666677777777777666554 2 566
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHH
Q psy8160 126 FHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLY 205 (324)
Q Consensus 126 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 205 (324)
..+|.++...|++++|+..|++++..+ |.+ +.++..+|.++.. .+++++|+..++++++.+|.++.++.
T Consensus 280 ~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~l~~~~~~-------~~~~~~A~~~~~~a~~~~~~~~~~~~ 348 (537)
T 3fp2_A 280 IFLALTLADKENSQEFFKFFQKAVDLN--PEY--PPTYYHRGQMYFI-------LQDYKNAKEDFQKAQSLNPENVYPYI 348 (537)
T ss_dssp HHHHHHTCCSSCCHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCSHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhccC--CCC--HHHHHHHHHHHHh-------cCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 677777777777777777777777776 665 3477777777755 44788888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------------HHHHhhHHH
Q psy8160 206 LLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-----------------NKYRDLGDF 268 (324)
Q Consensus 206 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------------~~~~~lg~~ 268 (324)
.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|+ +++|+..| ..+..+|.+
T Consensus 349 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~ 427 (537)
T 3fp2_A 349 QLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGD-FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATI 427 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888 88888777 335566777
Q ss_pred HHHc----------CCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 269 LVIN----------NIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 269 ~~~~----------~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
+... |++++ |+..|+++++.+|+++.+...++.+. ...|++++|+..|+.
T Consensus 428 ~~~~~~~~~~~~~~~~~~~--A~~~~~~a~~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 428 LARQSSQDPTQLDEEKFNA--AIKLLTKACELDPRSEQAKIGLAQLK-LQMEKIDEAIELFED 487 (537)
T ss_dssp HHHHHTC----CCHHHHHH--HHHHHHHHHHHCTTCHHHHHHHHHHH-HHTTCHHHHHHHHHH
T ss_pred HHHHhhccchhhhHhHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHH-HHhccHHHHHHHHHH
Confidence 8777 88888 88888888888888888877777654 345778888877765
No 12
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.97 E-value=1.4e-29 Score=219.50 Aligned_cols=256 Identities=14% Similarity=0.132 Sum_probs=218.9
Q ss_pred chhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHH
Q psy8160 19 VPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFK 95 (324)
Q Consensus 19 ~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~ 95 (324)
+..+|......+ ++|++.|+++++.+|+ ...+++.+|.++...|++++|+.+|++++ .+|.+..++..+|.++.
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPG---DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 556666555555 9999999999999986 46689999999999999999999999999 99999999999999999
Q ss_pred hcccHHHHHHHHHHHHHhcCCCccc------HHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q psy8160 96 VNNEYDSALKHLTLCLIDASPCTFT------KLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWM 169 (324)
Q Consensus 96 ~~~~~~~A~~~~~~~l~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~ 169 (324)
..|++++|+..|++++...|..... ...++..+|.++...|++++|+..|++++..+ |....+.++..+|.+
T Consensus 145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN--GDMIDPDLQTGLGVL 222 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS--CSSCCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--cCccCHHHHHHHHHH
Confidence 9999999999999999887654321 12345566999999999999999999999999 873236699999999
Q ss_pred HHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcC
Q psy8160 170 YHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNN 249 (324)
Q Consensus 170 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 249 (324)
+.. .+++++|+.+|+++++.+|.++.+|..+|.++...|++++|+..|++++.++|+++.+|..+|.++...|
T Consensus 223 ~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 295 (365)
T 4eqf_A 223 FHL-------SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLG 295 (365)
T ss_dssp HHH-------HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHH-------CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence 977 4599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHH-----------------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhh
Q psy8160 250 SNREDYHQAL-----------------------NKYRDLGDFLVINNIPTSNNNRQCYNSYST 289 (324)
Q Consensus 250 ~~~~~A~~~~-----------------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~ 289 (324)
+ +++|+..| .+|..+|.++...|+.+. |..+..+.++
T Consensus 296 ~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--a~~~~~~~l~ 355 (365)
T 4eqf_A 296 A-YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPEL--FQAANLGDLD 355 (365)
T ss_dssp C-CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHH--HHHHHTTCCG
T ss_pred C-HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHH--HHHHHHhhHH
Confidence 9 99999998 468899999999999888 7776666443
No 13
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.97 E-value=6.2e-30 Score=222.03 Aligned_cols=236 Identities=11% Similarity=0.044 Sum_probs=216.9
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhccc-HHHHHHHHHHHHHhcCCCcccHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNE-YDSALKHLTLCLIDASPCTFTKLEVRFH 127 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 127 (324)
..+++..+|.++...|++++|+..|++++ ++|++..++..+|.++...|+ +++|+..|++++..+|.+. .+|++
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~----~a~~~ 171 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY----QVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH----HHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH----HHHHH
Confidence 46789999999999999999999999999 999999999999999999997 9999999999999999886 89999
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHH
Q psy8160 128 IAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLL 207 (324)
Q Consensus 128 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 207 (324)
+|.++..+|++++|+..|++++.++ |++. .+|+.+|+++.. .|++++|+.+|+++++++|.+..+|+.+
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ld--P~~~--~a~~~lg~~~~~-------~g~~~eAl~~~~~al~l~P~~~~a~~~l 240 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQD--AKNY--HAWQHRQWVIQE-------FKLWDNELQYVDQLLKEDVRNNSVWNQR 240 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHC--TTCH--HHHHHHHHHHHH-------HTCCTTHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC--ccCH--HHHHHHHHHHHH-------cCChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999999999999999 9884 499999999977 4489999999999999999999999999
Q ss_pred HHHHHH-cCCHHHH-----HHHHHHHHccCCCCHHHHHHhHHHHhhcC--CCHHHHHHHH----------HHHHhhHHHH
Q psy8160 208 GRCFAA-VGKVHDA-----FLAYRNSVEKSEGNADTWCSIGNKDFSNN--SNREDYHQAL----------NKYRDLGDFL 269 (324)
Q Consensus 208 g~~~~~-~~~~~~A-----~~~~~~al~~~p~~~~~~~~lg~~~~~~~--~~~~~A~~~~----------~~~~~lg~~~ 269 (324)
|.++.. .|.+++| +.+|++++.++|+++.+|.++|.++...| + +++|++.+ .++..+|.+|
T Consensus 241 g~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~-~~~a~~~~~~~~~~p~~~~al~~La~~~ 319 (382)
T 2h6f_A 241 YFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSK-YPNLLNQLLDLQPSHSSPYLIAFLVDIY 319 (382)
T ss_dssp HHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGG-CHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccc-hHHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 999999 5555888 59999999999999999999999999988 7 89998887 5788999999
Q ss_pred HHcC---------CCCcchHHHHHHHh-hhcCCChhhhhhchhh
Q psy8160 270 VINN---------IPTSNNNRQCYNSY-STSIASCKHINNNKDF 303 (324)
Q Consensus 270 ~~~~---------~~~~~~A~~~~~~a-l~~~p~~~~~~~~l~~ 303 (324)
...+ .+++ |+++|+++ ++++|..+..+..+..
T Consensus 320 ~~~~~~~~~~~~~~~~~--A~~~~~~l~~~~DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 320 EDMLENQCDNKEDILNK--ALELCEILAKEKDTIRKEYWRYIGR 361 (382)
T ss_dssp HHHHHTTCSSHHHHHHH--HHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHhcccccchHHHHHH--HHHHHHHHHHHhCchhHHHHHHHHH
Confidence 9875 2478 99999999 9999999888777654
No 14
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.97 E-value=5.8e-29 Score=206.65 Aligned_cols=241 Identities=13% Similarity=0.112 Sum_probs=207.6
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIA 129 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la 129 (324)
.++++..|.+++..|++++|+..|++++ .+|.+..++..+|.++...|++++|+..+++++. .+.+......++..+|
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence 3468899999999999999999999999 9999999999999999999999999999999998 4444434456789999
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHH
Q psy8160 130 HLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGR 209 (324)
Q Consensus 130 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~ 209 (324)
.++...|++++|+..|++++..+ |.. ..++..+|.++.. .+++++|+.+++++++.+|.++.+++.+|.
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~--~~~--~~~~~~l~~~~~~-------~~~~~~A~~~~~~al~~~~~~~~~~~~l~~ 150 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD--TTR--LDMYGQIGSYFYN-------KGNFPLAIQYMEKQIRPTTTDPKVFYELGQ 150 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTC--THHHHHHHHHHHH-------TTCHHHHHHHHGGGCCSSCCCHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC--ccc--HHHHHHHHHHHHH-------ccCHHHHHHHHHHHhhcCCCcHHHHHHHHH
Confidence 99999999999999999999998 877 4499999999977 559999999999999999999999999994
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCC---------CHHHHHHHH------------HHHHhhHHH
Q psy8160 210 CFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNS---------NREDYHQAL------------NKYRDLGDF 268 (324)
Q Consensus 210 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~---------~~~~A~~~~------------~~~~~lg~~ 268 (324)
.....+++++|+..|+++++.+|+++.++..+|.++...++ .+++|++.. .+|..+|.+
T Consensus 151 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 230 (272)
T 3u4t_A 151 AYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYY 230 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 44555699999999999999999999999999999988774 144444443 478889999
Q ss_pred HHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhc
Q psy8160 269 LVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSN 305 (324)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 305 (324)
|...|++++ |+.+|+++++++|+++.++..+..+.
T Consensus 231 ~~~~~~~~~--A~~~~~~al~~~p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 231 YTINRDKVK--ADAAWKNILALDPTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHTTCHHH--HHHHHHHHHHHCTTCHHHHHHHC---
T ss_pred HHHcCCHHH--HHHHHHHHHhcCccHHHHHHHhhhhh
Confidence 999999999 99999999999999999998887654
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=5.2e-29 Score=215.86 Aligned_cols=260 Identities=16% Similarity=0.144 Sum_probs=229.1
Q ss_pred ccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHH
Q psy8160 17 VRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLM 93 (324)
Q Consensus 17 ~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~ 93 (324)
..+..+|......+ ++|+..|+++++.+|+ ...+++.+|.++...|++++|+.+|++++ .+|.+..++..+|.+
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~ 141 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK---HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS 141 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34556666555555 9999999999999986 45689999999999999999999999999 999999999999999
Q ss_pred HHhcccHHHHHHHHHHHHHhcCCCcccH------------HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhH
Q psy8160 94 FKVNNEYDSALKHLTLCLIDASPCTFTK------------LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKAD 161 (324)
Q Consensus 94 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 161 (324)
+...|++++|+..+++++...|...... ......++.++ ..|++++|+..|++++..+ |....+.
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~--p~~~~~~ 218 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLD--PTSIDPD 218 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHS--TTSCCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhC--cCcccHH
Confidence 9999999999999999999887765211 01112467666 8999999999999999999 7732256
Q ss_pred HHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHh
Q psy8160 162 ICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSI 241 (324)
Q Consensus 162 ~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 241 (324)
++..+|.++.. .|++++|+.++++++..+|.++.++..+|.++...|++++|+..|++++.++|+++.++..+
T Consensus 219 ~~~~l~~~~~~-------~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l 291 (368)
T 1fch_A 219 VQCGLGVLFNL-------SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL 291 (368)
T ss_dssp HHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 99999999977 55999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCHHHHHHHH----------------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCC
Q psy8160 242 GNKDFSNNSNREDYHQAL----------------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIA 292 (324)
Q Consensus 242 g~~~~~~~~~~~~A~~~~----------------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p 292 (324)
|.++...|+ +++|+..| .+|..+|.+|...|++++ |..+++++++..+
T Consensus 292 ~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~l~~~~ 361 (368)
T 1fch_A 292 GISCINLGA-HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA--YGAADARDLSTLL 361 (368)
T ss_dssp HHHHHHHTC-HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG--HHHHHTTCHHHHH
T ss_pred HHHHHHCCC-HHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh--HHHhHHHHHHHHH
Confidence 999999999 99999998 368899999999999999 9999998887544
No 16
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.97 E-value=1.6e-29 Score=229.94 Aligned_cols=287 Identities=10% Similarity=0.075 Sum_probs=225.0
Q ss_pred cccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHH
Q psy8160 16 SVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGL 92 (324)
Q Consensus 16 ~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~ 92 (324)
++.+..+|...+..+ ++|++.|+++++.+|+ +..+++.+|.++..+|++++|+..|++++ .+|++..++..+|.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN---EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 344455565555555 9999999999999986 45689999999999999999999999999 99999999999999
Q ss_pred HHHhcccHHHHHHHHHHHHHhcCC--------------------------------------------------------
Q psy8160 93 MFKVNNEYDSALKHLTLCLIDASP-------------------------------------------------------- 116 (324)
Q Consensus 93 ~~~~~~~~~~A~~~~~~~l~~~~~-------------------------------------------------------- 116 (324)
++...|++++|+..|+ ++...|.
T Consensus 102 ~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred HHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 9999999999988774 4422221
Q ss_pred ------------------------------------------------------Ccc---cHHHHHHHHHHHHHHhhcHH
Q psy8160 117 ------------------------------------------------------CTF---TKLEVRFHIAHLHEVQRKYK 139 (324)
Q Consensus 117 ------------------------------------------------------~~~---~~~~~~~~la~~~~~~~~~~ 139 (324)
+.. ..+.++..+|.++...|+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 110 01235667777888888888
Q ss_pred HHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHH
Q psy8160 140 TAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHD 219 (324)
Q Consensus 140 ~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~ 219 (324)
+|+..|++++..+ |. ..++..+|.++.. .+++++|+.+++++++.+|.++.++..+|.++...|++++
T Consensus 261 ~A~~~~~~~~~~~--~~---~~~~~~l~~~~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 328 (537)
T 3fp2_A 261 DAQVLLQESINLH--PT---PNSYIFLALTLAD-------KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKN 328 (537)
T ss_dssp HHHHHHHHHHHHC--CC---HHHHHHHHHHTCC-------SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhcC--CC---chHHHHHHHHHHH-------hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHH
Confidence 8888888888877 65 3377788887755 4488888888888888888888888888888888888888
Q ss_pred HHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhh
Q psy8160 220 AFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYS 288 (324)
Q Consensus 220 A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al 288 (324)
|+..|++++..+|+++.+|..+|.++...|+ +++|+..| .++..+|.++...|++++ |+..|++++
T Consensus 329 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~a~ 405 (537)
T 3fp2_A 329 AKEDFQKAQSLNPENVYPYIQLACLLYKQGK-FTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDT--AIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHHCTTCSHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHH--HHHHHHHHH
Confidence 8888888888888888888888888888888 88888888 678888888888888888 888888888
Q ss_pred hcCCChhhhhhchhhh-----ccCCh----------hhHHHHHHHHhh
Q psy8160 289 TSIASCKHINNNKDFS-----NNSNR----------EDYHQALNKYRD 321 (324)
Q Consensus 289 ~~~p~~~~~~~~l~~~-----~~~~~----------~~~~~a~~~~~~ 321 (324)
+.+|+++.....+... ..... +++++|+..|+.
T Consensus 406 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 453 (537)
T 3fp2_A 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTK 453 (537)
T ss_dssp HHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHH
T ss_pred HcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHH
Confidence 8888777665555311 11223 788888887765
No 17
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.2e-28 Score=227.09 Aligned_cols=250 Identities=14% Similarity=0.032 Sum_probs=120.3
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
++|++.|+++++.+|+ +..++..++.++...|++++|+..|++++ .+|.+...+..++.++...|++++|++.|++
T Consensus 322 ~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 398 (597)
T 2xpi_A 322 IDVLAITTKILEIDPY---NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSK 398 (597)
T ss_dssp HHHHHHHHHHHHHCTT---CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcc---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 4455555555544443 12234444445555555555555555544 4444444444455555555555555555555
Q ss_pred HHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHH
Q psy8160 110 CLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHC 189 (324)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~ 189 (324)
++...|... .++..+|.++...|++++|++.|++++... |++ ..++..+|.++.. .|++++|+..
T Consensus 399 ~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~l~~~~~~-------~g~~~~A~~~ 463 (597)
T 2xpi_A 399 SSTMDPQFG----PAWIGFAHSFAIEGEHDQAISAYTTAARLF--QGT--HLPYLFLGMQHMQ-------LGNILLANEY 463 (597)
T ss_dssp HHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--TTC--SHHHHHHHHHHHH-------HTCHHHHHHH
T ss_pred HHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccc--hHHHHHHHHHHHH-------cCCHHHHHHH
Confidence 544443332 344445555555555555555555554444 433 2244444444433 2244555555
Q ss_pred HHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc------CCCC-HHHHHHhHHHHhhcCCCHHHHHHHH---
Q psy8160 190 LQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK------SEGN-ADTWCSIGNKDFSNNSNREDYHQAL--- 259 (324)
Q Consensus 190 ~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~-~~~~~~lg~~~~~~~~~~~~A~~~~--- 259 (324)
|+++++..|.++.+|..+|.++...|++++|+..|+++++. +|++ +.+|..+|.++...|+ +++|+..|
T Consensus 464 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~ 542 (597)
T 2xpi_A 464 LQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM-YDAAIDALNQG 542 (597)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC-HHHHHHHHHHH
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC-HHHHHHHHHHH
Confidence 55555555555555555555555555555555555555444 3332 3444555555555555 55554444
Q ss_pred --------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhch
Q psy8160 260 --------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNK 301 (324)
Q Consensus 260 --------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 301 (324)
.+|..+|.+|...|++++ |++.|+++++++|+++.+...+
T Consensus 543 ~~~~p~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~l~~~p~~~~~~~~l 590 (597)
T 2xpi_A 543 LLLSTNDANVHTAIALVYLHKKIPGL--AITHLHESLAISPNEIMASDLL 590 (597)
T ss_dssp HHHSSCCHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHhCCHHH--HHHHHHHHHhcCCCChHHHHHH
Confidence 444455555555555555 5555555555555544444443
No 18
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.97 E-value=1.2e-28 Score=227.13 Aligned_cols=269 Identities=10% Similarity=0.022 Sum_probs=248.7
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 109 (324)
++|++.|.++++. | .+..++..+|.++...|++++|+..|++++ .+|.+...+..++.++...|++++|+..+++
T Consensus 289 ~~A~~~~~~~~~~-~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (597)
T 2xpi_A 289 RRAEDYLSSINGL-E---KSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISND 364 (597)
T ss_dssp HHHHHHHHTSTTG-G---GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhcC-C---chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 8899999999887 3 356789999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHH
Q psy8160 110 CLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHC 189 (324)
Q Consensus 110 ~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~ 189 (324)
++...|... .++..+|.++...|++++|+..|++++..+ |.+ ..++..++.++.. .|++++|+..
T Consensus 365 ~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~l~~~~~~-------~g~~~~A~~~ 429 (597)
T 2xpi_A 365 LVDRHPEKA----VTWLAVGIYYLCVNKISEARRYFSKSSTMD--PQF--GPAWIGFAHSFAI-------EGEHDQAISA 429 (597)
T ss_dssp HHHHCTTSH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------HTCHHHHHHH
T ss_pred HHhhCcccH----HHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCC--HHHHHHHHHHHHH-------cCCHHHHHHH
Confidence 998877765 889999999999999999999999999988 877 4499999999977 4599999999
Q ss_pred HHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH----------
Q psy8160 190 LQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL---------- 259 (324)
Q Consensus 190 ~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~---------- 259 (324)
|+++++..|.+..+|..+|.++...|++++|+..|+++++.+|.++.+|..+|.++...|+ +++|+..|
T Consensus 430 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~ 508 (597)
T 2xpi_A 430 YTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSD-MQTAINHFQNALLLVKKT 508 (597)
T ss_dssp HHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999998
Q ss_pred --------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhhc
Q psy8160 260 --------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRDL 322 (324)
Q Consensus 260 --------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 322 (324)
.+|..+|.+|...|++++ |+..|+++++.+|+++.+...++... ...|++++|+..|+.+
T Consensus 509 ~~~p~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 509 QSNEKPWAATWANLGHAYRKLKMYDA--AIDALNQGLLLSTNDANVHTAIALVY-LHKKIPGLAITHLHES 576 (597)
T ss_dssp CCCSGGGHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHSSCCHHHHHHHHHHH-HHTTCHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHhCCCChHHHHHHHHHH-HHhCCHHHHHHHHHHH
Confidence 368899999999999999 99999999999999999998888764 3568899999888753
No 19
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.1e-29 Score=224.25 Aligned_cols=289 Identities=13% Similarity=0.054 Sum_probs=210.0
Q ss_pred ccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCC--------
Q psy8160 15 TSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASP-------- 83 (324)
Q Consensus 15 ~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~-------- 83 (324)
++..+..+|...+..+ ++|++.|+++++++|+ ...+++.+|.++...|++++|+..|++++ .+|.+
T Consensus 38 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 114 (514)
T 2gw1_A 38 DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD---YSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML 114 (514)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHH
T ss_pred cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH---HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHH
Confidence 4555555665555555 7777777777777765 33466777777777777777777777776 55422
Q ss_pred -----------------------------------------------------------------------chhhHHHHH
Q psy8160 84 -----------------------------------------------------------------------CTFTKLEGL 92 (324)
Q Consensus 84 -----------------------------------------------------------------------~~~~~~la~ 92 (324)
...+..+|.
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194 (514)
T ss_dssp HHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 222333444
Q ss_pred HHHh---cccHHHHHHHHHHHHH-----h--cCCCc---ccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh
Q psy8160 93 MFKV---NNEYDSALKHLTLCLI-----D--ASPCT---FTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK 159 (324)
Q Consensus 93 ~~~~---~~~~~~A~~~~~~~l~-----~--~~~~~---~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 159 (324)
.+.. .|++++|+..|++++. . .|... .....+++.+|.++...|++++|+..|++++..+ |.
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~--- 269 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PR--- 269 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CC---
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cc---
Confidence 4443 6777777777777766 3 33221 2334677778888888888888888888888877 65
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWC 239 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 239 (324)
..++..+|.++.. .+++++|+..+++++..+|.++.++..+|.++...|++++|+..|++++..+|.++.++.
T Consensus 270 ~~~~~~l~~~~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 342 (514)
T 2gw1_A 270 VNSYIYMALIMAD-------RNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYI 342 (514)
T ss_dssp HHHHHHHHHHHHT-------SSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHH
T ss_pred HHHHHHHHHHHHH-------CCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHH
Confidence 4477888888765 447788888888888888888888888888888888888888888888888888888888
Q ss_pred HhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhh------hhhchh
Q psy8160 240 SIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKH------INNNKD 302 (324)
Q Consensus 240 ~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~l~ 302 (324)
.+|.++...|+ +++|+..| .++..+|.++...|++++ |+..|+++++..|+++. +...++
T Consensus 343 ~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~--A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 419 (514)
T 2gw1_A 343 QLACLAYRENK-FDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDK--ALKQYDLAIELENKLDGIYVGIAPLVGKA 419 (514)
T ss_dssp HHHHHTTTTTC-HHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHTSSSCSSCSHHHHHHH
T ss_pred HHHHHHHHcCC-HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 88888888888 88888888 678888888888888888 99999888888888765 555565
Q ss_pred hhccCC--hhhHHHHHHHHhh
Q psy8160 303 FSNNSN--REDYHQALNKYRD 321 (324)
Q Consensus 303 ~~~~~~--~~~~~~a~~~~~~ 321 (324)
...... .|++++|+..|+.
T Consensus 420 ~~~~~~~~~~~~~~A~~~~~~ 440 (514)
T 2gw1_A 420 TLLTRNPTVENFIEATNLLEK 440 (514)
T ss_dssp HHHHTSCCTTHHHHHHHHHHH
T ss_pred HHHhhhhhcCCHHHHHHHHHH
Confidence 544321 6888888887765
No 20
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.97 E-value=9.2e-29 Score=210.50 Aligned_cols=259 Identities=16% Similarity=0.168 Sum_probs=179.4
Q ss_pred ccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHH
Q psy8160 17 VRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLM 93 (324)
Q Consensus 17 ~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~ 93 (324)
..+..+|...+..+ ++|+..|+++++.+|+ ...+++.+|.++...|++++|+..|++++ .+|.+..++..+|.+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 98 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPE---REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS 98 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence 33344444433333 7777777777777765 34567777777777777777777777777 777777777777777
Q ss_pred HHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH--------------HH-HHHHhhcHHHHHHHHHHHHhcCCCCCch
Q psy8160 94 FKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI--------------AH-LHEVQRKYKTAKDSYEQLLKEDDLPVHL 158 (324)
Q Consensus 94 ~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l--------------a~-~~~~~~~~~~A~~~~~~al~~~~~~~~~ 158 (324)
+...|++++|+..+++++...|... ..+..+ +. ++...|++++|+..+++++... |.+
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~- 171 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQYE----QLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN--PND- 171 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTTTT----TC--------------------CCTTSHHHHHHHHHHHHHHHHHS--TTC-
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccH----HHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC--CCC-
Confidence 7777777777777777777666554 222222 44 4666777777777777777776 665
Q ss_pred hhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q psy8160 159 KADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTW 238 (324)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 238 (324)
..++..+|.++.. .+++++|+.+++++++.+|.++.++..+|.++...|++++|+..|++++..+|+++.+|
T Consensus 172 -~~~~~~la~~~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 243 (327)
T 3cv0_A 172 -AQLHASLGVLYNL-------SNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVM 243 (327)
T ss_dssp -HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred -HHHHHHHHHHHHH-------hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 3477777777755 34777777777777777777777777777777777777777777777777777777777
Q ss_pred HHhHHHHhhcCCCHHHHHHHH--------H---------------HHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChh
Q psy8160 239 CSIGNKDFSNNSNREDYHQAL--------N---------------KYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCK 295 (324)
Q Consensus 239 ~~lg~~~~~~~~~~~~A~~~~--------~---------------~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (324)
..+|.++...|+ +++|+..| . +|..+|.++...|++++ |...++++++..|++.
T Consensus 244 ~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~l~~~~~~~ 320 (327)
T 3cv0_A 244 YNMAVSYSNMSQ-YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL--VELTYAQNVEPFAKEF 320 (327)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH--HHHHTTCCSHHHHHHT
T ss_pred HHHHHHHHHhcc-HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH--HHHHHHHHHHhcchhh
Confidence 777777777777 77777666 2 45667777777777777 7777777777666554
Q ss_pred h
Q psy8160 296 H 296 (324)
Q Consensus 296 ~ 296 (324)
.
T Consensus 321 ~ 321 (327)
T 3cv0_A 321 G 321 (327)
T ss_dssp T
T ss_pred h
Confidence 3
No 21
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.97 E-value=1.6e-28 Score=197.58 Aligned_cols=194 Identities=14% Similarity=0.130 Sum_probs=174.6
Q ss_pred cchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q psy8160 49 RANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFH 127 (324)
Q Consensus 49 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 127 (324)
.++++++.+|.++...|++++|+..|++++ .+|++..++..+|.++...|++++|+..|++++...|... .+++.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~ 78 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL----GGYMV 78 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----HHHHH
Confidence 356689999999999999999999999999 9999999999999999999999999999999999999876 89999
Q ss_pred HHHHHHHh-----------hcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhh
Q psy8160 128 IAHLHEVQ-----------RKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA 196 (324)
Q Consensus 128 la~~~~~~-----------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 196 (324)
+|.++... |++++|+..|+++++.+ |++ +.++..+|.++.. .|++++|+..|++++++
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~--~~~~~~lg~~~~~-------~g~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRY--APLHLQRGLVYAL-------LGERDKAEASLKQALAL 147 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--ccc--HHHHHHHHHHHHH-------cCChHHHHHHHHHHHhc
Confidence 99999999 99999999999999999 988 5599999999977 55999999999999999
Q ss_pred CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 197 DPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 197 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
+ .++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+ +++|+..|
T Consensus 148 ~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~-~~~A~~~~ 208 (217)
T 2pl2_A 148 E-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGK-AEEAARAA 208 (217)
T ss_dssp C-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------------
T ss_pred c-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC-HHHHHHHH
Confidence 9 9999999999999999999999999999999999999999999999999999 99988776
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.97 E-value=2.4e-28 Score=207.96 Aligned_cols=253 Identities=13% Similarity=0.031 Sum_probs=226.3
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
..+.++.+|.++...|++++|+..|++++ .+|.+..++..+|.++...|++++|+..+++++...|... .++..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~l 95 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI----AVHAAL 95 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCH----HHHHHH
Confidence 44578999999999999999999999999 9999999999999999999999999999999999988765 889999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHH--------------HH-HHHhhhhhcccchhHHHHHHHHHHH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQL--------------GW-MYHCIDTLGEKSHRETLAIHCLQKS 193 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~~~~~~~~A~~~~~~a 193 (324)
|.++...|++++|+..+++++... |.... .+..+ +. ++.. .+++++|+.+++++
T Consensus 96 a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~A~~~~~~~ 164 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRAWLLSQ--PQYEQ--LGSVNLQADVDIDDLNVQSEDFFFAA-------PNEYRECRTLLHAA 164 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTS--TTTTT--C--------------------CCTTS-------HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CccHH--HHHHHhHHHHHHHHHHHHHHhHHHHH-------cccHHHHHHHHHHH
Confidence 999999999999999999999988 76633 44444 33 3433 55999999999999
Q ss_pred hhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHH
Q psy8160 194 IEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-----------NKY 262 (324)
Q Consensus 194 l~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~ 262 (324)
++..|.++.++..+|.++...|++++|+..+++++..+|+++.+|..+|.++...|+ +++|+..| .+|
T Consensus 165 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~ 243 (327)
T 3cv0_A 165 LEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNR-PQEALDAYNRALDINPGYVRVM 243 (327)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHH
T ss_pred HhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 99999999 789
Q ss_pred HhhHHHHHHcCCCCcchHHHHHHHhhhcCCC------------hhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 263 RDLGDFLVINNIPTSNNNRQCYNSYSTSIAS------------CKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 263 ~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
..+|.+|...|++++ |+..|+++++..|+ ++.++..++.+. ...|++++|...++.
T Consensus 244 ~~l~~~~~~~g~~~~--A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 244 YNMAVSYSNMSQYDL--AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLL-NVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHTTCHHH--HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHH-HHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHH--HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHH-HhcCCHHHHHHHHHH
Confidence 999999999999999 99999999999999 788887777654 356889998887764
No 23
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.4e-28 Score=222.38 Aligned_cols=255 Identities=10% Similarity=0.046 Sum_probs=236.8
Q ss_pred HHHHHHHHHHhc-----c--CCCc----ccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcc
Q psy8160 31 IKAIKTFQQLLY-----V--DPSY----LRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNN 98 (324)
Q Consensus 31 ~~A~~~~~~~l~-----~--~p~~----~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~ 98 (324)
++|+..|.++++ + +|+. +....+++.+|.++...|++++|+..|++++ .+|. ..++..+|.++...|
T Consensus 206 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~ 284 (514)
T 2gw1_A 206 DKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRN 284 (514)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCC
Confidence 999999999999 6 6654 4557789999999999999999999999999 9999 888999999999999
Q ss_pred cHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcc
Q psy8160 99 EYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGE 178 (324)
Q Consensus 99 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 178 (324)
++++|+..+++++...|... .++..+|.++...|++++|+..|++++... |.+ ..++..+|.++..
T Consensus 285 ~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~l~~~~~~------ 350 (514)
T 2gw1_A 285 DSTEYYNYFDKALKLDSNNS----SVYYHRGQMNFILQNYDQAGKDFDKAKELD--PEN--IFPYIQLACLAYR------ 350 (514)
T ss_dssp CCTTGGGHHHHHHTTCTTCT----HHHHHHHHHHHHTTCTTHHHHHHHHHHHTC--SSC--SHHHHHHHHHTTT------
T ss_pred CHHHHHHHHHHHhhcCcCCH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--hhh--HHHHHHHHHHHHH------
Confidence 99999999999999888776 789999999999999999999999999998 877 4499999999976
Q ss_pred cchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH------HHHHhHHHHhh---cC
Q psy8160 179 KSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNAD------TWCSIGNKDFS---NN 249 (324)
Q Consensus 179 ~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~---~~ 249 (324)
.+++++|+..++++++..|.++.++..+|.++...|++++|+..|++++...|+++. +|..+|.++.. .|
T Consensus 351 -~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (514)
T 2gw1_A 351 -ENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429 (514)
T ss_dssp -TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT
T ss_pred -cCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC
Confidence 559999999999999999999999999999999999999999999999999998865 99999999999 99
Q ss_pred CCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhh
Q psy8160 250 SNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFS 304 (324)
Q Consensus 250 ~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 304 (324)
+ +++|+..| .++..+|.+|...|++++ |+..|+++++++|+++.+...+.+.
T Consensus 430 ~-~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~--A~~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 430 N-FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDE--AITLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp H-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHhccccHHHHHHHHHH
Confidence 9 99999999 788999999999999999 9999999999999999988776544
No 24
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.7e-27 Score=195.75 Aligned_cols=231 Identities=12% Similarity=0.086 Sum_probs=208.6
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCccc---HHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFT---KLEVR 125 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~---~~~~~ 125 (324)
.++.++.+|.++...|++++|+.+|++++ .+ .+..++..+|.++...|++++|+..+++++...|..... ...++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 45689999999999999999999999999 88 888999999999999999999999999999877655322 25789
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHH
Q psy8160 126 FHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLY 205 (324)
Q Consensus 126 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 205 (324)
..+|.++...|++++|+..|++++... |.. .++.. .+++++|+..+++++..+|.++.++.
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~----------~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~ 143 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA----------DILTK-------LRNAEKELKKAEAEAYVNPEKAEEAR 143 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH----------HHHHH-------HHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--chh----------HHHHH-------HhHHHHHHHHHHHHHHcCcchHHHHH
Confidence 999999999999999999999999988 652 23333 34899999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCC
Q psy8160 206 LLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNI 274 (324)
Q Consensus 206 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~ 274 (324)
.+|.++...|++++|+..|++++..+|.++.+|..+|.++...|+ +++|+..| .+|..+|.+|...|+
T Consensus 144 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~ 222 (258)
T 3uq3_A 144 LEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS-FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE 222 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999 99999999 789999999999999
Q ss_pred CCcchHHHHHHHhhhcC------CChhhhhhchhh
Q psy8160 275 PTSNNNRQCYNSYSTSI------ASCKHINNNKDF 303 (324)
Q Consensus 275 ~~~~~A~~~~~~al~~~------p~~~~~~~~l~~ 303 (324)
+++ |+..|+++++++ |+++.+...+..
T Consensus 223 ~~~--A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 223 YAS--ALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHH--HHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 999 999999999999 888877766543
No 25
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=2.1e-27 Score=212.73 Aligned_cols=288 Identities=11% Similarity=0.023 Sum_probs=225.8
Q ss_pred hhhhHhHHHHH--HHHHHHHHHHhccCCC------cccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cC--------CC
Q psy8160 20 PKLQQFGKTLN--IKAIKTFQQLLYVDPS------YLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-ID--------AS 82 (324)
Q Consensus 20 ~~l~~~~~~~~--~~A~~~~~~~l~~~p~------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~--------~~ 82 (324)
..||.+....+ ++|++.|++++++.+. .+.....+..+|.+|..+|++++|+.+|++++ +. +.
T Consensus 55 n~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~ 134 (472)
T 4g1t_A 55 NLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIE 134 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchh
Confidence 34666655555 9999999999987431 23345578899999999999999999999998 53 23
Q ss_pred CchhhHHHHHHHHh--cccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHh---hcHHHHHHHHHHHHhcCCCCCc
Q psy8160 83 PCTFTKLEGLMFKV--NNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQ---RKYKTAKDSYEQLLKEDDLPVH 157 (324)
Q Consensus 83 ~~~~~~~la~~~~~--~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~---~~~~~A~~~~~~al~~~~~~~~ 157 (324)
....+..+|..+.. .++|++|+++|++++...|.+. +++..+|.++... ++.++|++.|++++.++ |++
T Consensus 135 ~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~----~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~--p~~ 208 (472)
T 4g1t_A 135 SPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNP----EFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN--PDN 208 (472)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--SSC
T ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--Ccc
Confidence 33445555655544 4689999999999999998876 7888888776554 56788999999999999 887
Q ss_pred hhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH
Q psy8160 158 LKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADT 237 (324)
Q Consensus 158 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 237 (324)
. .++..+|..+.. .+...+++++|+.++++++..+|.++.++..+|.++...|++++|+..|+++++.+|+++.+
T Consensus 209 ~--~~~~~l~~~~~~---~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 283 (472)
T 4g1t_A 209 Q--YLKVLLALKLHK---MREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYL 283 (472)
T ss_dssp H--HHHHHHHHHHHH---CC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred h--HHHHHHHHHHHH---HHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHH
Confidence 4 477778776643 23335588999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHHHHhhc-------------------CCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHh
Q psy8160 238 WCSIGNKDFSN-------------------NSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSY 287 (324)
Q Consensus 238 ~~~lg~~~~~~-------------------~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~a 287 (324)
+..+|.+|... +. +++|+..| .++..+|.+|...|++++ |+.+|+++
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~--A~~~~~ka 360 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLEL-IGHAVAHLKKADEANDNLFRVCSILASLHALADQYEE--AEYYFQKE 360 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHH-HHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh-HHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHH--HHHHHHHH
Confidence 99999998653 33 45666666 567899999999999999 99999999
Q ss_pred hhcCCChhhh---hhchhhhccCChhhHHHHHHHHhh
Q psy8160 288 STSIASCKHI---NNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 288 l~~~p~~~~~---~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
++.+|++... ..+++.+.....+++++|+..|++
T Consensus 361 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~k 397 (472)
T 4g1t_A 361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIE 397 (472)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999876543 333433333456889999988865
No 26
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.95 E-value=3.1e-27 Score=205.11 Aligned_cols=235 Identities=11% Similarity=0.055 Sum_probs=205.0
Q ss_pred chhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhcc-HHHHHHHHHHHh-cCCCCchhhHHHHHHH
Q psy8160 19 VPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNE-YDSALKHLTLCL-IDASPCTFTKLEGLMF 94 (324)
Q Consensus 19 ~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al-~~~~~~~~~~~la~~~ 94 (324)
+..+|.+....+ ++|++.|+++++++|+ ...+|+.+|.++..+|+ +++|+.+|++++ ++|++..++..+|.++
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~P~---~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELNAA---NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhCcc---CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 334444333333 9999999999999987 45689999999999996 999999999999 9999999999999999
Q ss_pred HhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhh
Q psy8160 95 KVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCID 174 (324)
Q Consensus 95 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~ 174 (324)
...|++++|+.+|++++..+|.+. .+|+++|.++...|++++|+.+|++++.++ |.+ ..+|..+|.++..+.
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~~~----~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~--~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAKNY----HAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRN--NSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTC--HHHHHHHHHHHHHTT
T ss_pred HHccCHHHHHHHHHHHHHhCccCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCC--HHHHHHHHHHHHHhc
Confidence 999999999999999999999887 899999999999999999999999999999 988 559999999996621
Q ss_pred hhcccchhHHHH-----HHHHHHHhhhCCccHHHHHHHHHHHHHcC--CHHHHHHHHHHHHccCCCCHHHHHHhHHHHhh
Q psy8160 175 TLGEKSHRETLA-----IHCLQKSIEADPKSGQSLYLLGRCFAAVG--KVHDAFLAYRNSVEKSEGNADTWCSIGNKDFS 247 (324)
Q Consensus 175 ~~~~~~~~~~~A-----~~~~~~al~~~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 247 (324)
| ..++| +.+|++++.++|++..+|+.+|.++...| ++++|+..++++ +.+|+++.++..+|.+|..
T Consensus 249 --~----~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~ 321 (382)
T 2h6f_A 249 --G----YNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYED 321 (382)
T ss_dssp --C----SCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHH
T ss_pred --C----cchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHH
Confidence 1 22455 69999999999999999999999999988 699999999998 9999999999999999999
Q ss_pred cC---------CCHHHHHHHH------------HHHHhhHHHHHHc
Q psy8160 248 NN---------SNREDYHQAL------------NKYRDLGDFLVIN 272 (324)
Q Consensus 248 ~~---------~~~~~A~~~~------------~~~~~lg~~~~~~ 272 (324)
.| . +++|+++| ..|..++..+..+
T Consensus 322 ~~~~~~~~~~~~-~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 322 MLENQCDNKEDI-LNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHTTCSSHHHH-HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HhcccccchHHH-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 75 3 48898887 4566666665443
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=2.6e-27 Score=212.24 Aligned_cols=258 Identities=15% Similarity=0.060 Sum_probs=196.6
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHh---ccHHHHHHHHHHHh-cCCCCchhhHHHHHHHH----hcccHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVN---NEYDSALKHLTLCL-IDASPCTFTKLEGLMFK----VNNEYDS 102 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~---~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~----~~~~~~~ 102 (324)
++|++.|+++++++|+. ++++..+|.++... +++++|++.|++++ ++|.+..++..+|..+. ..|++++
T Consensus 155 ~~A~~~~~kal~~~p~~---~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~ 231 (472)
T 4g1t_A 155 ERAKVCFEKALEKKPKN---PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGE 231 (472)
T ss_dssp HHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CH
T ss_pred HHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHH
Confidence 89999999999999874 56788888886654 56688999999999 99999998888776554 4578899
Q ss_pred HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhh------
Q psy8160 103 ALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTL------ 176 (324)
Q Consensus 103 A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~------ 176 (324)
|++.+++++...|... .++..+|.++...|++++|+..|++++... |++ +.++..+|.+|......
T Consensus 232 a~~~~~~al~~~~~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~--~~~~~~lg~~y~~~~~~~~~~~~ 303 (472)
T 4g1t_A 232 GEKLVEEALEKAPGVT----DVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNN--AYLHCQIGCCYRAKVFQVMNLRE 303 (472)
T ss_dssp HHHHHHHHHHHCSSCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTC--HHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhCccHH----HHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CCh--HHHHHHHHHHHHHHHHHhhhHHH
Confidence 9999999999988876 889999999999999999999999999999 888 55999999988542110
Q ss_pred ------cccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH---HHHHhHHH-Hh
Q psy8160 177 ------GEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNAD---TWCSIGNK-DF 246 (324)
Q Consensus 177 ------~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~lg~~-~~ 246 (324)
......+++|+..++++++.+|.++.++..+|.++...|++++|+.+|++++.++|++.. .+..+|.+ +.
T Consensus 304 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~ 383 (472)
T 4g1t_A 304 NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLY 383 (472)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 011346789999999999999999999999999999999999999999999999987654 45667755 45
Q ss_pred hcCCCHHHHHHHH-----------------------------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcC
Q psy8160 247 SNNSNREDYHQAL-----------------------------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSI 291 (324)
Q Consensus 247 ~~~~~~~~A~~~~-----------------------------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~ 291 (324)
..|+ +++|+..| .+|.+||.+|...|++++ |+++|++|+++.
T Consensus 384 ~~~~-~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~--A~~~y~kALe~~ 460 (472)
T 4g1t_A 384 QMKC-EDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQ--ADEDSERGLESG 460 (472)
T ss_dssp TSSC-HHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HCCC-HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH--HHHHHHHHHhcC
Confidence 7888 99999888 478899999999999999 999999999999
Q ss_pred CChhhhhhchh
Q psy8160 292 ASCKHINNNKD 302 (324)
Q Consensus 292 p~~~~~~~~l~ 302 (324)
|.+|.+...++
T Consensus 461 ~~~p~a~~~~G 471 (472)
T 4g1t_A 461 SLIPSASSWNG 471 (472)
T ss_dssp -----------
T ss_pred CCCCcHhhcCC
Confidence 99998776554
No 28
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.95 E-value=2.1e-26 Score=185.21 Aligned_cols=205 Identities=11% Similarity=0.057 Sum_probs=160.9
Q ss_pred CCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhh
Q psy8160 81 ASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKA 160 (324)
Q Consensus 81 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 160 (324)
|.+..++..+|.++...|++++|+..|++++...|.+. .+++.+|.++...|++++|+..|++++..+ |++ +
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~--~ 73 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDP----EALYWLARTQLKLGLVNPALENGKTLVART--PRY--L 73 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC--H
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCc--H
Confidence 67788899999999999999999999999999998886 899999999999999999999999999999 988 5
Q ss_pred HHHHHHHHHHHhhhhhc----ccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q psy8160 161 DICRQLGWMYHCIDTLG----EKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNAD 236 (324)
Q Consensus 161 ~~~~~l~~~~~~~~~~~----~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 236 (324)
.++..+|.++....... ...|++++|+..++++++.+|+++.+|+.+|.++...|++++|+..|+++++++ +++.
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~ 152 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPE 152 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHH
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchH
Confidence 59999999997720000 000699999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHH
Q psy8160 237 TWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQAL 316 (324)
Q Consensus 237 ~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~ 316 (324)
++..+|.++...|+ +++ |+..|+++++.+|+++.+..+++.+. ...|++++|+
T Consensus 153 ~~~~la~~~~~~g~-~~~-------------------------A~~~~~~al~~~P~~~~~~~~la~~~-~~~g~~~~A~ 205 (217)
T 2pl2_A 153 IRSALAELYLSMGR-LDE-------------------------ALAQYAKALEQAPKDLDLRVRYASAL-LLKGKAEEAA 205 (217)
T ss_dssp HHHHHHHHHHHHTC-HHH-------------------------HHHHHHHHHHHSTTCHHHHHHHHHHH-TC--------
T ss_pred HHHHHHHHHHHcCC-HHH-------------------------HHHHHHHHHHhCCCChHHHHHHHHHH-HHccCHHHHH
Confidence 99999999888888 555 55555555555555555555554432 3445555555
Q ss_pred HHHhh
Q psy8160 317 NKYRD 321 (324)
Q Consensus 317 ~~~~~ 321 (324)
..|+.
T Consensus 206 ~~~~~ 210 (217)
T 2pl2_A 206 RAAAL 210 (217)
T ss_dssp -----
T ss_pred HHHHH
Confidence 55543
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.94 E-value=4.3e-25 Score=185.42 Aligned_cols=259 Identities=13% Similarity=0.086 Sum_probs=184.8
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLC 110 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 110 (324)
.+|+..++++...+|+. ..+....++.+|...|+++.|+..++. .+|....+...++..+...+++++|++.++++
T Consensus 16 ~~ai~~~~~~~~~~p~~--~~e~~~~l~r~yi~~g~~~~al~~~~~--~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~l 91 (291)
T 3mkr_A 16 QQCINEAQRVKPSSPER--DVERDVFLYRAYLAQRKYGVVLDEIKP--SSAPELQAVRMFAEYLASHSRRDAIVAELDRE 91 (291)
T ss_dssp HHHHHHHHHSCCCSHHH--HHHHHHHHHHHHHHTTCHHHHHHHSCT--TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCCchh--hHHHHHHHHHHHHHCCCHHHHHHHhcc--cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 77777777776666542 234666777788888888877776654 24445556666777777777788888888777
Q ss_pred HHhc--CCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHH
Q psy8160 111 LIDA--SPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIH 188 (324)
Q Consensus 111 l~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~ 188 (324)
+... |.+. .+++.+|.++...|++++|+..+++ |++ ..++..+|.++.. .|++++|+.
T Consensus 92 l~~~~~P~~~----~~~~~la~~~~~~g~~~~Al~~l~~-------~~~--~~~~~~l~~~~~~-------~g~~~~A~~ 151 (291)
T 3mkr_A 92 MSRSVDVTNT----TFLLMAASIYFYDQNPDAALRTLHQ-------GDS--LECMAMTVQILLK-------LDRLDLARK 151 (291)
T ss_dssp HHSCCCCSCH----HHHHHHHHHHHHTTCHHHHHHHHTT-------CCS--HHHHHHHHHHHHH-------TTCHHHHHH
T ss_pred HhcccCCCCH----HHHHHHHHHHHHCCCHHHHHHHHhC-------CCC--HHHHHHHHHHHHH-------CCCHHHHHH
Confidence 7653 4443 6677778888888888888877766 444 3477777777765 447788888
Q ss_pred HHHHHhhhCCccHHHHHHHH--HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-------
Q psy8160 189 CLQKSIEADPKSGQSLYLLG--RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL------- 259 (324)
Q Consensus 189 ~~~~al~~~~~~~~~~~~lg--~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~------- 259 (324)
.++++++.+|++.......+ .++...|++++|+..|+++++.+|+++.+|.++|.++...|+ +++|+..|
T Consensus 152 ~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~-~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 152 ELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGR-WEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC
T ss_pred HHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC
Confidence 88888877777654433333 223344778888888888888888888888888888888888 88887777
Q ss_pred ----HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHh
Q psy8160 260 ----NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYR 320 (324)
Q Consensus 260 ----~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 320 (324)
+++.++|.++...|+..+ .+..+++++++++|++|.+.... .+.+.|+++..+|.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~e-aa~~~~~~~~~~~P~~~~~~d~~-----~~~~~fd~~~~~~~ 289 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPE-VTNRYLSQLKDAHRSHPFIKEYR-----AKENDFDRLVLQYA 289 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHH-HHHHHHHHHHHHCTTCHHHHHHH-----HHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHHhCCCChHHHHHH-----HHHHHHHHHHHHcC
Confidence 677788888888887765 04688899999999999987633 34578999998885
No 30
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.94 E-value=1.1e-25 Score=175.95 Aligned_cols=177 Identities=16% Similarity=0.240 Sum_probs=164.5
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
.+.+|+.+|.+|..+|++++|+++|++++ .+|++..++..+|.++...|++++|+..+++++...|... .++..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA----EAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH----HHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH----HHHHHH
Confidence 46789999999999999999999999999 9999999999999999999999999999999999888876 889999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
|.++...++++.|+..+.+++..+ |.+ ..++..+|.++.. .|++++|+..|+++++.+|.++.+|+.+|
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~--~~~--~~~~~~lg~~~~~-------~g~~~~A~~~~~~~l~~~p~~~~~~~~lg 148 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALN--TVY--ADAYYKLGLVYDS-------MGEHDKAIEAYEKTISIKPGFIRAYQSIG 148 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--ccc--hHHHHHHHHHHHH-------hCCchhHHHHHHHHHHhcchhhhHHHHHH
Confidence 999999999999999999999999 887 4499999999977 55999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHH
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 243 (324)
.++..+|++++|+..|+++++++|+++. +.+|.
T Consensus 149 ~~~~~~g~~~~A~~~~~~al~~~p~~a~--~~lal 181 (184)
T 3vtx_A 149 LAYEGKGLRDEAVKYFKKALEKEEKKAK--YELAL 181 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTHHHHH--HCSCC
T ss_pred HHHHHCCCHHHHHHHHHHHHhCCccCHH--HHHHh
Confidence 9999999999999999999999997653 44543
No 31
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.9e-25 Score=181.01 Aligned_cols=221 Identities=11% Similarity=0.069 Sum_probs=197.0
Q ss_pred cccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCC-------ch
Q psy8160 16 SVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASP-------CT 85 (324)
Q Consensus 16 ~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~-------~~ 85 (324)
++.+..+|...+..+ ++|++.|.++++.+ + ...+++.+|.++...|++++|+.+|++++ .+|.. ..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~---~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K---DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c---cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 344556676665555 99999999999998 3 35689999999999999999999999999 88776 57
Q ss_pred hhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHH
Q psy8160 86 FTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQ 165 (324)
Q Consensus 86 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 165 (324)
++..+|.++...|++++|+..+++++...|. +.++...|++++|+..+++++..+ |.. +.++..
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------------~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~ 144 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRT------------ADILTKLRNAEKELKKAEAEAYVN--PEK--AEEARL 144 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------------HHHHHHHHHHHHHHHHHHHHHHCC--HHH--HHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCch------------hHHHHHHhHHHHHHHHHHHHHHcC--cch--HHHHHH
Confidence 8888999999999999999999999987664 456778899999999999999988 776 559999
Q ss_pred HHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHH
Q psy8160 166 LGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245 (324)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 245 (324)
+|.++.. .+++++|+.+++++++.+|.++.++..+|.++...|++++|+..|++++..+|+++.+|..+|.++
T Consensus 145 ~~~~~~~-------~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~ 217 (258)
T 3uq3_A 145 EGKEYFT-------KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 217 (258)
T ss_dssp HHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHH-------hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 9999977 559999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCHHHHHHHHHHHHh
Q psy8160 246 FSNNSNREDYHQALNKYRD 264 (324)
Q Consensus 246 ~~~~~~~~~A~~~~~~~~~ 264 (324)
...|+ +++|+..|.....
T Consensus 218 ~~~g~-~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 218 IAVKE-YASALETLDAART 235 (258)
T ss_dssp HHTTC-HHHHHHHHHHHHH
T ss_pred HHHhh-HHHHHHHHHHHHH
Confidence 99999 9999999833333
No 32
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.94 E-value=3.3e-25 Score=183.94 Aligned_cols=225 Identities=14% Similarity=0.064 Sum_probs=196.3
Q ss_pred ccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchh----hH
Q psy8160 15 TSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTF----TK 88 (324)
Q Consensus 15 ~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~ 88 (324)
+++....+|...+..+ ++|+..|+++++.+|+. ..+++.+|.++...|++++|+..|++++..|.+... +.
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 78 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNS---PYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFE 78 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCC---STTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHH
Confidence 4556666777655555 99999999999999874 447999999999999999999999999944444333 77
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHH-
Q psy8160 89 LEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLG- 167 (324)
Q Consensus 89 ~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~- 167 (324)
.+|.++...|++++|++.|++++...|... .++..+|.++...|++++|+..|++++..+ |.+ ..++..+|
T Consensus 79 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~--~~~~~~l~~ 150 (272)
T 3u4t_A 79 YYGKILMKKGQDSLAIQQYQAAVDRDTTRL----DMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TTD--PKVFYELGQ 150 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCT----HHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--CCC--HHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCcccH----HHHHHHHHHHHHccCHHHHHHHHHHHhhcC--CCc--HHHHHHHHH
Confidence 899999999999999999999999988876 889999999999999999999999999998 887 45999999
Q ss_pred HHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHccC---CC-----CHH
Q psy8160 168 WMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGK---VHDAFLAYRNSVEKS---EG-----NAD 236 (324)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~---p~-----~~~ 236 (324)
.++.. +++++|+..++++++.+|.++.+++.+|.++...|+ +++|+..|+++++.. |+ ...
T Consensus 151 ~~~~~--------~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 222 (272)
T 3u4t_A 151 AYYYN--------KEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIE 222 (272)
T ss_dssp HHHHT--------TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHH
T ss_pred HHHHH--------HHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 66644 289999999999999999999999999999999999 899999999999886 44 236
Q ss_pred HHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 237 TWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 237 ~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
++..+|.+|...|+ +++|+.+|
T Consensus 223 ~~~~l~~~~~~~~~-~~~A~~~~ 244 (272)
T 3u4t_A 223 ANEYIAYYYTINRD-KVKADAAW 244 (272)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHH
Confidence 88999999999999 99999988
No 33
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.94 E-value=1.8e-25 Score=182.21 Aligned_cols=214 Identities=17% Similarity=0.185 Sum_probs=166.2
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
.+..++.+|.++...|++++|+.+|++++ .+|.+..++..+|.++...|++++|+..+++++...|... .++..+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l 97 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAA----TAYYGA 97 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcch----HHHHHH
Confidence 45578889999999999999999999999 8899988888899999999999999999999988877654 788888
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
|.++...|++++|+..|++++... |.+ ..++..+|.++.. .+++++|+..++++++..|.++.++..+|
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~~a~~~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 166 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAG--MEN--GDLFYMLGTVLVK-------LEQPKLALPYLQRAVELNENDTEARFQFG 166 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHT--CCS--HHHHHHHHHHHHH-------TSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC--CCC--HHHHHHHHHHHHH-------hccHHHHHHHHHHHHHhCCccHHHHHHHH
Confidence 999999999999999999999888 776 4488888888866 44889999999999999998899999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhh
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYS 288 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al 288 (324)
.++...|++++|+..+++++..+|+++.+|..+|.++...|+ +++ |+..|++++
T Consensus 167 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~------------------------~~~--A~~~~~~~~ 220 (243)
T 2q7f_A 167 MCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN------------------------REK--ALEMLDKAI 220 (243)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC------------------------TTH--HHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccC------------------------HHH--HHHHHHHHH
Confidence 999999999999999999999988888777777777666666 778 999999999
Q ss_pred hcCCChhhhhhchhhh
Q psy8160 289 TSIASCKHINNNKDFS 304 (324)
Q Consensus 289 ~~~p~~~~~~~~l~~~ 304 (324)
+.+|+++.+...+..+
T Consensus 221 ~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 221 DIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHCTTCHHHHHHHTC-
T ss_pred ccCcchHHHHHHHHHH
Confidence 9999998888777654
No 34
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.94 E-value=7.4e-26 Score=198.28 Aligned_cols=264 Identities=14% Similarity=0.078 Sum_probs=220.6
Q ss_pred hhhhHhHHHHH--HHHHHHHHHHhccCCCcccc-hHHHHHHHHHHHHhccHHHHHHHHHHHh-c------CCCCchhhHH
Q psy8160 20 PKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRA-NEVHLRLGLMFKVNNEYDSALKHLTLCL-I------DASPCTFTKL 89 (324)
Q Consensus 20 ~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al-~------~~~~~~~~~~ 89 (324)
..+|...+..+ ++|+..|++++++.|+.+.. ..++..+|.++...|++++|+.+|++++ . .|....++..
T Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 92 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 92 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 34455444444 99999999999999875432 4689999999999999999999999998 5 3444667778
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCCc--ccHHHHHHHHHHHHHHhhc--------------------HHHHHHHHHH
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDASPCT--FTKLEVRFHIAHLHEVQRK--------------------YKTAKDSYEQ 147 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~~~~--------------------~~~A~~~~~~ 147 (324)
+|.++...|++++|+.++++++...+... .....++..+|.++...|+ +++|+..+++
T Consensus 93 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 172 (406)
T 3sf4_A 93 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE 172 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999987654332 2345689999999999999 9999999999
Q ss_pred HHhcCCC-C-CchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH------HHHHHHHHHHHHcCCHHH
Q psy8160 148 LLKEDDL-P-VHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG------QSLYLLGRCFAAVGKVHD 219 (324)
Q Consensus 148 al~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~lg~~~~~~~~~~~ 219 (324)
++..... + ....+.++..+|.++.. .+++++|+.+++++++..|..+ .++..+|.++...|++++
T Consensus 173 al~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 173 NLSLVTALGDRAAQGRAFGNLGNTHYL-------LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH-------HTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHhccCcHHHHHHHHHHHHHHHH-------ccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 9876311 1 11225689999999977 4599999999999998766544 389999999999999999
Q ss_pred HHHHHHHHHccCCCC------HHHHHHhHHHHhhcCCCHHHHHHHH-----------------HHHHhhHHHHHHcCCCC
Q psy8160 220 AFLAYRNSVEKSEGN------ADTWCSIGNKDFSNNSNREDYHQAL-----------------NKYRDLGDFLVINNIPT 276 (324)
Q Consensus 220 A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~~A~~~~-----------------~~~~~lg~~~~~~~~~~ 276 (324)
|+..+++++.+.|.. +.++..+|.++...|+ +++|+..| .++..+|.+|...|+++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD-YEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 999999999987766 7789999999999999 99999998 47889999999999999
Q ss_pred cchHHHHHHHhhhcCCC
Q psy8160 277 SNNNRQCYNSYSTSIAS 293 (324)
Q Consensus 277 ~~~A~~~~~~al~~~p~ 293 (324)
+ |+.+|++++++.+.
T Consensus 325 ~--A~~~~~~al~~~~~ 339 (406)
T 3sf4_A 325 Q--AMHFAEKHLEISRE 339 (406)
T ss_dssp H--HHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHH
Confidence 9 99999999988543
No 35
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.94 E-value=2.9e-25 Score=199.03 Aligned_cols=216 Identities=9% Similarity=0.032 Sum_probs=196.6
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccH-HHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEY-DSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLT 108 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~-~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 108 (324)
++++..+.++....|+ ...+++.+|.++...|++ ++|+.+|++++ .+|.+..++..+|.++...|++++|+.+|+
T Consensus 85 ~~al~~l~~~~~~~~~---~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 85 EKTLQQMEEVLGSAQV---EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHTTCCC---CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCch---hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7788888888877764 567899999999999999 99999999999 999999999999999999999999999999
Q ss_pred HHHHhcCCCcccHHHHHHHHHHHHHHh---------hcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhh-hhhcc
Q psy8160 109 LCLIDASPCTFTKLEVRFHIAHLHEVQ---------RKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCI-DTLGE 178 (324)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~la~~~~~~---------~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 178 (324)
+++...|. . .++..+|.++... |++++|+..|++++..+ |++ +.++..+|.++... ...|.
T Consensus 162 ~al~~~p~-~----~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~lg~~~~~~~~~~~~ 232 (474)
T 4abn_A 162 GALTHCKN-K----VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLD--GRSWYILGNAYLSLYFNTGQ 232 (474)
T ss_dssp HHHTTCCC-H----HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhCCC-H----HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCC--HHHHHHHHHHHHHHHHhhcc
Confidence 99988766 2 7899999999999 99999999999999999 888 55999999999762 00111
Q ss_pred cchhHHHHHHHHHHHhhhCC---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHH
Q psy8160 179 KSHRETLAIHCLQKSIEADP---KSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDY 255 (324)
Q Consensus 179 ~~~~~~~A~~~~~~al~~~~---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A 255 (324)
..+++++|+.+|+++++++| .++.+|+.+|.++...|++++|+..|+++++++|+++.+|..++.++...|+ +++|
T Consensus 233 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~-~~eA 311 (474)
T 4abn_A 233 NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR-LTSL 311 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-HHHH
T ss_pred ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH-HHHH
Confidence 12699999999999999999 9999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHH
Q psy8160 256 HQAL 259 (324)
Q Consensus 256 ~~~~ 259 (324)
+..+
T Consensus 312 i~~~ 315 (474)
T 4abn_A 312 LESK 315 (474)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8865
No 36
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.94 E-value=8.1e-26 Score=192.47 Aligned_cols=264 Identities=14% Similarity=0.079 Sum_probs=217.5
Q ss_pred hhhHhHHHHH--HHHHHHHHHHhccCCCcccc-hHHHHHHHHHHHHhccHHHHHHHHHHHh-c------CCCCchhhHHH
Q psy8160 21 KLQQFGKTLN--IKAIKTFQQLLYVDPSYLRA-NEVHLRLGLMFKVNNEYDSALKHLTLCL-I------DASPCTFTKLE 90 (324)
Q Consensus 21 ~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al-~------~~~~~~~~~~l 90 (324)
..|...+..+ ++|+..|+++++..|+.+.. ..++..+|.++...|++++|+.++++++ . .|....++..+
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 3454444444 99999999999999874322 4688999999999999999999999998 5 34456677789
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhcCCCc--ccHHHHHHHHHHHHHHhhc--------------------HHHHHHHHHHH
Q psy8160 91 GLMFKVNNEYDSALKHLTLCLIDASPCT--FTKLEVRFHIAHLHEVQRK--------------------YKTAKDSYEQL 148 (324)
Q Consensus 91 a~~~~~~~~~~~A~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~~~~--------------------~~~A~~~~~~a 148 (324)
|.++...|++++|+..+++++...+... .....++..+|.++...|+ +++|+..++++
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999987654432 2345689999999999999 99999999998
Q ss_pred HhcCCC--CCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH------HHHHHHHHHHHHcCCHHHH
Q psy8160 149 LKEDDL--PVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG------QSLYLLGRCFAAVGKVHDA 220 (324)
Q Consensus 149 l~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~lg~~~~~~~~~~~A 220 (324)
+..... .....+.++..+|.++.. .+++++|+.+++++++..+... .++..+|.++...|++++|
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYL-------LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHH-------hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 865310 111225688899999977 4599999999999998765443 4899999999999999999
Q ss_pred HHHHHHHHccCCCC------HHHHHHhHHHHhhcCCCHHHHHHHH-----------------HHHHhhHHHHHHcCCCCc
Q psy8160 221 FLAYRNSVEKSEGN------ADTWCSIGNKDFSNNSNREDYHQAL-----------------NKYRDLGDFLVINNIPTS 277 (324)
Q Consensus 221 ~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~~A~~~~-----------------~~~~~lg~~~~~~~~~~~ 277 (324)
+..+++++.+.|.. +.++..+|.++...|+ +++|+..+ .++..+|.+|...|++++
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 321 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD-YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ 321 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99999999887765 7788999999999999 99999988 478899999999999999
Q ss_pred chHHHHHHHhhhcCCCh
Q psy8160 278 NNNRQCYNSYSTSIASC 294 (324)
Q Consensus 278 ~~A~~~~~~al~~~p~~ 294 (324)
|+.+|++++++.+..
T Consensus 322 --A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 322 --AMHFAEKHLEISREV 336 (338)
T ss_dssp --HHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHhh
Confidence 999999999988753
No 37
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.94 E-value=1.3e-25 Score=197.60 Aligned_cols=254 Identities=16% Similarity=0.119 Sum_probs=217.7
Q ss_pred HHHHHHHHHHhccCCCccc-chHHHHHHHHHHHHhccHHHHHHHHHHHh-c------CCCCchhhHHHHHHHHhcccHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLR-ANEVHLRLGLMFKVNNEYDSALKHLTLCL-I------DASPCTFTKLEGLMFKVNNEYDS 102 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~------~~~~~~~~~~la~~~~~~~~~~~ 102 (324)
++|+..|++++++.|+.+. ...+++.+|.++...|++++|+.+|++++ . +|....++..+|.++...|++++
T Consensus 65 ~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 144 (411)
T 4a1s_A 65 RAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDE 144 (411)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999987432 23589999999999999999999999999 6 56667788889999999999999
Q ss_pred HHHHHHHHHHhcCCC--cccHHHHHHHHHHHHHHhhc-----------------HHHHHHHHHHHHhcCCC--CCchhhH
Q psy8160 103 ALKHLTLCLIDASPC--TFTKLEVRFHIAHLHEVQRK-----------------YKTAKDSYEQLLKEDDL--PVHLKAD 161 (324)
Q Consensus 103 A~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~~~~-----------------~~~A~~~~~~al~~~~~--~~~~~~~ 161 (324)
|+.++++++...+.. ......++..+|.++...|+ +++|+.++++++..... .....+.
T Consensus 145 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 224 (411)
T 4a1s_A 145 AAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGR 224 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999998763221 22345789999999999999 99999999999875310 1112256
Q ss_pred HHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHH------HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-
Q psy8160 162 ICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQ------SLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN- 234 (324)
Q Consensus 162 ~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~- 234 (324)
++..+|.++.. .+++++|+.+++++++..|.... ++..+|.++...|++++|+..|++++.+.|..
T Consensus 225 ~~~~la~~~~~-------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 297 (411)
T 4a1s_A 225 ACGNLGNTYYL-------LGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG 297 (411)
T ss_dssp HHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-------cCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 88999999977 55999999999999998776543 89999999999999999999999999988754
Q ss_pred -----HHHHHHhHHHHhhcCCCHHHHHHHH-----------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCC
Q psy8160 235 -----ADTWCSIGNKDFSNNSNREDYHQAL-----------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIA 292 (324)
Q Consensus 235 -----~~~~~~lg~~~~~~~~~~~~A~~~~-----------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p 292 (324)
..++..+|.++...|+ +++|+.+| .++..+|.+|...|++++ |+.+|++++++.+
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~--A~~~~~~al~~~~ 374 (411)
T 4a1s_A 298 EREVEAQSCYSLGNTYTLLHE-FNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHER--ALKYAEQHLQLAX 374 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHH--HHHHHHHHHHHHh
Confidence 6788999999999999 99999998 488999999999999999 9999999999887
Q ss_pred Ch
Q psy8160 293 SC 294 (324)
Q Consensus 293 ~~ 294 (324)
..
T Consensus 375 ~~ 376 (411)
T 4a1s_A 375 XX 376 (411)
T ss_dssp HH
T ss_pred hc
Confidence 53
No 38
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.94 E-value=8.3e-24 Score=175.91 Aligned_cols=227 Identities=12% Similarity=0.074 Sum_probs=197.4
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHh----cccHHHHHHHHHHHHHhcCCCcccHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKV----NNEYDSALKHLTLCLIDASPCTFTKLEVR 125 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 125 (324)
.+++++.+|.++...|++++|+.+|++++. |.+..++..+|.++.. .+++++|+.+|++++... . ..++
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~----~~a~ 77 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD-LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--Y----SNGC 77 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C----HHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--C----HHHH
Confidence 566899999999999999999999999985 6667888889999999 999999999999998764 2 3789
Q ss_pred HHHHHHHHH----hhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH
Q psy8160 126 FHIAHLHEV----QRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG 201 (324)
Q Consensus 126 ~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 201 (324)
+.+|.++.. .+++++|+..|++++..+ + +.++..+|.++.... + ..+++++|+.+|+++++.. ++
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~--~~a~~~lg~~~~~~~--~-~~~~~~~A~~~~~~a~~~~--~~ 146 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK----Y--AEGCASLGGIYHDGK--V-VTRDFKKAVEYFTKACDLN--DG 146 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----C--HHHHHHHHHHHHHCS--S-SCCCHHHHHHHHHHHHHTT--CH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC----C--ccHHHHHHHHHHcCC--C-cccCHHHHHHHHHHHHhcC--cH
Confidence 999999999 999999999999999875 2 458999999986510 0 1348999999999999876 67
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhh----cCCCHHHHHHHH---------HHHHh
Q psy8160 202 QSLYLLGRCFAA----VGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFS----NNSNREDYHQAL---------NKYRD 264 (324)
Q Consensus 202 ~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~~A~~~~---------~~~~~ 264 (324)
.+++.+|.++.. .+++++|+.+|+++++. +++.+++.+|.+|.. .++ +++|+.+| .++++
T Consensus 147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~-~~~A~~~~~~a~~~~~~~a~~~ 223 (273)
T 1ouv_A 147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKN-FKEALARYSKACELENGGGCFN 223 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCC-HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCcc-HHHHHHHHHHHHhCCCHHHHHH
Confidence 889999999998 99999999999999887 468999999999999 999 99999999 78899
Q ss_pred hHHHHHH----cCCCCcchHHHHHHHhhhcCCChhhhhh
Q psy8160 265 LGDFLVI----NNIPTSNNNRQCYNSYSTSIASCKHINN 299 (324)
Q Consensus 265 lg~~~~~----~~~~~~~~A~~~~~~al~~~p~~~~~~~ 299 (324)
+|.+|.. .+++++ |+.+|+++++..|+++...-
T Consensus 224 l~~~~~~g~~~~~~~~~--A~~~~~~a~~~~~~~a~~~l 260 (273)
T 1ouv_A 224 LGAMQYNGEGVTRNEKQ--AIENFKKGCKLGAKGACDIL 260 (273)
T ss_dssp HHHHHHTTSSSSCCSTT--HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHcCCCcccCHHH--HHHHHHHHHHcCCHHHHHHH
Confidence 9999999 999999 99999999999998765443
No 39
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.93 E-value=1e-24 Score=170.46 Aligned_cols=174 Identities=16% Similarity=0.163 Sum_probs=131.2
Q ss_pred CchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHH
Q psy8160 83 PCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADI 162 (324)
Q Consensus 83 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 162 (324)
+..++..+|.++...|++++|++.|++++..+|.+. .++..+|.++...|++++|+..+.+++... |.. ..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~ 75 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNV----ETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTS--AEA 75 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCC--HHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chh--HHH
Confidence 344566677777777777777777777777777665 677777777777777777777777777777 665 347
Q ss_pred HHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhH
Q psy8160 163 CRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242 (324)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 242 (324)
+..+|.++.. .++++.|+..+.+++..+|.++.++..+|.++...|++++|+..|+++++++|+++.+|..+|
T Consensus 76 ~~~~~~~~~~-------~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg 148 (184)
T 3vtx_A 76 YYILGSANFM-------IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIG 148 (184)
T ss_dssp HHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHH-------cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHH
Confidence 7777777755 347777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhh
Q psy8160 243 NKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHI 297 (324)
Q Consensus 243 ~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 297 (324)
.+|...|+ +++ |+.+|++|++++|+++..
T Consensus 149 ~~~~~~g~------------------------~~~--A~~~~~~al~~~p~~a~~ 177 (184)
T 3vtx_A 149 LAYEGKGL------------------------RDE--AVKYFKKALEKEEKKAKY 177 (184)
T ss_dssp HHHHHTTC------------------------HHH--HHHHHHHHHHTTHHHHHH
T ss_pred HHHHHCCC------------------------HHH--HHHHHHHHHhCCccCHHH
Confidence 77666666 667 999999999999987653
No 40
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.93 E-value=1.4e-24 Score=176.89 Aligned_cols=219 Identities=14% Similarity=0.117 Sum_probs=182.2
Q ss_pred ccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHH
Q psy8160 13 IVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKL 89 (324)
Q Consensus 13 ~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~ 89 (324)
...+..+..+|...+..+ ++|+..|+++++.+|+ ...+++.+|.++...|++++|+..|++++ .+|.+..++..
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 96 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE---DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYG 96 (243)
T ss_dssp ----------------------CCTTHHHHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHH
Confidence 344555556666555555 9999999999999986 45689999999999999999999999999 99999999999
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWM 169 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~ 169 (324)
+|.++...|++++|+..+++++...|... .++..+|.++...|++++|+..+++++... |.+ ..++..+|.+
T Consensus 97 la~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~l~~~ 168 (243)
T 2q7f_A 97 AGNVYVVKEMYKEAKDMFEKALRAGMENG----DLFYMLGTVLVKLEQPKLALPYLQRAVELN--END--TEARFQFGMC 168 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCSH----HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhccHHHHHHHHHHHHHhC--Ccc--HHHHHHHHHH
Confidence 99999999999999999999999888765 789999999999999999999999999998 877 4599999999
Q ss_pred HHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcC
Q psy8160 170 YHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNN 249 (324)
Q Consensus 170 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 249 (324)
+.. .+++++|+..++++++..|.++.++..+|.++...|++++|+..|+++++.+|+++.++..++.+....+
T Consensus 169 ~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 169 LAN-------EGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHH-------HTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred HHH-------cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence 977 4589999999999999999999999999999999999999999999999999999999999988766554
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.93 E-value=3.5e-24 Score=175.78 Aligned_cols=210 Identities=13% Similarity=0.055 Sum_probs=188.9
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIA 129 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la 129 (324)
..+++.+|.++...|++++|+.+|++++ .+|.+..++..+|.++...|++++|++.+++++...|... .++..+|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA----RVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH----HHHHHHH
Confidence 6789999999999999999999999999 9999999999999999999999999999999999887764 7899999
Q ss_pred HHHHHhhcHHHHHHHHHHHHh--cCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHH
Q psy8160 130 HLHEVQRKYKTAKDSYEQLLK--EDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLL 207 (324)
Q Consensus 130 ~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 207 (324)
.++...|++++|+..|++++. .. |.. ..++..+|.++.. .+++++|+.+++++++..|.++.++..+
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~--~~~--~~~~~~la~~~~~-------~g~~~~A~~~~~~~~~~~~~~~~~~~~l 181 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLY--PER--SRVFENLGLVSLQ-------MKKPAQAKEYFEKSLRLNRNQPSVALEM 181 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTC--TTH--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccC--ccc--HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 999999999999999999998 44 555 5589999999977 4599999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHh
Q psy8160 208 GRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSY 287 (324)
Q Consensus 208 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~a 287 (324)
|.++...|++++|+..+++++...|.++..+..++.++...|+ +++ |...++++
T Consensus 182 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~------------------------~~~--A~~~~~~~ 235 (252)
T 2ho1_A 182 ADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFED------------------------RDT--AASYGLQL 235 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTC------------------------HHH--HHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccC------------------------HHH--HHHHHHHH
Confidence 9999999999999999999999999999888888888777777 556 88888889
Q ss_pred hhcCCChhhhhhch
Q psy8160 288 STSIASCKHINNNK 301 (324)
Q Consensus 288 l~~~p~~~~~~~~l 301 (324)
++.+|+++.....+
T Consensus 236 ~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 236 KRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHCTTSHHHHHHH
T ss_pred HHHCCCCHHHHHHH
Confidence 99999888765543
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.93 E-value=8.2e-24 Score=170.07 Aligned_cols=215 Identities=12% Similarity=0.084 Sum_probs=187.3
Q ss_pred ccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHH
Q psy8160 48 LRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRF 126 (324)
Q Consensus 48 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 126 (324)
+....+++.+|.++...|++++|+..|++++ .+|.+..++..+|.++...|++++|++.+++++...|... .++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~ 80 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA----EINN 80 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh----HHHH
Confidence 3456789999999999999999999999999 9999999999999999999999999999999999887765 7899
Q ss_pred HHHHHHHHh-hcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHH
Q psy8160 127 HIAHLHEVQ-RKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLY 205 (324)
Q Consensus 127 ~la~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 205 (324)
.+|.++... |++++|+..+++++.....|.. ..++..+|.++.. .+++++|+.+++++++..|.++.++.
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~ 151 (225)
T 2vq2_A 81 NYGWFLCGRLNRPAESMAYFDKALADPTYPTP--YIANLNKGICSAK-------QGQFGLAEAYLKRSLAAQPQFPPAFK 151 (225)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCH--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHcCcCCcch--HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCCchHHH
Confidence 999999999 9999999999999982111444 5589999999976 45999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHccCC-CCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHH
Q psy8160 206 LLGRCFAAVGKVHDAFLAYRNSVEKSE-GNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCY 284 (324)
Q Consensus 206 ~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~ 284 (324)
.+|.++...|++++|+..+++++..+| .++..+..++.++...|+ .++ |..++
T Consensus 152 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~--a~~~~ 205 (225)
T 2vq2_A 152 ELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGN------------------------AQA--AYEYE 205 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC------------------------HHH--HHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCc------------------------HHH--HHHHH
Confidence 999999999999999999999999999 888888777777777776 455 77777
Q ss_pred HHhhhcCCChhhhhhch
Q psy8160 285 NSYSTSIASCKHINNNK 301 (324)
Q Consensus 285 ~~al~~~p~~~~~~~~l 301 (324)
+.+.+.+|+++.+...+
T Consensus 206 ~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 206 AQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHCTTCHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHh
Confidence 77788888888765543
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.93 E-value=3.4e-24 Score=177.86 Aligned_cols=246 Identities=11% Similarity=0.013 Sum_probs=190.9
Q ss_pred HHHHHHHHHHhccCCCc-ccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSY-LRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLT 108 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 108 (324)
++|++.|.++++..|.. +....+++.+|.++...|++++|+.+|++++ .+|.+..++..+|.++...|++++|+.+|+
T Consensus 22 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 101 (275)
T 1xnf_A 22 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFD 101 (275)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 89999999999985432 3467789999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHH
Q psy8160 109 LCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIH 188 (324)
Q Consensus 109 ~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~ 188 (324)
+++...|... .++..+|.++...|++++|+..|++++..+ |++.. .....+.+. . .+++++|+.
T Consensus 102 ~al~~~~~~~----~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~--~~~~~~~~~-~-------~~~~~~A~~ 165 (275)
T 1xnf_A 102 SVLELDPTYN----YAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPF--RSLWLYLAE-Q-------KLDEKQAKE 165 (275)
T ss_dssp HHHHHCTTCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH--HHHHHHHHH-H-------HHCHHHHHH
T ss_pred HHHhcCcccc----HHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChH--HHHHHHHHH-H-------hcCHHHHHH
Confidence 9999888776 789999999999999999999999999988 77643 333333322 2 348999999
Q ss_pred HHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHH
Q psy8160 189 CLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDF 268 (324)
Q Consensus 189 ~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~ 268 (324)
.+++++...|.+...+. ++.++...++.++|+..+++++...|.... .. ..+|..+|.+
T Consensus 166 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~----~~~~~~la~~ 224 (275)
T 1xnf_A 166 VLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAE----------------HL----SETNFYLGKY 224 (275)
T ss_dssp HHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHH----------------HH----HHHHHHHHHH
T ss_pred HHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccc----------------cc----cHHHHHHHHH
Confidence 99999998888766654 677788888899999999999887664210 00 0345556666
Q ss_pred HHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHH
Q psy8160 269 LVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKY 319 (324)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~ 319 (324)
|...|++++ |+..|+++++.+|++..... ......+++.+|++.+
T Consensus 225 ~~~~g~~~~--A~~~~~~al~~~p~~~~~~~----~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 225 YLSLGDLDS--ATALFKLAVANNVHNFVEHR----YALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHTTCHHH--HHHHHHHHHTTCCTTCHHHH----HHHHHHHHHHHC----
T ss_pred HHHcCCHHH--HHHHHHHHHhCCchhHHHHH----HHHHHHHHHHhhHHHH
Confidence 666666788 89999999999987754331 1123467788887765
No 44
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.93 E-value=2e-24 Score=189.13 Aligned_cols=259 Identities=12% Similarity=0.070 Sum_probs=215.7
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCc----hhhHHHHHHHHhcccHHHHHHHHHHHHHhcCC--CcccHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPC----TFTKLEGLMFKVNNEYDSALKHLTLCLIDASP--CTFTKL 122 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~ 122 (324)
...+++.+|.++...|++++|+.+|++++ .+|.+. .++..+|.++...|++++|+.++++++...+. ......
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 34578899999999999999999999999 888874 56777999999999999999999999765322 223446
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCc----hhhHHHHHHHHHHHhhhhhcccchh----------------
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVH----LKADICRQLGWMYHCIDTLGEKSHR---------------- 182 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~---------------- 182 (324)
.++..+|.++...|++++|+..+++++... |.. ..+.++..+|.++.. .++
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~l~~~~~~-------~g~~~~~~~~~~~~~~~~~ 158 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDIS--RELNDKVGEARALYNLGNVYHA-------KGKSFGCPGPQDVGEFPEE 158 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHTCHHHHHHHHHHHHHHHHH-------HHHTCC-------CCCCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HhcccccchHHHHHHHHHHHHH-------cCCcccccccchhhhhhhh
Confidence 789999999999999999999999999875 321 125689999999977 447
Q ss_pred ----HHHHHHHHHHHhhh------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH------HHHHhHHHHh
Q psy8160 183 ----ETLAIHCLQKSIEA------DPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNAD------TWCSIGNKDF 246 (324)
Q Consensus 183 ----~~~A~~~~~~al~~------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~ 246 (324)
+++|+.++++++.. .|....++..+|.++...|++++|+..+++++.+.|..+. ++..+|.++.
T Consensus 159 a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 238 (406)
T 3sf4_A 159 VRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI 238 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 99999999999876 3444578999999999999999999999999988766544 8999999999
Q ss_pred hcCCCHHHHHHHH-----------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCCh------hhhhhchhh
Q psy8160 247 SNNSNREDYHQAL-----------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASC------KHINNNKDF 303 (324)
Q Consensus 247 ~~~~~~~~A~~~~-----------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~ 303 (324)
..|+ +++|+..| .++..+|.+|...|++++ |+.+|++++++.|.. +.+...++.
T Consensus 239 ~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~--A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 315 (406)
T 3sf4_A 239 FLGE-FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEK--AIDYHLKHLAIAQELNDRIGEGRACWSLGN 315 (406)
T ss_dssp HTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HcCC-hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 9999 99999998 578899999999999999 999999999986654 334445554
Q ss_pred hccCChhhHHHHHHHHhh
Q psy8160 304 SNNSNREDYHQALNKYRD 321 (324)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~ 321 (324)
+. ...|++++|+..|+.
T Consensus 316 ~~-~~~g~~~~A~~~~~~ 332 (406)
T 3sf4_A 316 AY-TALGNHDQAMHFAEK 332 (406)
T ss_dssp HH-HHHTCHHHHHHHHHH
T ss_pred HH-HHcCCHHHHHHHHHH
Confidence 43 456888888887764
No 45
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.93 E-value=2.4e-24 Score=174.38 Aligned_cols=202 Identities=15% Similarity=0.124 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcC-CCcccHHHHHHHHHH
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDAS-PCTFTKLEVRFHIAH 130 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~~~~~la~ 130 (324)
+.++.+|.++...|++++|+..|++++ ...| .+. .+++.+|.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al---------------------------------~~~~~~~~----~~~~~~~~ 50 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYL---------------------------------KLTNNQDS----VTAYNCGV 50 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH---------------------------------HHTTTCCH----HHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHH---------------------------------hccCCCCc----HHHHHHHH
Confidence 456666666666666666666666555 4433 222 56677888
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH-------HH
Q psy8160 131 LHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG-------QS 203 (324)
Q Consensus 131 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-------~~ 203 (324)
++...|++++|+..|++++..+ |.+ ..++..+|.++.. .+++++|+..++++++.+|.++ .+
T Consensus 51 ~~~~~~~~~~A~~~~~~al~~~--p~~--~~~~~~l~~~~~~-------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 119 (228)
T 4i17_A 51 CADNIKKYKEAADYFDIAIKKN--YNL--ANAYIGKSAAYRD-------MKNNQEYIATLTEGIKAVPGNATIEKLYAIY 119 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTT--CSH--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHhhcHHHHHHHHHHHHHhC--cch--HHHHHHHHHHHHH-------cccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 8888888888888888888888 776 4488888888866 4588888888888888888888 66
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCC--CHHHHHHhHHHHhhcCCCH--HHHHHHH--HHHHhhHHHHHHcCCCCc
Q psy8160 204 LYLLGRCFAAVGKVHDAFLAYRNSVEKSEG--NADTWCSIGNKDFSNNSNR--EDYHQAL--NKYRDLGDFLVINNIPTS 277 (324)
Q Consensus 204 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~--~~A~~~~--~~~~~lg~~~~~~~~~~~ 277 (324)
|+.+|.++...|++++|+..|+++++++|+ ++.+|..+|.+|...|+ . ++|.... ......+......+.+++
T Consensus 120 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 198 (228)
T 4i17_A 120 YLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGA-DVLRKATPLASSNKEKYASEKAKADAAFKK 198 (228)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH-HHHHHHGGGTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHH-HHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 99999999999998888 5 3332221 112223344555667899
Q ss_pred chHHHHHHHhhhcCCChhhhhhchhhh
Q psy8160 278 NNNRQCYNSYSTSIASCKHINNNKDFS 304 (324)
Q Consensus 278 ~~A~~~~~~al~~~p~~~~~~~~l~~~ 304 (324)
|+.+|+++++++|+++.+...+..+
T Consensus 199 --A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 199 --AVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp --HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred --HHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 9999999999999999988777654
No 46
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.92 E-value=1.2e-24 Score=191.23 Aligned_cols=261 Identities=13% Similarity=0.071 Sum_probs=215.5
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCc----hhhHHHHHHHHhcccHHHHHHHHHHHHHhcC--CCcccHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPC----TFTKLEGLMFKVNNEYDSALKHLTLCLIDAS--PCTFTKL 122 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~ 122 (324)
....++.+|..+...|++++|+.+|++++ .+|.+. .++..+|.++...|++++|+..+++++.... .......
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 45567899999999999999999999999 998876 4677899999999999999999999987621 2223445
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC--CCchhhHHHHHHHHHHHhhhhhcccchh-----------------H
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDL--PVHLKADICRQLGWMYHCIDTLGEKSHR-----------------E 183 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----------------~ 183 (324)
.++..+|.++...|++++|+..|++++..... .....+.++..+|.++.. .++ +
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~~~~~~~~~~~~a~~~~ 199 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA-------KGKHLGQRNPGKFGDDVKEAL 199 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-------HHHHHHHHSTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH-------cCcccccccchhhhhhhhHHH
Confidence 78999999999999999999999999877310 111226689999999977 447 9
Q ss_pred HHHHHHHHHHhhhC------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH------HHHHhHHHHhhcCCC
Q psy8160 184 TLAIHCLQKSIEAD------PKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNAD------TWCSIGNKDFSNNSN 251 (324)
Q Consensus 184 ~~A~~~~~~al~~~------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~~~~~ 251 (324)
++|+.++++++++. +....++..+|.++...|++++|+.++++++.+.|.... ++..+|.++...|+
T Consensus 200 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~- 278 (411)
T 4a1s_A 200 TRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ- 278 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC-
Confidence 99999999998764 334468999999999999999999999999998775543 88999999999999
Q ss_pred HHHHHHHH-----------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChh------hhhhchhhhccCC
Q psy8160 252 REDYHQAL-----------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCK------HINNNKDFSNNSN 308 (324)
Q Consensus 252 ~~~A~~~~-----------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~ 308 (324)
+++|+..| .++..+|.+|...|++++ |+.+|++++++.|... .+...++.+. ..
T Consensus 279 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~--A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-~~ 355 (411)
T 4a1s_A 279 FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNT--AIEYHNRHLAIAQELGDRIGEARACWSLGNAH-SA 355 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH-HH
Confidence 99999998 578899999999999999 9999999999866543 2444454443 45
Q ss_pred hhhHHHHHHHHhh
Q psy8160 309 REDYHQALNKYRD 321 (324)
Q Consensus 309 ~~~~~~a~~~~~~ 321 (324)
.|++.+|+..|+.
T Consensus 356 ~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 356 IGGHERALKYAEQ 368 (411)
T ss_dssp TTCHHHHHHHHHH
T ss_pred hccHHHHHHHHHH
Confidence 6888888887765
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.92 E-value=6.6e-24 Score=176.15 Aligned_cols=222 Identities=15% Similarity=0.134 Sum_probs=181.8
Q ss_pred cccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHH
Q psy8160 14 VTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLE 90 (324)
Q Consensus 14 ~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~l 90 (324)
..+..+..+|......+ ++|++.|+++++++|+ ...+++.+|.++...|++++|+.+|++++ .+|.+..++..+
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 117 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD---MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 117 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHH
Confidence 34556666777666555 9999999999999986 45689999999999999999999999999 999999999999
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHH
Q psy8160 91 GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMY 170 (324)
Q Consensus 91 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~ 170 (324)
|.++...|++++|+..+++++...|... .....++ +....|++++|+..+++++... |+... .+ .++.++
T Consensus 118 a~~~~~~g~~~~A~~~~~~a~~~~~~~~----~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~--~~~~~--~~-~~~~~~ 187 (275)
T 1xnf_A 118 GIALYYGGRDKLAQDDLLAFYQDDPNDP----FRSLWLY-LAEQKLDEKQAKEVLKQHFEKS--DKEQW--GW-NIVEFY 187 (275)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHH-HHHHHHCHHHHHHHHHHHHHHS--CCCST--HH-HHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCh----HHHHHHH-HHHHhcCHHHHHHHHHHHHhcC--CcchH--HH-HHHHHH
Confidence 9999999999999999999999888765 3333334 3467799999999999999988 65532 33 355555
Q ss_pred HhhhhhcccchhHHHHHHHHHHHhhhCCcc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHh
Q psy8160 171 HCIDTLGEKSHRETLAIHCLQKSIEADPKS----GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDF 246 (324)
Q Consensus 171 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 246 (324)
.. .++.++|+..+++++...|.. +.+++.+|.++...|++++|+..|++++..+|++...+ +.++.
T Consensus 188 ~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~~~~ 257 (275)
T 1xnf_A 188 LG-------NISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH---RYALL 257 (275)
T ss_dssp TT-------SSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH---HHHHH
T ss_pred HH-------hcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHHH---HHHHH
Confidence 33 336789999999999887743 68999999999999999999999999999999875543 77888
Q ss_pred hcCCCHHHHHHHH
Q psy8160 247 SNNSNREDYHQAL 259 (324)
Q Consensus 247 ~~~~~~~~A~~~~ 259 (324)
..|+ +++|++.|
T Consensus 258 ~l~~-~~~a~~~~ 269 (275)
T 1xnf_A 258 ELSL-LGQDQDDL 269 (275)
T ss_dssp HHHH-HHHC----
T ss_pred HHHH-HHhhHHHH
Confidence 8888 88887764
No 48
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.92 E-value=4.2e-24 Score=191.47 Aligned_cols=212 Identities=15% Similarity=0.142 Sum_probs=183.6
Q ss_pred hccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccH-HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHH
Q psy8160 64 NNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEY-DSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTA 141 (324)
Q Consensus 64 ~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~-~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 141 (324)
.+.+++++..+..+. .+|.+..++..+|.++...|++ ++|++.|++++...|... .+++.+|.++...|++++|
T Consensus 81 ~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~g~~~~A 156 (474)
T 4abn_A 81 QEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELV----EAWNQLGEVYWKKGDVTSA 156 (474)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHH
Confidence 456888999999888 8899999999999999999999 999999999999998876 8999999999999999999
Q ss_pred HHHHHHHHhcCCCCCchhhHHHHHHHHHHHhh--hhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHc-----
Q psy8160 142 KDSYEQLLKEDDLPVHLKADICRQLGWMYHCI--DTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAV----- 214 (324)
Q Consensus 142 ~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~----- 214 (324)
+.+|++++..+ |+ ..++..+|.++... .......+++++|+..|+++++.+|.++.+|+.+|.++...
T Consensus 157 ~~~~~~al~~~--p~---~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~ 231 (474)
T 4abn_A 157 HTCFSGALTHC--KN---KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTG 231 (474)
T ss_dssp HHHHHHHHTTC--CC---HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhC--CC---HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhc
Confidence 99999999998 77 35999999999762 00000116999999999999999999999999999999999
Q ss_pred ---CCHHHHHHHHHHHHccCC---CCHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCc
Q psy8160 215 ---GKVHDAFLAYRNSVEKSE---GNADTWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTS 277 (324)
Q Consensus 215 ---~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~ 277 (324)
|++++|+..|++++.++| +++.+|+++|.+|...|+ +++|+..| .++..+|.++...|++++
T Consensus 232 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 232 QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEES-YGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp CCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999 77777766 556666777666666666
Q ss_pred chHHHHHHHh
Q psy8160 278 NNNRQCYNSY 287 (324)
Q Consensus 278 ~~A~~~~~~a 287 (324)
|+..+.+.
T Consensus 311 --Ai~~~~~~ 318 (474)
T 4abn_A 311 --LLESKGKT 318 (474)
T ss_dssp --HHHHTTTC
T ss_pred --HHHHhccc
Confidence 66655544
No 49
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.92 E-value=1.4e-23 Score=169.87 Aligned_cols=186 Identities=11% Similarity=0.059 Sum_probs=154.4
Q ss_pred ccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHH
Q psy8160 13 IVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKL 89 (324)
Q Consensus 13 ~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~ 89 (324)
..+|+.+..+|...+..+ ++|++.|+++++++|. ....+++.+|.++...|++++|+.+|++++ .+|.+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~----- 76 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN--QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLA----- 76 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH-----
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC--CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchH-----
Confidence 345677777887766666 9999999999999972 234578889999999999999999999877 666543
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh-----hHHHH
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK-----ADICR 164 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-----~~~~~ 164 (324)
.++..+|.++...|++++|+..|++++..+ |++.. +.++.
T Consensus 77 ---------------------------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~ 121 (228)
T 4i17_A 77 ---------------------------------NAYIGKSAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYL 121 (228)
T ss_dssp ---------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHH
Confidence 556777778888888888888888888877 66542 14688
Q ss_pred HHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc--cHHHHHHHHHHHHHcCCH-------------------------
Q psy8160 165 QLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK--SGQSLYLLGRCFAAVGKV------------------------- 217 (324)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~lg~~~~~~~~~------------------------- 217 (324)
.+|.++.. .+++++|+..|+++++.+|+ ++.+++.+|.++...|+.
T Consensus 122 ~~g~~~~~-------~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 194 (228)
T 4i17_A 122 KEGQKFQQ-------AGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADA 194 (228)
T ss_dssp HHHHHHHH-------TTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHH-------hccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 88888866 55999999999999999999 999999999999999988
Q ss_pred --HHHHHHHHHHHccCCCCHHHHHHhHHHHhh
Q psy8160 218 --HDAFLAYRNSVEKSEGNADTWCSIGNKDFS 247 (324)
Q Consensus 218 --~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 247 (324)
++|+.+|+++++++|+++.+...++.+...
T Consensus 195 ~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 195 AFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999988877654
No 50
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.92 E-value=7.1e-24 Score=180.43 Aligned_cols=260 Identities=12% Similarity=0.059 Sum_probs=212.3
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCc----hhhHHHHHHHHhcccHHHHHHHHHHHHHhcCC--CcccHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPC----TFTKLEGLMFKVNNEYDSALKHLTLCLIDASP--CTFTKLE 123 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~ 123 (324)
...++..|.++...|++++|+.+|++++ .+|.+. .++..+|.++...|++++|+..+++++...+. .......
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 3467888999999999999999999999 888874 56677999999999999999999999765222 2223457
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCC--chhhHHHHHHHHHHHhhhhhcccchh-------------------
Q psy8160 124 VRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPV--HLKADICRQLGWMYHCIDTLGEKSHR------------------- 182 (324)
Q Consensus 124 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~------------------- 182 (324)
++..+|.++...|++++|+..+++++....... ...+.++..+|.++.. .++
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~a~~ 157 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA-------KGKSFGCPGPQDTGEFPEDVRN 157 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------HHHTSSSSSCC----CCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-------cCcccccchhhhhhhhhhhHHH
Confidence 899999999999999999999999987651111 1125688899999977 346
Q ss_pred -HHHHHHHHHHHhhh------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------HHHHHHhHHHHhhcC
Q psy8160 183 -ETLAIHCLQKSIEA------DPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN------ADTWCSIGNKDFSNN 249 (324)
Q Consensus 183 -~~~A~~~~~~al~~------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~ 249 (324)
+++|+.++++++.. .|....++..+|.++...|++++|+..+++++.+.|.. ..++..+|.++...|
T Consensus 158 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g 237 (338)
T 3ro2_A 158 ALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 237 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC
Confidence 99999999999876 33345789999999999999999999999999876544 338899999999999
Q ss_pred CCHHHHHHHH-----------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChh------hhhhchhhhcc
Q psy8160 250 SNREDYHQAL-----------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCK------HINNNKDFSNN 306 (324)
Q Consensus 250 ~~~~~A~~~~-----------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~ 306 (324)
+ +++|+..+ .++..+|.++...|++++ |+.+|+++++..|... .+...++.+.
T Consensus 238 ~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~--A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~- 313 (338)
T 3ro2_A 238 E-FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEK--AIDYHLKHLAIAQELKDRIGEGRACWSLGNAY- 313 (338)
T ss_dssp C-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-
T ss_pred C-HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-
Confidence 9 99999988 577899999999999999 9999999999876543 2444444432
Q ss_pred CChhhHHHHHHHHhh
Q psy8160 307 SNREDYHQALNKYRD 321 (324)
Q Consensus 307 ~~~~~~~~a~~~~~~ 321 (324)
...|++++|+..|+.
T Consensus 314 ~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 314 TALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHTCHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHH
Confidence 456888888887764
No 51
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.91 E-value=4.4e-22 Score=179.36 Aligned_cols=246 Identities=13% Similarity=0.105 Sum_probs=159.3
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHH----hccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHh----cccHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKV----NNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKV----NNEYD 101 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~----~~~~~ 101 (324)
++|+++|+++++.. ...+++.+|.+|.. .+++++|+++|++++ . .+..+...+|.++.. .++++
T Consensus 168 ~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~ 240 (490)
T 2xm6_A 168 VMAREWYSKAAEQG-----NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYT 240 (490)
T ss_dssp HHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHCC-----CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHH
Confidence 55555555555432 23455555555555 555666666665555 2 233445555555554 55666
Q ss_pred HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH----hhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhc
Q psy8160 102 SALKHLTLCLIDASPCTFTKLEVRFHIAHLHEV----QRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLG 177 (324)
Q Consensus 102 ~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 177 (324)
+|+.+|++++.... ..+++.+|.++.. .+++++|+..|+++.+.. + +.+++.+|.++.... .|
T Consensus 241 ~A~~~~~~a~~~~~------~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~--~----~~a~~~Lg~~y~~~~-~g 307 (490)
T 2xm6_A 241 QSRVLFSQSAEQGN------SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG--N----SDGQYYLAHLYDKGA-EG 307 (490)
T ss_dssp HHHHHHHHHHTTTC------HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT--C----HHHHHHHHHHHHHCB-TT
T ss_pred HHHHHHHHHHHCCC------HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC--C----HHHHHHHHHHHHcCC-CC
Confidence 66666666654321 2456667777666 667777777777766543 2 336677777775410 00
Q ss_pred ccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHccCCCCHHHHHHhHHHHhh----cCC
Q psy8160 178 EKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVG---KVHDAFLAYRNSVEKSEGNADTWCSIGNKDFS----NNS 250 (324)
Q Consensus 178 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~ 250 (324)
..+++++|+.+|+++++.. ++.+++.+|.++...| ++++|+.+|+++++. .++.+++.+|.+|.. .++
T Consensus 308 -~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~ 382 (490)
T 2xm6_A 308 -VAKNREQAISWYTKSAEQG--DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKD 382 (490)
T ss_dssp -BCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCC
T ss_pred -CcCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCC
Confidence 0237777888888877653 4677777888877755 677888888888765 567888888888887 777
Q ss_pred CHHHHHHHH---------HHHHhhHHHHHH----cCCCCcchHHHHHHHhhhcCC---Chhhhhhchhhh
Q psy8160 251 NREDYHQAL---------NKYRDLGDFLVI----NNIPTSNNNRQCYNSYSTSIA---SCKHINNNKDFS 304 (324)
Q Consensus 251 ~~~~A~~~~---------~~~~~lg~~~~~----~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l~~~ 304 (324)
+++|+.+| .++++||.+|.. .+++++ |+..|++|++.+| +++.+..+++.+
T Consensus 383 -~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~--A~~~~~~A~~~~~~~~~~~~a~~~l~~~ 449 (490)
T 2xm6_A 383 -EQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQ--AWAWFDTASTNDMNLFGTENRNITEKKL 449 (490)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHH--HHHHHHHHHHHHCCHHHHHHHHHHHTTS
T ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHH--HHHHHHHHHHCCCCCcCCHHHHHHHHhc
Confidence 88888888 677888888887 677888 8888888888874 477776666654
No 52
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.91 E-value=3.6e-23 Score=180.54 Aligned_cols=231 Identities=11% Similarity=0.052 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-c---CCC---CchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCc---ccHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-I---DAS---PCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCT---FTKL 122 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~---~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~ 122 (324)
.++.+|.++...|++++|+.+|++++ . .++ ...++..+|.++...|++++|+.++++++...+... ....
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 45569999999999999999999998 5 232 456777899999999999999999999988754442 2445
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCC--chhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhh-----
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPV--HLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIE----- 195 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~----- 195 (324)
.++..+|.++...|++++|+.+|++++......+ ...+.++.++|.++.. .|++++|+.+++++++
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~-------~g~~~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS-------QSQYEDAIPYFKRAIAVFEES 257 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHHhh
Confidence 7899999999999999999999999997751111 1225689999999977 5599999999999998
Q ss_pred hC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC-----CCCHHHHHHhHHHHhhcCCCH---HHHHHHH-------
Q psy8160 196 AD-PKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKS-----EGNADTWCSIGNKDFSNNSNR---EDYHQAL------- 259 (324)
Q Consensus 196 ~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~~~~~---~~A~~~~------- 259 (324)
.+ |..+.++..+|.++...|++++|+.++++++.+. |.....+..+|.++...|+ + .+|+..+
T Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~al~~~~~~~~~~ 336 (383)
T 3ulq_A 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPD-EEAIQGFFDFLESKMLYA 336 (383)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCC-HHHHHHHHHHHHHTTCHH
T ss_pred ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHCcCHH
Confidence 56 7888999999999999999999999999999884 3334446779999999987 5 3444444
Q ss_pred ---HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCC
Q psy8160 260 ---NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIAS 293 (324)
Q Consensus 260 ---~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (324)
.++..+|.+|...|++++ |+.+|++++++...
T Consensus 337 ~~~~~~~~la~~y~~~g~~~~--A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 337 DLEDFAIDVAKYYHERKNFQK--ASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHHH
Confidence 688899999999999999 99999999987654
No 53
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.91 E-value=6.8e-22 Score=178.11 Aligned_cols=260 Identities=13% Similarity=0.105 Sum_probs=165.9
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHH----hccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHh----cccHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKV----NNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKV----NNEYD 101 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~----~~~~~ 101 (324)
++|+++|+++.+.. ...+++.+|.+|.. .+++++|+++|++++ . .+..+...+|.+|.. .++++
T Consensus 132 ~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~ 204 (490)
T 2xm6_A 132 AESVKWFRLAAEQG-----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDA 204 (490)
T ss_dssp HHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHH
Confidence 55555555554432 23345555555554 455555555555555 3 234455555555555 55555
Q ss_pred HHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH----hhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhc
Q psy8160 102 SALKHLTLCLIDASPCTFTKLEVRFHIAHLHEV----QRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLG 177 (324)
Q Consensus 102 ~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 177 (324)
+|+++|++++.... ..+++.+|.++.. .+++++|+..|++++... + +.+++.+|.++.... |
T Consensus 205 ~A~~~~~~a~~~~~------~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~----~~a~~~lg~~y~~g~--~ 270 (490)
T 2xm6_A 205 ISAQWYRKSATSGD------ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG--N----SIAQFRLGYILEQGL--A 270 (490)
T ss_dssp HHHHHHHHHHHTTC------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT--C----HHHHHHHHHHHHHTT--T
T ss_pred HHHHHHHHHHHCCC------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--C----HHHHHHHHHHHHCCC--C
Confidence 55555555554321 2455566666654 556666666666665543 2 336666666664310 0
Q ss_pred ccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcC---
Q psy8160 178 EKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAV-----GKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNN--- 249 (324)
Q Consensus 178 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~-----~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~--- 249 (324)
..+++++|+.+|+++.+. .++.+++.+|.++... +++++|+.+|+++++. .++.+++.+|.+|...|
T Consensus 271 -~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~ 345 (490)
T 2xm6_A 271 -GAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEE 345 (490)
T ss_dssp -SSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHH
T ss_pred -CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcc
Confidence 133778888888887655 4567788888888877 7888888888888765 46778888888887755
Q ss_pred CCHHHHHHHH---------HHHHhhHHHHHH----cCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccC---ChhhHH
Q psy8160 250 SNREDYHQAL---------NKYRDLGDFLVI----NNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNS---NREDYH 313 (324)
Q Consensus 250 ~~~~~A~~~~---------~~~~~lg~~~~~----~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~---~~~~~~ 313 (324)
+ +++|+.+| .++++||.+|.. .+++++ |+.+|+++++.. ++.+..+++.+... ..+++.
T Consensus 346 ~-~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~--A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~ 420 (490)
T 2xm6_A 346 E-HKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQ--AAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYV 420 (490)
T ss_dssp H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHH--HHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred c-HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHH--HHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHH
Confidence 6 77888887 778888888888 778888 888888888753 56677777765432 257788
Q ss_pred HHHHHHhh
Q psy8160 314 QALNKYRD 321 (324)
Q Consensus 314 ~a~~~~~~ 321 (324)
+|+..|+.
T Consensus 421 ~A~~~~~~ 428 (490)
T 2xm6_A 421 QAWAWFDT 428 (490)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887764
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.91 E-value=2.3e-22 Score=164.83 Aligned_cols=207 Identities=14% Similarity=0.046 Sum_probs=184.1
Q ss_pred ccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHH
Q psy8160 17 VRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLM 93 (324)
Q Consensus 17 ~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~ 93 (324)
..+..+|......+ ++|++.|+++++.+|+ ...+++.+|.++...|++++|++.|++++ .+|.+..++..+|.+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS---SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHH
Confidence 33444555444444 9999999999999986 35689999999999999999999999999 999999999999999
Q ss_pred HHhcccHHHHHHHHHHHHH--hcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHH
Q psy8160 94 FKVNNEYDSALKHLTLCLI--DASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYH 171 (324)
Q Consensus 94 ~~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~ 171 (324)
+...|++++|++.+++++. ..| ....++..+|.++...|++++|+..|++++... |.+ ..++..+|.++.
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~la~~~~ 186 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYP----ERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQ--PSVALEMADLLY 186 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCT----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCC--HHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCc----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--ccc--HHHHHHHHHHHH
Confidence 9999999999999999997 333 335789999999999999999999999999998 877 458999999997
Q ss_pred hhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHh
Q psy8160 172 CIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSI 241 (324)
Q Consensus 172 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 241 (324)
. .+++++|+.+++++++..|.++..+..++.++...|++++|...+++++...|+++.++..+
T Consensus 187 ~-------~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 187 K-------EREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp H-------TTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred H-------cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 7 55999999999999999999999999999999999999999999999999999999887654
No 55
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.91 E-value=4.5e-22 Score=168.49 Aligned_cols=211 Identities=6% Similarity=0.039 Sum_probs=184.2
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHH-------hccH-------HHHHHHHHHHh-c-CCCCchhhHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKV-------NNEY-------DSALKHLTLCL-I-DASPCTFTKLEGLMF 94 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~-------~~~~-------~~A~~~~~~al-~-~~~~~~~~~~la~~~ 94 (324)
++|+..|++++..+|+ .+++|+.+|..+.. .|++ ++|+..|++++ . +|++..++..+|.++
T Consensus 33 ~~a~~~~~~al~~~p~---~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH---HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 7899999999999986 46689999998874 4775 99999999999 4 899999999999999
Q ss_pred HhcccHHHHHHHHHHHHHhcCCCcccHHH-HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhh
Q psy8160 95 KVNNEYDSALKHLTLCLIDASPCTFTKLE-VRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCI 173 (324)
Q Consensus 95 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~ 173 (324)
...|++++|...|++++...|... . ++..+|.++...|++++|+..|++++... |.. ..++...+.+...
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~--~~~~~~~a~~~~~- 180 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDIDP----TLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTR--HHVYVTAALMEYY- 180 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCT----HHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCC--THHHHHHHHHHHH-
T ss_pred HhcCCHHHHHHHHHHHHhccccCc----cHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCC--HHHHHHHHHHHHH-
Confidence 999999999999999999877654 4 89999999999999999999999999988 766 3366665555422
Q ss_pred hhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc---CC-CCHHHHHHhHHHHhhcC
Q psy8160 174 DTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK---SE-GNADTWCSIGNKDFSNN 249 (324)
Q Consensus 174 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p-~~~~~~~~lg~~~~~~~ 249 (324)
. .|++++|+..|+++++.+|.++.+|..+|..+...|++++|+..|++++.. .| +...+|..++..+...|
T Consensus 181 -~----~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g 255 (308)
T 2ond_A 181 -C----SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 255 (308)
T ss_dssp -T----SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHS
T ss_pred -H----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 1 248999999999999999999999999999999999999999999999995 55 37889999999999999
Q ss_pred CCHHHHHHHH
Q psy8160 250 SNREDYHQAL 259 (324)
Q Consensus 250 ~~~~~A~~~~ 259 (324)
+ +++|...+
T Consensus 256 ~-~~~a~~~~ 264 (308)
T 2ond_A 256 D-LASILKVE 264 (308)
T ss_dssp C-HHHHHHHH
T ss_pred C-HHHHHHHH
Confidence 9 88877665
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.91 E-value=6.9e-22 Score=158.74 Aligned_cols=212 Identities=13% Similarity=0.037 Sum_probs=187.2
Q ss_pred cccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHH
Q psy8160 14 VTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLE 90 (324)
Q Consensus 14 ~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~l 90 (324)
.++..+..+|......+ ++|++.|+++++.+|+ ...+++.+|.++...|++++|+.+|++++ .+|.+...+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK---NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc---chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 34455556666555555 9999999999999986 35689999999999999999999999999 999999999999
Q ss_pred HHHHHhc-ccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q psy8160 91 GLMFKVN-NEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWM 169 (324)
Q Consensus 91 a~~~~~~-~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~ 169 (324)
|.++... |++++|+..+++++. .| .......++..+|.++...|++++|+..|++++... |.+ ..++..+|.+
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~-~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~la~~ 156 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALA-DP-TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQF--PPAFKELART 156 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHT-ST-TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTC--HHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHc-Cc-CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC--chHHHHHHHH
Confidence 9999999 999999999999998 22 222345789999999999999999999999999998 877 4599999999
Q ss_pred HHhhhhhcccchhHHHHHHHHHHHhhhCC-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHh
Q psy8160 170 YHCIDTLGEKSHRETLAIHCLQKSIEADP-KSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSI 241 (324)
Q Consensus 170 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 241 (324)
+.. .+++++|+..++++++..| .++..+..++.++...|++++|..+++.++..+|+++.++..+
T Consensus 157 ~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 157 KML-------AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHH-------HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHH-------cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 977 4599999999999999999 9999999999999999999999999999999999999887655
No 57
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.91 E-value=3.1e-23 Score=193.23 Aligned_cols=172 Identities=12% Similarity=0.109 Sum_probs=159.7
Q ss_pred ccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHH
Q psy8160 48 LRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRF 126 (324)
Q Consensus 48 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 126 (324)
|..++++..||.++..+|++++|+++|++++ ++|++..++..+|.++..+|++++|+..|++++...|... ++++
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~----~a~~ 81 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA----DAYS 81 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHH
Confidence 5577899999999999999999999999999 9999999999999999999999999999999999988876 8999
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHH
Q psy8160 127 HIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYL 206 (324)
Q Consensus 127 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 206 (324)
++|.++..+|++++|++.|+++++++ |++ +.++.++|.++.. .|++++|+..|+++++++|+++.++.+
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~l~--P~~--~~a~~~Lg~~~~~-------~g~~~eAi~~~~~Al~l~P~~~~a~~~ 150 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQIN--PAF--ADAHSNLASIHKD-------SGNIPEAIASYRTALKLKPDFPDAYCN 150 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCSCCHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCC--HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCChHHHhh
Confidence 99999999999999999999999999 888 5599999999977 559999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCC
Q psy8160 207 LGRCFAAVGKVHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 207 lg~~~~~~~~~~~A~~~~~~al~~~p~~ 234 (324)
+|.++...|++++|++.+++++++.|+.
T Consensus 151 L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 151 LAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred hhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 9999999999999999999999876543
No 58
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.90 E-value=6.8e-23 Score=190.91 Aligned_cols=156 Identities=14% Similarity=0.192 Sum_probs=129.2
Q ss_pred CCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh
Q psy8160 80 DASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK 159 (324)
Q Consensus 80 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 159 (324)
.|++..++..+|.++..+|++++|++.|++++...|... .+++++|.++..+|++++|+..|+++++++ |++
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~----~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~-- 76 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA----AAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTF-- 76 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC--
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC--
Confidence 577777888888888888888888888888888887765 788888888888888888888888888888 877
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWC 239 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 239 (324)
+.++.++|.++.. .+++++|+..|+++++++|+++.+|+++|.++...|++++|+..|+++++++|+++.++.
T Consensus 77 ~~a~~nLg~~l~~-------~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~ 149 (723)
T 4gyw_A 77 ADAYSNMGNTLKE-------MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYC 149 (723)
T ss_dssp HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHh
Confidence 4588888888866 448888888888888888888888888888888888888888888888888888888887
Q ss_pred HhHHHHhhcCC
Q psy8160 240 SIGNKDFSNNS 250 (324)
Q Consensus 240 ~lg~~~~~~~~ 250 (324)
++|.++...|+
T Consensus 150 ~L~~~l~~~g~ 160 (723)
T 4gyw_A 150 NLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHHTTC
T ss_pred hhhhHHHhccc
Confidence 77777777777
No 59
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.90 E-value=1.8e-23 Score=176.46 Aligned_cols=239 Identities=15% Similarity=0.161 Sum_probs=188.6
Q ss_pred CCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-c--------CCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcC
Q psy8160 45 PSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-I--------DASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDAS 115 (324)
Q Consensus 45 p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 115 (324)
|+.|....+++.+|.++...|++++|+.+|++++ . +|....++..+|.++...|++++|+..+++++....
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4556677899999999999999999999999999 5 456667788899999999999999999999987631
Q ss_pred ----CCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC----CCCchhhHHHHHHHHHHHhhhhhcccchhHHHHH
Q psy8160 116 ----PCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDD----LPVHLKADICRQLGWMYHCIDTLGEKSHRETLAI 187 (324)
Q Consensus 116 ----~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~ 187 (324)
........++..+|.++...|++++|+.+|++++.... ........++..+|.++.. .+++++|+
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-------~~~~~~A~ 173 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQN-------QGKYEEVE 173 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT-------TTCHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-------cCCHHHHH
Confidence 11223457899999999999999999999999997620 0112236689999999976 55999999
Q ss_pred HHHHHHhhh--------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC---------CCCHHHHHHhHHHHh----
Q psy8160 188 HCLQKSIEA--------DPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKS---------EGNADTWCSIGNKDF---- 246 (324)
Q Consensus 188 ~~~~~al~~--------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~lg~~~~---- 246 (324)
.+++++++. .|....++..+|.++...|++++|+..+++++... +.....|...+.+..
T Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (311)
T 3nf1_A 174 YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGK 253 (311)
T ss_dssp HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCc
Confidence 999999988 77778899999999999999999999999999753 334444444444443
Q ss_pred --hcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCC
Q psy8160 247 --SNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIAS 293 (324)
Q Consensus 247 --~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (324)
..+. +.+|+..+ .++..+|.+|...|++++ |+.+|++++++.|.
T Consensus 254 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~--A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 254 QKDGTS-FGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEA--AETLEEAAMRSRKQ 310 (311)
T ss_dssp ----CC-SCCCC---------CHHHHHHHHHHHHHHHHHTCHHH--HHHHHHHHHHHHC-
T ss_pred hhhHHH-HHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHhhc
Confidence 3333 33333333 788999999999999999 99999999998875
No 60
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.90 E-value=5.3e-22 Score=166.56 Aligned_cols=214 Identities=13% Similarity=0.097 Sum_probs=178.3
Q ss_pred hhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-c--CCCCchhhHHHHHHHH
Q psy8160 21 KLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-I--DASPCTFTKLEGLMFK 95 (324)
Q Consensus 21 ~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~--~~~~~~~~~~la~~~~ 95 (324)
.+++..+..+ +.|+..++. .+ +....++..++..+...+++++|++.+++++ . +|++..++..+|.++.
T Consensus 39 ~l~r~yi~~g~~~~al~~~~~---~~---~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~ 112 (291)
T 3mkr_A 39 FLYRAYLAQRKYGVVLDEIKP---SS---APELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYF 112 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHSCT---TS---CHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHhcc---cC---ChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHH
Confidence 3444444444 777775544 12 3356688889999999999999999999988 5 5999999999999999
Q ss_pred hcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhh
Q psy8160 96 VNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDT 175 (324)
Q Consensus 96 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~ 175 (324)
..|++++|++.+++ |.+ .+++..+|.++..+|++++|+..|++++..+ |++.. .....+++....
T Consensus 113 ~~g~~~~Al~~l~~-----~~~----~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~--~~l~~a~~~l~~-- 177 (291)
T 3mkr_A 113 YDQNPDAALRTLHQ-----GDS----LECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATL--TQLATAWVSLAA-- 177 (291)
T ss_dssp HTTCHHHHHHHHTT-----CCS----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH--HHHHHHHHHHHH--
T ss_pred HCCCHHHHHHHHhC-----CCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHH--HHHHHHHHHHHh--
Confidence 99999999998886 433 3789999999999999999999999999998 87632 333333333221
Q ss_pred hcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHH
Q psy8160 176 LGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDY 255 (324)
Q Consensus 176 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A 255 (324)
+ .+++++|+..|+++++.+|.++.+|+.+|.++...|++++|+..|++++..+|+++++|.++|.++...|+ +.++
T Consensus 178 -~--~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~-~~ea 253 (291)
T 3mkr_A 178 -G--GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK-PPEV 253 (291)
T ss_dssp -C--TTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-CHHH
T ss_pred -C--chHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-CHHH
Confidence 1 45999999999999999999999999999999999999999999999999999999999999999999999 8775
Q ss_pred -HHHH
Q psy8160 256 -HQAL 259 (324)
Q Consensus 256 -~~~~ 259 (324)
..++
T Consensus 254 a~~~~ 258 (291)
T 3mkr_A 254 TNRYL 258 (291)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 4554
No 61
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.90 E-value=6.7e-22 Score=163.32 Aligned_cols=194 Identities=12% Similarity=0.076 Sum_probs=166.8
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCC---chhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASP---CTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVR 125 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 125 (324)
..+.++.+|..++..|++++|+..|++++ .+|.+ ..++..+|.++...|++++|+..|++++...|.+. ....++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP-RVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-THHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc-hhHHHH
Confidence 56789999999999999999999999999 99998 78889999999999999999999999999987664 334789
Q ss_pred HHHHHHHHH--------hhcHHHHHHHHHHHHhcCCCCCchh-hHHH--------------HHHHHHHHhhhhhcccchh
Q psy8160 126 FHIAHLHEV--------QRKYKTAKDSYEQLLKEDDLPVHLK-ADIC--------------RQLGWMYHCIDTLGEKSHR 182 (324)
Q Consensus 126 ~~la~~~~~--------~~~~~~A~~~~~~al~~~~~~~~~~-~~~~--------------~~l~~~~~~~~~~~~~~~~ 182 (324)
+.+|.++.. .|++++|+..|++++... |++.. ..+. +.+|.++.. .|+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~-------~g~ 163 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYER-------REL 163 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TTC
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------ccC
Confidence 999999999 999999999999999999 77644 2222 788888876 559
Q ss_pred HHHHHHHHHHHhhhCCc---cHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHccCCCCH---HHHHHhHHHHh
Q psy8160 183 ETLAIHCLQKSIEADPK---SGQSLYLLGRCFAAV----------GKVHDAFLAYRNSVEKSEGNA---DTWCSIGNKDF 246 (324)
Q Consensus 183 ~~~A~~~~~~al~~~~~---~~~~~~~lg~~~~~~----------~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~ 246 (324)
+++|+..|+++++..|+ .+.+++.+|.++... |++++|+..|+++++..|+++ .+...++.++.
T Consensus 164 ~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~ 243 (261)
T 3qky_A 164 YEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQ 243 (261)
T ss_dssp HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 99999999999999888 567999999999977 889999999999999999985 45556677776
Q ss_pred hcCCCHHH
Q psy8160 247 SNNSNRED 254 (324)
Q Consensus 247 ~~~~~~~~ 254 (324)
..++ +++
T Consensus 244 ~~~~-~~~ 250 (261)
T 3qky_A 244 RLTE-LEG 250 (261)
T ss_dssp HHHH-HHT
T ss_pred HHHH-hhh
Confidence 6666 544
No 62
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.89 E-value=3.6e-21 Score=159.90 Aligned_cols=219 Identities=13% Similarity=0.180 Sum_probs=188.7
Q ss_pred cccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHH----hccHHHHHHHHHHHh-cCCCCchh
Q psy8160 14 VTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKV----NNEYDSALKHLTLCL-IDASPCTF 86 (324)
Q Consensus 14 ~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al-~~~~~~~~ 86 (324)
.++.....+|......+ ++|+++|+++++ |+ ...+++.+|.++.. .+++++|+.+|++++ .+ +..+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a 76 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNG 76 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHH
Confidence 34555666776655555 999999999998 43 34689999999999 999999999999999 65 6788
Q ss_pred hHHHHHHHHh----cccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH----hhcHHHHHHHHHHHHhcCCCCCch
Q psy8160 87 TKLEGLMFKV----NNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEV----QRKYKTAKDSYEQLLKEDDLPVHL 158 (324)
Q Consensus 87 ~~~la~~~~~----~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~ 158 (324)
+..+|.++.. .+++++|+..|++++... . ..+++.+|.++.. .+++++|+.+|++++..+ +
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~----~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~--- 145 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--Y----AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--D--- 145 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C----HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--C---
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--C----ccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--c---
Confidence 8999999999 999999999999999763 2 3789999999999 999999999999999876 3
Q ss_pred hhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHH----cCCHHHHHHHHHHHHccCCCC
Q psy8160 159 KADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAA----VGKVHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 159 ~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~----~~~~~~A~~~~~~al~~~p~~ 234 (324)
..++..+|.++.... + ..+++++|+.+|+++++.. ++.+++.+|.++.. .+++++|+.+|+++++.+|
T Consensus 146 -~~a~~~lg~~~~~~~--~-~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-- 217 (273)
T 1ouv_A 146 -GDGCTILGSLYDAGR--G-TPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-- 217 (273)
T ss_dssp -HHHHHHHHHHHHHTS--S-SCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--
T ss_pred -HHHHHHHHHHHHcCC--C-CCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--
Confidence 448899999996511 0 1348999999999999874 57899999999999 9999999999999999876
Q ss_pred HHHHHHhHHHHhh----cCCCHHHHHHHH
Q psy8160 235 ADTWCSIGNKDFS----NNSNREDYHQAL 259 (324)
Q Consensus 235 ~~~~~~lg~~~~~----~~~~~~~A~~~~ 259 (324)
+.+++.+|.+|.. .++ +++|+.+|
T Consensus 218 ~~a~~~l~~~~~~g~~~~~~-~~~A~~~~ 245 (273)
T 1ouv_A 218 GGGCFNLGAMQYNGEGVTRN-EKQAIENF 245 (273)
T ss_dssp HHHHHHHHHHHHTTSSSSCC-STTHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccC-HHHHHHHH
Confidence 8999999999999 999 99999988
No 63
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.89 E-value=1.4e-21 Score=170.19 Aligned_cols=232 Identities=12% Similarity=0.029 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-cC------CCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCc---ccHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-ID------ASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCT---FTKL 122 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~---~~~~ 122 (324)
.++..|..+...|++++|+.+|++++ .. |....++..+|.++...|+++.|+.++++++...+... ...+
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 57889999999999999999999998 52 22345677799999999999999999999988755433 2456
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC--CCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhh-----
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDL--PVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIE----- 195 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~----- 195 (324)
.++..+|.++...|++++|+++|++++..... .....+.++.++|.++.. .+++++|+.+++++++
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~-------~~~~~~A~~~~~~al~~~~~~ 255 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR-------SGDDQMAVEHFQKAAKVSREK 255 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999999999986411 111236789999999977 4599999999999999
Q ss_pred hCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC-----CCHHHHHHhHHHHhhcCCC--HHHHHHHH---------
Q psy8160 196 ADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSE-----GNADTWCSIGNKDFSNNSN--REDYHQAL--------- 259 (324)
Q Consensus 196 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-----~~~~~~~~lg~~~~~~~~~--~~~A~~~~--------- 259 (324)
.+|..+.+++.+|.++...|++++|+.++++++.+.+ .....+..++.++...++. +.+|+..+
T Consensus 256 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~ 335 (378)
T 3q15_A 256 VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYI 335 (378)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHH
Confidence 7888889999999999999999999999999999854 3345566778888777650 34555555
Q ss_pred -HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCC
Q psy8160 260 -NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIAS 293 (324)
Q Consensus 260 -~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (324)
.++..+|.+|...|++++ |+.+|+++++....
T Consensus 336 ~~~~~~la~~y~~~g~~~~--A~~~~~~al~~~~~ 368 (378)
T 3q15_A 336 EACARSAAAVFESSCHFEQ--AAAFYRKVLKAQED 368 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHH--HHHHHHHHHHHHHH
Confidence 678899999999999999 99999999986543
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.89 E-value=1.4e-21 Score=170.57 Aligned_cols=293 Identities=12% Similarity=0.026 Sum_probs=216.3
Q ss_pred ccchhhhHhHHHHH----HHHHHHHHHHhccCCCcccchHH--HHHH--HHHHHHhccHHHHH-----------HHHHHH
Q psy8160 17 VRVPKLQQFGKTLN----IKAIKTFQQLLYVDPSYLRANEV--HLRL--GLMFKVNNEYDSAL-----------KHLTLC 77 (324)
Q Consensus 17 ~~~~~l~~~~~~~~----~~A~~~~~~~l~~~p~~~~~~~~--~~~l--g~~~~~~~~~~~A~-----------~~~~~a 77 (324)
.+...|......+. ++|...+..+.+..+....+.++ ++.+ .......++++.+. +.++++
T Consensus 11 ~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i 90 (383)
T 3ulq_A 11 SIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEI 90 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHH
Confidence 34444555444333 89999999887755442222222 3332 22223445555555 555554
Q ss_pred hcCCCCch------hhHHHHHHHHhcccHHHHHHHHHHHHHhcCC--CcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy8160 78 LIDASPCT------FTKLEGLMFKVNNEYDSALKHLTLCLIDASP--CTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLL 149 (324)
Q Consensus 78 l~~~~~~~------~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 149 (324)
-..|.+.. .+..+|.++...|++++|+..|++++..... +....+.+++.+|.++...|++++|+.++++++
T Consensus 91 ~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al 170 (383)
T 3ulq_A 91 DKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAY 170 (383)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333322 2334899999999999999999999876322 222456889999999999999999999999999
Q ss_pred hcCCCCCc---hhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH------HHHHHHHHHHHHcCCHHHH
Q psy8160 150 KEDDLPVH---LKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG------QSLYLLGRCFAAVGKVHDA 220 (324)
Q Consensus 150 ~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~lg~~~~~~~~~~~A 220 (324)
......+. ..+.++..+|.++.. .|++++|+.+++++++..|... .++.++|.++...|++++|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~lg~~~~~-------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 243 (383)
T 3ulq_A 171 EIYKEHEAYNIRLLQCHSLFATNFLD-------LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA 243 (383)
T ss_dssp HHHHTCSTTHHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhCccchHHHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHH
Confidence 87521211 126689999999977 5599999999999998755433 5899999999999999999
Q ss_pred HHHHHHHHc-----cC-CCCHHHHHHhHHHHhhcCCCHHHHHHHH----------------HHHHhhHHHHHHcCC---C
Q psy8160 221 FLAYRNSVE-----KS-EGNADTWCSIGNKDFSNNSNREDYHQAL----------------NKYRDLGDFLVINNI---P 275 (324)
Q Consensus 221 ~~~~~~al~-----~~-p~~~~~~~~lg~~~~~~~~~~~~A~~~~----------------~~~~~lg~~~~~~~~---~ 275 (324)
+.+|++++. .+ |..+.++..+|.++...|+ +++|+.++ ..+..+|.+|...|+ +
T Consensus 244 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 322 (383)
T 3ulq_A 244 IPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGK-IDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI 322 (383)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHH
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 999999999 56 8889999999999999999 99999998 235679999999998 8
Q ss_pred CcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 276 TSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 276 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
.+ |+..+++. ...|....+...++.+. ...|++++|+..|+.
T Consensus 323 ~~--al~~~~~~-~~~~~~~~~~~~la~~y-~~~g~~~~A~~~~~~ 364 (383)
T 3ulq_A 323 QG--FFDFLESK-MLYADLEDFAIDVAKYY-HERKNFQKASAYFLK 364 (383)
T ss_dssp HH--HHHHHHHT-TCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHH
T ss_pred HH--HHHHHHHC-cCHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHH
Confidence 88 99988887 44455555666666553 457889999988865
No 65
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.88 E-value=1.5e-21 Score=163.97 Aligned_cols=214 Identities=14% Similarity=0.061 Sum_probs=174.8
Q ss_pred cHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCC--cccHHHHHHHHHHHHHHhhcHHHHHH
Q psy8160 66 EYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPC--TFTKLEVRFHIAHLHEVQRKYKTAKD 143 (324)
Q Consensus 66 ~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~ 143 (324)
++++|+.+|.++ |.+|...|++++|+.+|++++...+.. ....+.++.++|.++...|++++|+.
T Consensus 32 ~~~~A~~~~~~a-------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 98 (292)
T 1qqe_A 32 KFEEAADLCVQA-------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVD 98 (292)
T ss_dssp HHHHHHHHHHHH-------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHH-------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 599999999865 678888999999999999998764332 22335789999999999999999999
Q ss_pred HHHHHHhcCCCCCch--hhHHHHHHHHHHHhhhhhcccc-hhHHHHHHHHHHHhhhCCcc------HHHHHHHHHHHHHc
Q psy8160 144 SYEQLLKEDDLPVHL--KADICRQLGWMYHCIDTLGEKS-HRETLAIHCLQKSIEADPKS------GQSLYLLGRCFAAV 214 (324)
Q Consensus 144 ~~~~al~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~~~~------~~~~~~lg~~~~~~ 214 (324)
+|++++.+.....+. .+.++..+|.+|.. . +++++|+.+|++++++.|.. ..++..+|.++..+
T Consensus 99 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-------~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~ 171 (292)
T 1qqe_A 99 SLENAIQIFTHRGQFRRGANFKFELGEILEN-------DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD 171 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-------hhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHh
Confidence 999999886211221 15688999999965 3 49999999999999988754 46789999999999
Q ss_pred CCHHHHHHHHHHHHccCCCCHH-------HHHHhHHHHhhcCCCHHHHHHHH----------------HHHHhhHHHHH-
Q psy8160 215 GKVHDAFLAYRNSVEKSEGNAD-------TWCSIGNKDFSNNSNREDYHQAL----------------NKYRDLGDFLV- 270 (324)
Q Consensus 215 ~~~~~A~~~~~~al~~~p~~~~-------~~~~lg~~~~~~~~~~~~A~~~~----------------~~~~~lg~~~~- 270 (324)
|++++|+..|++++.+.|+++. ++.++|.++...|+ +++|+.+| ..+..++..+.
T Consensus 172 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~ 250 (292)
T 1qqe_A 172 GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD-AVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNE 250 (292)
T ss_dssp TCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC-HHHHHHHHHGGGCC---------HHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHc
Confidence 9999999999999999988754 67899999999999 99999999 23455666665
Q ss_pred -HcCCCCcchHHHHHHHhhhcCCChhhhhhchh
Q psy8160 271 -INNIPTSNNNRQCYNSYSTSIASCKHINNNKD 302 (324)
Q Consensus 271 -~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 302 (324)
..+++++ |+..|++++.++|.+..+...+.
T Consensus 251 ~~~~~~~~--A~~~~~~~~~l~~~~~~~~~~~k 281 (292)
T 1qqe_A 251 GDSEQLSE--HCKEFDNFMRLDKWKITILNKIK 281 (292)
T ss_dssp TCTTTHHH--HHHHHTTSSCCCHHHHHHHHHHH
T ss_pred CCHHHHHH--HHHHhccCCccHHHHHHHHHHHH
Confidence 3467888 99999999999998776655443
No 66
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.88 E-value=1.1e-20 Score=168.21 Aligned_cols=178 Identities=11% Similarity=0.091 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHhhcHHHHHHH----HHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDS----YEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP 198 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~----~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 198 (324)
.+.+.+|.++...+.++++... ++.+...+ +.+++.+|.+|..... ..++++|+.+|+++.+..|
T Consensus 142 ~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~-------~~a~~~Lg~~~~~~g~----~~~~~~A~~~~~~aa~~g~ 210 (452)
T 3e4b_A 142 EAGLAQVLLYRTQGTYDQHLDDVERICKAALNTT-------DICYVELATVYQKKQQ----PEQQAELLKQMEAGVSRGT 210 (452)
T ss_dssp THHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTC-------TTHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHcCC----cccHHHHHHHHHHHHHCCC
Confidence 4566677777776644444433 33333222 2288888988866211 2289999999999999999
Q ss_pred ccHHHHHHHHHHHHHc----CCHHHHHHHHHHHHccCCCCHHHHHHhHHH-H--hhcCCCHHHHHHHH---------HHH
Q psy8160 199 KSGQSLYLLGRCFAAV----GKVHDAFLAYRNSVEKSEGNADTWCSIGNK-D--FSNNSNREDYHQAL---------NKY 262 (324)
Q Consensus 199 ~~~~~~~~lg~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~--~~~~~~~~~A~~~~---------~~~ 262 (324)
..+..++.+|.+|... +++++|+.+|+++. |+++.+++++|.+ + ...++ +++|+.+| .++
T Consensus 211 ~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d-~~~A~~~~~~Aa~~g~~~A~ 286 (452)
T 3e4b_A 211 VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGD-VEQMMKYLDNGRAADQPRAE 286 (452)
T ss_dssp SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCC-HHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHCCCHHHH
Confidence 9999889999999766 79999999999997 8999999999998 4 56788 99999999 788
Q ss_pred HhhHHHHHHcC-----CCCcchHHHHHHHhhhcCCChhhhhhchhhhccCC---hhhHHHHHHHHhh
Q psy8160 263 RDLGDFLVINN-----IPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSN---REDYHQALNKYRD 321 (324)
Q Consensus 263 ~~lg~~~~~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---~~~~~~a~~~~~~ 321 (324)
++||.+|. .| ++++ |+.+|+++. |+++.+..+++.+.... ..++.+|+..|+.
T Consensus 287 ~~Lg~~y~-~G~g~~~d~~~--A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 347 (452)
T 3e4b_A 287 LLLGKLYY-EGKWVPADAKA--AEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLT 347 (452)
T ss_dssp HHHHHHHH-HCSSSCCCHHH--HHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHH
T ss_pred HHHHHHHH-cCCCCCCCHHH--HHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 99999998 44 8888 999999998 88899988888764432 3588999888875
No 67
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.88 E-value=2.4e-21 Score=154.55 Aligned_cols=159 Identities=11% Similarity=0.066 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHH----------------HHHHHHhhhhhcccchhHHHH
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQ----------------LGWMYHCIDTLGEKSHRETLA 186 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~~~~~~~~A 186 (324)
+.++..|..+...|++++|+..|++++..+ |++ +.+++. +|.++.. .|++++|
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~~~~~~~~~~~~~lg~~~~~-------~g~~~~A 73 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDR--TEMYYWTNVDKNSEISSKLATELALAYKK-------NRNYDKA 73 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHH--HHHHHHHHSCTTSHHHHHHHHHHHHHHHH-------TTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCC--hHHHHHhhhcchhhhhHHHHHHHHHHHHH-------CCCHHHH
Confidence 567778888899999999999999999988 876 447777 9999977 5599999
Q ss_pred HHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCH--HHHHHHH-----
Q psy8160 187 IHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNR--EDYHQAL----- 259 (324)
Q Consensus 187 ~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~--~~A~~~~----- 259 (324)
+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.+|+.+|.+|...+. . ..+...|
T Consensus 74 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~-~~~~~~~~~~~~~~~ 152 (208)
T 3urz_A 74 YLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE-QEKKKLETDYKKLSS 152 (208)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-HHHHHHHHHHC---C
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999987765 4 4455555
Q ss_pred -----HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChh
Q psy8160 260 -----NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCK 295 (324)
Q Consensus 260 -----~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (324)
.+++.+|.++...|++++ |+.+|+++++++|++.
T Consensus 153 ~~~~~~a~~~~g~~~~~~~~~~~--A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 153 PTKMQYARYRDGLSKLFTTRYEK--ARNSLQKVILRFPSTE 191 (208)
T ss_dssp CCHHHHHHHHHHHHHHHHHTHHH--HHHHHHHHTTTSCCHH
T ss_pred CCchhHHHHHHHHHHHHccCHHH--HHHHHHHHHHhCCCHH
Confidence 467889999999999999 9999999999999864
No 68
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.87 E-value=4.9e-20 Score=167.57 Aligned_cols=279 Identities=13% Similarity=0.069 Sum_probs=190.0
Q ss_pred HHHHHhhhhccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cC
Q psy8160 4 VIQKNLVEGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-ID 80 (324)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~ 80 (324)
++++.+...+.+...+..++.. ...+ ++|...|+++++..|. +..+|..+|..+...|++++|...|++++ ..
T Consensus 1 ~le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~---~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~ 76 (530)
T 2ooe_A 1 MAEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPS---SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV 76 (530)
T ss_dssp CHHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC
T ss_pred ChhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Confidence 3567777778888888777764 2222 9999999999999986 46689999999999999999999999999 88
Q ss_pred CCCchhhHHHHH-HHHhcccHHHHHH----HHHHHHHhcCCCcccHHHHHHHHHHHHHH---------hhcHHHHHHHHH
Q psy8160 81 ASPCTFTKLEGL-MFKVNNEYDSALK----HLTLCLIDASPCTFTKLEVRFHIAHLHEV---------QRKYKTAKDSYE 146 (324)
Q Consensus 81 ~~~~~~~~~la~-~~~~~~~~~~A~~----~~~~~l~~~~~~~~~~~~~~~~la~~~~~---------~~~~~~A~~~~~ 146 (324)
| +...+...+. +....|++++|.+ .|++++...+... ....+|...+.+... .|++++|...|+
T Consensus 77 p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~-~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~ 154 (530)
T 2ooe_A 77 L-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEI-MSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQ 154 (530)
T ss_dssp C-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTST-TCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHH
T ss_pred C-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCc-ccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHH
Confidence 9 5667766664 4455677777665 7888876533222 124677777776655 789999999999
Q ss_pred HHHhcCCCCCchhhHHHHHHHHH--------------------------HH-------hhhh------------------
Q psy8160 147 QLLKEDDLPVHLKADICRQLGWM--------------------------YH-------CIDT------------------ 175 (324)
Q Consensus 147 ~al~~~~~~~~~~~~~~~~l~~~--------------------------~~-------~~~~------------------ 175 (324)
+++. . |.......|...... +. ....
T Consensus 155 ~al~-~--P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 155 RGCV-N--PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHTT-S--CCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHh-c--hhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 9998 3 432111122111100 00 0000
Q ss_pred ---------hc--ccchh----HHHHHHHHHHHhhhCCccHHHHHHHHHHHHH-------cCCHH-------HHHHHHHH
Q psy8160 176 ---------LG--EKSHR----ETLAIHCLQKSIEADPKSGQSLYLLGRCFAA-------VGKVH-------DAFLAYRN 226 (324)
Q Consensus 176 ---------~~--~~~~~----~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~-------~~~~~-------~A~~~~~~ 226 (324)
.+ ...++ ...++..|++++..+|.++.+|+.+|..+.. .|+++ +|+..|++
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~ 311 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYER 311 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHH
Confidence 00 00001 2356677888888888888888888887775 67766 78888888
Q ss_pred HHc-cCCCCHHHHHHhHHHHhhcCCCHHHHHHHH------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCC
Q psy8160 227 SVE-KSEGNADTWCSIGNKDFSNNSNREDYHQAL------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIAS 293 (324)
Q Consensus 227 al~-~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (324)
++. ..|+++.+|..+|.++...|+ +++|...| .+|..+|.++...|++++ |+..|++|++..|.
T Consensus 312 Al~~~~p~~~~l~~~~~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~--A~~~~~~Al~~~~~ 388 (530)
T 2ooe_A 312 AISTLLKKNMLLYFAYADYEESRMK-YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKS--GRMIFKKAREDART 388 (530)
T ss_dssp HTTTTCSSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHTCTTC
T ss_pred HHHHhCcccHHHHHHHHHHHHhcCC-HHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHH--HHHHHHHHHhccCC
Confidence 886 678888888888888888888 88887777 256666665555555555 55555555555444
Q ss_pred h
Q psy8160 294 C 294 (324)
Q Consensus 294 ~ 294 (324)
+
T Consensus 389 ~ 389 (530)
T 2ooe_A 389 R 389 (530)
T ss_dssp C
T ss_pred c
Confidence 3
No 69
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.87 E-value=4.3e-22 Score=150.35 Aligned_cols=146 Identities=12% Similarity=0.129 Sum_probs=122.1
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWM 169 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~ 169 (324)
||.++...|++++|+..+++++...|... ..++.+|.+|...|++++|++.|++++..+ |++ +.++..+|.+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~----~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~--~~a~~~lg~~ 74 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKS----IKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERD--PKAHRFLGLL 74 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHH----TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC--HHHHHHHHHH
Confidence 46666666777777777777765544433 668899999999999999999999999999 888 5599999999
Q ss_pred HHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHH-HHHHHccCCCCHHHHHHhHHHHhhc
Q psy8160 170 YHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLA-YRNSVEKSEGNADTWCSIGNKDFSN 248 (324)
Q Consensus 170 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~-~~~al~~~p~~~~~~~~lg~~~~~~ 248 (324)
+.. .+++++|+.+|+++++++|+++.+++.+|.++...|++++|... ++++++++|+++.++..++.++...
T Consensus 75 ~~~-------~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 75 YEL-------EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCE 147 (150)
T ss_dssp HHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC
T ss_pred HHH-------cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 977 55999999999999999999999999999999999999887765 5899999999999999999999888
Q ss_pred CC
Q psy8160 249 NS 250 (324)
Q Consensus 249 ~~ 250 (324)
|+
T Consensus 148 G~ 149 (150)
T 4ga2_A 148 GE 149 (150)
T ss_dssp CC
T ss_pred Cc
Confidence 75
No 70
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.87 E-value=4.1e-20 Score=154.63 Aligned_cols=216 Identities=13% Similarity=0.069 Sum_probs=141.7
Q ss_pred HHHHHHHHHHh-cCCCCchhhHHHHHHHHhcc--cHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH----HHh---hc
Q psy8160 68 DSALKHLTLCL-IDASPCTFTKLEGLMFKVNN--EYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLH----EVQ---RK 137 (324)
Q Consensus 68 ~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~--~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~----~~~---~~ 137 (324)
++|+..+.++| ++|.+..++...+.++...| ++++++.++++++..+|.+. .+|...+.++ ... ++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y----~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNY----QIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCC----HHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccH----HHHHHHHHHHHHHHHhccccCC
Confidence 45666666666 66666666666666666666 66666666666666666665 5666666665 444 56
Q ss_pred HHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHH--HHHHHHHHHhhhCCccHHHHHHHHHHHHHcC
Q psy8160 138 YKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRET--LAIHCLQKSIEADPKSGQSLYLLGRCFAAVG 215 (324)
Q Consensus 138 ~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 215 (324)
+++++..+.+++..+ |.+.. +|...+++... .+.++ +++.++.++++.+|.+..+|...+.+....+
T Consensus 126 ~~~EL~~~~~~l~~~--pkny~--aW~~R~~vl~~-------l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 126 PYREFDILEAMLSSD--PKNHH--VWSYRKWLVDT-------FDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKK 194 (306)
T ss_dssp THHHHHHHHHHHHHC--TTCHH--HHHHHHHHHHH-------TTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSG
T ss_pred HHHHHHHHHHHHHhC--CCCHH--HHHHHHHHHHH-------hcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcc
Confidence 666666666666666 66644 66666666644 22444 6666666666666666666666666666666
Q ss_pred C------HHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH---------------HHHHhhHHHHHHcCC
Q psy8160 216 K------VHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL---------------NKYRDLGDFLVINNI 274 (324)
Q Consensus 216 ~------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~---------------~~~~~lg~~~~~~~~ 274 (324)
. ++++++++.+++..+|.+..+|..++.++...|. ...++..| .++..++.+|.+.|+
T Consensus 195 ~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~ 273 (306)
T 3dra_A 195 HLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR-SITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK 273 (306)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC-CGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC
T ss_pred ccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC-ChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC
Confidence 5 6666666666666677666666666666666666 44444433 455666777777777
Q ss_pred CCcchHHHHHHHhhh-cCCChhhhhhch
Q psy8160 275 PTSNNNRQCYNSYST-SIASCKHINNNK 301 (324)
Q Consensus 275 ~~~~~A~~~~~~al~-~~p~~~~~~~~l 301 (324)
.++ |+++|+.+.+ .||-....+...
T Consensus 274 ~~~--A~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 274 YNE--SRTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHH--HHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHH--HHHHHHHHHhccChHHHHHHHHH
Confidence 888 9999999986 899887776654
No 71
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.87 E-value=1e-20 Score=150.90 Aligned_cols=179 Identities=13% Similarity=0.056 Sum_probs=152.8
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHH----------------HHHHHHhcccHHHHHHHHHHHHHh
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKL----------------EGLMFKVNNEYDSALKHLTLCLID 113 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~----------------la~~~~~~~~~~~A~~~~~~~l~~ 113 (324)
.+.++..|..+...|++++|+.+|++++ .+|++..++.. +|.++...|++++|+..|++++..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4568899999999999999999999999 99999999999 999999999999999999999999
Q ss_pred cCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHH
Q psy8160 114 ASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKS 193 (324)
Q Consensus 114 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~a 193 (324)
.|.+. .+++.+|.++...|++++|+..|++++.++ |++ +.++..+|.+++... ....+.+...+.++
T Consensus 84 ~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~--~~a~~~lg~~~~~~~-----~~~~~~~~~~~~~~ 150 (208)
T 3urz_A 84 APNNV----DCLEACAEMQVCRGQEKDALRMYEKILQLE--ADN--LAANIFLGNYYYLTA-----EQEKKKLETDYKKL 150 (208)
T ss_dssp CTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHHHH-----HHHHHHHHHHHC--
T ss_pred CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC--HHHHHHHHHHHHHHh-----HHHHHHHHHHHHHH
Confidence 99886 899999999999999999999999999999 988 559999999986522 23566778888887
Q ss_pred hhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHH
Q psy8160 194 IEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNK 244 (324)
Q Consensus 194 l~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 244 (324)
+...| ...+++.+|.++...|++++|+..|+++++++|+ ......+..+
T Consensus 151 ~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~-~~~~~~l~~i 199 (208)
T 3urz_A 151 SSPTK-MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS-TEAQKTLDKI 199 (208)
T ss_dssp -CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC-HHHHHHHHHH
T ss_pred hCCCc-hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHHHH
Confidence 65443 2357888999999999999999999999999997 4444444443
No 72
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.87 E-value=2.2e-20 Score=145.17 Aligned_cols=172 Identities=17% Similarity=0.199 Sum_probs=157.1
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
...+++.+|.++...|++++|+..|++++ .+|.+...+..+|.++...|++++|+..+++++...|... .++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~ 82 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV----KVATVL 82 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHH
Confidence 45688999999999999999999999999 9999999999999999999999999999999998877665 789999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
|.++...|++++|+..+++++... |.+ ..++..+|.++.. .+++++|+.+++++++..|.++.++..+|
T Consensus 83 a~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~~a~~~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~la 151 (186)
T 3as5_A 83 GLTYVQVQKYDLAVPLLIKVAEAN--PIN--FNVRFRLGVALDN-------LGRFDEAIDSFKIALGLRPNEGKVHRAIA 151 (186)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC--cHh--HHHHHHHHHHHHH-------cCcHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 999999999999999999999998 777 4588999999976 45899999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHH
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEKSEGNAD 236 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~~p~~~~ 236 (324)
.++...|++++|+..+++++..+|+++.
T Consensus 152 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 152 FSYEQMGRHEEALPHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence 9999999999999999999999887653
No 73
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.87 E-value=1.1e-20 Score=155.93 Aligned_cols=206 Identities=11% Similarity=0.100 Sum_probs=168.1
Q ss_pred cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCch
Q psy8160 79 IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHL 158 (324)
Q Consensus 79 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 158 (324)
.+|.+......+|..+...|++++|+..|++++...|.+. ....+++.+|.++...|++++|+..|++++... |++.
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--p~~~ 86 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHE-WAADAQFYLARAYYQNKEYLLAASEYERFIQIY--QIDP 86 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCST-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCT
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc-chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC--CCCc
Confidence 5788888899999999999999999999999999888763 224889999999999999999999999999998 6543
Q ss_pred h-hHHHHHHHHHHHhhhh-hcccchhHHHHHHHHHHHhhhCCccHHHH-----------------HHHHHHHHHcCCHHH
Q psy8160 159 K-ADICRQLGWMYHCIDT-LGEKSHRETLAIHCLQKSIEADPKSGQSL-----------------YLLGRCFAAVGKVHD 219 (324)
Q Consensus 159 ~-~~~~~~l~~~~~~~~~-~~~~~~~~~~A~~~~~~al~~~~~~~~~~-----------------~~lg~~~~~~~~~~~ 219 (324)
. ..+++.+|.++..... .....+++++|+..|+++++.+|+++.++ +.+|.++...|++++
T Consensus 87 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 166 (261)
T 3qky_A 87 RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEA 166 (261)
T ss_dssp THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 2 6789999999965110 00013499999999999999999987655 889999999999999
Q ss_pred HHHHHHHHHccCCC---CHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhh
Q psy8160 220 AFLAYRNSVEKSEG---NADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKH 296 (324)
Q Consensus 220 A~~~~~~al~~~p~---~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 296 (324)
|+..|++++...|+ .+.+++.+|.+|...|+ ...+ ....|++++ |+..|+++++.+|+++.
T Consensus 167 A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~-~~~~-------------~~~~~~~~~--A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 167 AAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAE-QSVR-------------ARQPERYRR--AVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHH-TSCG-------------GGHHHHHHH--HHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcc-cchh-------------hcccchHHH--HHHHHHHHHHHCCCChH
Confidence 99999999999998 46788888888887765 2111 123466888 99999999999999987
Q ss_pred hhhchhh
Q psy8160 297 INNNKDF 303 (324)
Q Consensus 297 ~~~~l~~ 303 (324)
+......
T Consensus 231 ~~~a~~~ 237 (261)
T 3qky_A 231 LRTAEEL 237 (261)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555443
No 74
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.86 E-value=1.4e-21 Score=147.55 Aligned_cols=141 Identities=12% Similarity=0.076 Sum_probs=118.4
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHH
Q psy8160 127 HIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYL 206 (324)
Q Consensus 127 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 206 (324)
.||.++...|++++|+..+++++..+ |.. +..++.+|.+|+. .+++++|+.+|+++++++|+++.+|+.
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~--p~~--~~~~~~la~~y~~-------~~~~~~A~~~~~~al~~~p~~~~a~~~ 70 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSP--RQK--SIKGFYFAKLYYE-------AKEYDLAKKYICTYINVQERDPKAHRF 70 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSH--HHH--HTTHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccC--ccc--HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 47888888999999999999998877 765 5588899999977 559999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHH-HH
Q psy8160 207 LGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQC-YN 285 (324)
Q Consensus 207 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~-~~ 285 (324)
+|.++...|++++|+..|+++++++|+++++|+.+|.++...|+ +++ |+.. ++
T Consensus 71 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~------------------------~~~--aa~~~~~ 124 (150)
T 4ga2_A 71 LGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDV------------------------TDG--RAKYWVE 124 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCS------------------------SSS--HHHHHHH
T ss_pred HHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------------------hHH--HHHHHHH
Confidence 99999999999999999999999999999988888888777776 677 7776 48
Q ss_pred HhhhcCCChhhhhhchhhh
Q psy8160 286 SYSTSIASCKHINNNKDFS 304 (324)
Q Consensus 286 ~al~~~p~~~~~~~~l~~~ 304 (324)
+|++++|+++.+......+
T Consensus 125 ~al~l~P~~~~~~~l~~~l 143 (150)
T 4ga2_A 125 RAAKLFPGSPAVYKLKEQL 143 (150)
T ss_dssp HHHHHSTTCHHHHHHHHHH
T ss_pred HHHHhCcCCHHHHHHHHHH
Confidence 9999999999987766544
No 75
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.86 E-value=8.1e-21 Score=177.38 Aligned_cols=189 Identities=10% Similarity=0.032 Sum_probs=156.7
Q ss_pred cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHH--------HhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHh
Q psy8160 79 IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCL--------IDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLK 150 (324)
Q Consensus 79 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l--------~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 150 (324)
.+|++..+....+ ...|++++|++.+++++ ...|.+. ++++.+|.++...|++++|+..|+++++
T Consensus 389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~----~~~~~~a~~~~~~g~~~~A~~~~~~al~ 461 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESV----ELPLMEVRALLDLGDVAKATRKLDDLAE 461 (681)
T ss_dssp CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCS----HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccch----hHHHHHHHHHHhcCCHHHHHHHHHHHhc
Confidence 5787777777666 77899999999999999 6677766 8899999999999999999999999999
Q ss_pred cCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q psy8160 151 EDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK 230 (324)
Q Consensus 151 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 230 (324)
.+ |++ ..+++.+|.++.. .+++++|+..|+++++++|+++.+++.+|.++...|++++ +..|++++++
T Consensus 462 ~~--p~~--~~a~~~lg~~~~~-------~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~ 529 (681)
T 2pzi_A 462 RV--GWR--WRLVWYRAVAELL-------TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST 529 (681)
T ss_dssp HH--CCC--HHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH
T ss_pred cC--cch--HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh
Confidence 99 888 5599999999977 4599999999999999999999999999999999999999 9999999999
Q ss_pred CCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchH-HHHHHHhhh
Q psy8160 231 SEGNADTWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNN-RQCYNSYST 289 (324)
Q Consensus 231 ~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A-~~~~~~al~ 289 (324)
+|+++.+|+++|.++...|+ +++|+..| .+|.++|.++...++..+ + ...+++|++
T Consensus 530 ~P~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~A~~ 597 (681)
T 2pzi_A 530 NDGVISAAFGLARARSAEGD-RVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSE--VTEEQIRDAAR 597 (681)
T ss_dssp CTTCHHHHHHHHHHHHHTTC-HHHHHHHHHTSCTTSTTHHHHHHHHHHHTC---------CCHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHcCC-HHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCC--CCHHHHHHHHH
Confidence 99999999999999999999 88888777 677777777766665444 3 444444443
No 76
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.85 E-value=1.1e-20 Score=176.46 Aligned_cols=182 Identities=12% Similarity=-0.024 Sum_probs=164.8
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh---------cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCccc
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL---------IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFT 120 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al---------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~ 120 (324)
+..+++..| ...|++++|++.|++++ .+|.+..++..+|.++...|++++|+..|++++...|.+.
T Consensus 393 ~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-- 467 (681)
T 2pzi_A 393 DVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRW-- 467 (681)
T ss_dssp STTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH--
T ss_pred CcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchH--
Confidence 334556555 77899999999999997 4599999999999999999999999999999999998886
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc
Q psy8160 121 KLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS 200 (324)
Q Consensus 121 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 200 (324)
.+++.+|.++...|++++|+..|+++++.+ |++ ..++..+|.++.. .|++++ +..|+++++.+|.+
T Consensus 468 --~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~--~~~~~~lg~~~~~-------~g~~~~-~~~~~~al~~~P~~ 533 (681)
T 2pzi_A 468 --RLVWYRAVAELLTGDYDSATKHFTEVLDTF--PGE--LAPKLALAATAEL-------AGNTDE-HKFYQTVWSTNDGV 533 (681)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTC--SHHHHHHHHHHHH-------HTCCCT-TCHHHHHHHHCTTC
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC--hHHHHHHHHHHHH-------cCChHH-HHHHHHHHHhCCch
Confidence 899999999999999999999999999999 988 4599999999977 458999 99999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCC
Q psy8160 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNS 250 (324)
Q Consensus 201 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 250 (324)
+.+|+++|.++...|++++|+..|+++++++|+++.+|.++|.++...+.
T Consensus 534 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 534 ISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999999999999999999977554
No 77
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.85 E-value=4.5e-20 Score=154.97 Aligned_cols=198 Identities=12% Similarity=0.055 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHh-cCCC------CchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcc--cHH
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHLTLCL-IDAS------PCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTF--TKL 122 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~--~~~ 122 (324)
+.+...|.+|...|++++|+.+|.+++ +.+. ...++..+|.++...|++++|+.+|++++...+.... ...
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 345555778999999999999999999 6422 2456777999999999999999999999987654332 335
Q ss_pred HHHHHHHHHHHHh-hcHHHHHHHHHHHHhcCCCCCc----hhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC
Q psy8160 123 EVRFHIAHLHEVQ-RKYKTAKDSYEQLLKEDDLPVH----LKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD 197 (324)
Q Consensus 123 ~~~~~la~~~~~~-~~~~~A~~~~~~al~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 197 (324)
.++.++|.+|... |++++|+.+|++++... |.. ..+.++..+|.++.. .|++++|+.+|+++++..
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~--~~~~~~~~~~~~~~~lg~~~~~-------~g~~~~A~~~~~~al~~~ 188 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWY--AQDQSVALSNKCFIKCADLKAL-------DGQYIEASDIYSKLIKSS 188 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH--HhCCChHHHHHHHHHHHHHHHH-------hCCHHHHHHHHHHHHHHH
Confidence 6899999999996 99999999999999887 432 114578899999977 559999999999999999
Q ss_pred CccHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH-----HHHhHHHHh--hcCCCHHHHHHHH
Q psy8160 198 PKSGQ-------SLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADT-----WCSIGNKDF--SNNSNREDYHQAL 259 (324)
Q Consensus 198 ~~~~~-------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~-----~~~lg~~~~--~~~~~~~~A~~~~ 259 (324)
|.++. ++..+|.++..+|++++|+..|++++.++|+.+.. +..++..+. ..++ +++|+..|
T Consensus 189 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~-~~~A~~~~ 263 (292)
T 1qqe_A 189 MGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ-LSEHCKEF 263 (292)
T ss_dssp SSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT-HHHHHHHH
T ss_pred hcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH-HHHHHHHh
Confidence 87653 67899999999999999999999999999987664 445666664 5678 99999988
No 78
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.85 E-value=1.7e-18 Score=154.21 Aligned_cols=276 Identities=10% Similarity=0.037 Sum_probs=166.0
Q ss_pred ccccchhhhH-hHHHH-----H-HHHHHHHHHHhccCCCcc------------------------------cchHHHHHH
Q psy8160 15 TSVRVPKLQQ-FGKTL-----N-IKAIKTFQQLLYVDPSYL------------------------------RANEVHLRL 57 (324)
Q Consensus 15 ~~~~~~~l~~-~~~~~-----~-~~A~~~~~~~l~~~p~~~------------------------------~~~~~~~~l 57 (324)
+|.....||. +.... . ++|+.+|+++++..+... ..+.+++.+
T Consensus 68 ~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~L 147 (452)
T 3e4b_A 68 SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQ 147 (452)
T ss_dssp ---CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHH
Confidence 6677777777 33322 2 788888888887543210 011234444
Q ss_pred HHHHHHhc----cHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcc---cHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Q psy8160 58 GLMFKVNN----EYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNN---EYDSALKHLTLCLIDASPCTFTKLEVRFHIA 129 (324)
Q Consensus 58 g~~~~~~~----~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~---~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la 129 (324)
|.+|...+ +.+.+..+++.+. .+|. +...+|.++...| ++++|++.|+++....+... ..++.+|
T Consensus 148 g~~y~~~~~~~~~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a----~~~~~Lg 220 (452)
T 3e4b_A 148 VLLYRTQGTYDQHLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA----QRVDSVA 220 (452)
T ss_dssp HHHHHHHTCGGGGHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH----HHHHHHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH----HHHHHHH
Confidence 44444444 2333333444444 3333 6667777777777 77777777777777666553 4457777
Q ss_pred HHHHHh----hcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHH
Q psy8160 130 HLHEVQ----RKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLY 205 (324)
Q Consensus 130 ~~~~~~----~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 205 (324)
.+|... +++++|+..|+++. |++ +.+++.+|.+|+.... .+++++|+.+|+++.+. .++.+++
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~aa-----~g~--~~a~~~Lg~~~~~~~~----~~d~~~A~~~~~~Aa~~--g~~~A~~ 287 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEKIA-----PGY--PASWVSLAQLLYDFPE----LGDVEQMMKYLDNGRAA--DQPRAEL 287 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHG-----GGS--THHHHHHHHHHHHSGG----GCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHc-----CCC--HHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHHC--CCHHHHH
Confidence 777554 57777777777776 223 3377777777442111 33777777777777654 3677777
Q ss_pred HHHHHHHHcC-----CHHHHHHHHHHHHccCCCCHHHHHHhHHHHhh----cCCCHHHHHHHH---------HHHHhhHH
Q psy8160 206 LLGRCFAAVG-----KVHDAFLAYRNSVEKSEGNADTWCSIGNKDFS----NNSNREDYHQAL---------NKYRDLGD 267 (324)
Q Consensus 206 ~lg~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~~A~~~~---------~~~~~lg~ 267 (324)
.||.+|. .| ++++|+.+|+++. |.++.+++++|.+|.. ..+ +++|+.+| .+.++||.
T Consensus 288 ~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d-~~~A~~~~~~Aa~~g~~~A~~~Lg~ 362 (452)
T 3e4b_A 288 LLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVY-PQKALDHLLTAARNGQNSADFAIAQ 362 (452)
T ss_dssp HHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCC-HHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred HHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcC-HHHHHHHHHHHHhhChHHHHHHHHH
Confidence 7777776 44 7777777777776 7777777777777766 336 77777777 66777777
Q ss_pred HHHH----cCCCCcchHHHHHHHhhhcCCChhhhhhchhhhc-cCChhhHHHHHHHH
Q psy8160 268 FLVI----NNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSN-NSNREDYHQALNKY 319 (324)
Q Consensus 268 ~~~~----~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~~~~~~~a~~~~ 319 (324)
+|.. ..++.+ |+..|++|.+..+. .....+..+. ....++..+|....
T Consensus 363 ~y~~G~g~~~d~~~--A~~~~~~A~~~g~~--~a~~~l~~l~~~~~~~~~~~a~~~~ 415 (452)
T 3e4b_A 363 LFSQGKGTKPDPLN--AYVFSQLAKAQDTP--EANDLATQLEAPLTPAQRAEGQRLV 415 (452)
T ss_dssp HHHSCTTBCCCHHH--HHHHHHHHHTTCCH--HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHhCCCCCCCHHH--HHHHHHHHHHCCCH--HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 7764 235666 77777777765443 3333333332 23344555554443
No 79
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=5.9e-19 Score=149.31 Aligned_cols=215 Identities=10% Similarity=-0.026 Sum_probs=184.2
Q ss_pred HHHHHhhhhccccccchhhhHhHHHH-------H---------HHHHHHHHHHhc-cCCCcccchHHHHHHHHHHHHhcc
Q psy8160 4 VIQKNLVEGIVTSVRVPKLQQFGKTL-------N---------IKAIKTFQQLLY-VDPSYLRANEVHLRLGLMFKVNNE 66 (324)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~~~-------~---------~~A~~~~~~~l~-~~p~~~~~~~~~~~lg~~~~~~~~ 66 (324)
..++.+...+.+++++..++.+.... + ++|+..|+++++ ++|+ ...+|+.+|.++...|+
T Consensus 38 ~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~---~~~~~~~~~~~~~~~~~ 114 (308)
T 2ond_A 38 AYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK---NMLLYFAYADYEESRMK 114 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT---CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHhcCC
Confidence 45666777888899998888765421 1 789999999999 7886 45689999999999999
Q ss_pred HHHHHHHHHHHh-cCCCCch-hhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH-HhhcHHHHHH
Q psy8160 67 YDSALKHLTLCL-IDASPCT-FTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHE-VQRKYKTAKD 143 (324)
Q Consensus 67 ~~~A~~~~~~al-~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~ 143 (324)
+++|...|++++ .+|.+.. ++..+|.++...|++++|+..|++++...|... .++...+.+.. ..|++++|+.
T Consensus 115 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~----~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 115 YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH----HVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCT----HHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999 9999886 899999999999999999999999998877654 66666666543 3699999999
Q ss_pred HHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhh---CC-ccHHHHHHHHHHHHHcCCHHH
Q psy8160 144 SYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA---DP-KSGQSLYLLGRCFAAVGKVHD 219 (324)
Q Consensus 144 ~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~~~lg~~~~~~~~~~~ 219 (324)
+|++++..+ |++ +.++..++.++.. .|++++|+..|++++.. .| .....|..++......|++++
T Consensus 191 ~~~~al~~~--p~~--~~~~~~~~~~~~~-------~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~ 259 (308)
T 2ond_A 191 IFELGLKKY--GDI--PEYVLAYIDYLSH-------LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 259 (308)
T ss_dssp HHHHHHHHH--TTC--HHHHHHHHHHHHT-------TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHhC--CCc--HHHHHHHHHHHHH-------CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999999 887 5599999988865 45999999999999995 55 367899999999999999999
Q ss_pred HHHHHHHHHccCCCCHH
Q psy8160 220 AFLAYRNSVEKSEGNAD 236 (324)
Q Consensus 220 A~~~~~~al~~~p~~~~ 236 (324)
|...++++++..|++++
T Consensus 260 a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 260 ILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHHHHcccccc
Confidence 99999999999998653
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.84 E-value=8.8e-19 Score=152.07 Aligned_cols=253 Identities=9% Similarity=-0.079 Sum_probs=201.5
Q ss_pred HHHHHHHHHHhccCCCccc--chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchh------hHHHHHHHHhcccHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLR--ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTF------TKLEGLMFKVNNEYD 101 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~------~~~la~~~~~~~~~~ 101 (324)
++|+..+++++...|.... ...++..+|.++...|++++|...+++++ ..|..... ...+|.++...|+++
T Consensus 31 ~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~ 110 (373)
T 1hz4_A 31 DEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQ 110 (373)
T ss_dssp HHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHH
Confidence 9999999999998875322 22367889999999999999999999999 65443322 456899999999999
Q ss_pred HHHHHHHHHHHhcCCCc----ccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCch-hhHHHHHHHHHHHhhhhh
Q psy8160 102 SALKHLTLCLIDASPCT----FTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHL-KADICRQLGWMYHCIDTL 176 (324)
Q Consensus 102 ~A~~~~~~~l~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 176 (324)
+|+..+++++...+... .....++..+|.++...|++++|...+++++......... ...++..+|.++..
T Consensus 111 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~---- 186 (373)
T 1hz4_A 111 TAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLA---- 186 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHH----
Confidence 99999999987643221 2244678889999999999999999999999876221111 24578888888866
Q ss_pred cccchhHHHHHHHHHHHhhhCCc--cHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHccCCCC----HHHHHHhHHHH
Q psy8160 177 GEKSHRETLAIHCLQKSIEADPK--SGQSLY-----LLGRCFAAVGKVHDAFLAYRNSVEKSEGN----ADTWCSIGNKD 245 (324)
Q Consensus 177 ~~~~~~~~~A~~~~~~al~~~~~--~~~~~~-----~lg~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~ 245 (324)
.|++++|+.++++++...+. .+..+. .++.++...|++++|...+++++...|.. ...+..+|.++
T Consensus 187 ---~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 263 (373)
T 1hz4_A 187 ---RGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263 (373)
T ss_dssp ---HTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred ---cCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence 55999999999999876322 221222 34566889999999999999999887754 33678899999
Q ss_pred hhcCCCHHHHHHHH-----------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCC
Q psy8160 246 FSNNSNREDYHQAL-----------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIAS 293 (324)
Q Consensus 246 ~~~~~~~~~A~~~~-----------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (324)
...|+ +++|+..+ .++..+|.++...|++++ |...+++++.+.+.
T Consensus 264 ~~~g~-~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~--A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 264 ILLGE-FEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSD--AQRVLLDALKLANR 325 (373)
T ss_dssp HHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH--HHHHHHHHHHHHHH
T ss_pred HHcCC-HHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHH--HHHHHHHHHHHhcc
Confidence 99999 99999888 367788999999999999 99999999988764
No 81
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.84 E-value=2.2e-20 Score=157.40 Aligned_cols=231 Identities=12% Similarity=0.033 Sum_probs=178.6
Q ss_pred CCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcC----CCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC-
Q psy8160 80 DASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDAS----PCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDL- 154 (324)
Q Consensus 80 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~----~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~- 154 (324)
+|.....+..+|.++...|++++|+..+++++.... +.......++..+|.++...|++++|+..|++++.....
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 466667778899999999999999999999987521 122344578999999999999999999999999976200
Q ss_pred ---CCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC--------CccHHHHHHHHHHHHHcCCHHHHHHH
Q psy8160 155 ---PVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD--------PKSGQSLYLLGRCFAAVGKVHDAFLA 223 (324)
Q Consensus 155 ---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--------~~~~~~~~~lg~~~~~~~~~~~A~~~ 223 (324)
.......++..+|.++.. .+++++|+.+++++++.. |....++..+|.++...|++++|+.+
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~-------~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 175 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGK-------RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYY 175 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHT-------TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHH-------cCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 122236689999999976 559999999999999874 66678899999999999999999999
Q ss_pred HHHHHcc--------CCCCHHHHHHhHHHHhhcCCCHHHHHHHH--------------------------HHHHhhHHHH
Q psy8160 224 YRNSVEK--------SEGNADTWCSIGNKDFSNNSNREDYHQAL--------------------------NKYRDLGDFL 269 (324)
Q Consensus 224 ~~~al~~--------~p~~~~~~~~lg~~~~~~~~~~~~A~~~~--------------------------~~~~~lg~~~ 269 (324)
|++++.. .|..+.++..+|.++...|+ +++|+..| ..+..++..+
T Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (311)
T 3nf1_A 176 YQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK-FKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQ 254 (311)
T ss_dssp HHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCch
Confidence 9999998 67778899999999999999 99999998 2234455566
Q ss_pred HHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 270 VINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 270 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
...+.+.+ |+..+.++....|..+.+...++.+. ...|++++|+..|+.
T Consensus 255 ~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~ 303 (311)
T 3nf1_A 255 KDGTSFGE--YGGWYKACKVDSPTVTTTLKNLGALY-RRQGKFEAAETLEEA 303 (311)
T ss_dssp ---CCSCC--CC---------CHHHHHHHHHHHHHH-HHHTCHHHHHHHHHH
T ss_pred hhHHHHHH--HHHHHhhcCCCCchHHHHHHHHHHHH-HHCCCHHHHHHHHHH
Confidence 67788999 99999999999999999988888764 467999999998875
No 82
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.84 E-value=1.2e-18 Score=145.75 Aligned_cols=216 Identities=7% Similarity=-0.044 Sum_probs=192.4
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhc--cHHHHHHHHHHHh-cCCCCchhhHHHHHHH----Hhc---ccH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNN--EYDSALKHLTLCL-IDASPCTFTKLEGLMF----KVN---NEY 100 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~--~~~~A~~~~~~al-~~~~~~~~~~~la~~~----~~~---~~~ 100 (324)
++|+..+.++|.++|++ ..++...|.+....+ ++++++..+..++ .+|.+..++...+.++ ... +++
T Consensus 50 ~~aL~~t~~~L~~nP~~---~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGINELASH---YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHHHCcHH---HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 89999999999999974 568999999999999 9999999999999 9999999999998888 666 789
Q ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHH--HHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcc
Q psy8160 101 DSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYK--TAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGE 178 (324)
Q Consensus 101 ~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~--~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 178 (324)
++++.++++++..+|.+. .+|...+.+....|.++ ++++.+.+++..+ |.+.. +|...+.+........
T Consensus 127 ~~EL~~~~~~l~~~pkny----~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~N~s--AW~~R~~ll~~l~~~~- 197 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNH----HVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LKNNS--AWSHRFFLLFSKKHLA- 197 (306)
T ss_dssp HHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TTCHH--HHHHHHHHHHSSGGGC-
T ss_pred HHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CCCHH--HHHHHHHHHHhccccc-
Confidence 999999999999999987 89999999999999998 9999999999999 88855 9999999986632100
Q ss_pred cchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHH-HHHHHHHHHccC---CCCHHHHHHhHHHHhhcCCCHHH
Q psy8160 179 KSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHD-AFLAYRNSVEKS---EGNADTWCSIGNKDFSNNSNRED 254 (324)
Q Consensus 179 ~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~-A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~~ 254 (324)
....+++++.++.+++..+|.+..+|+.++.++...|+..+ ...++.+++.++ |.++.++..++.++.+.|+ .++
T Consensus 198 ~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~-~~~ 276 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK-YNE 276 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC-HHH
T ss_pred hhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC-HHH
Confidence 01138999999999999999999999999999999998655 556788888876 8899999999999999999 999
Q ss_pred HHHHH
Q psy8160 255 YHQAL 259 (324)
Q Consensus 255 A~~~~ 259 (324)
|+++|
T Consensus 277 A~~~~ 281 (306)
T 3dra_A 277 SRTVY 281 (306)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99998
No 83
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.84 E-value=1.4e-19 Score=140.50 Aligned_cols=171 Identities=14% Similarity=0.160 Sum_probs=107.0
Q ss_pred hhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHH
Q psy8160 86 FTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQ 165 (324)
Q Consensus 86 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 165 (324)
.+..+|.++...|++++|+..+++++...|... .++..+|.++...|++++|+..+++++... |.+ ..++..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~ 81 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDV----DVALHLGIAYVKTGAVDRGTELLERSLADA--PDN--VKVATV 81 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC--HHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCC--HHHHHH
Confidence 344456666666666666666666665555443 556666666666666666666666666665 554 335666
Q ss_pred HHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHH
Q psy8160 166 LGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245 (324)
Q Consensus 166 l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 245 (324)
+|.++.. .+++++|+.+++++++..|.++.++..+|.++...|++++|+..+++++...|.++.++..+|.++
T Consensus 82 ~a~~~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 154 (186)
T 3as5_A 82 LGLTYVQ-------VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY 154 (186)
T ss_dssp HHHHHHH-------HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHH-------hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 6666644 336666666666666666666666666666666666666666666666666666665555555555
Q ss_pred hhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhh
Q psy8160 246 FSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHI 297 (324)
Q Consensus 246 ~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 297 (324)
...|+ +++ |+..|+++++.+|+++..
T Consensus 155 ~~~~~------------------------~~~--A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 155 EQMGR------------------------HEE--ALPHFKKANELDEGASVE 180 (186)
T ss_dssp HHTTC------------------------HHH--HHHHHHHHHHHHHCCCGG
T ss_pred HHcCC------------------------HHH--HHHHHHHHHHcCCCchhh
Confidence 55555 666 888888888888876543
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.84 E-value=2.5e-19 Score=156.01 Aligned_cols=216 Identities=13% Similarity=0.092 Sum_probs=179.4
Q ss_pred HHHHHHHHHHhccCC---CcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCC-------chhhHHHHHHHHhccc
Q psy8160 31 IKAIKTFQQLLYVDP---SYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASP-------CTFTKLEGLMFKVNNE 99 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p---~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~-------~~~~~~la~~~~~~~~ 99 (324)
++|++.|.+++++.+ +.+....+++.+|.+|...|+++.|+.++++++ ..+.. ..++..+|.++...|+
T Consensus 118 ~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~ 197 (378)
T 3q15_A 118 VEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKH 197 (378)
T ss_dssp HHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCC
Confidence 999999999998754 334456789999999999999999999999999 54332 3345668999999999
Q ss_pred HHHHHHHHHHHHHhcCC--CcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHh-----cCCCCCchhhHHHHHHHHHHHh
Q psy8160 100 YDSALKHLTLCLIDASP--CTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLK-----EDDLPVHLKADICRQLGWMYHC 172 (324)
Q Consensus 100 ~~~A~~~~~~~l~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-----~~~~~~~~~~~~~~~l~~~~~~ 172 (324)
+++|+++|++++...+. .......++.++|.++...|++++|+.+|++++. .+ |.. +.++..+|.++..
T Consensus 198 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~--~~~--~~~~~~la~~~~~ 273 (378)
T 3q15_A 198 YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP--DLL--PKVLFGLSWTLCK 273 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG--GGH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC--hhH--HHHHHHHHHHHHH
Confidence 99999999999876432 2224557899999999999999999999999998 44 544 6699999999977
Q ss_pred hhhhcccchhHHHHHHHHHHHhhhC-----CccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHccCCCCHHHHHHhHHH
Q psy8160 173 IDTLGEKSHRETLAIHCLQKSIEAD-----PKSGQSLYLLGRCFAAVGK---VHDAFLAYRNSVEKSEGNADTWCSIGNK 244 (324)
Q Consensus 173 ~~~~~~~~~~~~~A~~~~~~al~~~-----~~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~lg~~ 244 (324)
.|++++|+.+++++++.. |.....+..++.++...++ +.+|+..+++. ...|....++..+|.+
T Consensus 274 -------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 274 -------AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAV 345 (378)
T ss_dssp -------TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred -------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHH
Confidence 559999999999999874 3344567788889999998 88899988873 4445556788899999
Q ss_pred HhhcCCCHHHHHHHH
Q psy8160 245 DFSNNSNREDYHQAL 259 (324)
Q Consensus 245 ~~~~~~~~~~A~~~~ 259 (324)
|...|+ +++|+.+|
T Consensus 346 y~~~g~-~~~A~~~~ 359 (378)
T 3q15_A 346 FESSCH-FEQAAAFY 359 (378)
T ss_dssp HHHTTC-HHHHHHHH
T ss_pred HHHCCC-HHHHHHHH
Confidence 999999 99999987
No 85
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.83 E-value=1.1e-18 Score=140.86 Aligned_cols=173 Identities=9% Similarity=-0.016 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCc---hhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPC---TFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRF 126 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 126 (324)
++.++.+|..+...|++++|+..|++++ ..|.+. .++..+|.++...|++++|+..|++++...|.+.. ...+++
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~-~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT-HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc-HHHHHH
Confidence 4567778888888888888888888888 777654 45666788888888888888888888877776542 234677
Q ss_pred HHHHHHHH------------------hhcHHHHHHHHHHHHhcCCCCCchhh-HHH--------------HHHHHHHHhh
Q psy8160 127 HIAHLHEV------------------QRKYKTAKDSYEQLLKEDDLPVHLKA-DIC--------------RQLGWMYHCI 173 (324)
Q Consensus 127 ~la~~~~~------------------~~~~~~A~~~~~~al~~~~~~~~~~~-~~~--------------~~l~~~~~~~ 173 (324)
.+|.++.. .|++++|+..|++++... |++..+ .+. ..+|.++..
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~- 159 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE- 159 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 77777765 579999999999999999 877441 111 223333322
Q ss_pred hhhcccchhHHHHHHHHHHHhhhCCccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q psy8160 174 DTLGEKSHRETLAIHCLQKSIEADPKSG---QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG 233 (324)
Q Consensus 174 ~~~~~~~~~~~~A~~~~~~al~~~~~~~---~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 233 (324)
.+++++|+..|+++++..|+++ ++++.+|.++..+|++++|+..++++....|+
T Consensus 160 ------~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 160 ------RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ------HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ------cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 2244445555555554444443 34444555555555555555555444444443
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.83 E-value=1.2e-19 Score=150.63 Aligned_cols=202 Identities=18% Similarity=0.203 Sum_probs=151.9
Q ss_pred cchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 49 RANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 49 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
....++..+|.++...|++++|+.+|++++ +..++.. .........++..+
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--------------------------~~~~~~~---~~~~~~~~~~~~~l 91 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDAL--------------------------AIREKTL---GKDHPAVAATLNNL 91 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------------------HHHHHHT---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHH--------------------------HHHHHHc---CCcchHHHHHHHHH
Confidence 345566667777777777777766666443 1111111 11122345788999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcC------CCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhh------
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKED------DLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA------ 196 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------ 196 (324)
|.++...|++++|+.+|++++... ..|.. ..++..+|.++.. .+++++|+.+++++++.
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~~la~~~~~-------~g~~~~A~~~~~~al~~~~~~~~ 162 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDV--AKQLNNLALLCQN-------QGKAEEVEYYYRRALEIYATRLG 162 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHHT-------TTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHH--HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999998772 11332 6699999999977 55999999999999998
Q ss_pred --CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc---------CCCCHHHHHHhHHHHhhcCCCHHHH------HHHH
Q psy8160 197 --DPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK---------SEGNADTWCSIGNKDFSNNSNREDY------HQAL 259 (324)
Q Consensus 197 --~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---------~p~~~~~~~~lg~~~~~~~~~~~~A------~~~~ 259 (324)
.|....++..+|.++...|++++|+..+++++.+ .+.....|..++..+...+. ...+ ...+
T Consensus 163 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 241 (283)
T 3edt_B 163 PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDK-RRDSAPYGEYGSWY 241 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCC-CCC-----------
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHH
Confidence 7777899999999999999999999999999986 55666778888877776554 3333 2222
Q ss_pred -----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcC
Q psy8160 260 -----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSI 291 (324)
Q Consensus 260 -----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~ 291 (324)
.++..+|.+|...|++++ |+.+|+++++..
T Consensus 242 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~--A~~~~~~al~~~ 282 (283)
T 3edt_B 242 KACKVDSPTVNTTLRSLGALYRRQGKLEA--AHTLEDCASRNR 282 (283)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHTTC
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHhh
Confidence 688999999999999999 999999998753
No 87
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.81 E-value=3.8e-18 Score=137.61 Aligned_cols=183 Identities=9% Similarity=0.059 Sum_probs=143.9
Q ss_pred chhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh-hHH
Q psy8160 84 CTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK-ADI 162 (324)
Q Consensus 84 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~ 162 (324)
......+|..+...|++++|+..|++++...|.+.. ...+++.+|.++...|++++|+..|++++..+ |++.. ..+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY-SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 345667899999999999999999999998776542 34689999999999999999999999999999 77644 358
Q ss_pred HHHHHHHHHhhh-----------hhcccchhHHHHHHHHHHHhhhCCccHHHH-----------------HHHHHHHHHc
Q psy8160 163 CRQLGWMYHCID-----------TLGEKSHRETLAIHCLQKSIEADPKSGQSL-----------------YLLGRCFAAV 214 (324)
Q Consensus 163 ~~~l~~~~~~~~-----------~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-----------------~~lg~~~~~~ 214 (324)
++.+|.++.... ......+++++|+..|+++++.+|+++.++ +.+|.++...
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~ 160 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTER 160 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 899998886421 000124589999999999999999987554 5788899999
Q ss_pred CCHHHHHHHHHHHHccCCCCH---HHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcC
Q psy8160 215 GKVHDAFLAYRNSVEKSEGNA---DTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSI 291 (324)
Q Consensus 215 ~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~ 291 (324)
|++++|+..|+++++..|+++ ++++.+|.++...|+ +++ |++.++++....
T Consensus 161 ~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~------------------------~~~--A~~~~~~l~~~~ 214 (225)
T 2yhc_A 161 GAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQM------------------------NAQ--AEKVAKIIAANS 214 (225)
T ss_dssp TCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTC------------------------HHH--HHHHHHHHHHCC
T ss_pred CcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCC------------------------cHH--HHHHHHHHHhhC
Confidence 999999999999999999876 456666666666666 555 666666666666
Q ss_pred CChh
Q psy8160 292 ASCK 295 (324)
Q Consensus 292 p~~~ 295 (324)
|++.
T Consensus 215 ~~~~ 218 (225)
T 2yhc_A 215 SNTL 218 (225)
T ss_dssp SCCC
T ss_pred CCch
Confidence 6543
No 88
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.81 E-value=3.3e-19 Score=147.90 Aligned_cols=203 Identities=14% Similarity=0.021 Sum_probs=135.0
Q ss_pred cchhhhHhHHHHH--HHHHHHHHHHhccC-----CCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHH
Q psy8160 18 RVPKLQQFGKTLN--IKAIKTFQQLLYVD-----PSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLE 90 (324)
Q Consensus 18 ~~~~l~~~~~~~~--~~A~~~~~~~l~~~-----p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~l 90 (324)
.+..+|.+....+ ++|+..|.+++++. ++.+....++..+|.++...|++++|+.+|++++
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al------------ 112 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL------------ 112 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHH------------
Confidence 3344444444333 77777777777663 3334455567777777777777777777776444
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc------CCCCCchhhHHHH
Q psy8160 91 GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE------DDLPVHLKADICR 164 (324)
Q Consensus 91 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~~~~ 164 (324)
..+++.. .+.......++..+|.++...|++++|+.+|++++.. ...|.. ..++.
T Consensus 113 --------------~~~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~ 173 (283)
T 3edt_B 113 --------------EIREKVL---GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV--AKTKN 173 (283)
T ss_dssp --------------HHHHHHH---CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH--HHHHH
T ss_pred --------------HHHHHHc---CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH--HHHHH
Confidence 1111111 1112233578899999999999999999999999987 111333 56899
Q ss_pred HHHHHHHhhhhhcccchhHHHHHHHHHHHhhh---------CCccHHHHHHHHHHHHHcCC------HHHHHHHHHHHHc
Q psy8160 165 QLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA---------DPKSGQSLYLLGRCFAAVGK------VHDAFLAYRNSVE 229 (324)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---------~~~~~~~~~~lg~~~~~~~~------~~~A~~~~~~al~ 229 (324)
.+|.++.. .|++++|+.+++++++. .+.....|..++..+...+. +..+...++....
T Consensus 174 ~la~~~~~-------~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 174 NLASCYLK-------QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHH-------HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHH-------cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 99999977 45999999999999987 34445677777777766544 4455555555555
Q ss_pred cCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 230 KSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 230 ~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
..|..+.++..+|.+|...|+ +++|+..|
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~-~~~A~~~~ 275 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGK-LEAAHTLE 275 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 566777889999999999999 99998876
No 89
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=5.2e-18 Score=154.23 Aligned_cols=222 Identities=6% Similarity=0.020 Sum_probs=181.8
Q ss_pred HHHHHHHHHhccCCCcccchHHHHHHHHHHHH-------hccHH-------HHHHHHHHHh--cCCCCchhhHHHHHHHH
Q psy8160 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKV-------NNEYD-------SALKHLTLCL--IDASPCTFTKLEGLMFK 95 (324)
Q Consensus 32 ~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~-------~~~~~-------~A~~~~~~al--~~~~~~~~~~~la~~~~ 95 (324)
.++..|++++..+|. .+++|+.+|..+.. .|+++ +|...|++++ ..|++..++..++.++.
T Consensus 256 ~a~~~y~~al~~~p~---~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~ 332 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGH---HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 332 (530)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 678899999999986 45689999999886 68877 9999999999 47999999999999999
Q ss_pred hcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhh
Q psy8160 96 VNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDT 175 (324)
Q Consensus 96 ~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~ 175 (324)
..|++++|...|++++...|... ..+|..+|.++...|++++|+..|++++... |.... .+...+++.+. .
T Consensus 333 ~~g~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~--~~~~~a~~~~~--~ 403 (530)
T 2ooe_A 333 SRMKYEKVHSIYNRLLAIEDIDP---TLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHH--VYVTAALMEYY--C 403 (530)
T ss_dssp HTTCHHHHHHHHHHHHHSSSSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTH--HHHHHHHHHHH--H
T ss_pred hcCCHHHHHHHHHHHhCccccCc---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchH--HHHHHHHHHHH--H
Confidence 99999999999999998766542 2589999999999999999999999999887 65533 55555555322 1
Q ss_pred hcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH----HHHHhHHHHhhcCCC
Q psy8160 176 LGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNAD----TWCSIGNKDFSNNSN 251 (324)
Q Consensus 176 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~~~~ 251 (324)
.|++++|...|+++++.+|+++.+|..+|..+...|++++|...|++++...|.++. +|...+......|+
T Consensus 404 ----~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~- 478 (530)
T 2ooe_A 404 ----SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD- 478 (530)
T ss_dssp ----TCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC-
T ss_pred ----cCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC-
Confidence 348999999999999999999999999999999999999999999999998876654 66665555555555
Q ss_pred HHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChh
Q psy8160 252 REDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCK 295 (324)
Q Consensus 252 ~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (324)
.+. +..++.++++..|+++
T Consensus 479 -----------------------~~~--~~~~~~r~~~~~p~~~ 497 (530)
T 2ooe_A 479 -----------------------LAS--ILKVEKRRFTAFREEY 497 (530)
T ss_dssp -----------------------HHH--HHHHHHHHHHHTHHHH
T ss_pred -----------------------HHH--HHHHHHHHHHHCchhc
Confidence 455 6666666666666533
No 90
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.81 E-value=1.3e-17 Score=144.69 Aligned_cols=260 Identities=13% Similarity=-0.004 Sum_probs=200.3
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCch-----hhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcc--cHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCT-----FTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTF--TKL 122 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~-----~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~--~~~ 122 (324)
.+++..+|.++...|++++|+..+++++ ..|.... +...+|.++...|++++|+..+++++...+.... ...
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL 93 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 4577888999999999999999999999 6665543 4556899999999999999999999876544332 334
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC---CC-chhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDL---PV-HLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP 198 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~---~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 198 (324)
.++..+|.++...|++++|+..+++++..... +. .....++..+|.++.. .|++++|+.++++++...|
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~~~A~~~~~~al~~~~ 166 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA-------WARLDEAEASARSGIEVLS 166 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHhh
Confidence 56788999999999999999999999976411 11 1225577889999876 5599999999999998876
Q ss_pred c-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC--CCHHHHH-----HhHHHHhhcCCCHHHHHHHH-------
Q psy8160 199 K-----SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSE--GNADTWC-----SIGNKDFSNNSNREDYHQAL------- 259 (324)
Q Consensus 199 ~-----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~-----~lg~~~~~~~~~~~~A~~~~------- 259 (324)
. ...++..+|.++...|++++|...+++++.+.+ ..+..|. .++.++...|+ +++|...+
T Consensus 167 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~a~~~~ 245 (373)
T 1hz4_A 167 SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD-KAAAANWLRHTAKPE 245 (373)
T ss_dssp TSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHSCCCC
T ss_pred ccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCC-HHHHHHHHHhCCCCC
Confidence 4 246788999999999999999999999987633 2322232 34456889999 99999988
Q ss_pred --------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChh------hhhhchhhhccCChhhHHHHHHHHhh
Q psy8160 260 --------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCK------HINNNKDFSNNSNREDYHQALNKYRD 321 (324)
Q Consensus 260 --------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~~a~~~~~~ 321 (324)
..+..+|.++...|++++ |+..+++++...+... .+...++.+ ....|++.+|...++.
T Consensus 246 ~~~~~~~~~~~~~la~~~~~~g~~~~--A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~l~~ 318 (373)
T 1hz4_A 246 FANNHFLQGQWRNIARAQILLGEFEP--AEIVLEELNENARSLRLMSDLNRNLLLLNQL-YWQAGRKSDAQRVLLD 318 (373)
T ss_dssp CTTCGGGHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHHTCHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHHHcCCHHH--HHHHHHHHHHHHHhCcchhhHHHHHHHHHHH-HHHhCCHHHHHHHHHH
Confidence 256789999999999999 9999999988755422 133333322 2345677777766654
No 91
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.80 E-value=1.8e-18 Score=126.20 Aligned_cols=113 Identities=17% Similarity=0.122 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG 201 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 201 (324)
++.+..+|..++..|++++|+..|++++..+ |.+ +.++..+|.++.. .|++++|+..++++++++|.++
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~~~~-------~~~~~~A~~~~~~al~~~p~~~ 81 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PEN--AILYSNRAACLTK-------LMEFQRALDDCDTCIRLDSKFI 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC--HHHHHHHhhHHHh-------hccHHHHHHHHHHHHHhhhhhh
Confidence 4778899999999999999999999999999 888 5599999999977 5599999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHH
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 245 (324)
.+|+.+|.++..+|++++|+..|+++++++|++++++..++.|+
T Consensus 82 ~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 82 KGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999998874
No 92
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.80 E-value=1.1e-18 Score=135.12 Aligned_cols=160 Identities=11% Similarity=0.025 Sum_probs=103.1
Q ss_pred chhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHH
Q psy8160 84 CTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADIC 163 (324)
Q Consensus 84 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 163 (324)
......+|..+...|++++|+..|++++...|.+. .+++.+|.++...|++++|+..|++++... | +. ...
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p-~~--~~~ 76 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRG----DVKLAKADCLLETKQFELAQELLATIPLEY--Q-DN--SYK 76 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSH----HHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--C-CH--HHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--C-Ch--HHH
Confidence 33344444455555555555555555555555544 667777777777777777777777777766 5 32 233
Q ss_pred HHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC--HHHHHHh
Q psy8160 164 RQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN--ADTWCSI 241 (324)
Q Consensus 164 ~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l 241 (324)
...+.+.... .....+|+..++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+. +.++..+
T Consensus 77 ~~~~~~~~~~------~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l 150 (176)
T 2r5s_A 77 SLIAKLELHQ------QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTF 150 (176)
T ss_dssp HHHHHHHHHH------HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHH
T ss_pred HHHHHHHHHh------hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHH
Confidence 3333332210 0122346788888888888888888888888888888888888888888888765 4577777
Q ss_pred HHHHhhcCCCHHHHHHHH
Q psy8160 242 GNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 242 g~~~~~~~~~~~~A~~~~ 259 (324)
|.++...|+ .++|+..|
T Consensus 151 ~~~~~~~g~-~~~A~~~y 167 (176)
T 2r5s_A 151 MDILSALGQ-GNAIASKY 167 (176)
T ss_dssp HHHHHHHCS-SCHHHHHH
T ss_pred HHHHHHhCC-CCcHHHHH
Confidence 777777777 55555554
No 93
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.79 E-value=2.1e-18 Score=133.58 Aligned_cols=163 Identities=16% Similarity=0.113 Sum_probs=141.6
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIA 129 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la 129 (324)
.+.++.+|..+...|++++|+..|++++ .+|++..++..+|.++...|++++|+..+++++...| +. .....++
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~----~~~~~~~ 80 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DN----SYKSLIA 80 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CH----HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-Ch----HHHHHHH
Confidence 4568999999999999999999999999 9999999999999999999999999999999998887 43 3344444
Q ss_pred HHHH-HhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc--HHHHHH
Q psy8160 130 HLHE-VQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS--GQSLYL 206 (324)
Q Consensus 130 ~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~ 206 (324)
.+.. ..++...|+..+++++..+ |++ ..+++.+|.++.. .|++++|+..|+++++.+|.. +.++..
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~--P~~--~~~~~~la~~~~~-------~g~~~~A~~~~~~~l~~~p~~~~~~a~~~ 149 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAAN--PDN--FELACELAVQYNQ-------VGRDEEALELLWNILKVNLGAQDGEVKKT 149 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHS--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHTTCTTTTTTHHHHH
T ss_pred HHHHHhhcccchHHHHHHHHHHhC--CCC--HHHHHHHHHHHHH-------cccHHHHHHHHHHHHHhCcccChHHHHHH
Confidence 4432 3344556899999999999 988 4599999999977 559999999999999999875 569999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHc
Q psy8160 207 LGRCFAAVGKVHDAFLAYRNSVE 229 (324)
Q Consensus 207 lg~~~~~~~~~~~A~~~~~~al~ 229 (324)
+|.++...|+.++|+..|++++.
T Consensus 150 l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 150 FMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcHHHHHHHHHH
Confidence 99999999999999999999875
No 94
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.79 E-value=5.5e-17 Score=137.01 Aligned_cols=233 Identities=12% Similarity=0.086 Sum_probs=190.6
Q ss_pred HHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcc-cHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Q psy8160 56 RLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNN-EYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHE 133 (324)
Q Consensus 56 ~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~ 133 (324)
.+..+....+..++|++.+.+++ .+|.+..++...+.++...| .+++++..+++++..+|.+. .+|...+.++.
T Consensus 59 ~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny----~aW~hR~wlL~ 134 (349)
T 3q7a_A 59 YFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSY----QVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCH----HHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHH
Confidence 33334444555678999999999 99999999999999999988 59999999999999999887 89999999999
Q ss_pred Hh-h-cHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcc-cchhHHHHHHHHHHHhhhCCccHHHHHHHHHH
Q psy8160 134 VQ-R-KYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGE-KSHRETLAIHCLQKSIEADPKSGQSLYLLGRC 210 (324)
Q Consensus 134 ~~-~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~ 210 (324)
.. + +++++++.+.+++..+ |.+.. +|...+++......... ......+++.++.++++.+|.+..+|...+.+
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d--pkNy~--AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~l 210 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD--PKNYH--TWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYL 210 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC--TTCHH--HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHHhC--CCCHH--HHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 88 7 8999999999999999 98855 99999999866321110 01123489999999999999999999999999
Q ss_pred HHHcCC-------HHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCH-------------------HHHHHHH-----
Q psy8160 211 FAAVGK-------VHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNR-------------------EDYHQAL----- 259 (324)
Q Consensus 211 ~~~~~~-------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~-------------------~~A~~~~----- 259 (324)
....++ ++++++++.+++.++|++..+|..+..++...|. . ...+..+
T Consensus 211 L~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (349)
T 3q7a_A 211 RVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL-PLVPILPAILPYTASKLNPDIETVEAFGFPMP 289 (349)
T ss_dssp HTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-CSGGGHHHHGGGTC--------------CCCC
T ss_pred HHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC-CcccccccccccccccccccchhHHHHHHHHH
Confidence 999987 7999999999999999999999999999888776 4 1223333
Q ss_pred -------------HHHHhhHHHHHHcCCCCcchHHHHHHHhh-hcCCChhhhhh
Q psy8160 260 -------------NKYRDLGDFLVINNIPTSNNNRQCYNSYS-TSIASCKHINN 299 (324)
Q Consensus 260 -------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~ 299 (324)
.++.-|+.+|...|+.++ |+++|+... +.||--...+.
T Consensus 290 ~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~--a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 290 SDPLPEDTPLPVPLALEYLADSFIEQNRVDD--AAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp C-CCCSSCCSCCHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHTTCGGGHHHHH
T ss_pred hcccccccCCCcHHHHHHHHHHHHhcCCHHH--HHHHHHHHHhhhChHHHHHHH
Confidence 567789999999999999 999999986 77886554443
No 95
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.79 E-value=8e-19 Score=128.14 Aligned_cols=109 Identities=13% Similarity=0.036 Sum_probs=100.1
Q ss_pred HHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------H
Q psy8160 192 KSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-----------N 260 (324)
Q Consensus 192 ~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~ 260 (324)
++..++|+.++.+..+|.+++..|++++|+..|+++++++|.++.+|.++|.++..+|+ +++|+..| .
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~p~~~~ 82 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLME-FQRALDDCDTCIRLDSKFIK 82 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhcc-HHHHHHHHHHHHHhhhhhhH
Confidence 34468899999999999999999999999999999999999999999999999999999 99999998 8
Q ss_pred HHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhh
Q psy8160 261 KYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDF 303 (324)
Q Consensus 261 ~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 303 (324)
+|+++|.+|...|++++ |+..|+++++++|+++.++.++..
T Consensus 83 a~~~lg~~~~~~~~~~~--A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 83 GYIRKAACLVAMREWSK--AQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHHHHHHTTCHHH--HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHH--HHHHHHHHHHHCcCCHHHHHHHHH
Confidence 89999999999999999 999999999999999999887764
No 96
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.78 E-value=1.5e-16 Score=133.82 Aligned_cols=237 Identities=8% Similarity=-0.013 Sum_probs=191.3
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhcc----------HHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcc-
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNE----------YDSALKHLTLCL-IDASPCTFTKLEGLMFKVNN- 98 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~----------~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~- 98 (324)
++|+..+.+++.++|++ ..++...+.+....+. +++++.++..++ .+|.+..++...+.++...+
T Consensus 47 ~eaL~~t~~~L~~nP~~---ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~ 123 (331)
T 3dss_A 47 ESVLELTSQILGANPDF---ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 123 (331)
T ss_dssp HHHHHHHHHHHTTCTTC---HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHCchh---HHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCc
Confidence 88999999999999874 5688888888877765 789999999999 99999999999999999988
Q ss_pred -cHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhc-HHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhh
Q psy8160 99 -EYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRK-YKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTL 176 (324)
Q Consensus 99 -~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~ 176 (324)
.+++++.++.+++..+|.+. .+|...+.+....|. ++++++++.+++..+ |.+.. +|..++.+.......
T Consensus 124 ~~~~~EL~~~~k~l~~dprNy----~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~N~S--AW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 124 PNWARELELCARFLEADERNF----HCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYS--SWHYRSCLLPQLHPQ 195 (331)
T ss_dssp CCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SCCHH--HHHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CCCHH--HHHHHHHHHHHhhhc
Confidence 49999999999999999887 899999999999998 599999999999999 88844 999999988653110
Q ss_pred -------cccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHccCCCCHHHH
Q psy8160 177 -------GEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAV-----------GKVHDAFLAYRNSVEKSEGNADTW 238 (324)
Q Consensus 177 -------~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~ 238 (324)
+...+.+++++.++.+++..+|++..+|+.+..++... +.++++++.+.+++++.|++...+
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l 275 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCL 275 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHH
Confidence 00125799999999999999999999998666555554 457899999999999999985443
Q ss_pred HHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhch
Q psy8160 239 CSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNK 301 (324)
Q Consensus 239 ~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 301 (324)
..++.+...... .+..++ ....+.+.+++||-...-...+
T Consensus 276 ~~~~~~~~~~~~---------------------~~~~~~--~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 276 LTIILLMRALDP---------------------LLYEKE--TLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp HHHHHHHHHHCT---------------------TTTHHH--HHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhhcc---------------------cccHHH--HHHHHHHHHHhCcchhhHHHHH
Confidence 333322222111 233456 8899999999999765544433
No 97
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.78 E-value=2.8e-19 Score=134.41 Aligned_cols=118 Identities=9% Similarity=0.024 Sum_probs=92.4
Q ss_pred HHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHH
Q psy8160 141 AKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDA 220 (324)
Q Consensus 141 A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A 220 (324)
+-..+++++..+ |++ ..+++.+|.+++. .|++++|+..|++++..+|.++.+|+.+|.++...|++++|
T Consensus 21 ~~~~l~~al~l~--p~~--~~~~~~lg~~~~~-------~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A 89 (151)
T 3gyz_A 21 SGATLKDINAIP--DDM--MDDIYSYAYDFYN-------KGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQA 89 (151)
T ss_dssp TSCCTGGGCCSC--HHH--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCHHHHhCCC--HHH--HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHH
Confidence 334566667777 766 4488888888866 45888888888888888888888888888888888888888
Q ss_pred HHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChh
Q psy8160 221 FLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCK 295 (324)
Q Consensus 221 ~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (324)
+..|++++.++|+++.+|+++|.+|...|+ +++ |+.+|++++++.|+.+
T Consensus 90 i~~~~~al~l~P~~~~~~~~lg~~~~~lg~------------------------~~e--A~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 90 ADLYAVAFALGKNDYTPVFHTGQCQLRLKA------------------------PLK--AKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHSSSCCHHHHHHHHHHHHTTC------------------------HHH--HHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhhCCCCcHHHHHHHHHHHHcCC------------------------HHH--HHHHHHHHHHhCCCHH
Confidence 888888888888888888777777777777 556 8888888888888766
No 98
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.78 E-value=5.2e-18 Score=155.51 Aligned_cols=163 Identities=11% Similarity=0.004 Sum_probs=98.0
Q ss_pred ccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHH
Q psy8160 65 NEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKD 143 (324)
Q Consensus 65 ~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 143 (324)
|++++|+..|++++ .+|.+..++..+|.++...|++++|++.|++++...|... .++..+|.++...|++++|+.
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP----EAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCH----HHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCCHHHHHH
Confidence 55666666666666 6666666666666666666666666666666666555543 566677777777777777777
Q ss_pred HHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHc---CCHHHH
Q psy8160 144 SYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAV---GKVHDA 220 (324)
Q Consensus 144 ~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~---~~~~~A 220 (324)
.|+++++.+ |++ ..++..+|.++.. .+++++|+..|+++++.+|.++.++..+|.++... |++++|
T Consensus 79 ~~~~al~~~--p~~--~~~~~~la~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A 147 (568)
T 2vsy_A 79 LLQQASDAA--PEH--PGIALWLGHALED-------AGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVL 147 (568)
T ss_dssp HHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred HHHHHHhcC--CCC--HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHH
Confidence 777777766 665 3466777777655 34677777777777777777777777777777777 777777
Q ss_pred HHHHHHHHccCCCCHHHHHHhH
Q psy8160 221 FLAYRNSVEKSEGNADTWCSIG 242 (324)
Q Consensus 221 ~~~~~~al~~~p~~~~~~~~lg 242 (324)
+..++++++.+|.+...+..++
T Consensus 148 ~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 148 SAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHHHHHHHHTCCCSCHHHHTT
T ss_pred HHHHHHHHhcCCcccChHHHhC
Confidence 7777777777777666665555
No 99
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.77 E-value=2.6e-17 Score=139.06 Aligned_cols=196 Identities=14% Similarity=-0.004 Sum_probs=155.0
Q ss_pred HHHHHHHHHHhccC--------CCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCC------chhhHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVD--------PSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASP------CTFTKLEGLMFK 95 (324)
Q Consensus 31 ~~A~~~~~~~l~~~--------p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~------~~~~~~la~~~~ 95 (324)
++|.+.++++.+.. +++..+...+...|.+|...|++++|+.+|.+++ +.+.. ...+..+|.+|.
T Consensus 8 ~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~ 87 (307)
T 2ifu_A 8 SEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLK 87 (307)
T ss_dssp HHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 56777777666533 3434445677888999999999999999999999 65432 345666899999
Q ss_pred hcccHHHHHHHHHHHHHhcCCCc--ccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCc--hhhHHHHHHHHHHH
Q psy8160 96 VNNEYDSALKHLTLCLIDASPCT--FTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVH--LKADICRQLGWMYH 171 (324)
Q Consensus 96 ~~~~~~~A~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~l~~~~~ 171 (324)
..|++++|+.+|++++...+... .....++.++|.+|.. |++++|+.+|++++.......+ ..+.++..+|.++.
T Consensus 88 ~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~ 166 (307)
T 2ifu_A 88 DLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLV 166 (307)
T ss_dssp HTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 99999999999999987743322 2345788999999998 9999999999999987621111 12568899999997
Q ss_pred hhhhhcccchhHHHHHHHHHHHhhhCCcc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q psy8160 172 CIDTLGEKSHRETLAIHCLQKSIEADPKS------GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA 235 (324)
Q Consensus 172 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 235 (324)
. .+++++|+.+|++++.+.|.+ ..++..+|.++...|++++|+..|++++ ++|...
T Consensus 167 ~-------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 167 R-------QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp H-------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred H-------cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence 7 559999999999999876544 3578889999999999999999999999 999764
No 100
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.77 E-value=1.7e-17 Score=138.84 Aligned_cols=163 Identities=11% Similarity=0.037 Sum_probs=83.4
Q ss_pred CCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhh
Q psy8160 81 ASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKA 160 (324)
Q Consensus 81 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 160 (324)
|.+......+|..+...|++++|+..|++++...|.+. .+++.+|.++...|++++|+..+++++..+ |+..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~-- 185 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNG----EIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTR-- 185 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHH--
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch----hHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchH--
Confidence 33334444444444444444444444444444444443 455555555555555555555555555555 4321
Q ss_pred HHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC--HHHH
Q psy8160 161 DICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN--ADTW 238 (324)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~ 238 (324)
......+..+.. .++.++|+..+++++..+|+++.+++.+|.++...|++++|+..|++++..+|++ +.++
T Consensus 186 ~~~~~~~~~l~~-------~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 186 YQGLVAQIELLX-------QAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp HHHHHHHHHHHH-------HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred HHHHHHHHHHHh-------hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 122222322222 1244445555555555555555555555555555555555555555555555555 5555
Q ss_pred HHhHHHHhhcCCCHHHHHHHH
Q psy8160 239 CSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 239 ~~lg~~~~~~~~~~~~A~~~~ 259 (324)
..+|.++...|+ .++|+..|
T Consensus 259 ~~l~~~~~~~g~-~~~a~~~~ 278 (287)
T 3qou_A 259 XTFQEILAALGT-GDALASXY 278 (287)
T ss_dssp HHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHHHHHHHcCC-CCcHHHHH
Confidence 555555555555 55555554
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.76 E-value=1.8e-17 Score=138.63 Aligned_cols=162 Identities=17% Similarity=0.129 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH 130 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~ 130 (324)
+.++.+|..+...|++++|+..|++++ .+|++..++..+|.++...|++++|+..+++++...|... ......+.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~----~~~~~~~~ 193 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR----YQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH----HHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH----HHHHHHHH
Confidence 344445555555555555555555555 4555555555555555555555555555544444443211 22333333
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc--HHHHHHHH
Q psy8160 131 LHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS--GQSLYLLG 208 (324)
Q Consensus 131 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~lg 208 (324)
.+...++.+.|+..|++++..+ |++ ..+++.+|.++.. .|++++|+..|+++++.+|.+ ..++..+|
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~--P~~--~~~~~~la~~l~~-------~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~ 262 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN--PED--AALATQLALQLHQ-------VGRNEEALELLFGHLRXDLTAADGQTRXTFQ 262 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTGGGGHHHHHHH
T ss_pred HHHhhcccCccHHHHHHHHhcC--Ccc--HHHHHHHHHHHHH-------cccHHHHHHHHHHHHhcccccccchHHHHHH
Confidence 3444444444555555555444 444 2244444544433 224555555555555554444 44445555
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q psy8160 209 RCFAAVGKVHDAFLAYRNSV 228 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al 228 (324)
.++...|+.++|...|++++
T Consensus 263 ~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 263 EILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHcCCCCcHHHHHHHHH
Confidence 55555555555555554443
No 102
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.76 E-value=7.9e-17 Score=128.62 Aligned_cols=193 Identities=12% Similarity=0.045 Sum_probs=157.0
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcc----cHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNN----EYDSALKH 106 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~----~~~~A~~~ 106 (324)
.+|+++|+++.+.. ++.+++.+|.+|...+++++|+.+|++++ ++.+..+...+|.+|.. + ++++|+.+
T Consensus 3 ~eA~~~~~~aa~~g-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~-~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG-----DRRAQYYLADTWVSSGDYQKAEYWAQKAA-AQGDGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HTTCHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35788999998764 46689999999999999999999999998 22567888899999998 6 89999999
Q ss_pred HHHHHHhcCCCcccHHHHHHHHHHHHHH----hhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchh
Q psy8160 107 LTLCLIDASPCTFTKLEVRFHIAHLHEV----QRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHR 182 (324)
Q Consensus 107 ~~~~l~~~~~~~~~~~~~~~~la~~~~~----~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 182 (324)
|+++.... . +.+++.+|.+|.. .+++++|+.+|++++... |....+.+++.+|.+|..... ..++
T Consensus 76 ~~~A~~~g--~----~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g---~~~d 144 (212)
T 3rjv_A 76 AEKAVEAG--S----KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVH---GPED 144 (212)
T ss_dssp HHHHHHTT--C----HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSS---SSCC
T ss_pred HHHHHHCC--C----HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCC---CCCC
Confidence 99997542 2 3789999999987 789999999999999887 632125599999999965211 1348
Q ss_pred HHHHHHHHHHHhhhCCccHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHccCCCCHHHHHHhHHH
Q psy8160 183 ETLAIHCLQKSIEADPKSGQSLYLLGRCFAAV-G-----KVHDAFLAYRNSVEKSEGNADTWCSIGNK 244 (324)
Q Consensus 183 ~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~-~-----~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 244 (324)
+++|+.+|+++++. |.++.+++.||.+|... | ++++|+.+|+++.+.. ++.+...++.+
T Consensus 145 ~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l~~l 209 (212)
T 3rjv_A 145 DVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEFDRI 209 (212)
T ss_dssp HHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHh
Confidence 99999999999988 67788999999999864 3 8999999999998875 45555555543
No 103
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.76 E-value=4.8e-18 Score=143.62 Aligned_cols=203 Identities=10% Similarity=-0.021 Sum_probs=93.3
Q ss_pred hccHHHHHHHHHHHh-cCCCCch-----------hhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCc--ccHHHHHHHHH
Q psy8160 64 NNEYDSALKHLTLCL-IDASPCT-----------FTKLEGLMFKVNNEYDSALKHLTLCLIDASPCT--FTKLEVRFHIA 129 (324)
Q Consensus 64 ~~~~~~A~~~~~~al-~~~~~~~-----------~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~--~~~~~~~~~la 129 (324)
.|++++|.++++++. ..+.... .+...+.+|...|++++|+.+|++++...+... .....++.++|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 466677777777666 3332100 011123444444555555555555444322111 11223444445
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCCCCCchh--hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc------H
Q psy8160 130 HLHEVQRKYKTAKDSYEQLLKEDDLPVHLK--ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS------G 201 (324)
Q Consensus 130 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------~ 201 (324)
.++..+|++++|+.+|++++.+.....+.. +.++..+|.+|. . | ++++|+.+|++++++.|.. .
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~---~-g----~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME---P-L----DLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT---T-T----CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---c-C----CHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 555555555555555555555442222222 233444444441 1 2 4555555555554443322 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHH
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNR 281 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~ 281 (324)
.++..+|.++..+|++++|+..|++++.+.|.+...+ ..+ .++..+|.++...|++++ |+
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------~~~----~~~~~~g~~~~~~g~~~~--A~ 215 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP--------------TCY----KKCIAQVLVQLHRADYVA--AQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH--------------HHH----HHHHHHHHHHHHTTCHHH--HH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChh--------------HHH----HHHHHHHHHHHHcCCHHH--HH
Confidence 3444455555555555555555555544433221000 000 245556666666666777 77
Q ss_pred HHHHHhhhcCCChh
Q psy8160 282 QCYNSYSTSIASCK 295 (324)
Q Consensus 282 ~~~~~al~~~p~~~ 295 (324)
.+|++++ ++|+.+
T Consensus 216 ~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 216 KCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHHHT-TSTTST
T ss_pred HHHHHHh-CCCCCC
Confidence 7777777 666544
No 104
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.75 E-value=1.5e-19 Score=154.75 Aligned_cols=180 Identities=12% Similarity=0.033 Sum_probs=143.4
Q ss_pred HhccHHHHHHHHHH----Hh-cCCCCchhhHHHHHHH------------HhcccHHHHHHHHHHHHHhcCCCcccHHHHH
Q psy8160 63 VNNEYDSALKHLTL----CL-IDASPCTFTKLEGLMF------------KVNNEYDSALKHLTLCLIDASPCTFTKLEVR 125 (324)
Q Consensus 63 ~~~~~~~A~~~~~~----al-~~~~~~~~~~~la~~~------------~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~ 125 (324)
..+.+++|+..++. ++ ++|.... ...|... ...+++++|+..+++++...|.. ..++
T Consensus 77 ~~~~~e~al~~~~~Ge~~~l~i~p~~ay--g~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~----a~~~ 150 (336)
T 1p5q_A 77 LPYGLERAIQRMEKGEHSIVYLKPSYAF--GSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQ----STIV 150 (336)
T ss_dssp CCHHHHHHHTTCCTTCEEEEEECTTTTT--TTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHH----HHHH
T ss_pred cchHHHHHHhcCCCCCeEEEEECCcccc--CcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHH----HHHH
Confidence 34566777777766 66 6666522 2222111 13456666666666666554433 3788
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCch-------------hhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHH
Q psy8160 126 FHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHL-------------KADICRQLGWMYHCIDTLGEKSHRETLAIHCLQK 192 (324)
Q Consensus 126 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~ 192 (324)
..+|.++...|++++|+..|++++... |... ...++.++|.++.. .+++++|+.+|++
T Consensus 151 ~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-------~g~~~~A~~~~~~ 221 (336)
T 1p5q_A 151 KERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLK-------LQAFSAAIESCNK 221 (336)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHH-------cCCHHHHHHHHHH
Confidence 899999999999999999999999988 6652 13599999999977 5599999999999
Q ss_pred HhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHH
Q psy8160 193 SIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQA 258 (324)
Q Consensus 193 al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~ 258 (324)
+++++|.++.+++.+|.++..+|++++|+..|+++++++|+++.++..+|.++...|+ +++|...
T Consensus 222 al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~-~~~a~~~ 286 (336)
T 1p5q_A 222 ALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRR-QLAREKK 286 (336)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 9998543
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.75 E-value=2e-17 Score=151.71 Aligned_cols=147 Identities=14% Similarity=0.097 Sum_probs=119.0
Q ss_pred cccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhh
Q psy8160 97 NNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTL 176 (324)
Q Consensus 97 ~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~ 176 (324)
.|++++|+..|++++...|... .+++.+|.++...|++++|+..|+++++.+ |++ ..++..+|.++..
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~lg~~~~~---- 69 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDF----VAWLMLADAELGMGDTTAGEMAVQRGLALH--PGH--PEAVARLGRVRWT---- 69 (568)
T ss_dssp -------------------CCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTC--HHHHHHHHHHHHH----
T ss_pred CccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC--HHHHHHHHHHHHH----
Confidence 5789999999999998888765 889999999999999999999999999999 887 5599999999977
Q ss_pred cccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhc---CCCHH
Q psy8160 177 GEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSN---NSNRE 253 (324)
Q Consensus 177 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---~~~~~ 253 (324)
.+++++|+.+++++++.+|+++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++... |+ ++
T Consensus 70 ---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~-~~ 145 (568)
T 2vsy_A 70 ---QQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA-LD 145 (568)
T ss_dssp ---TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT-HH
T ss_pred ---CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc-HH
Confidence 559999999999999999999999999999999999999999999999999999999999999999999 88 77
Q ss_pred HHHHHH
Q psy8160 254 DYHQAL 259 (324)
Q Consensus 254 ~A~~~~ 259 (324)
+|+..|
T Consensus 146 ~A~~~~ 151 (568)
T 2vsy_A 146 VLSAQV 151 (568)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777766
No 106
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.75 E-value=2.9e-18 Score=128.88 Aligned_cols=103 Identities=12% Similarity=0.089 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG 201 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 201 (324)
.++++.+|.++...|++++|+..|++++..+ |.+ +.+|..+|.++.. .+++++|+.+|+++++++|+++
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~--~~~~~~lg~~~~~-------~g~~~~Ai~~~~~al~l~P~~~ 104 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYN--VDYIMGLAAIYQI-------KEQFQQAADLYAVAFALGKNDY 104 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC--HHHHHHHHHHHHH-------HccHHHHHHHHHHHHhhCCCCc
Confidence 3789999999999999999999999999999 888 5599999999977 5599999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA 235 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 235 (324)
.+|+.+|.++..+|++++|+..|++++++.|+.+
T Consensus 105 ~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 105 TPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999765
No 107
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.74 E-value=3.7e-16 Score=149.84 Aligned_cols=228 Identities=8% Similarity=0.006 Sum_probs=161.7
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH 130 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~ 130 (324)
+.+|+.+|..+...|++++|+..|.++ ++...+...+..+...|++++|+++|..+....++.. +...+|.
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~-----Idt~Laf 1175 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY-----VETELIF 1175 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccccc-----ccHHHHH
Confidence 346667777777777777777777643 5555566667777777777777777766665543322 1223666
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHH
Q psy8160 131 LHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRC 210 (324)
Q Consensus 131 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~ 210 (324)
+|.+++++++ ++.| +. . ++ ...+..+|..+.. .+++++|+.+|.++ ..|..+|.+
T Consensus 1176 aYAKl~rlee-le~f---I~-~--~n---~ad~~~iGd~le~-------eg~YeeA~~~Y~kA--------~ny~rLA~t 1230 (1630)
T 1xi4_A 1176 ALAKTNRLAE-LEEF---IN-G--PN---NAHIQQVGDRCYD-------EKMYDAAKLLYNNV--------SNFGRLAST 1230 (1630)
T ss_pred HHHhhcCHHH-HHHH---Hh-C--CC---HHHHHHHHHHHHh-------cCCHHHHHHHHHhh--------hHHHHHHHH
Confidence 6666666653 3333 11 1 22 1245567777755 45888888888885 478888899
Q ss_pred HHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-------HHHHhhHHHHHHcCCCCcchHHHH
Q psy8160 211 FAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-------NKYRDLGDFLVINNIPTSNNNRQC 283 (324)
Q Consensus 211 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-------~~~~~lg~~~~~~~~~~~~~A~~~ 283 (324)
+...|++++|++.+++| .++.+|...+.++...|+ +..|..+. +.+..++..|...|.+++ |+..
T Consensus 1231 LvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~E-f~LA~~cgl~Iiv~~deLeeli~yYe~~G~feE--AI~L 1302 (1630)
T 1xi4_A 1231 LVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKE-FRLAQMCGLHIVVHADELEELINYYQDRGYFEE--LITM 1302 (1630)
T ss_pred HHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhH-HHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHH--HHHH
Confidence 99999999999999888 567888888888888888 99888887 567789999999999999 9999
Q ss_pred HHHhhhcCCChhhhhhchhhhcc-CChhhHHHHHHHHh
Q psy8160 284 YNSYSTSIASCKHINNNKDFSNN-SNREDYHQALNKYR 320 (324)
Q Consensus 284 ~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~~a~~~~~ 320 (324)
+++++.++|.+..+...++.+.. ..-++.-+++..|-
T Consensus 1303 lE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1303 LEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred HHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999988877765533 33455555555443
No 108
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.74 E-value=2.6e-16 Score=132.34 Aligned_cols=209 Identities=11% Similarity=0.034 Sum_probs=174.4
Q ss_pred HHhccHH-HHHHHHHHHh-cCCCCchhhHHHHHHHHhccc----------HHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Q psy8160 62 KVNNEYD-SALKHLTLCL-IDASPCTFTKLEGLMFKVNNE----------YDSALKHLTLCLIDASPCTFTKLEVRFHIA 129 (324)
Q Consensus 62 ~~~~~~~-~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~l~~~~~~~~~~~~~~~~la 129 (324)
...|+++ +|+..+..++ .+|.+..++...+.++...+. +++++.+++.++..+|.+. .+|...+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny----~aW~hR~ 115 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY----GTWHHRC 115 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH----HHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCH----HHHHHHH
Confidence 3556665 7999999999 999999999999998887766 7899999999999999987 8999999
Q ss_pred HHHHHhhc--HHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchh-HHHHHHHHHHHhhhCCccHHHHHH
Q psy8160 130 HLHEVQRK--YKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHR-ETLAIHCLQKSIEADPKSGQSLYL 206 (324)
Q Consensus 130 ~~~~~~~~--~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~ 206 (324)
.+....++ +++++.++.+++..+ |.+.. +|...+++... .+. +++++.++.++++.+|.+..+|..
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~d--prNy~--AW~~R~~vl~~-------l~~~~~eel~~~~~~I~~~p~N~SAW~~ 184 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEAD--ERNFH--CWDYRRFVAAQ-------AAVAPAEELAFTDSLITRNFSNYSSWHY 184 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHC--TTCHH--HHHHHHHHHHH-------TTCCHHHHHHHHHHHHHHCSCCHHHHHH
T ss_pred HHHhccCcccHHHHHHHHHHHHHhC--CCCHH--HHHHHHHHHHH-------hCcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 99999984 899999999999999 98855 99999999865 225 689999999999999999999999
Q ss_pred HHHHHHHc--------------CCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhc-CCCHHHHHHHHHHHHhhHHHHHH
Q psy8160 207 LGRCFAAV--------------GKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSN-NSNREDYHQALNKYRDLGDFLVI 271 (324)
Q Consensus 207 lg~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-~~~~~~A~~~~~~~~~lg~~~~~ 271 (324)
++.+.... +.++++++++.+++..+|++..+|+.+..++... |. .. ++ -..
T Consensus 185 R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~-~~-----------~~--~~~ 250 (331)
T 3dss_A 185 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGR-CE-----------LS--VEK 250 (331)
T ss_dssp HHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCG-GG-----------CC--HHH
T ss_pred HHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCc-cc-----------cc--hHH
Confidence 99998887 5689999999999999999999997665555443 43 11 11 111
Q ss_pred cCCCCcchHHHHHHHhhhcCCChhhhhhch
Q psy8160 272 NNIPTSNNNRQCYNSYSTSIASCKHINNNK 301 (324)
Q Consensus 272 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 301 (324)
.+.+++ +++++.++++.+|++..+...+
T Consensus 251 ~~~l~~--el~~~~elle~~pd~~w~l~~~ 278 (331)
T 3dss_A 251 STVLQS--ELESCKELQELEPENKWCLLTI 278 (331)
T ss_dssp HHHHHH--HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHhhCcccchHHHHH
Confidence 234677 9999999999999987654443
No 109
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.73 E-value=3.5e-16 Score=124.82 Aligned_cols=162 Identities=12% Similarity=-0.014 Sum_probs=133.9
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhh----cHHHHHHH
Q psy8160 69 SALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQR----KYKTAKDS 144 (324)
Q Consensus 69 ~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~----~~~~A~~~ 144 (324)
+|+++|+++.. ..+..+...+|.++...+++++|+.+|++++... . +.+++.+|.+|.. + ++++|+.+
T Consensus 4 eA~~~~~~aa~-~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~----~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAE-AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--D----GDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHH-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--C----HHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHH-CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--C----HHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 57788888872 2677888899999999999999999999998653 2 3789999999988 6 89999999
Q ss_pred HHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC--ccHHHHHHHHHHHHH----cCCHH
Q psy8160 145 YEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP--KSGQSLYLLGRCFAA----VGKVH 218 (324)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~lg~~~~~----~~~~~ 218 (324)
|+++.+.. + +.+++.+|.+|..-.. ..+++++|+.+|+++++..| .++.+++.||.+|.. .++++
T Consensus 76 ~~~A~~~g----~--~~a~~~Lg~~y~~g~g---~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~ 146 (212)
T 3rjv_A 76 AEKAVEAG----S--KSGEIVLARVLVNRQA---GATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDV 146 (212)
T ss_dssp HHHHHHTT----C--HHHHHHHHHHHTCGGG---SSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHH
T ss_pred HHHHHHCC----C--HHHHHHHHHHHHcCCC---CccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHH
Confidence 99997643 3 4589999999954211 13489999999999999888 458999999999999 88999
Q ss_pred HHHHHHHHHHccCCCCHHHHHHhHHHHhhc
Q psy8160 219 DAFLAYRNSVEKSEGNADTWCSIGNKDFSN 248 (324)
Q Consensus 219 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 248 (324)
+|+.+|+++++. |.++.++++||.+|...
T Consensus 147 ~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g 175 (212)
T 3rjv_A 147 KASEYFKGSSSL-SRTGYAEYWAGMMFQQG 175 (212)
T ss_dssp HHHHHHHHHHHT-SCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHcC
Confidence 999999999988 67788888999888754
No 110
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=1.3e-17 Score=144.15 Aligned_cols=239 Identities=8% Similarity=-0.006 Sum_probs=114.1
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLC 110 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 110 (324)
++|.++++++ | .+++|..+|..+...|++++|++.|.++ .+...+...+..+...|++++|+++++.+
T Consensus 20 d~A~~fae~~----~----~~~vWs~La~A~l~~g~~~eAIdsfika----~D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 20 DRAYEFAERC----N----EPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhC----C----ChHHHHHHHHHHHHcCCHHHHHHHHHcC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 8888888887 2 1248999999999999999999999764 34446667788888899999999999988
Q ss_pred HHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHH
Q psy8160 111 LIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCL 190 (324)
Q Consensus 111 l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~ 190 (324)
.+..++ . .+...++.+|...|++.++.+.++. |+. .+|..+|..+.. .|.+++|..+|
T Consensus 88 rk~~~~-~----~i~~~Li~~Y~Klg~l~e~e~f~~~-------pn~---~a~~~IGd~~~~-------~g~yeeA~~~Y 145 (449)
T 1b89_A 88 RKKARE-S----YVETELIFALAKTNRLAELEEFING-------PNN---AHIQQVGDRCYD-------EKMYDAAKLLY 145 (449)
T ss_dssp --------------------------CHHHHTTTTTC-------C--------------------------CTTTHHHHH
T ss_pred HHhCcc-c----hhHHHHHHHHHHhCCHHHHHHHHcC-------CcH---HHHHHHHHHHHH-------cCCHHHHHHHH
Confidence 875333 2 5677889999999999998877632 432 399999999976 55999999999
Q ss_pred HHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-------HHHH
Q psy8160 191 QKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-------NKYR 263 (324)
Q Consensus 191 ~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-------~~~~ 263 (324)
.++ ..|..+|.++..+|++++|++.|+++ .++.+|...+.++...|+ ++.|..+. +-..
T Consensus 146 ~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~e-f~lA~~~~l~L~~~ad~l~ 211 (449)
T 1b89_A 146 NNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKE-FRLAQMCGLHIVVHADELE 211 (449)
T ss_dssp HHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTC-HHHHHHTTTTTTTCHHHHH
T ss_pred HHh--------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCc-HHHHHHHHHHHHhCHhhHH
Confidence 987 57899999999999999999999999 479999999999999999 99998877 4455
Q ss_pred hhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhcc-CChhhHHHHHHHH
Q psy8160 264 DLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNN-SNREDYHQALNKY 319 (324)
Q Consensus 264 ~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~~a~~~~ 319 (324)
.+..+|.+.|++++ |+..+++++.++|.+..+...++.+.. ..-++..+.++.|
T Consensus 212 ~lv~~Yek~G~~eE--ai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 212 ELINYYQDRGYFEE--LITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp HHHHHHHHTTCHHH--HHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHH--HHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 68889999999999 999999999999999988888876532 3446666666555
No 111
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.72 E-value=1.4e-15 Score=128.39 Aligned_cols=217 Identities=9% Similarity=-0.022 Sum_probs=181.5
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhc-cHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhc-c-cHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNN-EYDSALKHLTLCL-IDASPCTFTKLEGLMFKVN-N-EYDSALKH 106 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~-~-~~~~A~~~ 106 (324)
++|++.+.++|.++|+ ...++...+.+....+ ++++++..+..++ .+|.+..++...+.++... + ++++++++
T Consensus 71 e~AL~lt~~~L~~nP~---~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 71 ERALELTEIIVRMNPA---HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp HHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred HHHHHHHHHHHHhCch---hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 8899999999999987 4568999999999999 5999999999999 9999999999999999887 7 89999999
Q ss_pred HHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHH--------HHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcc
Q psy8160 107 LTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYK--------TAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGE 178 (324)
Q Consensus 107 ~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~--------~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 178 (324)
+.+++..+|.+. .+|...+.+....+.++ ++++.+++++..+ |.+.. +|...+.+.........
T Consensus 148 ~~k~L~~dpkNy----~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~N~S--AW~~R~~lL~~l~~~~~ 219 (349)
T 3q7a_A 148 IHGSLLPDPKNY----HTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GRNNS--AWGWRWYLRVSRPGAET 219 (349)
T ss_dssp HHHHTSSCTTCH----HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TTCHH--HHHHHHHHHTTSTTCCC
T ss_pred HHHHHHhCCCCH----HHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CCCHH--HHHHHHHHHHhcccccc
Confidence 999999988886 89999999999999888 9999999999999 88854 99999999866321100
Q ss_pred cchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHccC------C
Q psy8160 179 KSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKV--------------------HDAFLAYRNSVEKS------E 232 (324)
Q Consensus 179 ~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~--------------------~~A~~~~~~al~~~------p 232 (324)
....+++++.++++++..+|.+..+|+.+..++...|+. .+-...+...+... +
T Consensus 220 ~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 220 SSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL 299 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence 122478999999999999999999999988888887764 23333333333332 5
Q ss_pred CCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 233 GNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 233 ~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.++-++.-++.+|...|+ .++|+++|
T Consensus 300 ~s~~al~~l~d~~~~~~~-~~~a~~~~ 325 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNR-VDDAAKVF 325 (349)
T ss_dssp CCHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCC-HHHHHHHH
Confidence 678899999999999999 99999887
No 112
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.72 E-value=9.8e-17 Score=131.30 Aligned_cols=213 Identities=11% Similarity=0.017 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHH-------HHHHHhcccHHHHHHHHHHHHHhcCCCcc-----
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLE-------GLMFKVNNEYDSALKHLTLCLIDASPCTF----- 119 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~l-------a~~~~~~~~~~~A~~~~~~~l~~~~~~~~----- 119 (324)
.+|..|.-+ ..+++..|...|.+++ .+|+.+.+|..+ +.++...+++.+++..+++.+...|....
T Consensus 9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~ 87 (282)
T 4f3v_A 9 SLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAI 87 (282)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEEC
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhcc
Confidence 356666665 5788888888888888 888888888887 78888888888888888888775443211
Q ss_pred ------------cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHH
Q psy8160 120 ------------TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAI 187 (324)
Q Consensus 120 ------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~ 187 (324)
...++...++.++...|++++|.+.|..++... |.+ . +.+.+|.+++. .+++++|+
T Consensus 88 ~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~--~-~~~~~a~l~~~-------~~r~~dA~ 155 (282)
T 4f3v_A 88 GGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEH--L-VAWMKAVVYGA-------AERWTDVI 155 (282)
T ss_dssp CTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHH--H-HHHHHHHHHHH-------TTCHHHHH
T ss_pred CCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--Cch--H-HHHHHHHHHHH-------cCCHHHHH
Confidence 234677778888999999999999998887766 765 3 77888888877 55899999
Q ss_pred HHHHHHhhhC-Ccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--CC-CHHHHHHhHHHHhhcCCCHHHHHHHHHHH
Q psy8160 188 HCLQKSIEAD-PKS-GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKS--EG-NADTWCSIGNKDFSNNSNREDYHQALNKY 262 (324)
Q Consensus 188 ~~~~~al~~~-~~~-~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~-~~~~~~~lg~~~~~~~~~~~~A~~~~~~~ 262 (324)
..|+++.... |.. ..+++.+|.++..+|++++|+.+|++++... |. .+++++.+|.++..+|+
T Consensus 156 ~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr------------ 223 (282)
T 4f3v_A 156 DQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN------------ 223 (282)
T ss_dssp HHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC------------
T ss_pred HHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC------------
Confidence 9998877653 221 3588999999999999999999999997543 44 45566666666666666
Q ss_pred HhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhhc
Q psy8160 263 RDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSN 305 (324)
Q Consensus 263 ~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 305 (324)
.++ |...|++++..+|+ +.+...|....
T Consensus 224 ------------~de--A~~~l~~a~a~~P~-~~~~~aL~~~~ 251 (282)
T 4f3v_A 224 ------------ESA--AVALLEWLQTTHPE-PKVAAALKDPS 251 (282)
T ss_dssp ------------HHH--HHHHHHHHHHHSCC-HHHHHHHHCTT
T ss_pred ------------HHH--HHHHHHHHHhcCCc-HHHHHHHhCCC
Confidence 566 88888888888888 77776665443
No 113
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.71 E-value=2.1e-17 Score=124.11 Aligned_cols=121 Identities=16% Similarity=0.109 Sum_probs=101.8
Q ss_pred HHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHH
Q psy8160 106 HLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETL 185 (324)
Q Consensus 106 ~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 185 (324)
.|++++...|.. ..+++.+|.++...|++++|+..|++++..+ |.+ +.++..+|.++.. .+++++
T Consensus 9 ~~~~al~~~p~~----~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~lg~~~~~-------~g~~~~ 73 (148)
T 2vgx_A 9 TIAMLNEISSDT----LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYD--SRFFLGLGACRQA-------MGQYDL 73 (148)
T ss_dssp SHHHHTTCCHHH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHH
T ss_pred hHHHHHcCCHhh----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--ccc--HHHHHHHHHHHHH-------HhhHHH
Confidence 445565555444 3788899999999999999999999999998 887 4589999999976 558999
Q ss_pred HHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHh
Q psy8160 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSI 241 (324)
Q Consensus 186 A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 241 (324)
|+..|++++.++|+++.+++.+|.++...|++++|+..|+++++++|+++......
T Consensus 74 A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 129 (148)
T 2vgx_A 74 AIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELS 129 (148)
T ss_dssp HHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHH
Confidence 99999999999999999999999999999999999999999999999887654433
No 114
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.71 E-value=1.5e-18 Score=148.49 Aligned_cols=183 Identities=17% Similarity=0.173 Sum_probs=156.6
Q ss_pred HHHHHHHHH----HhccCCCcccchHHHHHHHHHHH------------HhccHHHHHHHHHHHh-cCCCCchhhHHHHHH
Q psy8160 31 IKAIKTFQQ----LLYVDPSYLRANEVHLRLGLMFK------------VNNEYDSALKHLTLCL-IDASPCTFTKLEGLM 93 (324)
Q Consensus 31 ~~A~~~~~~----~l~~~p~~~~~~~~~~~lg~~~~------------~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~ 93 (324)
++|+..+.. ++.+.|++. +...|.... ..+++++|+..|++++ .+|.....+..+|.+
T Consensus 82 e~al~~~~~Ge~~~l~i~p~~a-----yg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~ 156 (336)
T 1p5q_A 82 ERAIQRMEKGEHSIVYLKPSYA-----FGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTV 156 (336)
T ss_dssp HHHHTTCCTTCEEEEEECTTTT-----TTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEECCccc-----cCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHH
Confidence 889999988 888888752 333443322 5677888999999888 889999999999999
Q ss_pred HHhcccHHHHHHHHHHHHHhcCCCcc-----------cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHH
Q psy8160 94 FKVNNEYDSALKHLTLCLIDASPCTF-----------TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADI 162 (324)
Q Consensus 94 ~~~~~~~~~A~~~~~~~l~~~~~~~~-----------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 162 (324)
+...|++++|+..|++++...|.... ....++.++|.++...|++++|+..|++++..+ |++ ..+
T Consensus 157 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~--~~a 232 (336)
T 1p5q_A 157 YFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD--SNN--EKG 232 (336)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC--HHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCc--HHH
Confidence 99999999999999999998887621 114789999999999999999999999999999 888 459
Q ss_pred HHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHH-HHHHHHHHc
Q psy8160 163 CRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDA-FLAYRNSVE 229 (324)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A-~~~~~~al~ 229 (324)
++.+|.++.. .+++++|+.+|+++++++|.++.++..+|.++...|++++| ...|++++.
T Consensus 233 ~~~lg~~~~~-------~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 233 LSRRGEAHLA-------VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHH-------TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999977 55999999999999999999999999999999999999998 456777664
No 115
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.70 E-value=1.3e-16 Score=132.96 Aligned_cols=189 Identities=8% Similarity=-0.016 Sum_probs=145.1
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
....++.+|..+...|++++|+..|++++ .+|.+..++..+|.++...|++++|+..+++++...|.+. .+++.+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l 78 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV----KAHFFL 78 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH----HHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH----HHHHHH
Confidence 45678999999999999999999999999 9999999999999999999999999999999998887765 789999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
|.++...|++++|+..|++++..+ |++.. .+....+.... ..++...........|.++.+...++
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~--p~~~~--~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~i~~~l~ 144 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLA--KEQRL--NFGDDIPSALR----------IAKKKRWNSIEERRIHQESELHSYLT 144 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH--HHTTC--CCCSHHHHHHH----------HHHHHHHHHHHHTCCCCCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--ccchh--hHHHHHHHHHH----------HHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 999999999999999999999887 54421 11111122211 11222233333345677777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhc-CCCHHHHHHHH
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSN-NSNREDYHQAL 259 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-~~~~~~A~~~~ 259 (324)
... .|++++|++.++++++.+|++......++.++... +. +++|...|
T Consensus 145 ~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~-~~~a~~~f 193 (281)
T 2c2l_A 145 RLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKY-MADMDELF 193 (281)
T ss_dssp HHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHH-HHHHHHHH
Confidence 654 68889999999999999998888877777777666 55 67776666
No 116
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.70 E-value=1.7e-16 Score=129.83 Aligned_cols=201 Identities=11% Similarity=0.036 Sum_probs=168.6
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHH-------HHHHHHhccHHHHHHHHHHHh-cCCCCchhhHH-------------
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRL-------GLMFKVNNEYDSALKHLTLCL-IDASPCTFTKL------------- 89 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~l-------g~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~------------- 89 (324)
..|.+.|.+++.++|+. .++|..+ +.++...+...+++..+++.+ +.|....+...
T Consensus 23 ~~A~~~F~~a~~~dP~~---~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~ 99 (282)
T 4f3v_A 23 ARSLDLFTEITNYDESA---CDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVT 99 (282)
T ss_dssp HHHHHHHHHHHHHCTTC---HHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECS
T ss_pred HHHHHHHHHHHHhChhh---hHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccC
Confidence 89999999999999874 5689999 899999999999999999999 88776655444
Q ss_pred --------HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhH
Q psy8160 90 --------EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKAD 161 (324)
Q Consensus 90 --------la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 161 (324)
.+.++...|+|++|.+.|+.++...| ... +.+.+|.++...+++++|+..|+.+.... ++.....
T Consensus 100 ~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p----~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~--d~~~~~~ 172 (282)
T 4f3v_A 100 SPLAITMGFAACEAAQGNYADAMEALEAAPVAGS----EHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP--DKFLAGA 172 (282)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTC----HHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS--CHHHHHH
T ss_pred CHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----chH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC--CcccHHH
Confidence 67889999999999998887775443 223 78999999999999999999999776653 2222355
Q ss_pred HHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC--Cc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q psy8160 162 ICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD--PK-SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTW 238 (324)
Q Consensus 162 ~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 238 (324)
+++.+|.++.. .|++++|+.+|++++... |. .+++++.+|.++..+|+.++|...|++++..+|+ +.++
T Consensus 173 a~~~LG~al~~-------LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~ 244 (282)
T 4f3v_A 173 AGVAHGVAAAN-------LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVA 244 (282)
T ss_dssp HHHHHHHHHHH-------TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred HHHHHHHHHHH-------CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHH
Confidence 89999999966 559999999999998554 55 6789999999999999999999999999999999 8888
Q ss_pred HHhHHHHhhcC
Q psy8160 239 CSIGNKDFSNN 249 (324)
Q Consensus 239 ~~lg~~~~~~~ 249 (324)
..|...-+...
T Consensus 245 ~aL~~~~~~~~ 255 (282)
T 4f3v_A 245 AALKDPSYRLK 255 (282)
T ss_dssp HHHHCTTCCCC
T ss_pred HHHhCCCCCCC
Confidence 87765544443
No 117
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.70 E-value=3.3e-17 Score=129.31 Aligned_cols=141 Identities=14% Similarity=-0.001 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCch--------------hhHHHHHHHHHHHhhhhhcccchhHHHHH
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHL--------------KADICRQLGWMYHCIDTLGEKSHRETLAI 187 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~~~~~~~~A~ 187 (324)
...+..+|..+...|++++|+..|++++... |.+. ...++..+|.++.. .+++++|+
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-------~~~~~~A~ 108 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQILLDKKKNIEISCNLNLATCYNK-------NKDYPKAI 108 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHH-------TTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchhhHHHHHHHHHHHHHHHHHHHHHH-------hcCHHHHH
Confidence 3567788888888888888888888888876 5442 12589999999977 55999999
Q ss_pred HHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHH-HHHHHHHhhH
Q psy8160 188 HCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYH-QALNKYRDLG 266 (324)
Q Consensus 188 ~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~-~~~~~~~~lg 266 (324)
.+++++++.+|.++.+++.+|.++...|++++|+..|++++.++|+++.++..++.++...++ ..++. ..|..++..|
T Consensus 109 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 109 DHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE-ARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH-HHC-------------
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999999999999999999999 88887 4446777777
Q ss_pred HHHHHc
Q psy8160 267 DFLVIN 272 (324)
Q Consensus 267 ~~~~~~ 272 (324)
.+|...
T Consensus 188 ~~~~~~ 193 (198)
T 2fbn_A 188 PLYEEK 193 (198)
T ss_dssp ------
T ss_pred chhhcc
Confidence 777543
No 118
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.69 E-value=4.9e-17 Score=122.10 Aligned_cols=108 Identities=10% Similarity=0.001 Sum_probs=103.2
Q ss_pred HHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH--------
Q psy8160 188 HCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-------- 259 (324)
Q Consensus 188 ~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-------- 259 (324)
..|++++..+|.+..+++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++...|+ +++|+.+|
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ-YDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHST
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCC
Confidence 468899999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred ---HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhh
Q psy8160 260 ---NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHIN 298 (324)
Q Consensus 260 ---~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 298 (324)
.+++++|.+|...|++++ |+.+|+++++++|++|...
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~--A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAE--AESGLFLAQELIANXPEFX 126 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHTTCGGGH
T ss_pred CCchHHHHHHHHHHHcCCHHH--HHHHHHHHHHHCcCCCcch
Confidence 899999999999999999 9999999999999987653
No 119
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.69 E-value=9.6e-15 Score=140.22 Aligned_cols=216 Identities=12% Similarity=0.077 Sum_probs=156.6
Q ss_pred HHHHHHHHHHhccCCC-cccchHHHH---------------------------HHHHHHHHhccHHHHHHHHHHHhcCCC
Q psy8160 31 IKAIKTFQQLLYVDPS-YLRANEVHL---------------------------RLGLMFKVNNEYDSALKHLTLCLIDAS 82 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~-~~~~~~~~~---------------------------~lg~~~~~~~~~~~A~~~~~~al~~~~ 82 (324)
.+|++.|++++ +.|+ |..+..... .+|.++...|.+++|...|+++-
T Consensus 1002 ~EaieLLEKiv-l~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~---- 1076 (1630)
T 1xi4_A 1002 NELIELLEKIV-LDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFD---- 1076 (1630)
T ss_pred HHHHHHHHHHH-cCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcC----
Confidence 88999999988 5554 322222111 23677777788888888887652
Q ss_pred CchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHH
Q psy8160 83 PCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADI 162 (324)
Q Consensus 83 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 162 (324)
.....+..++...+++++|.+.++++- . ..+|+++|..+...|++++|+++|.++ ++ ...
T Consensus 1077 --~~~~A~~VLie~i~nldrAiE~Aervn-----~----p~vWsqLAKAql~~G~~kEAIdsYiKA-------dD--~sa 1136 (1630)
T 1xi4_A 1077 --VNTSAVQVLIEHIGNLDRAYEFAERCN-----E----PAVWSQLAKAQLQKGMVKEAIDSYIKA-------DD--PSS 1136 (1630)
T ss_pred --CHHHHHHHHHHHHhhHHHHHHHHHhcC-----C----HHHHHHHHHHHHhCCCHHHHHHHHHhc-------CC--hHH
Confidence 111223334446677777777777551 1 368889999999999999999998775 22 347
Q ss_pred HHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhH
Q psy8160 163 CRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242 (324)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 242 (324)
+..++.++.+ .|++++|+++|..+.+..+. +.+-..+|.+|.+.+++++ ++.|. ...+...|..+|
T Consensus 1137 y~eVa~~~~~-------lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~fI-----~~~n~ad~~~iG 1202 (1630)
T 1xi4_A 1137 YMEVVQAANT-------SGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEEFI-----NGPNNAHIQQVG 1202 (1630)
T ss_pred HHHHHHHHHH-------cCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHHHH-----hCCCHHHHHHHH
Confidence 7888888866 44888999999888877743 2223348888888888774 44442 233456777899
Q ss_pred HHHhhcCCCHHHHHHHH---HHHHhhHHHHHHcCCCCcchHHHHHHHhh
Q psy8160 243 NKDFSNNSNREDYHQAL---NKYRDLGDFLVINNIPTSNNNRQCYNSYS 288 (324)
Q Consensus 243 ~~~~~~~~~~~~A~~~~---~~~~~lg~~~~~~~~~~~~~A~~~~~~al 288 (324)
..+...|+ |++|+.+| ..|..+|.+|.+.|++++ |++++++|.
T Consensus 1203 d~le~eg~-YeeA~~~Y~kA~ny~rLA~tLvkLge~q~--AIEaarKA~ 1248 (1630)
T 1xi4_A 1203 DRCYDEKM-YDAAKLLYNNVSNFGRLASTLVHLGEYQA--AVDGARKAN 1248 (1630)
T ss_pred HHHHhcCC-HHHHHHHHHhhhHHHHHHHHHHHhCCHHH--HHHHHHHhC
Confidence 99999999 99999999 889999999999999999 999999994
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.69 E-value=6.5e-17 Score=134.87 Aligned_cols=183 Identities=11% Similarity=0.124 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG 201 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 201 (324)
...+..+|..+...|++++|+..|++++..+ |.+ +.++..+|.++.. .+++++|+..++++++++|.++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~la~~~~~-------~~~~~~A~~~~~~al~~~p~~~ 72 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLV--AVYYTNRALCYLK-------MQQPEQALADCRRALELDGQSV 72 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHTTSCTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--Ccc--HHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHhCCCCH
Confidence 3678889999999999999999999999998 877 5599999999977 5599999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH-----HHHHHhHHHHhhcCCCHHHHHHHH-----HHHHhhHHHHHH
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA-----DTWCSIGNKDFSNNSNREDYHQAL-----NKYRDLGDFLVI 271 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~~~~~~~~A~~~~-----~~~~~lg~~~~~ 271 (324)
.+++.+|.++...|++++|+..|++++.++|+++ ..|..+ ....... +......- .+...++.++
T Consensus 73 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~i~~~l~~l~-- 147 (281)
T 2c2l_A 73 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKR-WNSIEERRIHQESELHSYLTRLI-- 147 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHH-HHHHHHTCCCCCCHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHH-HHHHHHHHHhhhHHHHHHHHHHH--
Confidence 9999999999999999999999999999988763 233222 1111122 22211111 4555566655
Q ss_pred cCCCCcchHHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHhhc
Q psy8160 272 NNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRDL 322 (324)
Q Consensus 272 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~ 322 (324)
.|++++ |++.|+++++.+|++..+...+..+.....+.+.+|.+.|...
T Consensus 148 ~~~~~~--A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 148 AAERER--ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp HHHHHH--HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHH--HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 578889 9999999999999998888877655444446677777776543
No 121
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.68 E-value=2e-15 Score=110.41 Aligned_cols=116 Identities=26% Similarity=0.444 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHH
Q psy8160 124 VRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQS 203 (324)
Q Consensus 124 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 203 (324)
+++.+|.++...|++++|+..+++++... |.+ ..++..+|.++.. .+++++|+..+++++...|.++.+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~~a~~~~~-------~~~~~~A~~~~~~~~~~~~~~~~~ 71 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PRS--AEAWYNLGNAYYK-------QGDYDEAIEYYQKALELDPRSAEA 71 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC--Ccc--hhHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHCCCchHH
Confidence 34455555555555555555555555554 443 2255555555543 225555555555555555555555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCC
Q psy8160 204 LYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNS 250 (324)
Q Consensus 204 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 250 (324)
++.+|.++...|++++|+..+++++...|.++.++..+|.++...|+
T Consensus 72 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 118 (136)
T 2fo7_A 72 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD 118 (136)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc
Confidence 55555555555555555555555555555555555555555555444
No 122
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.68 E-value=3.9e-15 Score=108.82 Aligned_cols=129 Identities=25% Similarity=0.356 Sum_probs=94.9
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWM 169 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~ 169 (324)
+|.++...|++++|+..+++++...|... .++..+|.++...|++++|+..+++++... |.. ..++..+|.+
T Consensus 7 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~l~~~ 78 (136)
T 2fo7_A 7 LGNAYYKQGDYDEAIEYYQKALELDPRSA----EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRS--AEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHcCCcch----hHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCc--hHHHHHHHHH
Confidence 34444444444444444444554444432 567778888888888888888888888877 665 3477888888
Q ss_pred HHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q psy8160 170 YHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG 233 (324)
Q Consensus 170 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 233 (324)
+.. .+++++|+..+++++...|.++.++..+|.++...|++++|+..+++++..+|+
T Consensus 79 ~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 79 YYK-------QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHT-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHH-------hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 866 448888888888888888888888888888888888888888888888888875
No 123
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.3e-15 Score=110.90 Aligned_cols=115 Identities=15% Similarity=0.015 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG 201 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 201 (324)
++.++.+|..+...|++++|+..|++++..+ |.+ +.++..+|.++.. .+++++|+..++++++++|.++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~--~~~~~~~a~~~~~-------~~~~~~A~~~~~~al~~~p~~~ 72 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PED--ARGYSNRAAALAK-------LMSFPEAIADCNKAIEKDPNFV 72 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCC--hHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHhCCCcH
Confidence 4678999999999999999999999999999 887 5599999999977 5599999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccC------CCCHHHHHHhHHHHhh
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKS------EGNADTWCSIGNKDFS 247 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~ 247 (324)
.+|+.+|.++...|++++|+..|++++.++ |+++.++..++.+...
T Consensus 73 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 73 RAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999 9999999999887654
No 124
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.68 E-value=1.3e-16 Score=118.83 Aligned_cols=127 Identities=12% Similarity=0.056 Sum_probs=104.7
Q ss_pred HHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHH
Q psy8160 107 LTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLA 186 (324)
Q Consensus 107 ~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A 186 (324)
|++++...|.. ...++.+|.++...|++++|+..|++++..+ |.+ +.++..+|.++.. .+++++|
T Consensus 7 l~~al~~~p~~----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~lg~~~~~-------~g~~~~A 71 (142)
T 2xcb_A 7 LAMLRGLSEDT----LEQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYD--ARYFLGLGACRQS-------LGLYEQA 71 (142)
T ss_dssp --CCTTCCHHH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHH
T ss_pred HHHHHcCCHHH----HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--Ccc--HHHHHHHHHHHHH-------HhhHHHH
Confidence 34444444433 3778899999999999999999999999998 887 4599999999977 5599999
Q ss_pred HHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhc
Q psy8160 187 IHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSN 248 (324)
Q Consensus 187 ~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 248 (324)
+.+|++++.++|.++.+++.+|.++...|++++|+..|++++.++|+++..+.....+....
T Consensus 72 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l 133 (142)
T 2xcb_A 72 LQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAML 133 (142)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998887666555554433
No 125
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.68 E-value=3.9e-15 Score=124.85 Aligned_cols=174 Identities=16% Similarity=0.104 Sum_probs=139.7
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCc------hhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcc--cH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPC------TFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTF--TK 121 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~--~~ 121 (324)
...+...+..+...|++++|++.+.+++ ..|... .....+|.++...|++++|+..+++++...+.... ..
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 3456778889999999999999999999 766543 22445788889999999999999999976544322 34
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC-CCCCchh--hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKED-DLPVHLK--ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP 198 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 198 (324)
..++..+|.+|...|++++|+.+|++++... ..|+... ..++.++|.+|.. .+++++|+.+++++++..+
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~-------~~~y~~Al~~~~kal~~~~ 227 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL-------DSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH-------HhhHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999431 1143321 3689999999977 5599999999999998754
Q ss_pred c------cHHHHHHHHHHHHHcCCHHHH-HHHHHHHHccC
Q psy8160 199 K------SGQSLYLLGRCFAAVGKVHDA-FLAYRNSVEKS 231 (324)
Q Consensus 199 ~------~~~~~~~lg~~~~~~~~~~~A-~~~~~~al~~~ 231 (324)
. .+.+++.+|.++...|++++| ..+|++|+.+.
T Consensus 228 ~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 228 RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 3 268899999999999999999 77899998654
No 126
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.67 E-value=2.2e-15 Score=119.87 Aligned_cols=121 Identities=19% Similarity=0.274 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHH
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQ 202 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 202 (324)
..++.+|.++...|++++|+..|++++ + | + +.++..+|.++.. .+++++|+.+|+++++.+|.++.
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~--~-~--~~~~~~lg~~~~~-------~g~~~~A~~~~~~al~~~~~~~~ 72 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--D--P-H--SRICFNIGCMYTI-------LKNMTEAEKAFTRSINRDKHLAV 72 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--S--C-C--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--C--C-C--hHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCccchH
Confidence 457889999999999999999999985 3 3 2 5599999999977 55999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH----------------HHHHHhHHHHhhcCCCHHHHHHH
Q psy8160 203 SLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA----------------DTWCSIGNKDFSNNSNREDYHQA 258 (324)
Q Consensus 203 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~~lg~~~~~~~~~~~~A~~~ 258 (324)
+++.+|.++...|++++|+..|++++...|.++ .+++.+|.++...|+ +++|+..
T Consensus 73 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~ 143 (213)
T 1hh8_A 73 AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE-WKKAEEQ 143 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC-HHHHHHH
Confidence 999999999999999999999999999998876 555555555555555 4444333
No 127
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.67 E-value=6.4e-17 Score=139.80 Aligned_cols=265 Identities=11% Similarity=0.025 Sum_probs=108.2
Q ss_pred hhccccccchhhhHhHHHHH--HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhH
Q psy8160 11 EGIVTSVRVPKLQQFGKTLN--IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTK 88 (324)
Q Consensus 11 ~~~~~~~~~~~l~~~~~~~~--~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 88 (324)
+....|++|..||...+... ++|++.|.++ | +...+..++..+...|+|++|+.+++.+..+..++....
T Consensus 27 e~~~~~~vWs~La~A~l~~g~~~eAIdsfika----~----D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~ 98 (449)
T 1b89_A 27 ERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA----D----DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVET 98 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhCCChHHHHHHHHHHHHcCCHHHHHHHHHcC----C----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHH
Confidence 44567788888888777666 8999999764 2 223577788888888888888888877762222233333
Q ss_pred H----------------------------HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHH
Q psy8160 89 L----------------------------EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKT 140 (324)
Q Consensus 89 ~----------------------------la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 140 (324)
. +|..+...|.|++|..+|.++ +.+..+|.++..+|++++
T Consensus 99 ~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------------~n~~~LA~~L~~Lg~yq~ 166 (449)
T 1b89_A 99 ELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------------SNFGRLASTLVHLGEYQA 166 (449)
T ss_dssp ----------CHHHHTTTTTCC----------------CTTTHHHHHHHT------------TCHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------------hhHHHHHHHHHHhccHHH
Confidence 3 455555555555555555433 124555666666666666
Q ss_pred HHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHH
Q psy8160 141 AKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDA 220 (324)
Q Consensus 141 A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A 220 (324)
|++.++++. + ..+|...+.++.. .++++.|..+... +...|++ ...+..+|...|++++|
T Consensus 167 AVea~~KA~--~-------~~~Wk~v~~aCv~-------~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 167 AVDGARKAN--S-------TRTWKEVCFACVD-------GKEFRLAQMCGLH-IVVHADE---LEELINYYQDRGYFEEL 226 (449)
T ss_dssp HHHHHHHHT--C-------HHHHHHHHHHHHH-------TTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHcC--C-------chhHHHHHHHHHH-------cCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHHCCCHHHH
Confidence 666666551 1 2255555444433 3356666554443 2233332 33466778888888888
Q ss_pred HHHHHHHHccCCCCHHHHHHhHHHHhhc--CCCHHHHHHHH----------------HHHHhhHHHHHHcCCCCcchHHH
Q psy8160 221 FLAYRNSVEKSEGNADTWCSIGNKDFSN--NSNREDYHQAL----------------NKYRDLGDFLVINNIPTSNNNRQ 282 (324)
Q Consensus 221 ~~~~~~al~~~p~~~~~~~~lg~~~~~~--~~~~~~A~~~~----------------~~~~~lg~~~~~~~~~~~~~A~~ 282 (324)
+..+++++.+++.+...|+.+|.+|.+- ++ ..+.++.| ..|..+..+|.+.++++. |+.
T Consensus 227 i~lLe~aL~le~ah~~~ftel~il~~ky~p~k-~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~--A~~ 303 (449)
T 1b89_A 227 ITMLEAALGLERAHMGMFTELAILYSKFKPQK-MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN--AII 303 (449)
T ss_dssp HHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHH-HHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH--HHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH--HHH
Confidence 8888888888888888888888887654 34 55566666 567888888888888888 777
Q ss_pred HHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHh
Q psy8160 283 CYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYR 320 (324)
Q Consensus 283 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 320 (324)
.+-......=++.....-+ .+....+=|.+|+.-|-
T Consensus 304 tm~~h~~~a~~~~~f~~~~--~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 304 TMMNHPTDAWKEGQFKDII--TKVANVELYYRAIQFYL 339 (449)
T ss_dssp HHHHSTTTTCCHHHHHHHH--HHCSSTHHHHHHHHHHH
T ss_pred HHHhCChhhhhhHHHHHHH--hchhHHHHHHHHHHHHH
Confidence 5554432221222222222 12234466777766554
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.67 E-value=2.8e-15 Score=109.66 Aligned_cols=121 Identities=12% Similarity=0.081 Sum_probs=111.8
Q ss_pred ccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC
Q psy8160 119 FTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP 198 (324)
Q Consensus 119 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 198 (324)
......++.+|.++...|++++|+..|++++..+ |.+ ..++..+|.++.. .+++++|+.+++++++.+|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~--~~~~~~la~~~~~-------~~~~~~A~~~~~~a~~~~~ 81 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKD--AKLYSNRAACYTK-------LLEFQLALKDCEECIQLEP 81 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTC--HHHHHHHHHHHTT-------TTCHHHHHHHHHHHHHHCT
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCc--HHHHHHHHHHHHH-------hccHHHHHHHHHHHHHhCC
Confidence 3556889999999999999999999999999998 877 5599999999966 5599999999999999999
Q ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCC
Q psy8160 199 KSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNS 250 (324)
Q Consensus 199 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 250 (324)
.++.+++.+|.++...|++++|+..|++++..+|.++.++..++.++...|+
T Consensus 82 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 82 TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999987764
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=2.2e-15 Score=137.14 Aligned_cols=176 Identities=10% Similarity=0.038 Sum_probs=155.3
Q ss_pred HhccH-HHHHHHHHHHh-cCCCCchhhHHHHHHHHhccc----------HHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q psy8160 63 VNNEY-DSALKHLTLCL-IDASPCTFTKLEGLMFKVNNE----------YDSALKHLTLCLIDASPCTFTKLEVRFHIAH 130 (324)
Q Consensus 63 ~~~~~-~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~----------~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~ 130 (324)
..|++ ++|++.+.+++ .+|.+..+|...+.++...|+ ++++++++++++..+|.+. .+|...+.
T Consensus 40 ~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y----~aW~hR~w 115 (567)
T 1dce_A 40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY----GTWHHRCW 115 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH----HHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCH----HHHHHHHH
Confidence 34444 57788888888 889999888888888888877 8999999999999999887 89999999
Q ss_pred HHHHhh--cHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccch-hHHHHHHHHHHHhhhCCccHHHHHHH
Q psy8160 131 LHEVQR--KYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSH-RETLAIHCLQKSIEADPKSGQSLYLL 207 (324)
Q Consensus 131 ~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~l 207 (324)
++...+ +++++++.+.++++.+ |.+.. +|...+++... .+ .++++++++.++++.+|.+..+|..+
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d--~~N~~--aW~~R~~~l~~-------l~~~~~~el~~~~~~I~~~p~n~saW~~r 184 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEAD--ERNFH--CWDYRRFVAAQ-------AAVAPAEELAFTDSLITRNFSNYSSWHYR 184 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHC--TTCHH--HHHHHHHHHHH-------TCCCHHHHHHHHHTTTTTTCCCHHHHHHH
T ss_pred HHHHcccccHHHHHHHHHHHHhhc--ccccc--HHHHHHHHHHH-------cCCChHHHHHHHHHHHHHCCCCccHHHHH
Confidence 999999 6799999999999999 88855 99999999866 33 68899999999999999999999999
Q ss_pred HHHHHHc--------------CCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHH
Q psy8160 208 GRCFAAV--------------GKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNRED 254 (324)
Q Consensus 208 g~~~~~~--------------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~ 254 (324)
|.++... +.++++++++.+|+.++|++..+|+.++.++...+. +++
T Consensus 185 ~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~-~~~ 244 (567)
T 1dce_A 185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP-HDV 244 (567)
T ss_dssp HHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC-CSC
T ss_pred HHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC-ccc
Confidence 9998885 567999999999999999999999999999988877 444
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.66 E-value=4.1e-15 Score=113.23 Aligned_cols=127 Identities=18% Similarity=0.105 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc
Q psy8160 121 KLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS 200 (324)
Q Consensus 121 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 200 (324)
.+..++.+|.++...|++++|+..|++++..+ |.+ ..++..+|.++.. .+++++|+.+++++++.+|.+
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~--~~~~~~~a~~~~~-------~~~~~~A~~~~~~a~~~~~~~ 80 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELN--PSN--AIYYGNRSLAYLR-------TECYGYALGDATRAIELDKKY 80 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCC--hHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCccc
Confidence 35678999999999999999999999999998 877 5599999999977 559999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHH--HhhcCCCHHHHHHHH
Q psy8160 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNK--DFSNNSNREDYHQAL 259 (324)
Q Consensus 201 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~--~~~~~~~~~~A~~~~ 259 (324)
+.+++.+|.++...|++++|+..|++++..+|.++.++..++.+ +...|+ +++|+..+
T Consensus 81 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~-~~~A~~~~ 140 (166)
T 1a17_A 81 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA-FERAIAGD 140 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHHHcc
Confidence 99999999999999999999999999999999999988555544 777788 77777665
No 131
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.66 E-value=1.5e-16 Score=116.19 Aligned_cols=114 Identities=14% Similarity=0.058 Sum_probs=96.4
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWC 239 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 239 (324)
+.++..+|..++. .+++++|+.+|+++++++|.++.+|.++|.+|..+|++++|+..|+++++++|+++..+.
T Consensus 8 A~a~~~lG~~~~~-------~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 80 (127)
T 4gcn_A 8 AIAEKDLGNAAYK-------QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYK 80 (127)
T ss_dssp HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhH
Confidence 5688899999987 559999999999999999999999999999999999999999999999999987766555
Q ss_pred HhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhc
Q psy8160 240 SIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNN 300 (324)
Q Consensus 240 ~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 300 (324)
.+|. +|.++|.++...|++++ |+++|+++++..|+ |.+...
T Consensus 81 ~~a~-----------------~~~~lg~~~~~~~~~~~--A~~~~~kal~~~~~-~~~~~~ 121 (127)
T 4gcn_A 81 LIAK-----------------AMSRAGNAFQKQNDLSL--AVQWFHRSLSEFRD-PELVKK 121 (127)
T ss_dssp HHHH-----------------HHHHHHHHHHHTTCHHH--HHHHHHHHHHHSCC-HHHHHH
T ss_pred HHHH-----------------HHHHHHHHHHHcCCHHH--HHHHHHHHHhhCcC-HHHHHH
Confidence 5543 45667778888999999 99999999999885 444333
No 132
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.66 E-value=2.5e-16 Score=117.31 Aligned_cols=109 Identities=15% Similarity=-0.001 Sum_probs=100.1
Q ss_pred HHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH--------
Q psy8160 188 HCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-------- 259 (324)
Q Consensus 188 ~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-------- 259 (324)
..|++++..+|.+...++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++...|+ +++|+.+|
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p 83 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL-YEQALQSYSYGALMDI 83 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcCC
Confidence 467888999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred ---HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhh
Q psy8160 260 ---NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINN 299 (324)
Q Consensus 260 ---~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 299 (324)
.+++++|.+|...|++++ |+..|+++++++|+++....
T Consensus 84 ~~~~~~~~lg~~~~~~g~~~~--A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 84 NEPRFPFHAAECHLQLGDLDG--AESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp TCTHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHTCGGGHH
T ss_pred CCcHHHHHHHHHHHHcCCHHH--HHHHHHHHHHhCCCCcchHH
Confidence 789999999999999999 99999999999999886644
No 133
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.66 E-value=6.2e-15 Score=117.30 Aligned_cols=132 Identities=15% Similarity=0.178 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLH 132 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~ 132 (324)
.++.+|.++...|++++|+..|++++ +| +. .+++.+|.++
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-~~-~~--------------------------------------~~~~~lg~~~ 47 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ-DP-HS--------------------------------------RICFNIGCMY 47 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-SC-CH--------------------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc-CC-Ch--------------------------------------HHHHHHHHHH
Confidence 45666777777777777777666554 22 23 3455555555
Q ss_pred HHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC--------------
Q psy8160 133 EVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP-------------- 198 (324)
Q Consensus 133 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-------------- 198 (324)
...|++++|+..|++++..+ |.+ ..++..+|.++.. .+++++|+..|+++++..|
T Consensus 48 ~~~g~~~~A~~~~~~al~~~--~~~--~~~~~~lg~~~~~-------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 116 (213)
T 1hh8_A 48 TILKNMTEAEKAFTRSINRD--KHL--AVAYFQRGMLYYQ-------TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQF 116 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCC
T ss_pred HHcCCHHHHHHHHHHHHHhC--ccc--hHHHHHHHHHHHH-------cccHHHHHHHHHHHHHhCCCccHHHHHHhcccc
Confidence 55555555555555555555 444 2355555555544 2355555555555555444
Q ss_pred --ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH
Q psy8160 199 --KSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA 235 (324)
Q Consensus 199 --~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 235 (324)
..+.+++.+|.++...|++++|+..|++++.++|++.
T Consensus 117 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 117 KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp EEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred CccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 4559999999999999999999999999999999864
No 134
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.65 E-value=3e-15 Score=114.30 Aligned_cols=116 Identities=17% Similarity=0.137 Sum_probs=105.7
Q ss_pred cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc
Q psy8160 120 TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK 199 (324)
Q Consensus 120 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 199 (324)
.....++.+|.++...|++++|+..|++++..+ |.+ ..++..+|.++.. .+++++|+.+|+++++++|.
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~l~~~~~~-------~g~~~~A~~~~~~al~~~p~ 77 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PAN--PIYLSNRAAAYSA-------SGQHEKAAEDAELATVVDPK 77 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcC--HHHHHHHHHHHHH-------ccCHHHHHHHHHHHHHhCCC
Confidence 446789999999999999999999999999999 887 5599999999977 55999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHh
Q psy8160 200 SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDF 246 (324)
Q Consensus 200 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 246 (324)
++.+|+.+|.++...|++++|+..|++++.++|+++.+|+..+....
T Consensus 78 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 124 (164)
T 3sz7_A 78 YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETT 124 (164)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998877765544
No 135
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.65 E-value=8.2e-15 Score=122.84 Aligned_cols=172 Identities=16% Similarity=0.136 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCch------hhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCc--ccHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCT------FTKLEGLMFKVNNEYDSALKHLTLCLIDASPCT--FTKLE 123 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~------~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~--~~~~~ 123 (324)
.+...+..+...|++++|+..+++++ ..+.... .+..+|.++...|++++|+.++++++...+... .....
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 34455778899999999999999999 6665544 223478888889999999999999998544332 23456
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhcCC-C--CCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc
Q psy8160 124 VRFHIAHLHEVQRKYKTAKDSYEQLLKEDD-L--PVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS 200 (324)
Q Consensus 124 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 200 (324)
++..+|.+|...|++++|+.+|++++.... . .....+.++.++|.+|.. .+++++|+.++++++++.+..
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~-------~~~y~~A~~~~~~al~~~~~~ 229 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL-------DSRYEESLYQVNKAIEISCRI 229 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHc
Confidence 799999999999999999999999995321 0 111226689999999977 559999999999999876543
Q ss_pred ------HHHHHHHHHHHHHcCC-HHHHHHHHHHHHccC
Q psy8160 201 ------GQSLYLLGRCFAAVGK-VHDAFLAYRNSVEKS 231 (324)
Q Consensus 201 ------~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~ 231 (324)
+.+++.+|.++..+|+ +++|+.+|++|+.+.
T Consensus 230 ~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 230 NSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp TBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 6899999999999994 699999999998753
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.65 E-value=1.2e-15 Score=118.03 Aligned_cols=133 Identities=13% Similarity=0.105 Sum_probs=109.6
Q ss_pred HhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHH-HHhh
Q psy8160 95 KVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWM-YHCI 173 (324)
Q Consensus 95 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~-~~~~ 173 (324)
...|++++|+..+++++...|... .+++.+|.++...|++++|+.+|++++..+ |.+ ..++..+|.+ +..
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~--~~~~~~la~~l~~~- 91 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNS----EQWALLGEYYLWQNDYSNSLLAYRQALQLR--GEN--AELYAALATVLYYQ- 91 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSC--HHHHHHHHHHHHHH-
T ss_pred hhccCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC--HHHHHHHHHHHHHh-
Confidence 345778888888888888877665 788999999999999999999999999998 877 4588999988 645
Q ss_pred hhhcccchhH--HHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhH
Q psy8160 174 DTLGEKSHRE--TLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242 (324)
Q Consensus 174 ~~~~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 242 (324)
.+++ ++|+..++++++.+|.++.+++.+|.++...|++++|+..|++++..+|+++.....+.
T Consensus 92 ------~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 156 (177)
T 2e2e_A 92 ------ASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVE 156 (177)
T ss_dssp ------TTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHH
T ss_pred ------cCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 3477 99999999999999999999999999999999999999999999999998876554443
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.64 E-value=8.1e-15 Score=106.63 Aligned_cols=119 Identities=13% Similarity=0.129 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc
Q psy8160 121 KLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS 200 (324)
Q Consensus 121 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 200 (324)
....++.+|.++...|++++|+..|++++... |.+ ..++..+|.++.. .+++++|+.++++++..+|.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~~a~~~~~-------~~~~~~A~~~~~~~~~~~~~~ 79 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN--PAN--AVYFCNRAAAYSK-------LGNYAGAVQDCERAICIDPAY 79 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTC
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCC--HHHHHHHHHHHHH-------hhchHHHHHHHHHHHhcCccC
Confidence 34688999999999999999999999999998 877 5599999999976 459999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCC
Q psy8160 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNS 250 (324)
Q Consensus 201 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 250 (324)
+.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 80 SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999998887
No 138
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.64 E-value=3.3e-14 Score=119.17 Aligned_cols=156 Identities=12% Similarity=0.057 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh----hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc
Q psy8160 124 VRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK----ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK 199 (324)
Q Consensus 124 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 199 (324)
.+...+..+...|++++|++.+.+++... +.... ...++.+|.++.. .+++++|+.++++++...+.
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~A~~~~~~al~~~~~ 147 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQFLQWQYYVAAYVLK-------KVDYEYCILELKKLLNQQLT 147 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHHHHHHHT-------SSCHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccc--cCChhHHHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHHHhc
Confidence 34455666677777777777777777665 32211 2234445555533 33677777777777765433
Q ss_pred c------HHHHHHHHHHHHHcCCHHHHHHHHHHHH---ccCCCCH----HHHHHhHHHHhhcCCCHHHHHHHH-------
Q psy8160 200 S------GQSLYLLGRCFAAVGKVHDAFLAYRNSV---EKSEGNA----DTWCSIGNKDFSNNSNREDYHQAL------- 259 (324)
Q Consensus 200 ~------~~~~~~lg~~~~~~~~~~~A~~~~~~al---~~~p~~~----~~~~~lg~~~~~~~~~~~~A~~~~------- 259 (324)
. ..++..+|.+|...|++++|+.+|++++ +..|+++ .+++++|.+|...|+ +++|+.+|
T Consensus 148 ~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 148 GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-YEESLYQVNKAIEIS 226 (293)
T ss_dssp SSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh-HHHHHHHHHHHHHHH
Confidence 2 3567777777777777777777777777 3444432 466777777777777 77777776
Q ss_pred ----------HHHHhhHHHHHHcCCCCcchH-HHHHHHhhhcC
Q psy8160 260 ----------NKYRDLGDFLVINNIPTSNNN-RQCYNSYSTSI 291 (324)
Q Consensus 260 ----------~~~~~lg~~~~~~~~~~~~~A-~~~~~~al~~~ 291 (324)
.+++++|.+|...|++++ | ..+|++|+.+.
T Consensus 227 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~--Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 227 CRINSMALIGQLYYQRGECLRKLEYEEA--EIEDAYKKASFFF 267 (293)
T ss_dssp HHTTBCSSHHHHHHHHHHHHHHTTCCHH--HHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHcCCcHH--HHHHHHHHHHHHH
Confidence 567788888888888888 8 67788887653
No 139
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=2.6e-15 Score=109.27 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=97.8
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWC 239 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 239 (324)
+..+..+|..++. .+++++|+..|+++++.+|.++.+|+.+|.++...|++++|+..|++++.++|+++.+|+
T Consensus 4 a~~~~~~g~~~~~-------~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 76 (126)
T 3upv_A 4 AEEARLEGKEYFT-------KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYI 76 (126)
T ss_dssp HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 5688899999877 559999999999999999999999999999999999999999999999999999999988
Q ss_pred HhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcC------CChhhhhhchhh
Q psy8160 240 SIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSI------ASCKHINNNKDF 303 (324)
Q Consensus 240 ~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~ 303 (324)
.+|.++...|+ +++ |+..|+++++++ |+++.+...+..
T Consensus 77 ~lg~~~~~~~~------------------------~~~--A~~~~~~al~~~p~~~~~p~~~~~~~~l~~ 120 (126)
T 3upv_A 77 RKATAQIAVKE------------------------YAS--ALETLDAARTKDAEVNNGSSAREIDQLYYK 120 (126)
T ss_dssp HHHHHHHHTTC------------------------HHH--HHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHhC------------------------HHH--HHHHHHHHHHhCcccCCchhHHHHHHHHHH
Confidence 88888888887 556 888888999988 888777666553
No 140
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=1e-15 Score=139.34 Aligned_cols=193 Identities=7% Similarity=-0.000 Sum_probs=171.3
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhcc----------HHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcc-
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNE----------YDSALKHLTLCL-IDASPCTFTKLEGLMFKVNN- 98 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~----------~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~- 98 (324)
++|++.+.+++.++|+ ...+|...|.+....++ ++++++.+.+++ .+|.+..+|...+.++...+
T Consensus 46 eeal~~~~~~l~~nP~---~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 46 ESVLELTSQILGANPD---FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp HHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHCch---hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 8999999999999987 45689999999999988 999999999999 99999999999999999999
Q ss_pred -cHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhh-cHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhh
Q psy8160 99 -EYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQR-KYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTL 176 (324)
Q Consensus 99 -~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~ 176 (324)
+++++++.+++++..+|.+. .+|...+.+....| .++++++++.++++.+ |.+ ..+|..++.++......
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~----~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--p~n--~saW~~r~~ll~~l~~~ 194 (567)
T 1dce_A 123 PNWARELELCARFLEADERNF----HCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSN--YSSWHYRSCLLPQLHPQ 194 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCC--HHHHHHHHHHHHHHSCC
T ss_pred ccHHHHHHHHHHHHhhccccc----cHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--CCC--ccHHHHHHHHHHhhccc
Confidence 77999999999999999886 89999999999999 8999999999999999 988 44999999998663111
Q ss_pred c-------ccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHH------------HHHHHHHHHccCCCC
Q psy8160 177 G-------EKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHD------------AFLAYRNSVEKSEGN 234 (324)
Q Consensus 177 ~-------~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~------------A~~~~~~al~~~p~~ 234 (324)
. ...+.++++++++.+++..+|++..+|+.++.++...+++++ |+..|.+++.++|..
T Consensus 195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~~~~ 271 (567)
T 1dce_A 195 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM 271 (567)
T ss_dssp CCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEEECTTBTT
T ss_pred ccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccceeccccc
Confidence 0 013589999999999999999999999999999999988766 667788888888763
No 141
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.63 E-value=1.5e-14 Score=121.30 Aligned_cols=155 Identities=12% Similarity=0.054 Sum_probs=99.8
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh----hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH
Q psy8160 126 FHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK----ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG 201 (324)
Q Consensus 126 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 201 (324)
...+..+...|++++|+..+++++... +.... ...+..+|.++.. .+++++|+.++++++...+...
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~--~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~Ai~~~~~al~~~~~~~ 149 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQFLQWQYYVAAYVLK-------KVDYEYCILELKKLLNQQLTGI 149 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHHHHHHHTT-------SSCHHHHHHHHHHHHHTCCCCS
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccc--cCChHHHHHHHHHHHHHHHHHc-------ccCHHHHHHHHHHHHHHhcccc
Confidence 334556666777777777777776654 32221 1123335555533 3367777777777776443322
Q ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHcc-------CCCCHHHHHHhHHHHhhcCCCHHHHHHHH---------
Q psy8160 202 ------QSLYLLGRCFAAVGKVHDAFLAYRNSVEK-------SEGNADTWCSIGNKDFSNNSNREDYHQAL--------- 259 (324)
Q Consensus 202 ------~~~~~lg~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~lg~~~~~~~~~~~~A~~~~--------- 259 (324)
.++..+|.+|...|++++|+.+|+++++. .+..+.+++++|.+|...|+ +++|+.++
T Consensus 150 ~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 150 DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-YEESLYQVNKAIEISCR 228 (293)
T ss_dssp CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHH
Confidence 35677777777777777777777777731 12224466777777777777 77777766
Q ss_pred --------HHHHhhHHHHHHcCC-CCcchHHHHHHHhhhcCC
Q psy8160 260 --------NKYRDLGDFLVINNI-PTSNNNRQCYNSYSTSIA 292 (324)
Q Consensus 260 --------~~~~~lg~~~~~~~~-~~~~~A~~~~~~al~~~p 292 (324)
.+|+++|.+|...|+ +++ |+.+|++|+.+..
T Consensus 229 ~~~~~~~~~~~~~lg~~~~~~g~~~~~--A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 229 INSMALIGQLYYQRGECLRKLEYEEAE--IEDAYKKASFFFD 268 (293)
T ss_dssp TTBCTTHHHHHHHHHHHHHHTTCCHHH--HHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHhCCcHHH--HHHHHHHHHHHHH
Confidence 567888888888885 488 9999999987643
No 142
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.62 E-value=1.1e-15 Score=113.63 Aligned_cols=112 Identities=10% Similarity=0.007 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc-------cHH-----HHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK-------SGQ-----SLYLLGRCFAAVGKVHDAFLAYRNS 227 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-------~~~-----~~~~lg~~~~~~~~~~~A~~~~~~a 227 (324)
+..+...|..++. .|++++|+..|+++++++|. +.. +|.++|.++..+|++++|+..|+++
T Consensus 11 a~~~~~~G~~l~~-------~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kA 83 (159)
T 2hr2_A 11 AYLALSDAQRQLV-------AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA 83 (159)
T ss_dssp HHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5678888888876 55999999999999999998 443 9999999999999999999999999
Q ss_pred Hcc-------CCCCHHHH----HHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhh
Q psy8160 228 VEK-------SEGNADTW----CSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKH 296 (324)
Q Consensus 228 l~~-------~p~~~~~~----~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 296 (324)
+++ +|+++.+| +++|.++..+|+ +++ |+.+|+++++++|++..
T Consensus 84 L~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr------------------------~eE--Al~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 84 LHYFNRRGELNQDEGKLWISAVYSRALALDGLGR------------------------GAE--AMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTC------------------------HHH--HHHHHHHHHHHHHHCCS
T ss_pred HHhhhccccCCCchHHHHHHHHHhHHHHHHHCCC------------------------HHH--HHHHHHHHHhcCCCcHH
Confidence 999 99988888 777776666666 677 99999999999999998
Q ss_pred hhhchhhh
Q psy8160 297 INNNKDFS 304 (324)
Q Consensus 297 ~~~~l~~~ 304 (324)
+...+..+
T Consensus 138 ~~~~~~~~ 145 (159)
T 2hr2_A 138 ETPGKERM 145 (159)
T ss_dssp CCTTHHHH
T ss_pred HHHHHHHH
Confidence 87776554
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.62 E-value=1.5e-15 Score=117.49 Aligned_cols=117 Identities=13% Similarity=0.210 Sum_probs=107.9
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHH-HhhcCCCH--HHHH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNK-DFSNNSNR--EDYH 256 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~~~~~--~~A~ 256 (324)
.+++++|+..+++++..+|.++.+|+.+|.++...|++++|+..|++++.++|+++.++..+|.+ +...|+ + ++|+
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~-~~~~~A~ 101 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQ-HMTAQTR 101 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT-CCCHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCC-cchHHHH
Confidence 45889999999999999999999999999999999999999999999999999999999999999 889999 9 9999
Q ss_pred HHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhh
Q psy8160 257 QAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINN 299 (324)
Q Consensus 257 ~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 299 (324)
..| .+++.+|.+|...|++++ |+..|+++++.+|+++....
T Consensus 102 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~--A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 102 AMIDKALALDSNEITALMLLASDAFMQANYAQ--AIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHTCCTTSCHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcccHHH--HHHHHHHHHhhCCCCccHHH
Confidence 998 889999999999999999 99999999999999865443
No 144
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.62 E-value=4e-16 Score=139.00 Aligned_cols=147 Identities=13% Similarity=0.108 Sum_probs=116.1
Q ss_pred ccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCch-------------hhHHHH
Q psy8160 98 NEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHL-------------KADICR 164 (324)
Q Consensus 98 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~-------------~~~~~~ 164 (324)
+++++|+..|+.++...|.. ...+..+|.++...|++++|+..|++++..+ |.+. ...++.
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~----a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~ 321 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQ----AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGLSEKESKASESFLLAAFL 321 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSCCHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHH----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccCChHHHHHHHHHHHHHHH
Confidence 34445555444444333322 3567777888888888888888888887776 5541 145999
Q ss_pred HHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHH
Q psy8160 165 QLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNK 244 (324)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 244 (324)
++|.++.. .+++++|+.+|+++++++|.++.+|+.+|.++..+|++++|+..|+++++++|++..++..++.+
T Consensus 322 nla~~~~~-------~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 322 NLAMCYLK-------LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHH-------TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHH
T ss_pred HHHHHHHH-------hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999977 55999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCHHHHHHH
Q psy8160 245 DFSNNSNREDYHQA 258 (324)
Q Consensus 245 ~~~~~~~~~~A~~~ 258 (324)
+...++ +++|.+.
T Consensus 395 ~~~~~~-~~~a~~~ 407 (457)
T 1kt0_A 395 QKKAKE-HNERDRR 407 (457)
T ss_dssp HHHHHH-HHHHHHH
T ss_pred HHHHHH-HHHHHHH
Confidence 999999 9888664
No 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.61 E-value=4.6e-14 Score=100.62 Aligned_cols=114 Identities=12% Similarity=0.098 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG 201 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 201 (324)
...++.+|.++...|++++|+..|++++..+ |.+ ..++..+|.++.. .+++++|+..++++++.+|.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~~a~~~~~-------~~~~~~A~~~~~~~~~~~~~~~ 72 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD--PHN--HVLYSNRSAAYAK-------KGDYQKAYEDGCKTVDLKPDWG 72 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCc--HHHHHHHHHHHHh-------hccHHHHHHHHHHHHHhCcccH
Confidence 4678999999999999999999999999998 877 4599999999976 4599999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHh
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDF 246 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 246 (324)
.+++.+|.++...|++++|+..|++++..+|+++.++..++.+..
T Consensus 73 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 73 KGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999988753
No 146
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.61 E-value=5.4e-15 Score=112.59 Aligned_cols=122 Identities=13% Similarity=0.058 Sum_probs=105.2
Q ss_pred cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc--------CC--------CCCchhhHHHHHHHHHHHhhhhhcccchhH
Q psy8160 120 TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE--------DD--------LPVHLKADICRQLGWMYHCIDTLGEKSHRE 183 (324)
Q Consensus 120 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~--------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 183 (324)
..+..+...|..++..|++++|+..|++++.. +. .|.. ..++.++|.++.. .+++
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~nla~~~~~-------~~~~ 79 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKN--IPLYANMSQCYLN-------IGDL 79 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTH--HHHHHHHHHHHHH-------HTCH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH--HHHHHHHHHHHHh-------cCcH
Confidence 34577889999999999999999999999987 10 0333 5699999999977 5599
Q ss_pred HHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCH-HHHHHhHHHHhhcCC
Q psy8160 184 TLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA-DTWCSIGNKDFSNNS 250 (324)
Q Consensus 184 ~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~~~ 250 (324)
++|+..++++++++|.++.+|+.+|.++..+|++++|+..|++++.++|+++ .+...++.+....++
T Consensus 80 ~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 80 HEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 667778777665544
No 147
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.61 E-value=1.6e-14 Score=105.33 Aligned_cols=105 Identities=12% Similarity=0.099 Sum_probs=95.4
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcc---cHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTF---TKLEVR 125 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~---~~~~~~ 125 (324)
.+.++..+|..++..|+|++|+.+|++++ ++|++..++..+|.++...|++++|++.+++++...|.... ..+.++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 45578899999999999999999999999 99999999999999999999999999999999988765543 345689
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhcCCCCC
Q psy8160 126 FHIAHLHEVQRKYKTAKDSYEQLLKEDDLPV 156 (324)
Q Consensus 126 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 156 (324)
.++|.++...|++++|++.|++++... |+
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~--~~ 115 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEF--RD 115 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS--CC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC--cC
Confidence 999999999999999999999999987 54
No 148
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.60 E-value=9e-14 Score=105.71 Aligned_cols=132 Identities=14% Similarity=0.097 Sum_probs=115.1
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
....++.+|.++...|++++|+..|++++ .+|.+..++..+|.++...|++++|+..+++++...|... .+++.+
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~~ 87 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI----KGYYRR 87 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH----HHHHHH
Confidence 35678999999999999999999999999 9999999999999999999999999999999999988765 789999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHH--HHhhhhhcccchhHHHHHHHHHHHhhh
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWM--YHCIDTLGEKSHRETLAIHCLQKSIEA 196 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~A~~~~~~al~~ 196 (324)
|.++...|++++|+..|++++..+ |.+.. ++..++.+ +.. .+++++|+..+.++...
T Consensus 88 a~~~~~~~~~~~A~~~~~~a~~~~--p~~~~--~~~~~~~~~~~~~-------~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 88 AASNMALGKFRAALRDYETVVKVK--PHDKD--AKMKYQECNKIVK-------QKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCHH--HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC--CCCHH--HHHHHHHHHHHHH-------HHHHHHHHHcccchHHH
Confidence 999999999999999999999998 87744 55444443 543 45899999999887654
No 149
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.59 E-value=7.3e-14 Score=100.61 Aligned_cols=117 Identities=26% Similarity=0.384 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG 201 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 201 (324)
..+++.+|.++...|++++|+..|++++... |.+ ..++..+|.++.. .+++++|+.++++++...|.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~la~~~~~-------~~~~~~A~~~~~~~~~~~~~~~ 77 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNN--AEAWYNLGNAYYK-------QGDYDEAIEYYQKALELDPNNA 77 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCc--HHHHHHHHHHHHH-------hCCHHHHHHHHHHHHHhCCccH
Confidence 4678999999999999999999999999988 776 4589999999976 4599999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcC
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNN 249 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 249 (324)
.+++.+|.++...|++++|+..|++++..+|+++.++..+|.++...|
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 78 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999987654
No 150
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.59 E-value=1.2e-14 Score=104.92 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHH
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQ 202 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 202 (324)
..++.+|..+...|++++|+..|++++..+ |++ +.+++.+|.++.. .|++++|+..|+++++++|+++.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~--~~a~~~lg~~~~~-------~g~~~~A~~~~~~al~l~P~~~~ 86 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKE--PER--EEAWRSLGLTQAE-------NEKDGLAIIALNHARMLDPKDIA 86 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCC--HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCCHH
Confidence 347888999999999999999999999999 888 5599999999977 55999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH
Q psy8160 203 SLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNAD 236 (324)
Q Consensus 203 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 236 (324)
+++.+|.++...|++++|+..|+++++.+|+++.
T Consensus 87 ~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 87 VHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999999999999999999999998754
No 151
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.59 E-value=7.5e-15 Score=106.10 Aligned_cols=103 Identities=10% Similarity=0.036 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH
Q psy8160 161 DICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCS 240 (324)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 240 (324)
..++.+|..+.. .|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+|+.
T Consensus 18 ~~~~~~g~~~~~-------~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~ 90 (121)
T 1hxi_A 18 ENPMEEGLSMLK-------LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA 90 (121)
T ss_dssp SCHHHHHHHHHH-------TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhHHHHHHHHHH-------cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 367788888866 5599999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhh
Q psy8160 241 IGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKH 296 (324)
Q Consensus 241 lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 296 (324)
+|.++...|+ +++ |+..|+++++.+|+++.
T Consensus 91 la~~~~~~g~------------------------~~~--A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 91 LAVSHTNEHN------------------------ANA--ALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHH------------------------HHH--HHHHHHHHHC-------
T ss_pred HHHHHHHcCC------------------------HHH--HHHHHHHHHHhCcCCCC
Confidence 9988888887 455 77788888888887653
No 152
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.58 E-value=1.6e-14 Score=107.54 Aligned_cols=111 Identities=14% Similarity=0.115 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCC-------ch---hhHHHHHHHHHHHhhhhhcccchhHHHHHHHHH
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPV-------HL---KADICRQLGWMYHCIDTLGEKSHRETLAIHCLQ 191 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-------~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~ 191 (324)
+..+.+.|..++..|++++|+..|++++..+ |+ +. .+.+|.++|.++.. .|++++|+.+++
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~-------Lgr~~eAl~~~~ 81 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAG-------LRSFDEALHSAD 81 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHH-------TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHH-------CCCHHHHHHHHH
Confidence 4678889999999999999999999999998 66 22 13489999999977 559999999999
Q ss_pred HHhhh-------CCccHHHH----HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHh
Q psy8160 192 KSIEA-------DPKSGQSL----YLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSI 241 (324)
Q Consensus 192 ~al~~-------~~~~~~~~----~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 241 (324)
+++++ +|+++.+| +++|.++..+|++++|+..|+++++++|++......+
T Consensus 82 kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 82 KALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp HHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred HHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 99999 99999999 9999999999999999999999999999886544333
No 153
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.58 E-value=2.5e-14 Score=105.35 Aligned_cols=117 Identities=15% Similarity=0.181 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG 201 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 201 (324)
+..++.+|.++...|++++|+..|++++..+ |.+ +.++..+|.++.. .+++++|+..++++++.+|.++
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~--~~~~~~l~~~~~~-------~~~~~~A~~~~~~al~~~p~~~ 77 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLV--AVYYTNRALCYLK-------MQQPEQALADCRRALELDGQSV 77 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCc--HHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHhCchhH
Confidence 4789999999999999999999999999999 887 4599999999977 5599999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-----CHHHHHHhHHHHhhcC
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG-----NADTWCSIGNKDFSNN 249 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~~ 249 (324)
.+++.+|.++...|++++|+..|++++.++|+ +..++..+..+.....
T Consensus 78 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~ 130 (137)
T 3q49_B 78 KAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW 130 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988 6777777777665443
No 154
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.57 E-value=1.4e-13 Score=114.02 Aligned_cols=206 Identities=8% Similarity=0.013 Sum_probs=157.5
Q ss_pred HHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy8160 70 ALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQL 148 (324)
Q Consensus 70 A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 148 (324)
|++.|++.+ ..+........+|.++...|++++|++.+.+.+...|. ....+++..++.++..+|+.+.|.+.+++.
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~--~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEA--EGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCS--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC--cCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 677788777 54455566678999999999999999999999877651 233588889999999999999999999999
Q ss_pred HhcCCCCCc--hhhHHHHHH--HHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc--cHHHHHHHHHHHHHcCCHHHHHH
Q psy8160 149 LKEDDLPVH--LKADICRQL--GWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK--SGQSLYLLGRCFAAVGKVHDAFL 222 (324)
Q Consensus 149 l~~~~~~~~--~~~~~~~~l--~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~lg~~~~~~~~~~~A~~ 222 (324)
.+.+ |+. ..-.+...+ +|+.... | .+++++|..+|+++.+..|. ++..+++ ++..+|++++|..
T Consensus 163 ~~~~--~d~~~~~d~~l~~Laea~v~l~~---g--~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~ 232 (310)
T 3mv2_B 163 TNAI--EDTVSGDNEMILNLAESYIKFAT---N--KETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQG 232 (310)
T ss_dssp HHHS--CHHHHHHHHHHHHHHHHHHHHHH---T--CSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHH
T ss_pred HhcC--ccccccchHHHHHHHHHHHHHHh---C--CccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHH
Confidence 8888 720 001244444 5555441 2 23799999999999888886 3344444 8999999999999
Q ss_pred HHHHHHcc----------CCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCC
Q psy8160 223 AYRNSVEK----------SEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIA 292 (324)
Q Consensus 223 ~~~~al~~----------~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p 292 (324)
.++.+++. +|+++++..++..+....|+ + |.++++++.+..|
T Consensus 233 ~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--------------------------~--a~~l~~qL~~~~P 284 (310)
T 3mv2_B 233 IVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--------------------------D--TEDLTNQLVKLDH 284 (310)
T ss_dssp HHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--------------------------T--THHHHHHHHHTTC
T ss_pred HHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--------------------------H--HHHHHHHHHHhCC
Confidence 99988776 48888887777766655544 6 8999999999999
Q ss_pred ChhhhhhchhhhccCChhhHHHHHHHHh
Q psy8160 293 SCKHINNNKDFSNNSNREDYHQALNKYR 320 (324)
Q Consensus 293 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 320 (324)
++|.+..... ....|+++..+|.
T Consensus 285 ~hp~i~d~~~-----k~~~Fd~~~~ky~ 307 (310)
T 3mv2_B 285 EHAFIKHHQE-----IDAKFDELVRKYD 307 (310)
T ss_dssp CCHHHHHHHH-----HHHHHHHHHHTCC
T ss_pred CChHHHHHHH-----HHHHHHHHHHHhc
Confidence 9998866443 2467888887774
No 155
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.57 E-value=4.5e-15 Score=116.99 Aligned_cols=88 Identities=16% Similarity=0.109 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHH
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQ 202 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 202 (324)
.++.++|.++...|++++|+..+++++..+ |.+ ..+++.+|.++.. .+++++|+.+|+++++++|.++.
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~--~~~~~~lg~~~~~-------~~~~~~A~~~~~~al~~~p~~~~ 157 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID--KNN--VKALYKLGVANMY-------FGFLEEAKENLYKAASLNPNNLD 157 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTC--HHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccc--HHHHHHHHHHHHH-------cccHHHHHHHHHHHHHHCCCcHH
Confidence 678999999999999999999999999998 887 4599999999977 45999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHH
Q psy8160 203 SLYLLGRCFAAVGKVHDAF 221 (324)
Q Consensus 203 ~~~~lg~~~~~~~~~~~A~ 221 (324)
++..++.++...++..++.
T Consensus 158 ~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 158 IRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999998888777666
No 156
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.57 E-value=3.7e-15 Score=110.63 Aligned_cols=107 Identities=9% Similarity=0.088 Sum_probs=93.3
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHccCCCCHHHHHHhHHHHhhcC
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKV----------HDAFLAYRNSVEKSEGNADTWCSIGNKDFSNN 249 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 249 (324)
.+.+++|+..++++++++|.++++|+++|.++...+++ ++|+..|++|++++|+++++|+++|.+|...|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 44899999999999999999999999999999999875 59999999999999999999999999999887
Q ss_pred C---CHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhh
Q psy8160 250 S---NREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFS 304 (324)
Q Consensus 250 ~---~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 304 (324)
. .+..| .|++++ |+.+|++|++++|+++..+..+...
T Consensus 95 ~l~P~~~~a----------------~g~~~e--A~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 95 FLTPDETEA----------------KHNFDL--ATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp HHCCCHHHH----------------HHHHHH--HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccCcchhhh----------------hccHHH--HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3 02222 356889 9999999999999998877776543
No 157
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.56 E-value=1.7e-14 Score=109.89 Aligned_cols=112 Identities=12% Similarity=0.142 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhh------------------CCccHHHHHHHHHHHHHcCCHHHHH
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA------------------DPKSGQSLYLLGRCFAAVGKVHDAF 221 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------------------~~~~~~~~~~lg~~~~~~~~~~~A~ 221 (324)
+..+...|..++. .+++++|+..|.+++.. +|.+..+|+++|.++..+|++++|+
T Consensus 11 a~~~~~~G~~~~~-------~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~ 83 (162)
T 3rkv_A 11 VEALRQKGNELFV-------QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE 83 (162)
T ss_dssp HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6688999999977 55999999999999998 7777799999999999999999999
Q ss_pred HHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChh-hhhhc
Q psy8160 222 LAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCK-HINNN 300 (324)
Q Consensus 222 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~ 300 (324)
..+++++.++|+++.+|+.+|.++...|+ +++ |+..|+++++++|+++ .+...
T Consensus 84 ~~~~~al~~~p~~~~a~~~~g~~~~~~g~------------------------~~~--A~~~~~~al~l~p~~~~~~~~~ 137 (162)
T 3rkv_A 84 ETSSEVLKREETNEKALFRRAKARIAAWK------------------------LDE--AEEDLKLLLRNHPAAASVVARE 137 (162)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHTTC------------------------HHH--HHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHhc------------------------HHH--HHHHHHHHHhcCCCCHHHHHHH
Confidence 99999999999999999999988888888 556 8889999999999998 66666
Q ss_pred hhhh
Q psy8160 301 KDFS 304 (324)
Q Consensus 301 l~~~ 304 (324)
+..+
T Consensus 138 l~~~ 141 (162)
T 3rkv_A 138 MKIV 141 (162)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 158
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.56 E-value=9.7e-14 Score=122.53 Aligned_cols=198 Identities=10% Similarity=0.038 Sum_probs=95.6
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHh-cCCCCch-----------------hhHHHHHHHHhcccHHHHHHHHHHHHHhcC
Q psy8160 54 HLRLGLMFKVNNEYDSALKHLTLCL-IDASPCT-----------------FTKLEGLMFKVNNEYDSALKHLTLCLIDAS 115 (324)
Q Consensus 54 ~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~-----------------~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 115 (324)
.+..|..+...|+|++|++.|.+++ .+|.... +...+|.+|..+|++++|++.+++++...+
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555 4443322 123345555555555555555555544332
Q ss_pred CCcc--cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC--CCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHH
Q psy8160 116 PCTF--TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDL--PVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQ 191 (324)
Q Consensus 116 ~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~ 191 (324)
.... ....+...+|.++...|++++|+..+++++..... .....+.++..+|.++.. .|++++|+.+++
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-------~g~~~~A~~~l~ 159 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQ-------KKQYKDSLALIN 159 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHH-------HTCHHHHHHHHH
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH-------ccChHHHHHHHH
Confidence 2211 11123444455555555555555555555543200 111124455555555544 335555555555
Q ss_pred HHhhh------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC---C----HHHHHHhHHHHhhcCCCHHHHHHH
Q psy8160 192 KSIEA------DPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG---N----ADTWCSIGNKDFSNNSNREDYHQA 258 (324)
Q Consensus 192 ~al~~------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~----~~~~~~lg~~~~~~~~~~~~A~~~ 258 (324)
+++.. .|....++..+|.+|...|++++|...+++++...+. . ...+..+|.++...++ +.+|..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-y~~A~~~ 238 (434)
T 4b4t_Q 160 DLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKD-YKTAFSY 238 (434)
T ss_dssp HHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSC-HHHHHHH
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHh-HHHHHHH
Confidence 55432 1222345555566666666666666665555543221 1 2334455555555555 5555555
Q ss_pred H
Q psy8160 259 L 259 (324)
Q Consensus 259 ~ 259 (324)
|
T Consensus 239 ~ 239 (434)
T 4b4t_Q 239 F 239 (434)
T ss_dssp H
T ss_pred H
Confidence 5
No 159
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.55 E-value=5.9e-15 Score=132.03 Aligned_cols=140 Identities=16% Similarity=0.057 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHH
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQ 202 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 202 (324)
..+..+|.++...|++++|+..|+++++.+ |.+ +.++..+|.++.. .+++++|+..++++++++|.++.
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~--p~~--~~~~~~lg~~~~~-------~g~~~~A~~~~~~al~l~p~~~~ 75 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELN--PSN--AIYYGNRSLAYLR-------TECYGYALGDATRAIELDKKYIK 75 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHSCTTCHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--Ccc--HHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHhCCCCHH
Confidence 445667788888899999999999999988 877 5589999999877 45899999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHH--HhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchH
Q psy8160 203 SLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNK--DFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNN 280 (324)
Q Consensus 203 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~--~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A 280 (324)
+++.+|.++..+|++++|+..|+++++++|+++.++..++.+ +...|+ +++ |
T Consensus 76 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~------------------------~~~--A 129 (477)
T 1wao_1 76 GYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA------------------------FER--A 129 (477)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHH------------------------HCC--C
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH------------------------HHH--H
Confidence 999999999999999999999999999999988888887776 555455 566 7
Q ss_pred HHHHH-----------HhhhcCCChhhhhh
Q psy8160 281 RQCYN-----------SYSTSIASCKHINN 299 (324)
Q Consensus 281 ~~~~~-----------~al~~~p~~~~~~~ 299 (324)
++.++ ++++++|+......
T Consensus 130 ~~~~~~~~~~~~~~~~~al~~~~~~~~~~~ 159 (477)
T 1wao_1 130 IAGDEHKRSVVDSLDIESMTIEDEYSGPKL 159 (477)
T ss_dssp ------CCSTTTCCTTSSCCCCTTCCSCCC
T ss_pred hccccccchhHhhhhhhhcccccccccccc
Confidence 77777 78888887655443
No 160
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.55 E-value=4.2e-13 Score=111.27 Aligned_cols=191 Identities=13% Similarity=-0.043 Sum_probs=150.8
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCC--CCchhhHHHHHHHHhcccHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDA--SPCTFTKLEGLMFKVNNEYDSALKHL 107 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~--~~~~~~~~la~~~~~~~~~~~A~~~~ 107 (324)
..|++.|++.++..+. ...+++.+|.++...|++++|++++.+.+ .+| .+..+....+.++...|+.+.|.+.+
T Consensus 83 ~~a~~~l~~l~~~~~~---~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l 159 (310)
T 3mv2_B 83 TKNIEELENLLKDKQN---SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIF 159 (310)
T ss_dssp TTCCHHHHHTTTTSCC---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHhcCCC---CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5588889888876532 24457899999999999999999999999 776 88888899999999999999999999
Q ss_pred HHHHHhcCCCcccHHHHHHHHH--HHHHHhh--cHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhH
Q psy8160 108 TLCLIDASPCTFTKLEVRFHIA--HLHEVQR--KYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRE 183 (324)
Q Consensus 108 ~~~l~~~~~~~~~~~~~~~~la--~~~~~~~--~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 183 (324)
+++....|+.......+..+++ ++....| ++.+|...|+++.... |+......+.+ ++.. .|++
T Consensus 160 ~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln---~~~~-------~g~~ 227 (310)
T 3mv2_B 160 DNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLN---LHLQ-------QRNI 227 (310)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHH---HHHH-------HTCH
T ss_pred HHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHH---HHHH-------cCCH
Confidence 9988776621111114555654 4455556 9999999999988777 65211223333 4544 4599
Q ss_pred HHHHHHHHHHhhh----------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q psy8160 184 TLAIHCLQKSIEA----------DPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTW 238 (324)
Q Consensus 184 ~~A~~~~~~al~~----------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 238 (324)
++|...++.+++. +|++++++.++..+....|+ +|.++++++.+.+|++|.+.
T Consensus 228 ~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 228 AEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 9999999988776 58899999999999999998 89999999999999998664
No 161
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.55 E-value=4.3e-15 Score=132.35 Aligned_cols=181 Identities=15% Similarity=0.121 Sum_probs=138.6
Q ss_pred HHHHHHHHH----HhccCCCcccchHHHHHHHHH------------HHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHH
Q psy8160 31 IKAIKTFQQ----LLYVDPSYLRANEVHLRLGLM------------FKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLM 93 (324)
Q Consensus 31 ~~A~~~~~~----~l~~~p~~~~~~~~~~~lg~~------------~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~ 93 (324)
+.|+..+.+ ++.++|.+. |...|.. ....+++++|+..|+.++ .+|.....+..+|..
T Consensus 203 e~al~~~~~ge~~~l~i~P~~a-----y~~~g~~~~~ip~~~~l~y~~~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~ 277 (457)
T 1kt0_A 203 DKALEKMQREEQCILYLGPRYG-----FGEAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAIVKEKGTV 277 (457)
T ss_dssp HHHHTTCCBTCEEEEEECGGGT-----TCSSCBGGGTBCTTCCEEEEEEEEEEECCCCGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCEEEEEECcccc-----cCCCCCcccCCCCCCEEEEEhhhhhcccCcchhhcCHHHHHHHHHHHHHHHHH
Confidence 677777766 677776531 1111111 114456677777777777 777777788888888
Q ss_pred HHhcccHHHHHHHHHHHHHhcCCCc-----------ccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHH
Q psy8160 94 FKVNNEYDSALKHLTLCLIDASPCT-----------FTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADI 162 (324)
Q Consensus 94 ~~~~~~~~~A~~~~~~~l~~~~~~~-----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 162 (324)
+...|+|++|+..|++++...|... .....+++++|.++..+|++++|+.+|++++.++ |++ ..+
T Consensus 278 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~--~~a 353 (457)
T 1kt0_A 278 YFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD--SAN--EKG 353 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTC--HHH
T ss_pred HHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--Ccc--HHH
Confidence 8888888888888888888776652 0124789999999999999999999999999999 888 459
Q ss_pred HHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHH-HHHH
Q psy8160 163 CRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLA-YRNS 227 (324)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~-~~~a 227 (324)
++++|.++.. .+++++|+.+|+++++++|.+..++..++.++...+++++|... |.+.
T Consensus 354 ~~~~g~a~~~-------~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 354 LYRRGEAQLL-------MNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHH-------TTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-------ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999977 55999999999999999999999999999999999999887753 4443
No 162
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2e-13 Score=101.64 Aligned_cols=119 Identities=18% Similarity=0.080 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCch-hhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc
Q psy8160 121 KLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHL-KADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK 199 (324)
Q Consensus 121 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 199 (324)
....++.+|..+...|++++|+..|++++..+ |++. ...++..+|.++.. .+++++|+..++++++.+|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~-------~~~~~~A~~~~~~~~~~~~~ 97 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLK-------LEDYDKAETEASKAIEKDGG 97 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHH-------HccHHHHHHHHHHHHhhCcc
Confidence 35789999999999999999999999999988 7641 14589999999977 55999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhc
Q psy8160 200 SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSN 248 (324)
Q Consensus 200 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 248 (324)
++.+++.+|.++...|++++|+..|++++.++|+++.++..++.+....
T Consensus 98 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPS 146 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCSC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999998876543
No 163
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.54 E-value=1.5e-13 Score=104.72 Aligned_cols=115 Identities=14% Similarity=0.120 Sum_probs=104.0
Q ss_pred ccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHH
Q psy8160 48 LRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRF 126 (324)
Q Consensus 48 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 126 (324)
+...+.++.+|.+++..|++++|+.+|++++ .+|.+..++..+|.++...|++++|+..|++++...|... .+++
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~ 83 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYS----KAWS 83 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH----HHHH
Confidence 3456789999999999999999999999999 9999999999999999999999999999999999988875 8999
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHH
Q psy8160 127 HIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMY 170 (324)
Q Consensus 127 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~ 170 (324)
.+|.++...|++++|+..|++++..+ |++.. ++...+...
T Consensus 84 ~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~--~~~~~~l~~ 123 (164)
T 3sz7_A 84 RLGLARFDMADYKGAKEAYEKGIEAE--GNGGS--DAMKRGLET 123 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH--SSSCC--HHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC--CCchH--HHHHHHHHH
Confidence 99999999999999999999999999 87744 555555444
No 164
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.54 E-value=1.2e-13 Score=100.87 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=66.6
Q ss_pred ccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHH
Q psy8160 48 LRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRF 126 (324)
Q Consensus 48 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 126 (324)
+.....++.+|.++...|++++|+..|++++ .+|.+..++..+|.++...|++++|+..+++++...|... .+++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~ 88 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI----KGYT 88 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH----HHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCch----HHHH
Confidence 4456678888888888888888888888777 6666655555555555555555555555555554444332 4445
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHH
Q psy8160 127 HIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMY 170 (324)
Q Consensus 127 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~ 170 (324)
.+|.++...|++++|+..|++++..+ |.+ ..++..++.++
T Consensus 89 ~la~~~~~~~~~~~A~~~~~~~~~~~--p~~--~~~~~~l~~~~ 128 (133)
T 2lni_A 89 RKAAALEAMKDYTKAMDVYQKALDLD--SSC--KEAADGYQRCM 128 (133)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--GGG--THHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhC--CCc--hHHHHHHHHHH
Confidence 55555555555555555555555444 433 22444444444
No 165
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.54 E-value=1.9e-13 Score=99.43 Aligned_cols=118 Identities=16% Similarity=0.134 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh-hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc-
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK-ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS- 200 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~- 200 (324)
+.++.+|.++...|++++|+..|++++..+ |++.. ..+++.+|.++.. .+++++|+..|++++..+|++
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~-------~~~~~~A~~~~~~~~~~~p~~~ 73 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYA-------TRNFQLAEAQFRDLVSRYPTHD 73 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHH-------hccHHHHHHHHHHHHHHCCCCc
Confidence 357889999999999999999999999988 76631 3589999999977 559999999999999999999
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcC
Q psy8160 201 --GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNN 249 (324)
Q Consensus 201 --~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~ 249 (324)
+.+++.+|.++...|++++|+..|++++...|+++.+...+..+-...+
T Consensus 74 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 74 KAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999999888777666554443
No 166
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.54 E-value=9.9e-14 Score=100.77 Aligned_cols=119 Identities=13% Similarity=0.115 Sum_probs=74.8
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
...+++.+|.++...|++++|+..|++++ .+|.+. .++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------------------------------~~~~~~ 52 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA--------------------------------------VYFCNR 52 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--------------------------------------HHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH--------------------------------------HHHHHH
Confidence 44566777777777777777777777665 555443 455566
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
|.++...|++++|+..+++++... |++ ..++..+|.++.. .+++++|+.+++++++.+|.++.++..+|
T Consensus 53 a~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~~~~~~~~-------~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 121 (131)
T 2vyi_A 53 AAAYSKLGNYAGAVQDCERAICID--PAY--SKAYGRMGLALSS-------LNKHVEAVAYYKKALELDPDNETYKSNLK 121 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHhhchHHHHHHHHHHHhcC--ccC--HHHHHHHHHHHHH-------hCCHHHHHHHHHHHHhcCccchHHHHHHH
Confidence 666666666666666666666665 554 3366666666654 33666666666666666666666666666
Q ss_pred HHHHHcCCH
Q psy8160 209 RCFAAVGKV 217 (324)
Q Consensus 209 ~~~~~~~~~ 217 (324)
.++...|++
T Consensus 122 ~~~~~~~~~ 130 (131)
T 2vyi_A 122 IAELKLREA 130 (131)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHhcC
Confidence 666666553
No 167
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.54 E-value=3.9e-13 Score=105.77 Aligned_cols=165 Identities=10% Similarity=0.044 Sum_probs=121.8
Q ss_pred HHhccHHHHHHHHHHHhcCC-CCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCC--CcccHHHHHHHHHHHHHHhhcH
Q psy8160 62 KVNNEYDSALKHLTLCLIDA-SPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASP--CTFTKLEVRFHIAHLHEVQRKY 138 (324)
Q Consensus 62 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~~~~~la~~~~~~~~~ 138 (324)
+..|++++|.+.++.+..+| ....++..+|.++...|++++|+.++++++..... .......++..+|.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45677888887555545343 55666677788888888888888888888764222 2224457899999999999999
Q ss_pred HHHHHHHHHHHhcCC-CCCc--hhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc--c----HHHHHHHHH
Q psy8160 139 KTAKDSYEQLLKEDD-LPVH--LKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK--S----GQSLYLLGR 209 (324)
Q Consensus 139 ~~A~~~~~~al~~~~-~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~----~~~~~~lg~ 209 (324)
++|+..+++++.... .++. ..+.++..+|.++.. .|++++|+.++++++...+. + ..++..+|.
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~-------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 155 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALH-------FGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGD 155 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHH-------hCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 999999999998721 1322 236688999999977 45999999999999875422 1 245689999
Q ss_pred HHHHcCCHHHHHHHHHHHHccCCC
Q psy8160 210 CFAAVGKVHDAFLAYRNSVEKSEG 233 (324)
Q Consensus 210 ~~~~~~~~~~A~~~~~~al~~~p~ 233 (324)
++...|++++|+..+++++.+...
T Consensus 156 ~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 156 LAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999987543
No 168
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.52 E-value=2.5e-14 Score=122.36 Aligned_cols=141 Identities=11% Similarity=0.059 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh---------------hHHHHHHHHHHHhhhhhcccchhHHHH
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK---------------ADICRQLGWMYHCIDTLGEKSHRETLA 186 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~~~~~~~~A 186 (324)
+..+..+|..+...|++++|+..|++++... |.+.. ..++.++|.++.. .+++++|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~-------~g~~~~A 249 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIK-------LKRYDEA 249 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHT-------TTCCHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHH-------cCCHHHH
Confidence 3567788888888888888888888888877 65420 1267777777765 4477778
Q ss_pred HHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhH
Q psy8160 187 IHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLG 266 (324)
Q Consensus 187 ~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg 266 (324)
+.+++++++.+|.++.+|+.+|.++..+|++++|+..|++++.++|+++.++..++.+.....
T Consensus 250 ~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~----------------- 312 (338)
T 2if4_A 250 IGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEK----------------- 312 (338)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-----------------
Confidence 888888888888778888888888888888888888888888888877777777766644333
Q ss_pred HHHHHcCCCCcchHHHHHHHhhhcCCChhh
Q psy8160 267 DFLVINNIPTSNNNRQCYNSYSTSIASCKH 296 (324)
Q Consensus 267 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 296 (324)
+..+. +...|.+++...|+++.
T Consensus 313 ------~~~~~--a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 313 ------ALYQK--QKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ------------------------------
T ss_pred ------HHHHH--HHHHHHHhhCCCCCCCC
Confidence 24567 88889999999998764
No 169
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.52 E-value=1.5e-13 Score=118.76 Aligned_cols=124 Identities=14% Similarity=0.159 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHh----------------cCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHH
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLK----------------EDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETL 185 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~----------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 185 (324)
...+..+|..+...|++++|+..|++++. .+ |.. ..++.++|.++.. .+++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~--~~~--~~~~~nla~~~~~-------~g~~~~ 291 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ--PVA--LSCVLNIGACKLK-------MSDWQG 291 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH--HHH--HHHHHHHHHHHHH-------TTCHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH--HHH--HHHHHHHHHHHHh-------ccCHHH
Confidence 35688889999999999999999999998 33 433 5699999999977 559999
Q ss_pred HHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHH
Q psy8160 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQ 257 (324)
Q Consensus 186 A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~ 257 (324)
|+.+++++++++|.++.+++.+|.++..+|++++|+..|+++++++|+++.++..++.++...++ ++++.+
T Consensus 292 A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~-~~~a~k 362 (370)
T 1ihg_A 292 AVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKA-QKDKEK 362 (370)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH-HHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998 887754
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.52 E-value=7.2e-14 Score=102.87 Aligned_cols=105 Identities=11% Similarity=-0.039 Sum_probs=85.6
Q ss_pred hhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHHH
Q psy8160 195 EADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-----------NKYR 263 (324)
Q Consensus 195 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~ 263 (324)
..+|.++..++.+|.+++..|++++|+..|++++..+|+++.+|..+|.++...|+ +++|+..| .+|+
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~ 81 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ-PEQALADCRRALELDGQSVKAHF 81 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHhCchhHHHHH
Confidence 34567788888888888888888888888888888888888888888888888888 88888887 7788
Q ss_pred hhHHHHHHcCCCCcchHHHHHHHhhhcCCC-----hhhhhhchh
Q psy8160 264 DLGDFLVINNIPTSNNNRQCYNSYSTSIAS-----CKHINNNKD 302 (324)
Q Consensus 264 ~lg~~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~l~ 302 (324)
.+|.++...|++++ |+..|+++++++|+ ++.+...+.
T Consensus 82 ~l~~~~~~~~~~~~--A~~~~~~a~~~~p~~~~~~~~~~~~~l~ 123 (137)
T 3q49_B 82 FLGQCQLEMESYDE--AIANLQRAYSLAKEQRLNFGDDIPSALR 123 (137)
T ss_dssp HHHHHHHHTTCHHH--HHHHHHHHHHHHHHTTCCCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHH--HHHHHHHHHHHChhHHHHHHHHHHHHHH
Confidence 88888888888999 99999999999998 444444443
No 171
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.52 E-value=1.8e-13 Score=107.73 Aligned_cols=153 Identities=15% Similarity=0.184 Sum_probs=107.0
Q ss_pred HhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCC--CchhhHHHHHHHHHHHh
Q psy8160 95 KVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLP--VHLKADICRQLGWMYHC 172 (324)
Q Consensus 95 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~l~~~~~~ 172 (324)
...|++++|++.++.+.. .| .....++..+|.++...|++++|+..+++++...... ....+.++..+|.++..
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 78 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HP---ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM 78 (203)
T ss_dssp ----CHHHHHHHHHHHHT-ST---TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhcC-Ch---HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 457899999998776643 22 2457889999999999999999999999998753211 11237788888988876
Q ss_pred hhhhcccchhHHHHHHHHHHHhhh---CC----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC------HHHHH
Q psy8160 173 IDTLGEKSHRETLAIHCLQKSIEA---DP----KSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN------ADTWC 239 (324)
Q Consensus 173 ~~~~~~~~~~~~~A~~~~~~al~~---~~----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~ 239 (324)
.|++++|+.+++++++. .+ ....++..+|.++...|++++|+..+++++.+.+.. ..++.
T Consensus 79 -------~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 151 (203)
T 3gw4_A 79 -------AGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFR 151 (203)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -------cCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 66999999999999887 33 234678899999999999999999999998753321 12234
Q ss_pred HhHHHHhhcCCCHHHHHHHH
Q psy8160 240 SIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 240 ~lg~~~~~~~~~~~~A~~~~ 259 (324)
.+|.++...|+ +++|+.++
T Consensus 152 ~la~~~~~~g~-~~~A~~~~ 170 (203)
T 3gw4_A 152 GLGDLAQQEKN-LLEAQQHW 170 (203)
T ss_dssp HHHHHHHHTTC-HHHHHHHH
T ss_pred HHHHHHHHCcC-HHHHHHHH
Confidence 45555555555 44444443
No 172
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.52 E-value=1.2e-13 Score=102.43 Aligned_cols=107 Identities=15% Similarity=0.260 Sum_probs=90.3
Q ss_pred HHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhc---ccchhHHHHHHHHHHHhhhCCccHHHHHHHHH
Q psy8160 133 EVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLG---EKSHRETLAIHCLQKSIEADPKSGQSLYLLGR 209 (324)
Q Consensus 133 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~ 209 (324)
.+.+.+++|+..++++++++ |++ ++++.++|.++....... ...+.+++|+..|+++++++|++.++|+++|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~--P~~--aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ 88 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN--PLD--ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC--CCC--HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 56788999999999999999 988 559999999886633211 01235789999999999999999999999999
Q ss_pred HHHHcC-----------CHHHHHHHHHHHHccCCCCHHHHHHhHH
Q psy8160 210 CFAAVG-----------KVHDAFLAYRNSVEKSEGNADTWCSIGN 243 (324)
Q Consensus 210 ~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~lg~ 243 (324)
+|...| ++++|+.+|++|++++|+++..+..+..
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999875 8999999999999999999877666543
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.50 E-value=3.4e-13 Score=97.97 Aligned_cols=117 Identities=14% Similarity=0.145 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc-
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS- 200 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~- 200 (324)
+..++.+|.++...|++++|+..|++++..+ |.+ ..++..+|.++.. .+++++|+.++++++...|.+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~--~~~~~~la~~~~~-------~~~~~~A~~~~~~~~~~~~~~~ 72 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD--PTN--MTYITNQAAVYFE-------KGDYNKCRELCEKAIEVGRENR 72 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--Ccc--HHHHHHHHHHHHH-------hccHHHHHHHHHHHHhhccccc
Confidence 4678999999999999999999999999998 877 4599999999977 459999999999999998877
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCC
Q psy8160 201 ------GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNS 250 (324)
Q Consensus 201 ------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 250 (324)
+.+++.+|.++...|++++|+..|++++...| ++..+..++.+....++
T Consensus 73 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999 68999999888766543
No 174
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.49 E-value=3.9e-14 Score=121.12 Aligned_cols=155 Identities=12% Similarity=0.080 Sum_probs=94.5
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
....++.+|..++..|+|++|+.+|++++ .+|.+. .+...|++.++...+. ..+++++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~-------------~~~~~nl 236 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVK-------------NPCHLNI 236 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHH-------------THHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHH-------------HHHHHHH
Confidence 34578899999999999999999999999 887654 2334555666554321 1478999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
|.++...|++++|+..|++++..+ |++ ..+++++|.++.. .+++++|+.+|+++++++|.++.++..++
T Consensus 237 a~~~~~~g~~~~A~~~~~~al~~~--p~~--~~a~~~lg~a~~~-------~g~~~~A~~~l~~al~l~p~~~~a~~~L~ 305 (338)
T 2if4_A 237 AACLIKLKRYDEAIGHCNIVLTEE--EKN--PKALFRRGKAKAE-------LGQMDSARDDFRKAQKYAPDDKAIRRELR 305 (338)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHT-------TTCHHHHHHHHHHTTC-------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCC--HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 999999999999999999999999 887 4599999999977 55999999999999999999999999999
Q ss_pred HH-HHHcCCHHHHHHHHHHHHccCCCCHH
Q psy8160 209 RC-FAAVGKVHDAFLAYRNSVEKSEGNAD 236 (324)
Q Consensus 209 ~~-~~~~~~~~~A~~~~~~al~~~p~~~~ 236 (324)
.+ ....+..+++...|.+++...|+++.
T Consensus 306 ~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 306 ALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 88 44567788899999999999998764
No 175
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.49 E-value=1.6e-12 Score=93.48 Aligned_cols=114 Identities=25% Similarity=0.351 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIA 129 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la 129 (324)
..+++.+|.++...|++++|++.|++++ .+|.+.. +++.+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------------------------------~~~~la 50 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE--------------------------------------AWYNLG 50 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH--------------------------------------HHHHHH
Confidence 4567777777777777777777777666 5555444 444555
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHH
Q psy8160 130 HLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGR 209 (324)
Q Consensus 130 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~ 209 (324)
.++...|++++|+..|++++... |.+ ..++..+|.++.. .+++++|+..++++++.+|.++.++..+|.
T Consensus 51 ~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~la~~~~~-------~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 119 (125)
T 1na0_A 51 NAYYKQGDYDEAIEYYQKALELD--PNN--AEAWYNLGNAYYK-------QGDYDEAIEYYQKALELDPNNAEAKQNLGN 119 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC--Ccc--HHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 55555555555555555555554 444 2255555555544 235555555555555555555555555555
Q ss_pred HHHH
Q psy8160 210 CFAA 213 (324)
Q Consensus 210 ~~~~ 213 (324)
++..
T Consensus 120 ~~~~ 123 (125)
T 1na0_A 120 AKQK 123 (125)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5443
No 176
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.1e-12 Score=115.78 Aligned_cols=196 Identities=9% Similarity=-0.084 Sum_probs=155.4
Q ss_pred hhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcc-------------cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC
Q psy8160 86 FTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTF-------------TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 86 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~-------------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 152 (324)
.....|.-+...|+|++|++.|.+++...+.... ....++..+|.+|...|++++|++.+.+++...
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3445677888899999999999999987766432 123468899999999999999999999998765
Q ss_pred CCCCch--hhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC------ccHHHHHHHHHHHHHcCCHHHHHHHH
Q psy8160 153 DLPVHL--KADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP------KSGQSLYLLGRCFAAVGKVHDAFLAY 224 (324)
Q Consensus 153 ~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~lg~~~~~~~~~~~A~~~~ 224 (324)
+..... ...+...++.++.. .+++++|+.++++++...+ ....++..+|.++...|++++|+..+
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l 158 (434)
T 4b4t_Q 86 MQFAKSKTVKVLKTLIEKFEQV-------PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALI 158 (434)
T ss_dssp HTSCHHHHHHHHHHHHHHHCSC-------CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHccchHHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHH
Confidence 211111 12345556666533 4489999999999986532 33578899999999999999999999
Q ss_pred HHHHcc------CCCCHHHHHHhHHHHhhcCCCHHHHHHHH------------------HHHHhhHHHHHHcCCCCcchH
Q psy8160 225 RNSVEK------SEGNADTWCSIGNKDFSNNSNREDYHQAL------------------NKYRDLGDFLVINNIPTSNNN 280 (324)
Q Consensus 225 ~~al~~------~p~~~~~~~~lg~~~~~~~~~~~~A~~~~------------------~~~~~lg~~~~~~~~~~~~~A 280 (324)
++++.. .|...+++..+|.+|...|+ +++|...| ..+..+|.++...+++.+ |
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~--A 235 (434)
T 4b4t_Q 159 NDLLREFKKLDDKPSLVDVHLLESKVYHKLRN-LAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKT--A 235 (434)
T ss_dssp HHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHH--H
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHH--H
Confidence 999865 23346789999999999999 99999988 567788999999999999 9
Q ss_pred HHHHHHhhhcC
Q psy8160 281 RQCYNSYSTSI 291 (324)
Q Consensus 281 ~~~~~~al~~~ 291 (324)
..+|.++++..
T Consensus 236 ~~~~~~a~~~~ 246 (434)
T 4b4t_Q 236 FSYFFESFESY 246 (434)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998753
No 177
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.48 E-value=4.4e-13 Score=94.54 Aligned_cols=106 Identities=13% Similarity=0.141 Sum_probs=93.1
Q ss_pred CCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC-
Q psy8160 155 PVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG- 233 (324)
Q Consensus 155 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~- 233 (324)
|++ +.++..+|.++.. .+++++|+.+++++++.+|.++.+++.+|.++...|++++|+..|++++..+|.
T Consensus 3 p~~--~~~~~~~~~~~~~-------~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~ 73 (112)
T 2kck_A 3 DQN--PEEYYLEGVLQYD-------AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDE 73 (112)
T ss_dssp CSS--TTGGGGHHHHHHS-------SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCT
T ss_pred CCc--HHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc
Confidence 555 4488999999976 559999999999999999999999999999999999999999999999999999
Q ss_pred -CHHHHHHhHHHHhhc-CCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChh
Q psy8160 234 -NADTWCSIGNKDFSN-NSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCK 295 (324)
Q Consensus 234 -~~~~~~~lg~~~~~~-~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (324)
++.+|..+|.++... |+ +++ |++++++++...|+++
T Consensus 74 ~~~~~~~~l~~~~~~~~~~------------------------~~~--A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 74 YNKDVWAAKADALRYIEGK------------------------EVE--AEIAEARAKLEHHHHH 111 (112)
T ss_dssp TCHHHHHHHHHHHTTCSSC------------------------SHH--HHHHHHHHGGGCCCCC
T ss_pred chHHHHHHHHHHHHHHhCC------------------------HHH--HHHHHHHHhhcccCCC
Confidence 999988888888888 87 566 7778888888877654
No 178
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.48 E-value=1.9e-12 Score=92.07 Aligned_cols=112 Identities=15% Similarity=0.101 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIA 129 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la 129 (324)
.+.++.+|.++...|++++|+..|++++ .+|.+..++..+|.++...|++++|+..+++++...|... .++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~a 79 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG----KGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH----HHHHHHH
Confidence 4678999999999999999999999999 9999999999999999999999999999999999988765 8899999
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHH
Q psy8160 130 HLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMY 170 (324)
Q Consensus 130 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~ 170 (324)
.++...|++++|+..|++++..+ |++ ..++..++.+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~l~~~~ 116 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHE--ANN--PQLKEGLQNME 116 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC--TTC--HHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHcC--CCC--HHHHHHHHHhh
Confidence 99999999999999999999998 877 34777766654
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.47 E-value=3.7e-14 Score=101.77 Aligned_cols=94 Identities=13% Similarity=0.087 Sum_probs=80.6
Q ss_pred chhHHHHHHHHHHHhhh---CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHH
Q psy8160 180 SHRETLAIHCLQKSIEA---DPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYH 256 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~---~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~ 256 (324)
.|++++|+.+|+++++. +|.++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~------ 76 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGR------ 76 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC------
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC------
Confidence 45899999999999999 688899999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhh
Q psy8160 257 QALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINN 299 (324)
Q Consensus 257 ~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 299 (324)
+++ |+..|+++++..|+++.+..
T Consensus 77 ------------------~~~--A~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 77 ------------------YEQ--GVELLLKIIAETSDDETIQS 99 (117)
T ss_dssp ------------------HHH--HHHHHHHHHHHHCCCHHHHH
T ss_pred ------------------HHH--HHHHHHHHHHhCCCcHHHHH
Confidence 455 77778888888888776644
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.47 E-value=8.2e-14 Score=99.90 Aligned_cols=105 Identities=11% Similarity=0.026 Sum_probs=84.5
Q ss_pred HhhcHHHHHHHHHHHHhcCC-CCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHH
Q psy8160 134 VQRKYKTAKDSYEQLLKEDD-LPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFA 212 (324)
Q Consensus 134 ~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 212 (324)
..|++++|+..|++++.... .|.+ ..++..+|.++.. .+++++|+.+|+++++.+|+++.+++.+|.++.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~--~~~~~~lg~~~~~-------~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 72 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDL--AECYLGLGSTFRT-------LGEYRKAEAVLANGVKQFPNHQALRVFYAMVLY 72 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHH--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccH--HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 46889999999999998830 0544 5699999999977 559999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhh
Q psy8160 213 AVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFS 247 (324)
Q Consensus 213 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 247 (324)
..|++++|+..+++++...|+++........+...
T Consensus 73 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 73 NLGRYEQGVELLLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp HHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 99999999999999999999998876554444433
No 181
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=4.5e-13 Score=99.73 Aligned_cols=107 Identities=9% Similarity=-0.057 Sum_probs=87.1
Q ss_pred hhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHhHHHHhhcCCCHHHHHHHH-----------H
Q psy8160 195 EADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN---ADTWCSIGNKDFSNNSNREDYHQAL-----------N 260 (324)
Q Consensus 195 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~~A~~~~-----------~ 260 (324)
...|.+...++.+|.++...|++++|+..|++++..+|++ +.+|..+|.++...|+ +++|+..| .
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~ 100 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLED-YDKAETEASKAIEKDGGDVK 100 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTSCCHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHhhCccCHH
Confidence 3456677778888888888888888888888888888876 7778888888888888 88887777 6
Q ss_pred HHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhh
Q psy8160 261 KYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFS 304 (324)
Q Consensus 261 ~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 304 (324)
+|+.+|.++...|++++ |+..|+++++++|+++.++..+..+
T Consensus 101 ~~~~~a~~~~~~~~~~~--A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQ--AVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHHHTCHHH--HHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHH--HHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 77888888888888999 9999999999999999888776654
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.46 E-value=2.4e-14 Score=128.11 Aligned_cols=133 Identities=8% Similarity=0.011 Sum_probs=104.5
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWM 169 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~ 169 (324)
+|..+...|++++|++.|++++...|... .++.++|.++..+|++++|+..|+++++.+ |.+ +.++..+|.+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~--~~~~~~lg~~ 83 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNA----IYYGNRSLAYLRTECYGYALGDATRAIELD--KKY--IKGYYRRAAS 83 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTC--HHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCC--HHHHHHHHHH
Confidence 45555666677777777777777766654 788899999999999999999999999988 877 4589999999
Q ss_pred HHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHccCCCCHH
Q psy8160 170 YHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRC--FAAVGKVHDAFLAYR-----------NSVEKSEGNAD 236 (324)
Q Consensus 170 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~--~~~~~~~~~A~~~~~-----------~al~~~p~~~~ 236 (324)
+.. .+++++|+..|+++++.+|+++.++..+|.+ +...|++++|+..++ +++.++|+...
T Consensus 84 ~~~-------~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~ 156 (477)
T 1wao_1 84 NMA-------LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSG 156 (477)
T ss_dssp HHH-------HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCS
T ss_pred HHH-------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccc
Confidence 876 4589999999999999999999999989888 888899999999999 88888877643
Q ss_pred H
Q psy8160 237 T 237 (324)
Q Consensus 237 ~ 237 (324)
.
T Consensus 157 ~ 157 (477)
T 1wao_1 157 P 157 (477)
T ss_dssp C
T ss_pred c
Confidence 3
No 183
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.45 E-value=6.8e-13 Score=93.55 Aligned_cols=102 Identities=16% Similarity=0.127 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc--c
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK--S 200 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--~ 200 (324)
.+++.+|.++...|++++|+..|++++..+ |.+ ..++..+|.++.. .+++++|+.+++++++.+|. +
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~--~~~~~~~a~~~~~-------~~~~~~A~~~~~~a~~~~~~~~~ 75 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEE--SKYWLMKGKALYN-------LERYEEAVDCYNYVINVIEDEYN 75 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHTSCCTTC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCC--HHHHHHHHHHHHH-------ccCHHHHHHHHHHHHHhCcccch
Confidence 567778888888888888888888888887 766 4488888888866 44888888888888888888 8
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHccCCCCH
Q psy8160 201 GQSLYLLGRCFAAV-GKVHDAFLAYRNSVEKSEGNA 235 (324)
Q Consensus 201 ~~~~~~lg~~~~~~-~~~~~A~~~~~~al~~~p~~~ 235 (324)
+.+++.+|.++... |++++|+.++++++...|.++
T Consensus 76 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 76 KDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 88888888888888 888899999988888888653
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.44 E-value=2.9e-12 Score=93.10 Aligned_cols=103 Identities=11% Similarity=0.032 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCc---hhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-IDASPC---TFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~---~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
+++.+|.++...|++++|+..|++++ .+|++. .++..+|.++...|++++|+..|++++...|.+.. ...+++.+
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~~~~l 82 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK-AAGGLLKL 82 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT-HHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc-cHHHHHHH
Confidence 57899999999999999999999999 899988 68888999999999999999999999998887632 23789999
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCch
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHL 158 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 158 (324)
|.++...|++++|+..|++++... |++.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~--p~~~ 110 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQY--PGSD 110 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTSH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCCh
Confidence 999999999999999999999998 8763
No 185
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.44 E-value=1.5e-11 Score=113.58 Aligned_cols=225 Identities=11% Similarity=0.031 Sum_probs=175.1
Q ss_pred HHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHH-HHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHH
Q psy8160 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSAL-KHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLC 110 (324)
Q Consensus 33 A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~-~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 110 (324)
....|++++...|. .+++|+..+......|+.++|. ..|.+++ ..|.+...+...+.+....|+++.|.+.|+++
T Consensus 328 v~~~Ye~aL~~~p~---~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 328 MTYVYMQAAQHVCF---APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHTTT---CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45789999999986 4568999999999999999997 9999999 99999888888999999999999999999999
Q ss_pred HHhc-----------CCCc-------ccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc-CCCCCchhhHHHHHHHHHHH
Q psy8160 111 LIDA-----------SPCT-------FTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE-DDLPVHLKADICRQLGWMYH 171 (324)
Q Consensus 111 l~~~-----------~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~l~~~~~ 171 (324)
+... |.+. .....+|...+.+....|+.+.|...|.++++. . +.. ..++...+.+..
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~--~~~--~~lyi~~A~lE~ 480 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK--LVT--PDIYLENAYIEY 480 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG--GSC--THHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC--CCC--hHHHHHHHHHHH
Confidence 8752 2210 012347888888888899999999999999987 3 222 235655555554
Q ss_pred hhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC---CHHHHHHhHHHHhhc
Q psy8160 172 CIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG---NADTWCSIGNKDFSN 248 (324)
Q Consensus 172 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~ 248 (324)
.. .++.+.|...|+++++..|+++..|...+......|+.+.|...|++++...|+ ....|......-...
T Consensus 481 ~~------~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~ 554 (679)
T 4e6h_A 481 HI------SKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKV 554 (679)
T ss_dssp TT------TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHT
T ss_pred Hh------CCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc
Confidence 31 125889999999999999999999999999888999999999999999998884 344555554444444
Q ss_pred CCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhh
Q psy8160 249 NSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKH 296 (324)
Q Consensus 249 ~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 296 (324)
|+ .+. +.+.++++.+..|+++.
T Consensus 555 G~------------------------~~~--~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 555 GS------------------------LNS--VRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp CC------------------------SHH--HHHHHHHHHHHSTTCCH
T ss_pred CC------------------------HHH--HHHHHHHHHHhCCCCcH
Confidence 44 555 66666666666666543
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.42 E-value=2e-12 Score=97.42 Aligned_cols=144 Identities=17% Similarity=0.168 Sum_probs=104.0
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIA 129 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la 129 (324)
..++..+|.++...|++++|+.++++++ ..+.. ........++..+|
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~--------------------------------~~~~~~~~~~~~l~ 56 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF--------------------------------GDKAAERIAYSNLG 56 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--------------------------------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh--------------------------------CCchHHHHHHHHHH
Confidence 4567777888888888888888777655 22110 11112235788889
Q ss_pred HHHHHhhcHHHHHHHHHHHHhcCCCCC--chhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC------ccH
Q psy8160 130 HLHEVQRKYKTAKDSYEQLLKEDDLPV--HLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP------KSG 201 (324)
Q Consensus 130 ~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~------~~~ 201 (324)
.++...|++++|+..+++++......+ ...+.++..+|.++.. .+++++|+.+++++++..+ ...
T Consensus 57 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 129 (164)
T 3ro3_A 57 NAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL-------LQDYEKAIDYHLKHLAIAQELKDRIGEG 129 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHHHHHccchHhHH
Confidence 999999999999999998887641111 1125578888888866 4589999999999887632 224
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG 233 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 233 (324)
.++..+|.++...|++++|+..+++++++.+.
T Consensus 130 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 130 RACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999887554
No 187
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.40 E-value=1.8e-12 Score=97.62 Aligned_cols=124 Identities=13% Similarity=0.030 Sum_probs=108.9
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccH------HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG------QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG 233 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 233 (324)
+.++..+|.++.. .+++++|+.+++++++..+... .++..+|.++...|++++|+..+++++...+.
T Consensus 9 ~~~~~~l~~~~~~-------~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 81 (164)
T 3ro3_A 9 GRAFGNLGNTHYL-------LGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 81 (164)
T ss_dssp HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 6688999999977 5599999999999998765433 58899999999999999999999999987654
Q ss_pred C------HHHHHHhHHHHhhcCCCHHHHHHHH-----------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhc
Q psy8160 234 N------ADTWCSIGNKDFSNNSNREDYHQAL-----------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTS 290 (324)
Q Consensus 234 ~------~~~~~~lg~~~~~~~~~~~~A~~~~-----------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~ 290 (324)
. ..++..+|.++...|+ +++|+..+ .++..+|.++...|++++ |+.++++++++
T Consensus 82 ~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~--A~~~~~~a~~~ 158 (164)
T 3ro3_A 82 LKDRAVEAQSCYSLGNTYTLLQD-YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ--AMHFAEKHLEI 158 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH--HHHHHHHHHHH
T ss_pred hCCcHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHH--HHHHHHHHHHH
Confidence 3 5678999999999999 99999988 567899999999999999 99999999987
Q ss_pred CCC
Q psy8160 291 IAS 293 (324)
Q Consensus 291 ~p~ 293 (324)
.+.
T Consensus 159 ~~~ 161 (164)
T 3ro3_A 159 SRE 161 (164)
T ss_dssp HTT
T ss_pred HHH
Confidence 654
No 188
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.39 E-value=8e-12 Score=90.56 Aligned_cols=118 Identities=16% Similarity=0.155 Sum_probs=101.9
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCccc---HHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFT---KLEVR 125 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~---~~~~~ 125 (324)
.+++++.+|.++...|++++|+.+|++++ .+|.+..++..+|.++...|++++|+..+++++...|..... ...++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 45689999999999999999999999999 999999999999999999999999999999999887654221 25789
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHh
Q psy8160 126 FHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHC 172 (324)
Q Consensus 126 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~ 172 (324)
+.+|.++...|++++|+..|++++... |+ ......++.+...
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~---~~~~~~l~~~~~~ 124 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH--RT---PDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CC---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CC---HHHHHHHHHHHHH
Confidence 999999999999999999999999988 63 3366666666533
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.35 E-value=7.9e-12 Score=108.01 Aligned_cols=139 Identities=17% Similarity=0.079 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH 130 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~ 130 (324)
..+..+|..++..|++++|+..|++++ ..+... +....++.....| ....++.++|.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------------~~~~~~~~~~~~~----~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------------AAAEDADGAKLQP----VALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------------HHSCHHHHGGGHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------------cccChHHHHHHHH----HHHHHHHHHHH
Confidence 346667777777777777777777655 221110 0000111111222 23478999999
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHH
Q psy8160 131 LHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRC 210 (324)
Q Consensus 131 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~ 210 (324)
++..+|++++|+.++++++..+ |++ +.+++.+|.++.. .+++++|+..|+++++++|.++.++..++.+
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~--p~~--~~a~~~lg~~~~~-------~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEID--PSN--TKALYRRAQGWQG-------LKEYDQALADLKKAQEIAPEDKAIQAELLKV 350 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhC--chh--HHHHHHHHHHHHH-------ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999999999999 887 5599999999977 5599999999999999999999999999999
Q ss_pred HHHcCCHHHHHHH
Q psy8160 211 FAAVGKVHDAFLA 223 (324)
Q Consensus 211 ~~~~~~~~~A~~~ 223 (324)
+...++++++...
T Consensus 351 ~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 351 KQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 9999988877653
No 190
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.34 E-value=1.7e-12 Score=91.67 Aligned_cols=84 Identities=12% Similarity=0.100 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC-----
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN----- 234 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~----- 234 (324)
+.++..+|.++.. .+++++|+..|+++++.+|.++.+++.+|.++...|++++|+..|++++.++|++
T Consensus 4 ~~~~~~~g~~~~~-------~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 76 (111)
T 2l6j_A 4 FEKQKEQGNSLFK-------QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI 76 (111)
T ss_dssp HHHHHHHHHHHHT-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHH
T ss_pred HHHHHHHHHHHHH-------cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHH
Confidence 5588999999977 5599999999999999999999999999999999999999999999999999998
Q ss_pred -HHHHHHhHHHHhhcCC
Q psy8160 235 -ADTWCSIGNKDFSNNS 250 (324)
Q Consensus 235 -~~~~~~lg~~~~~~~~ 250 (324)
+.+++.+|.++...|+
T Consensus 77 ~~~~~~~~~~~~~~~~~ 93 (111)
T 2l6j_A 77 RSKLQYRLELAQGAVGS 93 (111)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 6666666666666665
No 191
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.30 E-value=3.2e-11 Score=81.64 Aligned_cols=83 Identities=27% Similarity=0.384 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWC 239 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 239 (324)
+.+++.+|.++.. .+++++|+.+++++++.+|.++.+++.+|.++...|++++|+..|++++.++|+++.++.
T Consensus 9 ~~~~~~la~~~~~-------~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 81 (91)
T 1na3_A 9 AEAWYNLGNAYYK-------QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQ 81 (91)
T ss_dssp HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHH-------ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHH
Confidence 5689999999977 559999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHhhcC
Q psy8160 240 SIGNKDFSNN 249 (324)
Q Consensus 240 ~lg~~~~~~~ 249 (324)
.+|.++...|
T Consensus 82 ~l~~~~~~~g 91 (91)
T 1na3_A 82 NLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 9999987654
No 192
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.24 E-value=1e-10 Score=83.19 Aligned_cols=74 Identities=15% Similarity=0.196 Sum_probs=69.1
Q ss_pred HHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 185 LAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 185 ~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
+|+..|+++++.+|.++.+++.+|.++...|++++|+..|++++..+|+++.+|+.+|.++...|+ +++|+..|
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~ 76 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGD-RAGARQAW 76 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 488999999999999999999999999999999999999999999999999999999999999999 77766665
No 193
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.23 E-value=5.8e-11 Score=84.48 Aligned_cols=100 Identities=14% Similarity=0.151 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHH
Q psy8160 139 KTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVH 218 (324)
Q Consensus 139 ~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~ 218 (324)
++|+..|++++..+ |++ +.+++.+|.++.. .+++++|+..|+++++.+|.++.+|+.+|.++...|+++
T Consensus 2 ~~a~~~~~~al~~~--p~~--~~~~~~lg~~~~~-------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 70 (115)
T 2kat_A 2 QAITERLEAMLAQG--TDN--MLLRFTLGKTYAE-------HEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRA 70 (115)
T ss_dssp CCHHHHHHHHHTTT--CCC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred hHHHHHHHHHHHhC--CCc--HHHHHHHHHHHHH-------ccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHH
Confidence 35788999999999 887 5599999999977 559999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCC--CHHHHHHhHHHHhhcC
Q psy8160 219 DAFLAYRNSVEKSEG--NADTWCSIGNKDFSNN 249 (324)
Q Consensus 219 ~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~ 249 (324)
+|+..|++++.++|. +......+...+...+
T Consensus 71 ~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~ 103 (115)
T 2kat_A 71 GARQAWESGLAAAQSRGDQQVVKELQVFLRRLA 103 (115)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHhc
Confidence 999999999999884 3445555555544443
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.21 E-value=1.5e-11 Score=86.69 Aligned_cols=95 Identities=19% Similarity=0.144 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc-
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS- 200 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~- 200 (324)
.+.++.+|.++...|++++|+..|++++..+ |.+ +.++..+|.++.. .+++++|+..++++++.+|.+
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~--~~~~~~lg~~~~~-------~g~~~~A~~~~~~al~~~p~~~ 72 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQN--PVGYSNKAMALIK-------LGEYTQAIQMCQQGLRYTSTAE 72 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHTSCSSTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCC--HHHHHHHHHHHHH-------hcCHHHHHHHHHHHHHhCCCcc
Confidence 4788999999999999999999999999999 887 5599999999977 559999999999999999998
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8160 201 -----GQSLYLLGRCFAAVGKVHDAFLAYRNS 227 (324)
Q Consensus 201 -----~~~~~~lg~~~~~~~~~~~A~~~~~~a 227 (324)
..+++.+|.++...|+++.|+..+++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 73 HVAIRSKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp SHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 889999999999999888887766543
No 195
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.19 E-value=1.9e-09 Score=99.63 Aligned_cols=217 Identities=12% Similarity=-0.008 Sum_probs=169.1
Q ss_pred HHHHHhhhhccccccchhhhHhHHHHH--HHHH-HHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-c
Q psy8160 4 VIQKNLVEGIVTSVRVPKLQQFGKTLN--IKAI-KTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-I 79 (324)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~A~-~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~ 79 (324)
+.+..+..-+..|++|...+++....+ ++|. +.|.+++...|. ...+++..+.+....|+++.|.+.|++++ .
T Consensus 331 ~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~---s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 331 VYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN---SAVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 455666666777777777777554444 7887 999999999985 45578899999999999999999999999 4
Q ss_pred -----------CCC-----------CchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhh-
Q psy8160 80 -----------DAS-----------PCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQR- 136 (324)
Q Consensus 80 -----------~~~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~- 136 (324)
.|. ...++...+.+....|+.+.|...|.+++...|... ..++...|.+-...+
T Consensus 408 l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~---~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 408 IHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT---PDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC---THHHHHHHHHHHTTTS
T ss_pred HHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHhCC
Confidence 143 334677778888888999999999999998723222 156666676666654
Q ss_pred cHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC---ccHHHHHHHHHHHHH
Q psy8160 137 KYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP---KSGQSLYLLGRCFAA 213 (324)
Q Consensus 137 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~lg~~~~~ 213 (324)
+.+.|...|+.+++.. |++. ..+...+..... .++.+.|...|++++...| .....|......-..
T Consensus 485 d~e~Ar~ife~~Lk~~--p~~~--~~w~~y~~fe~~-------~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~ 553 (679)
T 4e6h_A 485 DTKTACKVLELGLKYF--ATDG--EYINKYLDFLIY-------VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESK 553 (679)
T ss_dssp CCHHHHHHHHHHHHHH--TTCH--HHHHHHHHHHHH-------HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC--CCch--HHHHHHHHHHHh-------CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 5899999999999998 7763 366555555433 3489999999999999888 456788888888888
Q ss_pred cCCHHHHHHHHHHHHccCCCCHHH
Q psy8160 214 VGKVHDAFLAYRNSVEKSEGNADT 237 (324)
Q Consensus 214 ~~~~~~A~~~~~~al~~~p~~~~~ 237 (324)
.|+.+.+.....++.+..|+++..
T Consensus 554 ~G~~~~~~~v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 554 VGSLNSVRTLEKRFFEKFPEVNKL 577 (679)
T ss_dssp TCCSHHHHHHHHHHHHHSTTCCHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCcHH
Confidence 999999999999999999987544
No 196
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.14 E-value=3.2e-10 Score=78.50 Aligned_cols=63 Identities=16% Similarity=0.204 Sum_probs=57.7
Q ss_pred hCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 196 ADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 196 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.+|+++.+|+.+|.++...|++++|+..|+++++++|+++.+|+.+|.+|...|+ +++|+..|
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~-~~~A~~~~ 64 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDR-TDDAIDTY 64 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-HHHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999 88887776
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.12 E-value=2.4e-09 Score=78.83 Aligned_cols=93 Identities=18% Similarity=0.284 Sum_probs=64.0
Q ss_pred hcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHH--
Q psy8160 136 RKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAA-- 213 (324)
Q Consensus 136 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~-- 213 (324)
+++++|+..|+++.+.. +.. +. +|.+|.. ....++|+.+|+++.+. .++.+++.||.+|..
T Consensus 9 ~d~~~A~~~~~~aa~~g--~~~----a~--lg~~y~~-------g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~ 71 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN--EMF----GC--LSLVSNS-------QINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGK 71 (138)
T ss_dssp HHHHHHHHHHHHHHHTT--CTT----HH--HHHHTCT-------TSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCS
T ss_pred cCHHHHHHHHHHHHcCC--CHh----hh--HHHHHHc-------CCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCC
Confidence 46777777777777665 322 33 7777744 12455678888877765 467777778887777
Q ss_pred --cCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhh
Q psy8160 214 --VGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFS 247 (324)
Q Consensus 214 --~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 247 (324)
.+++++|+.+|+++.+. .++.++++||.+|..
T Consensus 72 g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~ 105 (138)
T 1klx_A 72 YVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA 105 (138)
T ss_dssp SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence 77788888888887665 467777777777666
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.12 E-value=8.2e-10 Score=81.32 Aligned_cols=110 Identities=10% Similarity=-0.049 Sum_probs=95.8
Q ss_pred hhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhh----cCCCHHHHH
Q psy8160 181 HRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFS----NNSNREDYH 256 (324)
Q Consensus 181 ~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~~~~~~~A~ 256 (324)
+++++|+.+|+++.+..+. .+. +|.+|...+.+++|+.+|+++.+. .++.+++++|.+|.. .++ +++|+
T Consensus 9 ~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d-~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM--FGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKD-LRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT--THH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCC-HHHHH
T ss_pred cCHHHHHHHHHHHHcCCCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCcc-HHHHH
Confidence 4899999999999988744 344 999999999999999999999886 689999999999998 888 99999
Q ss_pred HHH---------HHHHhhHHHHHH----cCCCCcchHHHHHHHhhhcCCChhhhhhch
Q psy8160 257 QAL---------NKYRDLGDFLVI----NNIPTSNNNRQCYNSYSTSIASCKHINNNK 301 (324)
Q Consensus 257 ~~~---------~~~~~lg~~~~~----~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 301 (324)
.+| .++++||.+|.. .+++++ |+.+|++|.+.. ++....++
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~--A~~~~~~Aa~~g--~~~A~~~l 135 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQ--AVKTFEKACRLG--SEDACGIL 135 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHH--HHHHHHHHHHTT--CHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHH--HHHHHHHHHHCC--CHHHHHHH
Confidence 999 889999999999 889999 999999999874 34444433
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.11 E-value=7.9e-10 Score=74.62 Aligned_cols=83 Identities=18% Similarity=0.239 Sum_probs=69.4
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHI 128 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~l 128 (324)
...+++.+|.++...|++++|+.+|++++ .+|.+..++..+|.++...|++++|+..+++++...|... .++..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~----~~~~~l 83 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA----EAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCH----HHHHHH
Confidence 45688999999999999999999999999 8888888888888888888888888888888888777664 677788
Q ss_pred HHHHHHhh
Q psy8160 129 AHLHEVQR 136 (324)
Q Consensus 129 a~~~~~~~ 136 (324)
|.++...|
T Consensus 84 ~~~~~~~g 91 (91)
T 1na3_A 84 GNAKQKQG 91 (91)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 87776543
No 200
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=99.08 E-value=1.7e-08 Score=85.25 Aligned_cols=162 Identities=7% Similarity=-0.012 Sum_probs=111.9
Q ss_pred HHHHHHHHh---hcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccc----hhHHHHHHHHHHHhhhCCc
Q psy8160 127 HIAHLHEVQ---RKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKS----HRETLAIHCLQKSIEADPK 199 (324)
Q Consensus 127 ~la~~~~~~---~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~A~~~~~~al~~~~~ 199 (324)
..|.-+... .++.+|+.+|+++++++ |+. +.++..++++|......+... .....++.. ..++..+|.
T Consensus 201 Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~--a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a-~~a~~~~~~ 275 (372)
T 3ly7_A 201 YQAHDYLLHGDDKSLNRASELLGEIVQSS--PEF--TYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN-IVTLPELNN 275 (372)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTC--HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH-HHTCGGGTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCC--HHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH-HHhcccCCc
Confidence 334444443 45689999999999999 998 457777777775322222101 112222221 124467799
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcch
Q psy8160 200 SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNN 279 (324)
Q Consensus 200 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~ 279 (324)
++.++..+|..+...|++++|+..+++|+.++|+ ..+|..+|.++...|+ +++
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~------------------------~~e-- 328 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGM------------------------NRE-- 328 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTC------------------------HHH--
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCC------------------------HHH--
Confidence 9999999999999999999999999999999974 6666677777776666 667
Q ss_pred HHHHHHHhhhcCCChhhhhhchhhhccCChhhHHHHHHHHh
Q psy8160 280 NRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYR 320 (324)
Q Consensus 280 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~~~ 320 (324)
|++.|.+|+.++|..+....--...-...-+...-++..|.
T Consensus 329 A~e~~~~AlrL~P~~~t~~~~~~l~F~sn~~~i~~~~~~~~ 369 (372)
T 3ly7_A 329 AADAYLTAFNLRPGANTLYWIENGIFQTSVPYVVPYLDKFL 369 (372)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHHSSSCCCHHHHCHHHHHHH
T ss_pred HHHHHHHHHhcCCCcChHHHHhCceeecchhhhHHHHHhcc
Confidence 99999999999999875433322222344555666666654
No 201
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.02 E-value=5.1e-10 Score=77.09 Aligned_cols=57 Identities=18% Similarity=0.401 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHhhhCCccHH-HHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q psy8160 182 RETLAIHCLQKSIEADPKSGQ-SLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTW 238 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~~-~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 238 (324)
++++|+..++++++.+|.++. +++.+|.++...|++++|+..|++++.++|+++.++
T Consensus 15 ~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 15 DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp CHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred CHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 444444444444444444444 444444444444444444444444444444444444
No 202
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.02 E-value=2e-09 Score=74.09 Aligned_cols=89 Identities=11% Similarity=0.067 Sum_probs=72.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHH-HHHHhHHHHhhcCCCHHHHHHHHHHHH----hhHHHHHHcCCCCcc
Q psy8160 204 LYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNAD-TWCSIGNKDFSNNSNREDYHQALNKYR----DLGDFLVINNIPTSN 278 (324)
Q Consensus 204 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~lg~~~~~~~~~~~~A~~~~~~~~----~lg~~~~~~~~~~~~ 278 (324)
.+.+|.++...|++++|+..|+++++.+|+++. +|+.+|.++...|+ +++|+..|.... .-..++. .+.+.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~-~~~~~~- 79 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGD-WQKALNNYQSAIELNPDSPALQA-RKMVMD- 79 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTSTHHHH-HHHHHH-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCcHHHHH-HHHHHH-
Confidence 367899999999999999999999999999999 99999999999999 999999991111 1111111 145677
Q ss_pred hHHHHHHHhhhcCCChhh
Q psy8160 279 NNRQCYNSYSTSIASCKH 296 (324)
Q Consensus 279 ~A~~~~~~al~~~p~~~~ 296 (324)
++..|++++..+|+++.
T Consensus 80 -a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 80 -ILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp -HHHHHCCTTHHHHCCSS
T ss_pred -HHHHHHHHhccCccccc
Confidence 99999999999998764
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.01 E-value=6.2e-09 Score=92.75 Aligned_cols=134 Identities=10% Similarity=0.037 Sum_probs=106.1
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhcCC----CcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC---CCCchh-hHH
Q psy8160 91 GLMFKVNNEYDSALKHLTLCLIDASP----CTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDD---LPVHLK-ADI 162 (324)
Q Consensus 91 a~~~~~~~~~~~A~~~~~~~l~~~~~----~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~-~~~ 162 (324)
+..+..+|+|++|+..+++++..... .......++.++|.+|..+|++++|+.++++++++.. -|++.. +.+
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 34466789999999999999865322 2234567899999999999999999999999987520 044433 779
Q ss_pred HHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhh-----CCccH---HHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q psy8160 163 CRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA-----DPKSG---QSLYLLGRCFAAVGKVHDAFLAYRNSVEKS 231 (324)
Q Consensus 163 ~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~~~---~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 231 (324)
+.++|.+|.. .|++++|+..+++++++ -|++| +....++.++..++.+++|...|+++.+..
T Consensus 396 l~nLa~~~~~-------~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 396 VMRAGLTNWH-------AGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999977 55999999999999864 35554 667789999999999999999999987543
No 204
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=99.00 E-value=3e-08 Score=80.38 Aligned_cols=125 Identities=14% Similarity=0.124 Sum_probs=94.6
Q ss_pred HHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcc--cchhHHHHHHHHHHHhhhCCc--cHHHHHHHHHHHHHc-----C
Q psy8160 145 YEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGE--KSHRETLAIHCLQKSIEADPK--SGQSLYLLGRCFAAV-----G 215 (324)
Q Consensus 145 ~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~A~~~~~~al~~~~~--~~~~~~~lg~~~~~~-----~ 215 (324)
+..++.... |++.++-.|..+++.-.-....|. ......+|...++++++++|+ +..+|..+|.+|... |
T Consensus 140 ~~~~l~~~~-~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gG 218 (301)
T 3u64_A 140 LHKVLSRCT-RVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGG 218 (301)
T ss_dssp HHHHHTTCC-GGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTC
T ss_pred HHHHHHHcC-ccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCC
Confidence 444554432 666554455555554432111121 466889999999999999999 677999999999995 9
Q ss_pred CHHHHHHHHHHHHccCCCC-HHHHHHhHHHHhhc-CCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCC
Q psy8160 216 KVHDAFLAYRNSVEKSEGN-ADTWCSIGNKDFSN-NSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIAS 293 (324)
Q Consensus 216 ~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~-~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~ 293 (324)
+.++|..+|++|++++|+. .+.++..|..+... |+ +++ |..++++|+..+|.
T Consensus 219 d~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd------------------------~~~--a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 219 GMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN------------------------RAG--FDEALDRALAIDPE 272 (301)
T ss_dssp CHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC------------------------HHH--HHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC------------------------HHH--HHHHHHHHHcCCCC
Confidence 9999999999999999975 99999999888774 65 556 88889999998887
Q ss_pred h-hh
Q psy8160 294 C-KH 296 (324)
Q Consensus 294 ~-~~ 296 (324)
. |.
T Consensus 273 ~~P~ 276 (301)
T 3u64_A 273 SVPH 276 (301)
T ss_dssp GCSS
T ss_pred CCCC
Confidence 5 54
No 205
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.97 E-value=9.8e-09 Score=91.45 Aligned_cols=134 Identities=9% Similarity=-0.118 Sum_probs=103.0
Q ss_pred HHHHHHHhccHHHHHHHHHHHh-c--------CCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHh----cCCCcccHHH
Q psy8160 57 LGLMFKVNNEYDSALKHLTLCL-I--------DASPCTFTKLEGLMFKVNNEYDSALKHLTLCLID----ASPCTFTKLE 123 (324)
Q Consensus 57 lg~~~~~~~~~~~A~~~~~~al-~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~ 123 (324)
.+..+..+|+|++|+..+++++ + +|.-......+|.+|..+|+|++|+.++++++.. -++.....+.
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 3445678899999999999988 4 2333455666899999999999999999999754 3444445678
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHhcCC---CCCchh-hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC
Q psy8160 124 VRFHIAHLHEVQRKYKTAKDSYEQLLKEDD---LPVHLK-ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD 197 (324)
Q Consensus 124 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 197 (324)
.+.+||.+|..+|++++|+..|++++++.. -|++.. +++...++.++.. .+.+++|+..|+++.+..
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e-------~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEME-------LRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999987520 055533 5566677777755 448999999999986543
No 206
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.95 E-value=8.6e-07 Score=79.40 Aligned_cols=106 Identities=4% Similarity=-0.104 Sum_probs=86.8
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHH
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVG-KVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQA 258 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~ 258 (324)
.++.+.|...|.++ ...+.....|...+.+-...+ +.+.|...|+.+++..|+.++.|...+......|+ .+.|...
T Consensus 299 ~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~-~~~aR~l 376 (493)
T 2uy1_A 299 KRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGD-EENARAL 376 (493)
T ss_dssp HHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHH
T ss_pred cCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC-HHHHHHH
Confidence 34688899999999 433345677777777666555 69999999999999999999999999998889999 9999988
Q ss_pred H-------HHHHhhHHHHHHcCCCCcchHHHHHHHhhh
Q psy8160 259 L-------NKYRDLGDFLVINNIPTSNNNRQCYNSYST 289 (324)
Q Consensus 259 ~-------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~ 289 (324)
| .+|......-...|+.+. +...++++++
T Consensus 377 ~er~~k~~~lw~~~~~fE~~~G~~~~--~r~v~~~~~~ 412 (493)
T 2uy1_A 377 FKRLEKTSRMWDSMIEYEFMVGSMEL--FRELVDQKMD 412 (493)
T ss_dssp HHHSCCBHHHHHHHHHHHHHHSCHHH--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHH--HHHHHHHHHH
Confidence 7 567777777777798888 8888998885
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.95 E-value=4e-09 Score=72.89 Aligned_cols=65 Identities=12% Similarity=0.023 Sum_probs=48.0
Q ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhc
Q psy8160 50 ANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDA 114 (324)
Q Consensus 50 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~ 114 (324)
+..+++.+|.++...|++++|+.+|++++ .+|.+..++..+|.++...|++++|+..|++++...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 45677888888888888888888888877 777777777777777777777777777777666543
No 208
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.84 E-value=5.8e-07 Score=72.96 Aligned_cols=94 Identities=7% Similarity=-0.074 Sum_probs=81.8
Q ss_pred cHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc-HHHHHHHHHHHHH-c
Q psy8160 137 KYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS-GQSLYLLGRCFAA-V 214 (324)
Q Consensus 137 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~lg~~~~~-~ 214 (324)
....|...++++++++ |+.....++..+|.+|...-..+ -|+.++|..+|+++++++|+. ..+++..|..+.. .
T Consensus 178 ~l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~--gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 178 TVHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESF--GGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTT--TCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTT
T ss_pred hHHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCcc--CCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Confidence 4678999999999999 98666789999999997743332 459999999999999999975 9999999999888 5
Q ss_pred CCHHHHHHHHHHHHccCCCC
Q psy8160 215 GKVHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 215 ~~~~~A~~~~~~al~~~p~~ 234 (324)
|+++.|...+++++..+|..
T Consensus 254 gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGGG
T ss_pred CCHHHHHHHHHHHHcCCCCC
Confidence 99999999999999988873
No 209
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.84 E-value=4.6e-08 Score=71.70 Aligned_cols=99 Identities=8% Similarity=0.020 Sum_probs=80.5
Q ss_pred cHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC-C-ccHHHHHHHHHHHHHc
Q psy8160 137 KYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD-P-KSGQSLYLLGRCFAAV 214 (324)
Q Consensus 137 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~-~~~~~~~~lg~~~~~~ 214 (324)
....+.+.|.+.+..+ +.+ .++.+++||++..-.. ..+.++++..++.+++.+ | ...+++|++|..+...
T Consensus 13 ~l~~~~~~y~~e~~~~--~~~--~~~~F~ya~~Lv~S~~----~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl 84 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG--SVS--KSTQFEYAWCLVRSKY----NDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL 84 (152)
T ss_dssp HHHHHHHHHHHHHHTT--CCC--HHHHHHHHHHHHTCSS----HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccC--CCc--HHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHc
Confidence 4456667777777766 555 5599999999966221 237889999999999998 7 5689999999999999
Q ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHhHH
Q psy8160 215 GKVHDAFLAYRNSVEKSEGNADTWCSIGN 243 (324)
Q Consensus 215 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 243 (324)
|+|++|..+++++++++|++..+....-.
T Consensus 85 ~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 85 KEYEKALKYVRGLLQTEPQNNQAKELERL 113 (152)
T ss_dssp SCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 99999999999999999999887665433
No 210
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.78 E-value=2.1e-08 Score=67.99 Aligned_cols=74 Identities=11% Similarity=0.030 Sum_probs=61.7
Q ss_pred CCccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcC
Q psy8160 197 DPKSGQSLYLLGRCFAAVGK---VHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINN 273 (324)
Q Consensus 197 ~~~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~ 273 (324)
+|++++.+..+|.+++..++ .++|...+++++..+|+++.+++.+|..++..|+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~----------------------- 58 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFR----------------------- 58 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-----------------------
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCC-----------------------
Confidence 58889999999999876665 6899999999999999999998888888888887
Q ss_pred CCCcchHHHHHHHhhhcCCChhh
Q psy8160 274 IPTSNNNRQCYNSYSTSIASCKH 296 (324)
Q Consensus 274 ~~~~~~A~~~~~~al~~~p~~~~ 296 (324)
+++ |+.+|+++++.+|.++.
T Consensus 59 -y~~--Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 59 -FQE--AIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp -HHH--HHHHHHHHHTCCCTTCC
T ss_pred -HHH--HHHHHHHHHhhCCCCcc
Confidence 555 88888888888887543
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.78 E-value=7.8e-08 Score=65.16 Aligned_cols=81 Identities=11% Similarity=0.044 Sum_probs=66.7
Q ss_pred ccchHHHHHHHHHHHHhcc---HHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHH
Q psy8160 48 LRANEVHLRLGLMFKVNNE---YDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLE 123 (324)
Q Consensus 48 ~~~~~~~~~lg~~~~~~~~---~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~ 123 (324)
|.+++++..+|.+++..++ .++|..++++++ .||++..+...+|..+...|+|++|+.+|++++...|. ......
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~ 81 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVT 81 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHH
Confidence 3467789999999876666 799999999999 99999999999999999999999999999999998888 444444
Q ss_pred HHHHHH
Q psy8160 124 VRFHIA 129 (324)
Q Consensus 124 ~~~~la 129 (324)
+...+.
T Consensus 82 i~~~I~ 87 (93)
T 3bee_A 82 IIESIN 87 (93)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.75 E-value=5.6e-07 Score=76.02 Aligned_cols=72 Identities=15% Similarity=0.135 Sum_probs=61.6
Q ss_pred CCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q psy8160 155 PVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 155 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 234 (324)
|.. +.++..++..+.. .|++++|+..+++++.++| +..+|..+|.++...|++++|++.|++|+.++|..
T Consensus 274 ~~~--a~~~~alal~~l~-------~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 274 NNL--SIIYQIKAVSALV-------KGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TTC--HHHHHHHHHHHHH-------HTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred CcC--HHHHHHHHHHHHh-------CCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 555 4577777776654 4599999999999999997 57788999999999999999999999999999977
Q ss_pred HH
Q psy8160 235 AD 236 (324)
Q Consensus 235 ~~ 236 (324)
+.
T Consensus 344 ~t 345 (372)
T 3ly7_A 344 NT 345 (372)
T ss_dssp HH
T ss_pred Ch
Confidence 53
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.72 E-value=3.2e-08 Score=72.53 Aligned_cols=96 Identities=6% Similarity=0.040 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcC---CHHHHHHHHHHHHccC-C-CCHHHHHHhHHHHhhcCCCHHHHH
Q psy8160 182 RETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVG---KVHDAFLAYRNSVEKS-E-GNADTWCSIGNKDFSNNSNREDYH 256 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~---~~~~A~~~~~~al~~~-p-~~~~~~~~lg~~~~~~~~~~~~A~ 256 (324)
....+.+.|.+.+..+|.+.++.+++|+++...+ +.++++..++.+++.+ | ++.++++++|..+++.++
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~------ 86 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE------ 86 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSC------
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccC------
Confidence 5667888888888888999999999999999988 6679999999999988 6 446666666666666665
Q ss_pred HHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhh
Q psy8160 257 QALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDF 303 (324)
Q Consensus 257 ~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 303 (324)
|++ |+++++++++.+|+|.++..-...
T Consensus 87 ------------------Y~~--A~~y~~~lL~ieP~n~QA~~Lk~~ 113 (152)
T 1pc2_A 87 ------------------YEK--ALKYVRGLLQTEPQNNQAKELERL 113 (152)
T ss_dssp ------------------HHH--HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ------------------HHH--HHHHHHHHHhcCCCCHHHHHHHHH
Confidence 677 999999999999999888765543
No 214
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.71 E-value=4.8e-06 Score=74.53 Aligned_cols=200 Identities=10% Similarity=0.025 Sum_probs=146.9
Q ss_pred HHHHHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHH
Q psy8160 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCL 111 (324)
Q Consensus 33 A~~~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l 111 (324)
....|++++...|.. +.+|+..+......|+.+.|...|.+++ . |.+...+...+.... .++ . ++++.
T Consensus 198 v~~~ye~al~~~p~~---~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e-~~~---~---~~~l~ 266 (493)
T 2uy1_A 198 MHFIHNYILDSFYYA---EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMD-EEA---V---YGDLK 266 (493)
T ss_dssp HHHHHHHHHHHTTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTT-CTH---H---HHHHH
T ss_pred HHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcc-hhH---H---HHHHH
Confidence 567999999999864 6689999999999999999999999999 9 988776665444321 111 1 22221
Q ss_pred Hh---cCC------CcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchh
Q psy8160 112 ID---ASP------CTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHR 182 (324)
Q Consensus 112 ~~---~~~------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 182 (324)
.. ... .......+|...+......++.+.|...|.++ . . |.. ...++...+.+.+.. + ++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~--~~~-~~~v~i~~A~lE~~~---~---~d 335 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-N--EGV-GPHVFIYCAFIEYYA---T---GS 335 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-T--SCC-CHHHHHHHHHHHHHH---H---CC
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-C--CCC-ChHHHHHHHHHHHHH---C---CC
Confidence 11 000 00112356778888888889999999999999 3 3 321 234665555555431 1 15
Q ss_pred HHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 183 ETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 183 ~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
.+.|...|+.+++..|+++..|...+......|+.+.|...|+++ +.....|......-...|+ .+.+.+.+
T Consensus 336 ~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~-~~~~r~v~ 407 (493)
T 2uy1_A 336 RATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGS-MELFRELV 407 (493)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSC-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCC-HHHHHHHH
Confidence 889999999999999999998888888888999999999999998 3468888888888888899 88887766
No 215
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.70 E-value=1.9e-07 Score=64.84 Aligned_cols=76 Identities=13% Similarity=0.092 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC-------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD-------PKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSE 232 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 232 (324)
+.-++.+|..++. .+++..|+..|+.|++.. +..+.++..+|.++..+|+++.|+..+++++.++|
T Consensus 5 a~dc~~lG~~~~~-------~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 5 AEDCFELGKVAYT-------EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHH-------ccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 5578899999988 559999999999999853 34678999999999999999999999999999999
Q ss_pred CCHHHHHHhH
Q psy8160 233 GNADTWCSIG 242 (324)
Q Consensus 233 ~~~~~~~~lg 242 (324)
+++.+..+++
T Consensus 78 ~~~~~~~n~~ 87 (104)
T 2v5f_A 78 EHQRANGNLK 87 (104)
T ss_dssp TCHHHHHHHH
T ss_pred CCHHHHhhHH
Confidence 9999988877
No 216
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.59 E-value=1.2e-06 Score=60.60 Aligned_cols=83 Identities=20% Similarity=0.148 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH 130 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~ 130 (324)
++-++.+|..++..++|+.|+.+|+.|+ + .....+.......+++..+|.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al--------------------------~----~~~~~~~~~~~~~~i~~~L~~ 54 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQAL--------------------------R----QLDEGEISTIDKVSVLDYLSY 54 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------------------H----HHHTTCCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHH--------------------------H----hhhccCCCcccHHHHHHHHHH
Confidence 3457788888888888888888887655 0 011111112345688999999
Q ss_pred HHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHH
Q psy8160 131 LHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLG 167 (324)
Q Consensus 131 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~ 167 (324)
++..+|++++|+..+++++... |++.. +..+++
T Consensus 55 ~~~~~g~~~~A~~~~~~al~l~--P~~~~--~~~n~~ 87 (104)
T 2v5f_A 55 AVYQQGDLDKALLLTKKLLELD--PEHQR--ANGNLK 87 (104)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTCHH--HHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHhcC--CCCHH--HHhhHH
Confidence 9999999999999999999999 88843 666666
No 217
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.54 E-value=8e-07 Score=77.90 Aligned_cols=99 Identities=10% Similarity=-0.035 Sum_probs=79.7
Q ss_pred HhhcHHHHHHHHHHHHhcCC---CCCchh-hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhh--------CCccH
Q psy8160 134 VQRKYKTAKDSYEQLLKEDD---LPVHLK-ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA--------DPKSG 201 (324)
Q Consensus 134 ~~~~~~~A~~~~~~al~~~~---~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~ 201 (324)
..|++++|+..+++++++.. -|++.. +.++.++|.+|.. .|++++|+.+++++++. .|+-.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~-------~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 382 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY-------MQDWEGALKYGQKIIKPYSKHYPVYSLNVA 382 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh-------hcCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 45789999999999997531 144433 6789999999976 55999999999999865 33444
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcc-----CCCCHHHHH
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEK-----SEGNADTWC 239 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~ 239 (324)
..+.+||.+|..+|++++|+..|++|+.+ .|++|.+-.
T Consensus 383 ~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 425 (433)
T 3qww_A 383 SMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE 425 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence 77999999999999999999999999874 688876643
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.46 E-value=1.7e-06 Score=75.97 Aligned_cols=112 Identities=10% Similarity=-0.103 Sum_probs=83.5
Q ss_pred HHHHHhccHHHHHHHHHHHh-c-----CCCC---chhhHHHHHHHHhcccHHHHHHHHHHHHHh----cCCCcccHHHHH
Q psy8160 59 LMFKVNNEYDSALKHLTLCL-I-----DASP---CTFTKLEGLMFKVNNEYDSALKHLTLCLID----ASPCTFTKLEVR 125 (324)
Q Consensus 59 ~~~~~~~~~~~A~~~~~~al-~-----~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~~~ 125 (324)
.-+..+|+|++|+..+++++ + .|.+ ......+|.+|..+|+|++|+.++++++.. .++.....+..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 34557889999999999988 4 2333 344566899999999999999999999754 455555667889
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhcCC---CCCchh-hHHHHHHHHHH
Q psy8160 126 FHIAHLHEVQRKYKTAKDSYEQLLKEDD---LPVHLK-ADICRQLGWMY 170 (324)
Q Consensus 126 ~~la~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~-~~~~~~l~~~~ 170 (324)
+++|.+|..+|++++|+.+|++++++-. -|++.. .++...++.+.
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~ 423 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD 423 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999987520 045433 34555555544
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.46 E-value=1.4e-06 Score=76.33 Aligned_cols=92 Identities=7% Similarity=-0.003 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhcc-----CCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHH
Q psy8160 31 IKAIKTFQQLLYV-----DPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALK 105 (324)
Q Consensus 31 ~~A~~~~~~~l~~-----~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~ 105 (324)
++|+..|+++|++ .|+++....++..||.+|..+|+|++|+.++++++ +
T Consensus 315 ~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL--------------------------~ 368 (433)
T 3qww_A 315 SELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKII--------------------------K 368 (433)
T ss_dssp HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------------------H
T ss_pred HHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH--------------------------H
Confidence 5677777777763 45555556677777777777777777777777433 3
Q ss_pred HHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc
Q psy8160 106 HLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151 (324)
Q Consensus 106 ~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 151 (324)
.+++++ ++.....+..+.+||.+|..+|++++|+..|++++++
T Consensus 369 i~~~~l---G~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 369 PYSKHY---PVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHS---CSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHc---CCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 333333 3334455678999999999999999999999999876
No 220
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.43 E-value=2.7e-06 Score=74.58 Aligned_cols=114 Identities=11% Similarity=0.016 Sum_probs=86.0
Q ss_pred HHHhcccHHHHHHHHHHHHHhc----CCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCC---CCCchh-hHHHH
Q psy8160 93 MFKVNNEYDSALKHLTLCLIDA----SPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDD---LPVHLK-ADICR 164 (324)
Q Consensus 93 ~~~~~~~~~~A~~~~~~~l~~~----~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~-~~~~~ 164 (324)
-+..+|++++|+..+++++... ++.......++.++|.+|..+|++++|+.++++++.... -|++.. +..+.
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3456799999999999998652 223335567899999999999999999999999986521 044433 77899
Q ss_pred HHHHHHHhhhhhcccchhHHHHHHHHHHHhhh-----CCccH---HHHHHHHHHHHH
Q psy8160 165 QLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA-----DPKSG---QSLYLLGRCFAA 213 (324)
Q Consensus 165 ~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~~~---~~~~~lg~~~~~ 213 (324)
++|.+|.. .|++++|+.++++++++ -|++| +++.+|+.+...
T Consensus 376 nLa~~~~~-------~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 376 KVGKLQLH-------QGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-------cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 99999977 55899999999999864 45555 445566666543
No 221
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.31 E-value=2.1e-05 Score=55.50 Aligned_cols=101 Identities=8% Similarity=0.017 Sum_probs=78.8
Q ss_pred hhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC-C-ccHHHHHHHHHHHH
Q psy8160 135 QRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD-P-KSGQSLYLLGRCFA 212 (324)
Q Consensus 135 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~-~~~~~~~~lg~~~~ 212 (324)
......+...|.+.+..+ +.. .++.+++||++..-.. ..+..+++..++..+..+ | ..-+.+|.||..+.
T Consensus 14 ~~~l~~~~~~y~~e~~~~--~~s--~~~~F~yAw~Lv~S~~----~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y 85 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAG--SVS--KSTQFEYAWCLVRTRY----NDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 85 (126)
T ss_dssp HHHHHHHHHHHHHHHHHS--CCC--HHHHHHHHHHHTTSSS----HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccC--CCc--HHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence 344556666777777766 444 5599999999955211 336778999999999887 5 56689999999999
Q ss_pred HcCCHHHHHHHHHHHHccCCCCHHHHHHhHH
Q psy8160 213 AVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243 (324)
Q Consensus 213 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 243 (324)
+.|+|++|..+++.+++++|++..+......
T Consensus 86 klg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 86 RLKEYEKALKYVRGLLQTEPQNNQAKELERL 116 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999999999999887655443
No 222
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.10 E-value=0.00077 Score=60.34 Aligned_cols=162 Identities=10% Similarity=-0.034 Sum_probs=117.6
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHh-c--CCCCchhhHHHHHHHHh---------cccHHHHHHHHHHHHHhcCCCcccH
Q psy8160 54 HLRLGLMFKVNNEYDSALKHLTLCL-I--DASPCTFTKLEGLMFKV---------NNEYDSALKHLTLCLIDASPCTFTK 121 (324)
Q Consensus 54 ~~~lg~~~~~~~~~~~A~~~~~~al-~--~~~~~~~~~~la~~~~~---------~~~~~~A~~~~~~~l~~~~~~~~~~ 121 (324)
+..+-..+.+.|++++|++.|++.. . .|+... +..+-..+.. .+..+.|.+.|++.....-...
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~t-yn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd--- 104 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYH-YNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN--- 104 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC---
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhH-HHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC---
Confidence 4444567788999999999999988 3 344433 3333334432 3457889999998876532211
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC-Ccc
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD-PKS 200 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~ 200 (324)
...+..+-..+...|+.++|...|++.....-.|+ ..++..+-..+.. .|+.++|...+++..+.. ..+
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd---~~tyn~lI~~~~~-------~g~~~~A~~l~~~M~~~G~~Pd 174 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR---LRSYGPALFGFCR-------KGDADKAYEVDAHMVESEVVPE 174 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC---HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc---cceehHHHHHHHH-------CCCHHHHHHHHHHHHhcCCCCC
Confidence 25677888889999999999999999877654354 3366666666654 458999999999987643 235
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy8160 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVE 229 (324)
Q Consensus 201 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 229 (324)
...|..+-..+...|+.++|...+++..+
T Consensus 175 ~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 175 EPELAALLKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 67788888899999999999999998765
No 223
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.07 E-value=0.00035 Score=62.59 Aligned_cols=165 Identities=6% Similarity=-0.081 Sum_probs=124.9
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhh--cccchhHHHHHHHHHHHhhhC-CccH
Q psy8160 125 RFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTL--GEKSHRETLAIHCLQKSIEAD-PKSG 201 (324)
Q Consensus 125 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~A~~~~~~al~~~-~~~~ 201 (324)
+..+-..+...|+.++|++.|++.....-.|+ ..++..+-.++...... ....+..++|...|++..... +.+.
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd---~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLS---QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCC---HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 44444667788999999999999887764454 23555555444321110 112457899999999987543 2366
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccC-CCCHHHHHHhHHHHhhcCCCHHHHHHHH------------HHHHhhHHH
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKS-EGNADTWCSIGNKDFSNNSNREDYHQAL------------NKYRDLGDF 268 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~A~~~~------------~~~~~lg~~ 268 (324)
.+|..+-..+...|++++|...|++..... +-+..+|..+-..|.+.|+ .++|.+.| .+|..+-..
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~-~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGD-ADKAYEVDAHMVESEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCC-HHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 788888899999999999999999987643 2267888889999999999 99999999 778889999
Q ss_pred HHHcCCCCcchHHHHHHHhhh--cCCChh
Q psy8160 269 LVINNIPTSNNNRQCYNSYST--SIASCK 295 (324)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~al~--~~p~~~ 295 (324)
|.+.|+.++ |.+.+++.-+ ..|+..
T Consensus 185 ~~~~g~~d~--A~~ll~~Mr~~g~~ps~~ 211 (501)
T 4g26_A 185 SMDTKNADK--VYKTLQRLRDLVRQVSKS 211 (501)
T ss_dssp HHHTTCHHH--HHHHHHHHHHHTSSBCHH
T ss_pred HhhCCCHHH--HHHHHHHHHHhCCCcCHH
Confidence 999999999 9999988754 456543
No 224
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=98.01 E-value=2.7e-05 Score=57.45 Aligned_cols=46 Identities=20% Similarity=0.302 Sum_probs=35.0
Q ss_pred cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHH
Q psy8160 120 TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMY 170 (324)
Q Consensus 120 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~ 170 (324)
...++.|.++.||...+++++|+..++.+-...+ . +.+...+|.+|
T Consensus 120 ~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R---t--~kvnm~LakLy 165 (167)
T 3ffl_A 120 SEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQR---T--PKINMLLANLY 165 (167)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC---C--HHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc---C--HHHHHHHHHHh
Confidence 3458999999999999999999999877533321 1 44777778776
No 225
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.99 E-value=0.00016 Score=51.12 Aligned_cols=81 Identities=14% Similarity=0.059 Sum_probs=67.6
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK-SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTW 238 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 238 (324)
..+.++.||+...-.. ..+..+++..++..+...|. .-+.+|.||..+.+.|+|++|..+.+.++++.|++..+.
T Consensus 40 ~qt~F~yAw~Lv~S~~----~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTD----VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp HHHHHHHHHHHHHSSC----HHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred hhhHHHHHHHHHcCCC----HHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 5689999999865221 33788999999999998884 568999999999999999999999999999999998876
Q ss_pred HHhHHH
Q psy8160 239 CSIGNK 244 (324)
Q Consensus 239 ~~lg~~ 244 (324)
.....+
T Consensus 116 ~Lk~~I 121 (134)
T 3o48_A 116 ALKSMV 121 (134)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544433
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.92 E-value=0.0002 Score=50.49 Aligned_cols=99 Identities=14% Similarity=0.024 Sum_probs=69.7
Q ss_pred cHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHH---HHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhh
Q psy8160 99 EYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKT---AKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDT 175 (324)
Q Consensus 99 ~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~---A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~ 175 (324)
....+...|.+.+...+.+. ++.|++|+++...++... ++..++.++... .+...-+.++.+|..+++
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~----~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg~yk--- 86 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSK----STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYR--- 86 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCH----HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhccCCCcH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHH---
Confidence 34455555666665545443 788888888887765544 888888877754 221235688888888877
Q ss_pred hcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHH
Q psy8160 176 LGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRC 210 (324)
Q Consensus 176 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~ 210 (324)
.++|++|..+++..++..|.+..+......+
T Consensus 87 ----lg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 87 ----LKEYEKALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp ----TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ----hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 5589999999999999999888776655444
No 227
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.78 E-value=0.00034 Score=50.17 Aligned_cols=78 Identities=14% Similarity=0.076 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHH
Q psy8160 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPK-SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTW 238 (324)
Q Consensus 160 ~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 238 (324)
.++.++.+|+...-.. ..+..+++..++..+...|. .-+.+|.||..+.++|+|++|..+.+..++++|++..+.
T Consensus 39 ~~t~F~YAw~Lv~S~~----~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTD----VNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp HHHHHHHHHHHHHSSS----HHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred HHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 5699999999965222 33788999999999998884 568999999999999999999999999999999998775
Q ss_pred HHh
Q psy8160 239 CSI 241 (324)
Q Consensus 239 ~~l 241 (324)
...
T Consensus 115 ~Lk 117 (144)
T 1y8m_A 115 ALK 117 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 228
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.77 E-value=0.00016 Score=53.42 Aligned_cols=89 Identities=8% Similarity=-0.025 Sum_probs=62.8
Q ss_pred chhHHHHHHHHHHHhhhCCccH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHccC---CCC-------------
Q psy8160 180 SHRETLAIHCLQKSIEADPKSG---------QSLYLLGRCFAAVGKVHDAFLAYRNSVEKS---EGN------------- 234 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~---------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~------------- 234 (324)
.+.|+.|+.....++....+++ ++++.+|..++..++|..|...|++|+... +.+
T Consensus 33 ~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~ 112 (167)
T 3ffl_A 33 AGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSAST 112 (167)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------------
T ss_pred hhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCC
Confidence 3478888888888765543333 478899999999999999999999987532 111
Q ss_pred ---------HHHHHHhHHHHhhcCCCHHHHHHHH----------HHHHhhHHHH
Q psy8160 235 ---------ADTWCSIGNKDFSNNSNREDYHQAL----------NKYRDLGDFL 269 (324)
Q Consensus 235 ---------~~~~~~lg~~~~~~~~~~~~A~~~~----------~~~~~lg~~~ 269 (324)
.+..+.++.||...++ +.+|+..+ .+...||.+|
T Consensus 113 p~s~~~~~e~Elkykia~C~~~l~~-~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 113 PQSQCLPSEIEVKYKLAECYTVLKQ-DKDAIAILDGIPSRQRTPKINMLLANLY 165 (167)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTTC-HHHHHHHHHTSCGGGCCHHHHHHHHHHC
T ss_pred cccccccchHHHHHHHHHHHHHHCC-HHHHHHHHhcCCchhcCHHHHHHHHHHh
Confidence 2566677777777777 77777766 5555555554
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.67 E-value=0.0013 Score=47.53 Aligned_cols=124 Identities=10% Similarity=0.012 Sum_probs=83.7
Q ss_pred cCCCCchhhHHHHHHHHhcccH------HHHHHHHHHHHHhcCCCcc----cHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy8160 79 IDASPCTFTKLEGLMFKVNNEY------DSALKHLTLCLIDASPCTF----TKLEVRFHIAHLHEVQRKYKTAKDSYEQL 148 (324)
Q Consensus 79 ~~~~~~~~~~~la~~~~~~~~~------~~A~~~~~~~l~~~~~~~~----~~~~~~~~la~~~~~~~~~~~A~~~~~~a 148 (324)
..|.+.+.+..........|+. +.-++.|++++...|+... ....+|...|.. ...++.++|.+.|+.+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a 86 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMA 86 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHH
Confidence 5666666666666666666776 7777788888877776542 223456666755 5668999999999999
Q ss_pred HhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcC
Q psy8160 149 LKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVG 215 (324)
Q Consensus 149 l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 215 (324)
+... ... +.+|...|....+ .++...|...+.+++.+.|...+. ...+..-...|
T Consensus 87 ~~~h--KkF--AKiwi~~AqFEiR-------qgnl~kARkILg~AiG~~~k~~~~-le~a~~nl~~~ 141 (161)
T 4h7y_A 87 RANC--KKF--AFVHISFAQFELS-------QGNVKKSKQLLQKAVERGAVPLEM-LEIALRNLNLQ 141 (161)
T ss_dssp HHHC--TTB--HHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHTTCBCHHH-HHHHHHHHHTT
T ss_pred HHHh--HHH--HHHHHHHHHHHHH-------cccHHHHHHHHHHHhccCCCcHHH-HHHHHHhhhcC
Confidence 8874 443 5566666665544 558999999999999999876544 33344444444
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.61 E-value=0.0012 Score=47.79 Aligned_cols=112 Identities=12% Similarity=0.006 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHhhcH------HHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhh
Q psy8160 122 LEVRFHIAHLHEVQRKY------KTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIE 195 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~------~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 195 (324)
.+.|..........|+. ++-++.|++++..- |... ...|..-..+...+... ...++.++|...|+.++.
T Consensus 13 yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~--Pp~k-~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 13 PEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL--PPDK-YGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARA 88 (161)
T ss_dssp HHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS--CGGG-GTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC--Cccc-cccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHH
Confidence 38888888888888998 88889999999876 5432 11222222222111111 013588899999999998
Q ss_pred hCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH
Q psy8160 196 ADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADT 237 (324)
Q Consensus 196 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 237 (324)
.....+.+|...|.--..+|+...|.+.+.+|+.+.|...+.
T Consensus 89 ~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 89 NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 888889999999999999999999999999999999986554
No 231
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.21 E-value=0.0061 Score=56.73 Aligned_cols=118 Identities=18% Similarity=0.254 Sum_probs=81.9
Q ss_pred HHHhhc-HHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhh--------CCcc--
Q psy8160 132 HEVQRK-YKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA--------DPKS-- 200 (324)
Q Consensus 132 ~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~-- 200 (324)
....++ ++.|+..+++....+ |.. .+++..+.+... ... ..+--+|+..+.++++. .+.+
T Consensus 258 ~~~t~~~~~~a~~~le~L~~~~--p~~---~~~~~~~~i~~~-~~~---~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 258 IAITPSLVDFTIDYLKGLTKKD--PIH---DIYYKTAMITIL-DHI---ETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHTCGGGHHHHHHHHHHHHHHC--GGG---HHHHHHHHHHHH-TTC---GGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HcccccHHHHHHHHHHHHHhhC--Cch---hHHHHHHHHHHH-HHh---hhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 334555 578999999988887 643 233333333211 001 11344566666666531 2222
Q ss_pred --------HHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 201 --------GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 201 --------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
...+..-+.-+...|+++-|++..++|+...|..-..|+.|+.+|..+|+ |+.|+-.+
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d-~e~ALLtL 394 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEE-YEKALFAI 394 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhcc-HHHHHHHH
Confidence 23444556777789999999999999999999999999999999999999 99998877
No 232
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=97.15 E-value=0.014 Score=41.25 Aligned_cols=79 Identities=13% Similarity=0.023 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHhh---cHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC
Q psy8160 122 LEVRFHIAHLHEVQR---KYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP 198 (324)
Q Consensus 122 ~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 198 (324)
..+.|++|+++.... +..+++..++.++... |.. .-+.++.+|..+++ .|+|++|..+.+.+++..|
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~-~Rd~LYyLAvg~yk-------lgdY~~Ar~y~d~lL~~eP 109 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESR-RRECLYYLTIGCYK-------LGEYSMAKRYVDTLFEHER 109 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGG-HHHHHHHHHHHHHH-------HTCHHHHHHHHHHHHTTCT
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cch-hHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHhhCC
Confidence 478899998888764 4567999999988876 633 35688999988887 5599999999999999999
Q ss_pred ccHHHHHHHHHH
Q psy8160 199 KSGQSLYLLGRC 210 (324)
Q Consensus 199 ~~~~~~~~lg~~ 210 (324)
.+..+......+
T Consensus 110 ~N~QA~~Lk~~I 121 (134)
T 3o48_A 110 NNKQVGALKSMV 121 (134)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999887665554
No 233
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=97.11 E-value=0.078 Score=45.48 Aligned_cols=171 Identities=16% Similarity=0.054 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHH-----HHHHHH-hcccHHHHHHHHHHHHHhc--CCCcccHH
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKL-----EGLMFK-VNNEYDSALKHLTLCLIDA--SPCTFTKL 122 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~-----la~~~~-~~~~~~~A~~~~~~~l~~~--~~~~~~~~ 122 (324)
.+.+.||..|...|++++-.+.+.... .-+.-..+... +-..+. ..+..+.-++.+..++.-. ....+-+.
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999888887765 22222222111 222222 2355555566666665432 22222233
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCC--CchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC---
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLP--VHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD--- 197 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--- 197 (324)
.+-..+|..|...|+|.+|...+.++...-... .....+++.....+|.. .+++.++...+.++....
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~-------~~n~~k~k~~l~~a~~~~~ai 172 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA-------LSNLPKARAALTSARTTANAI 172 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH-------hccHHHHHHHHHHHHhhhccC
Confidence 455588999999999999999999887643211 11224566666666655 448888888888886432
Q ss_pred CccH----HHHHHHHHHHH-HcCCHHHHHHHHHHHHc
Q psy8160 198 PKSG----QSLYLLGRCFA-AVGKVHDAFLAYRNSVE 229 (324)
Q Consensus 198 ~~~~----~~~~~lg~~~~-~~~~~~~A~~~~~~al~ 229 (324)
+.+| .....-|..+. ..++|.+|...|-.++.
T Consensus 173 ~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 173 YCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 1223 45566799999 89999999999999874
No 234
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.98 E-value=0.032 Score=40.00 Aligned_cols=79 Identities=13% Similarity=0.023 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHhh---cHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCC
Q psy8160 122 LEVRFHIAHLHEVQR---KYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP 198 (324)
Q Consensus 122 ~~~~~~la~~~~~~~---~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 198 (324)
.++.|++|+++.... +..+++..++.++... |.. .-+.++.+|..+++ .++|++|..+.+..++..|
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~--~~~-~RdcLYyLAvg~yk-------l~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESR-RRECLYYLTIGCYK-------LGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC--CST-HHHHHHHHHHHHHT-------TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--ccc-hhHHHHHHHHHHHH-------hhhHHHHHHHHHHHHhcCC
Confidence 478999999888765 4567899999988876 643 35688889988877 5599999999999999999
Q ss_pred ccHHHHHHHHHH
Q psy8160 199 KSGQSLYLLGRC 210 (324)
Q Consensus 199 ~~~~~~~~lg~~ 210 (324)
.+..+......+
T Consensus 109 ~n~QA~~Lk~~I 120 (144)
T 1y8m_A 109 NNKQVGALKSMV 120 (144)
T ss_dssp CCHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 998876655444
No 235
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.67 E-value=0.023 Score=53.77 Aligned_cols=96 Identities=15% Similarity=0.060 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHc--------cCCCCHHHHHHhHHHHhhcCCCHH
Q psy8160 182 RETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVE--------KSEGNADTWCSIGNKDFSNNSNRE 253 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--------~~p~~~~~~~~lg~~~~~~~~~~~ 253 (324)
++++|.+..+. .+++..|..+|..+...++++.|+.+|.++-. ....+.+.+..++......|+ +.
T Consensus 667 ~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~-~~ 740 (814)
T 3mkq_A 667 QLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGK-FN 740 (814)
T ss_dssp CHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-HH
T ss_pred CHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCc-hH
Confidence 66666655332 24556777777777777777777777766521 123445555566666666666 66
Q ss_pred HHHHHH---HHHHhhHHHHHHcCCCCcchHHHHHH
Q psy8160 254 DYHQAL---NKYRDLGDFLVINNIPTSNNNRQCYN 285 (324)
Q Consensus 254 ~A~~~~---~~~~~lg~~~~~~~~~~~~~A~~~~~ 285 (324)
.|..+| .-+...-.+|.+.+++++ |+..-+
T Consensus 741 ~A~~~~~~~g~~~~a~~~~~~~~~~~~--A~~lA~ 773 (814)
T 3mkq_A 741 LAFNAYWIAGDIQGAKDLLIKSQRFSE--AAFLGS 773 (814)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTTCHHH--HHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHcCChHH--HHHHHH
Confidence 665543 111222233555556666 555433
No 236
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=96.62 E-value=0.087 Score=45.17 Aligned_cols=26 Identities=15% Similarity=0.043 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQL 148 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~a 148 (324)
.+...+|.+|...|++++-.+.+...
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~ 45 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVT 45 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34556666666666666655555444
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.14 Score=47.71 Aligned_cols=132 Identities=15% Similarity=0.137 Sum_probs=81.2
Q ss_pred HHHHHhccc-HHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH---HhhcHHHHHHHHHHHHhc-----CCC-CCchhh
Q psy8160 91 GLMFKVNNE-YDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHE---VQRKYKTAKDSYEQLLKE-----DDL-PVHLKA 160 (324)
Q Consensus 91 a~~~~~~~~-~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~---~~~~~~~A~~~~~~al~~-----~~~-~~~~~~ 160 (324)
-.++...++ ++.|+..+++.....|... +++..+.+.. ...+--+|+....++++. ... +.+...
T Consensus 255 l~~~~~t~~~~~~a~~~le~L~~~~p~~~-----~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 255 KSFIAITPSLVDFTIDYLKGLTKKDPIHD-----IYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHTCGGGHHHHHHHHHHHHHHCGGGH-----HHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHcccccHHHHHHHHHHHHHhhCCchh-----HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 334444555 6889999999887766543 3333333222 123345577777666532 111 222110
Q ss_pred -HHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8160 161 -DICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNS 227 (324)
Q Consensus 161 -~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 227 (324)
......+.+...+..+=...++++-|+.+.++++...|.+-..|+.|+.+|..+|+|+.|+-.++-+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 0111111111111100001569999999999999999999999999999999999999999988776
No 238
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.026 Score=42.35 Aligned_cols=51 Identities=10% Similarity=0.124 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 200 SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 200 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
+++..+.++ ...|+++.|.+..+.. ++...|..+|......|+ ++-|..+|
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn-~~lAe~cy 57 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGN-ASLAEMIY 57 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCC-hHHHHHHH
Confidence 344444444 4456666666655443 345566666666666666 66666666
No 239
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.29 E-value=0.032 Score=49.52 Aligned_cols=79 Identities=13% Similarity=0.072 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHh
Q psy8160 162 ICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSI 241 (324)
Q Consensus 162 ~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 241 (324)
.+..+|.+.+. ...+..|..+|.+|..+.|.++..+..||.+....|+.-+|+-+|-+++......+.++.++
T Consensus 154 ~l~~LGDL~RY-------~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL 226 (497)
T 1ya0_A 154 CLVHLGDIARY-------RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNL 226 (497)
T ss_dssp HHHHHHHHHHH-------TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHH
T ss_pred HHHHcccHHHH-------HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHH
Confidence 55666777655 23678999999999999999999999999999999999999999999999888899999999
Q ss_pred HHHHhh
Q psy8160 242 GNKDFS 247 (324)
Q Consensus 242 g~~~~~ 247 (324)
..++..
T Consensus 227 ~~~f~~ 232 (497)
T 1ya0_A 227 QKALSK 232 (497)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
No 240
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=96.18 E-value=0.25 Score=36.54 Aligned_cols=172 Identities=17% Similarity=0.181 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCc-------------
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCT------------- 118 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~------------- 118 (324)
+...-++.+.+..|.|..|+-++. .-+.+....-.+.+|....+|..|+.++++.+...-+..
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd 109 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLH----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVD 109 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHH----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCC
T ss_pred HHHhhhhhhhhhcchHhHHHHHHH----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeec
Confidence 456778888899999998887776 455566677788899999999999999999984322211
Q ss_pred -ccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHh-----h--------hhhcccchhHH
Q psy8160 119 -FTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHC-----I--------DTLGEKSHRET 184 (324)
Q Consensus 119 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~-----~--------~~~~~~~~~~~ 184 (324)
..+.-.+..+|.+..+.|+-++|+.+|....... |-... .-+ .++.. . ...|.....+.
T Consensus 110 ~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~--~lf~~---vEn--liyeN~vp~~~d~~~i~~~~~~~i~~~y~~ 182 (242)
T 3kae_A 110 PGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKS--FLFSP---VEN--LLLENKVPQKRDKENVRQTGRRGIEEEYVS 182 (242)
T ss_dssp TTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHH---HHH--HHHTTCCCCCC-----------CHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCc--cccch---HHH--HHhhcCCCcccchHHHHhhhhccchhhhhh
Confidence 1222345567999999999999999999887765 32110 000 01100 0 00000001111
Q ss_pred HHHH--------HHHHHhhhCCccHHHH-HHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q psy8160 185 LAIH--------CLQKSIEADPKSGQSL-YLLGRCFAAVGKVHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 185 ~A~~--------~~~~al~~~~~~~~~~-~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 234 (324)
.... ..++-.+.-|.-...+ -.-+..++..|-.+++..+|....+.+|..
T Consensus 183 d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~F 241 (242)
T 3kae_A 183 DSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPMF 241 (242)
T ss_dssp HHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTT
T ss_pred hHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCCc
Confidence 1111 1222222334433332 244677889999999999999999998863
No 241
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.59 E-value=0.49 Score=41.24 Aligned_cols=110 Identities=16% Similarity=0.018 Sum_probs=75.8
Q ss_pred CCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchh
Q psy8160 80 DASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK 159 (324)
Q Consensus 80 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 159 (324)
+..-..+...+|..|...|+++.|.+.|.++....... ..+.+++..+..++...+++..+...+.++-.......+..
T Consensus 127 e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~-~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~ 205 (429)
T 4b4t_R 127 ELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIST-GAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWE 205 (429)
T ss_dssp CCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC-CSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHH
Confidence 34445567779999999999999999999987665443 35668888888888899999999999998865432122211
Q ss_pred --hHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhC
Q psy8160 160 --ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD 197 (324)
Q Consensus 160 --~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 197 (324)
.......|.++.. .++|..|-..|..++...
T Consensus 206 ~~~~lk~~~gl~~l~-------~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 206 RRNRYKTYYGIHCLA-------VRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHHHHHHHGGGG-------TSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHH-------hChHHHHHHHHHHHhccC
Confidence 2222233333322 448889988888877654
No 242
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=95.29 E-value=0.12 Score=45.87 Aligned_cols=77 Identities=8% Similarity=-0.007 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHL 131 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~ 131 (324)
.+..||.+......++.|..+|.+|+ +.|+++..+..+|.+....|+.-+|+-+|.+++....+.. .+..++...
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~----~a~~nL~~~ 229 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFP----AASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCH----HHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCCh----hHHHHHHHH
Confidence 45678888888889999999999999 9999999999999999999999999999999987655554 455566555
Q ss_pred HH
Q psy8160 132 HE 133 (324)
Q Consensus 132 ~~ 133 (324)
+.
T Consensus 230 f~ 231 (497)
T 1ya0_A 230 LS 231 (497)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 243
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.21 E-value=0.64 Score=34.38 Aligned_cols=72 Identities=18% Similarity=0.178 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHc--c---------------CCCCHHH-HHHhHH
Q psy8160 182 RETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVE--K---------------SEGNADT-WCSIGN 243 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~---------------~p~~~~~-~~~lg~ 243 (324)
++..|+..+.+ -+...+.+.-+.||...+++..|+.++++.++ . +|.+.+. +..+|.
T Consensus 48 EY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~ 122 (242)
T 3kae_A 48 EYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGD 122 (242)
T ss_dssp CHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHH
T ss_pred hHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHH
Confidence 55555554432 13344455555666666666666666666551 1 1222222 233556
Q ss_pred HHhhcCCCHHHHHHHH
Q psy8160 244 KDFSNNSNREDYHQAL 259 (324)
Q Consensus 244 ~~~~~~~~~~~A~~~~ 259 (324)
++.+.|. -++|+.+|
T Consensus 123 lltq~g~-r~EaI~y~ 137 (242)
T 3kae_A 123 LCTLSGY-REEGIGHY 137 (242)
T ss_dssp HHHHTTC-HHHHHHHH
T ss_pred HHHHhcC-HHHhhhHh
Confidence 6666666 66666555
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=95.15 E-value=0.16 Score=43.71 Aligned_cols=77 Identities=10% Similarity=0.025 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHhhhCCccH----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHH
Q psy8160 182 RETLAIHCLQKSIEADPKSG----------------------QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWC 239 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~----------------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 239 (324)
+.+.|...+.+++.+..... .+...++..+...|++.+|+..+..++..+|-+..+|.
T Consensus 130 ~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~ 209 (388)
T 2ff4_A 130 RFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWT 209 (388)
T ss_dssp CHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 56677777777776642111 34445677888999999999999999999999999999
Q ss_pred HhHHHHhhcCCCHHHHHHHH
Q psy8160 240 SIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 240 ~lg~~~~~~~~~~~~A~~~~ 259 (324)
.+-.++...|+ ..+|+..|
T Consensus 210 ~lm~al~~~Gr-~~~Al~~y 228 (388)
T 2ff4_A 210 QLITAYYLSDR-QSDALGAY 228 (388)
T ss_dssp HHHHHHHTTTC-HHHHHHHH
T ss_pred HHHHHHHHcCC-HHHHHHHH
Confidence 99999999999 99999988
No 245
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.92 E-value=0.16 Score=44.28 Aligned_cols=101 Identities=14% Similarity=-0.036 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHh-cCCC---CchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCC--cccHHHHH
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHLTLCL-IDAS---PCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPC--TFTKLEVR 125 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~--~~~~~~~~ 125 (324)
.++..+|..|...|+++.|.+.|.++. ...+ ....+.....++...+++..+...+.++-...... +.......
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 367899999999999999999999987 3222 23444556778888999999999999985543222 22333445
Q ss_pred HHHHHHHHHhhcHHHHHHHHHHHHhcC
Q psy8160 126 FHIAHLHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 126 ~~la~~~~~~~~~~~A~~~~~~al~~~ 152 (324)
...|..+...++|..|-..|-.+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 556788888999999999999887665
No 246
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.78 E-value=0.16 Score=38.02 Aligned_cols=69 Identities=13% Similarity=0.049 Sum_probs=48.6
Q ss_pred hhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC--------CCCHHHHHHhHHHHhhcCCCH
Q psy8160 181 HRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKS--------EGNADTWCSIGNKDFSNNSNR 252 (324)
Q Consensus 181 ~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~ 252 (324)
|+++.|.+..+.. ++...|..||......|+++-|..+|+++-..+ ..+.+-+..++.+....|+ +
T Consensus 19 g~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~-~ 92 (177)
T 3mkq_B 19 GNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTRED-F 92 (177)
T ss_dssp TCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTC-H
T ss_pred CCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCcc-H
Confidence 4888898887764 578899999999999999999999999874432 2233444445554444444 4
Q ss_pred HHH
Q psy8160 253 EDY 255 (324)
Q Consensus 253 ~~A 255 (324)
.-|
T Consensus 93 n~a 95 (177)
T 3mkq_B 93 GSM 95 (177)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=94.74 E-value=0.74 Score=45.57 Aligned_cols=98 Identities=10% Similarity=0.020 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHh--cCCCC----------------------chhhHHHHHHHHhcccHHHHHHH
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCL--IDASP----------------------CTFTKLEGLMFKVNNEYDSALKH 106 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al--~~~~~----------------------~~~~~~la~~~~~~~~~~~A~~~ 106 (324)
+...|-+|.++...|++++|..+|+++- ..... ...+.-...++...+-++.++++
T Consensus 842 ~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~f 921 (1139)
T 4fhn_B 842 PIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEF 921 (1139)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3356889999999999999999999985 21111 01233357788889999999999
Q ss_pred HHHHHHhcCCCcc-cHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q psy8160 107 LTLCLIDASPCTF-TKLEVRFHIAHLHEVQRKYKTAKDSYEQL 148 (324)
Q Consensus 107 ~~~~l~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a 148 (324)
-+.++...+.... .....|.++=..+...|+|++|...+...
T Consensus 922 a~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 922 SLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 9999987654442 23346778888888999999998877554
No 248
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=94.73 E-value=1.5 Score=36.19 Aligned_cols=95 Identities=6% Similarity=-0.157 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhc---CCCHHHHHHHHH
Q psy8160 184 TLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSN---NSNREDYHQALN 260 (324)
Q Consensus 184 ~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---~~~~~~A~~~~~ 260 (324)
.+|+.+-.+.-...-.+|+.+..+|..+...|++.+|..+|-. .+.++++....+-.-.... |. ..++ ..
T Consensus 117 ~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~---~~~~s~~~~a~~l~~w~~~~~~~~-~~e~-dl-- 189 (312)
T 2wpv_A 117 TGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML---GTHDSMIKYVDLLWDWLCQVDDIE-DSTV-AE-- 189 (312)
T ss_dssp HHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT---SCHHHHHHHHHHHHHHHHHTTCCC-HHHH-HH--
T ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh---CCCccHHHHHHHHHHHHHhcCCCC-cchH-HH--
Confidence 3455554443222335789999999999999999999998842 2222344443333222333 44 4443 22
Q ss_pred HHHhhHH-HHHHcCCCCcchHHHHHHHhh
Q psy8160 261 KYRDLGD-FLVINNIPTSNNNRQCYNSYS 288 (324)
Q Consensus 261 ~~~~lg~-~~~~~~~~~~~~A~~~~~~al 288 (324)
+...+. .|.-.++... |...|....
T Consensus 190 -f~~RaVL~yL~l~n~~~--A~~~~~~f~ 215 (312)
T 2wpv_A 190 -FFSRLVFNYLFISNISF--AHESKDIFL 215 (312)
T ss_dssp -HHHHHHHHHHHTTBHHH--HHHHHHHHH
T ss_pred -HHHHHHHHHHHhcCHHH--HHHHHHHHH
Confidence 222222 1334566666 666665543
No 249
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.52 E-value=0.46 Score=41.62 Aligned_cols=100 Identities=16% Similarity=0.080 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHh-cC-CC-C----chhhHHHHHHHHhcccHHHHHHHHHHHHH---hcCCCcccH
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHLTLCL-ID-AS-P----CTFTKLEGLMFKVNNEYDSALKHLTLCLI---DASPCTFTK 121 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~~~al-~~-~~-~----~~~~~~la~~~~~~~~~~~A~~~~~~~l~---~~~~~~~~~ 121 (324)
.+...|+.++...|++.+|.+.+.... .- .. + ...+.....++...+++..|...++++.. ..+..+..+
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 456789999999999999999999877 21 11 1 23444468899999999999999998742 233333345
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHHHHHhc
Q psy8160 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151 (324)
Q Consensus 122 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 151 (324)
...+...|.++...++|.+|-.+|..+...
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 566777899999999999999999998764
No 250
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.27 E-value=0.34 Score=42.84 Aligned_cols=132 Identities=14% Similarity=0.066 Sum_probs=57.6
Q ss_pred HHhcccHHHHHHHHHHHHH--hcC-CC----cccHHHHHHHHHHHHHHhhcHHHHH----------HHHHHHHhcCCC--
Q psy8160 94 FKVNNEYDSALKHLTLCLI--DAS-PC----TFTKLEVRFHIAHLHEVQRKYKTAK----------DSYEQLLKEDDL-- 154 (324)
Q Consensus 94 ~~~~~~~~~A~~~~~~~l~--~~~-~~----~~~~~~~~~~la~~~~~~~~~~~A~----------~~~~~al~~~~~-- 154 (324)
+..++++++|.++-...+. .-. .+ ....+.+||..+.++...|+..... ..+-.++.....
T Consensus 146 L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~ 225 (523)
T 4b4t_S 146 LWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKH 225 (523)
T ss_dssp ---------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCS
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhccc
Confidence 3456788888887765541 111 00 1122356777777777777654421 122222221110
Q ss_pred CCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCcc-------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8160 155 PVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS-------GQSLYLLGRCFAAVGKVHDAFLAYRNS 227 (324)
Q Consensus 155 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~a 227 (324)
.....+.++..+-+.|.. .+.+++|..+..++. .|.+ ...+|.+|.++...++|.+|..++..|
T Consensus 226 D~~~qa~l~nllLRnYL~-------~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A 296 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLN-------NGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAA 296 (523)
T ss_dssp SSCHHHHHHHHHHHHHHH-------SSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHc-------cCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 223447777777777766 347899999999984 3322 356788999999999999999999999
Q ss_pred HccCCCC
Q psy8160 228 VEKSEGN 234 (324)
Q Consensus 228 l~~~p~~ 234 (324)
+...|.+
T Consensus 297 ~rkap~~ 303 (523)
T 4b4t_S 297 IRKAPHN 303 (523)
T ss_dssp TSSCSCS
T ss_pred HHhCCcc
Confidence 9988765
No 251
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.25 E-value=1 Score=36.15 Aligned_cols=57 Identities=16% Similarity=0.155 Sum_probs=38.5
Q ss_pred HhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCc
Q psy8160 95 KVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVH 157 (324)
Q Consensus 95 ~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~ 157 (324)
...|+.++|++..+..++..|.+. +....+-.++...|++++|..-++.+.+++ |..
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~da----~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~--p~~ 64 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPKDA----SLRSSFIELLCIDGDFERADEQLMQSIKLF--PEY 64 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGG
T ss_pred HhCCCHHHHHHHHHHHHHhCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chh
Confidence 345666667776666777666665 556666666777777777777777777777 554
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.13 E-value=2.7 Score=36.70 Aligned_cols=193 Identities=13% Similarity=0.062 Sum_probs=113.3
Q ss_pred HHHHHHHHHHhc---cCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHH----HHHHhcccHH-
Q psy8160 31 IKAIKTFQQLLY---VDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEG----LMFKVNNEYD- 101 (324)
Q Consensus 31 ~~A~~~~~~~l~---~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la----~~~~~~~~~~- 101 (324)
+.|++.+..+-+ ...+.+....+...+..++...++|+...+++.... .....-.+...+- .........+
T Consensus 33 ~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~ 112 (445)
T 4b4t_P 33 NSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDL 112 (445)
T ss_dssp HHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHH
T ss_pred HHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhH
Confidence 556665533322 233334456678888889999999998877775433 2111111111110 0111111111
Q ss_pred -HHHHHHHHHHHhcCCCcc---cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC-C-CCCchhhHHHHHHHHHHHhhhh
Q psy8160 102 -SALKHLTLCLIDASPCTF---TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED-D-LPVHLKADICRQLGWMYHCIDT 175 (324)
Q Consensus 102 -~A~~~~~~~l~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~-~~~~~~~~~~~~l~~~~~~~~~ 175 (324)
.-+...+..-.......+ ..+.+...|+.++...|++.+|...+..+.... + .+.....+.+....+++..
T Consensus 113 ~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~--- 189 (445)
T 4b4t_P 113 NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL--- 189 (445)
T ss_dssp HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH---
Confidence 111111111111111111 245677889999999999999999998876432 1 1222235566666777755
Q ss_pred hcccchhHHHHHHHHHHHhh---hCCccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Q psy8160 176 LGEKSHRETLAIHCLQKSIE---ADPKSG----QSLYLLGRCFAAVGKVHDAFLAYRNSVEK 230 (324)
Q Consensus 176 ~~~~~~~~~~A~~~~~~al~---~~~~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 230 (324)
.+++.+|...+.++.. ..+..+ ..+...|.++...++|.+|-.+|..+...
T Consensus 190 ----~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 190 ----KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp ----HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred ----CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4589999999998742 223333 46677899999999999999999999764
No 253
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=93.63 E-value=1.8 Score=40.72 Aligned_cols=161 Identities=11% Similarity=-0.029 Sum_probs=90.1
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH
Q psy8160 55 LRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEV 134 (324)
Q Consensus 55 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~ 134 (324)
..+...+...|.++.|++..+ +| ...-.+....|++++|.+..+.. .+ ...|..+|..+..
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~----~~------~~~f~~~l~~~~~~~A~~~~~~~-----~~----~~~W~~la~~al~ 693 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP----DQ------DQKFELALKVGQLTLARDLLTDE-----SA----EMKWRALGDASLQ 693 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC----CH------HHHHHHHHHHTCHHHHHHHHTTC-----CC----HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCC----Cc------chheehhhhcCCHHHHHHHHHhh-----Cc----HhHHHHHHHHHHH
Confidence 555666677788887776554 11 11133445678888888854321 12 2678889999999
Q ss_pred hhcHHHHHHHHHHHHhcCC------CCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 135 QRKYKTAKDSYEQLLKEDD------LPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 135 ~~~~~~A~~~~~~al~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
.++++.|+.+|.++-.... ...+ .+.+..++..... .+++..|...|.+. - +.+ .--
T Consensus 694 ~~~~~~A~~~y~~~~d~~~l~~l~~~~~~--~~~~~~~~~~a~~-------~~~~~~A~~~~~~~--g---~~~---~a~ 756 (814)
T 3mkq_A 694 RFNFKLAIEAFTNAHDLESLFLLHSSFNN--KEGLVTLAKDAET-------TGKFNLAFNAYWIA--G---DIQ---GAK 756 (814)
T ss_dssp TTCHHHHHHHHHHHTCHHHHHHHHHHTTC--HHHHHHHHHHHHH-------TTCHHHHHHHHHHH--T---CHH---HHH
T ss_pred cCCHHHHHHHHHHccChhhhHHHHHHcCC--HHHHHHHHHHHHH-------cCchHHHHHHHHHc--C---CHH---HHH
Confidence 9999999998887522110 0111 1123333333322 33566666555442 1 111 123
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCC---HHHHHHhHHHHhhcCCCHHHH
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEKSEGN---ADTWCSIGNKDFSNNSNREDY 255 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~~A 255 (324)
.+|...+++++|+...++ ..|.. +......+.-+...|+ .+.|
T Consensus 757 ~~~~~~~~~~~A~~lA~~---~~~~~~~i~~~~~~~~~~L~~~~~-~~~a 802 (814)
T 3mkq_A 757 DLLIKSQRFSEAAFLGST---YGLGDNEVNDIVTKWKENLILNGK-NTVS 802 (814)
T ss_dssp HHHHHTTCHHHHHHHHHH---TTCCHHHHHHHHHHHHHHHHTTTC-HHHH
T ss_pred HHHHHcCChHHHHHHHHH---hCCChHHHHHHHHHHHHHHHhccc-hhHH
Confidence 567778888888876654 44433 3444455555566665 5433
No 254
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.63 E-value=1.7 Score=37.17 Aligned_cols=90 Identities=16% Similarity=0.041 Sum_probs=65.0
Q ss_pred HHhhcHHHHHHHHHHHHhcCCCC------Cchhh------------HHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHh
Q psy8160 133 EVQRKYKTAKDSYEQLLKEDDLP------VHLKA------------DICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSI 194 (324)
Q Consensus 133 ~~~~~~~~A~~~~~~al~~~~~~------~~~~~------------~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al 194 (324)
...|+.+.|...+++++.+-.-| ..... .+...++..+. ..|++.+++..+..++
T Consensus 126 ~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l-------~~g~~~~a~~~l~~~~ 198 (388)
T 2ff4_A 126 AAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEI-------ACGRASAVIAELEALT 198 (388)
T ss_dssp HHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHH-------HTTCHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-------HCCCHHHHHHHHHHHH
Confidence 34578888888888888774211 10000 01111222221 2558999999999999
Q ss_pred hhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy8160 195 EADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVE 229 (324)
Q Consensus 195 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 229 (324)
..+|.+..+|..+-.++...|+..+|+..|+++..
T Consensus 199 ~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 199 FEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988754
No 255
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=92.98 E-value=2.1 Score=34.27 Aligned_cols=112 Identities=8% Similarity=-0.056 Sum_probs=81.4
Q ss_pred chhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHH-
Q psy8160 180 SHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQA- 258 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~- 258 (324)
.+..++|+......++.+|.+.+....+-..+.-.|+++.|...++.+.+++|.....-..+..+ =. -+.+...
T Consensus 10 ~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l----I~-aE~~R~~v 84 (273)
T 1zbp_A 10 EGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL----VK-AAQARKDF 84 (273)
T ss_dssp TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH----HH-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH----HH-HHHHHHHH
Confidence 45899999999999999999999999999999999999999999999999999865432111111 00 1111111
Q ss_pred H------------HHH---HhhHHHHHHcCCCCcchHHHHHHHhhhcCCChhhhh
Q psy8160 259 L------------NKY---RDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHIN 298 (324)
Q Consensus 259 ~------------~~~---~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 298 (324)
| ..| .--+......|+.++ |...-.+|++.-|..+...
T Consensus 85 faG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~--A~~lr~~A~e~ap~~~G~~ 137 (273)
T 1zbp_A 85 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQ--VSELALQIEELRQEKGFLA 137 (273)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHH--HHHHHHHHHHHCCCCCEEE
T ss_pred HcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHH--HHHHHHHHHhcCcccCCCc
Confidence 1 222 223444556789999 9999999999888766533
No 256
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.95 E-value=0.77 Score=43.88 Aligned_cols=241 Identities=12% Similarity=0.031 Sum_probs=121.2
Q ss_pred HHHHHHHHHHhccC--CCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCC-------Cc----hhhHHHHHHHHhc
Q psy8160 31 IKAIKTFQQLLYVD--PSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDAS-------PC----TFTKLEGLMFKVN 97 (324)
Q Consensus 31 ~~A~~~~~~~l~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-------~~----~~~~~la~~~~~~ 97 (324)
++++....+.+... .+......+.+.+|.++...++ +++..+...+.+++ .. .+...+|.++.-.
T Consensus 391 ~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS 468 (963)
T 4ady_A 391 LEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGS 468 (963)
T ss_dssp TTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCC
Confidence 56666666655421 1111124467888888776664 57887777772222 11 2233466666655
Q ss_pred ccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhc
Q psy8160 98 NEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLG 177 (324)
Q Consensus 98 ~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 177 (324)
++ +++.+.+..++..... .....+-+.+|.++...|+-+-....+..+.... .+.....+-..+|.+++.
T Consensus 469 ~~-eev~e~L~~~L~dd~~--~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~--~e~vrR~aalgLGll~~g----- 538 (963)
T 4ady_A 469 AN-IEVYEALKEVLYNDSA--TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ--HGNITRGLAVGLALINYG----- 538 (963)
T ss_dssp CC-HHHHHHHHHHHHTCCH--HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTT-----
T ss_pred CC-HHHHHHHHHHHhcCCH--HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHhhhCC-----
Confidence 54 3555656666653322 1122456677888888887655555555544432 333333345555555532
Q ss_pred ccchhHHHHHHHHHHHhhhCCccHHH----HHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHH
Q psy8160 178 EKSHRETLAIHCLQKSIEADPKSGQS----LYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNRE 253 (324)
Q Consensus 178 ~~~~~~~~A~~~~~~al~~~~~~~~~----~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~ 253 (324)
+.+.+....+. +... .++.. -+.+|..|...|+...-...++.+..-..++......+|......|+ .+
T Consensus 539 ----~~e~~~~li~~-L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~-~e 611 (963)
T 4ady_A 539 ----RQELADDLITK-MLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRD-YT 611 (963)
T ss_dssp ----CGGGGHHHHHH-HHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSS-CS
T ss_pred ----ChHHHHHHHHH-HHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCC-HH
Confidence 44434444333 3322 23333 34567778888886544446666654332232222233333334444 43
Q ss_pred HHHHHH-------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCCh
Q psy8160 254 DYHQAL-------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASC 294 (324)
Q Consensus 254 ~A~~~~-------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~ 294 (324)
.+.+.+ .+-..||.+....+ ..+ +++.+..... |+++
T Consensus 612 ~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~-~~~--aid~L~~L~~-D~d~ 661 (963)
T 4ady_A 612 TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKG-LQS--AIDVLDPLTK-DPVD 661 (963)
T ss_dssp SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSC-CHH--HHHHHHHHHT-CSSH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCC-cHH--HHHHHHHHcc-CCCH
Confidence 333332 33344554442222 245 7777776653 5543
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.27 E-value=5 Score=39.76 Aligned_cols=52 Identities=6% Similarity=-0.058 Sum_probs=32.1
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLL 149 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 149 (324)
+...+...+.++-+.+. +.-.+.++ -..+.+|.++...|++++|..+|+++-
T Consensus 818 l~~~l~~~~~~~~~~~l----~~~~~~~~----~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQL----IGWLNSDP----IAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHSCTTHHHHH----HHHSCCCH----HHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhhhHHHHHHH----hhhccCCc----HHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 44445555666555542 22222222 345778888888888888888888763
No 258
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.04 E-value=4.7 Score=38.66 Aligned_cols=224 Identities=11% Similarity=0.076 Sum_probs=113.3
Q ss_pred HHHHHHHHHHhccCCC-------cccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCc---hhhHHHHHHHHhcccH
Q psy8160 31 IKAIKTFQQLLYVDPS-------YLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPC---TFTKLEGLMFKVNNEY 100 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~-------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~la~~~~~~~~~ 100 (324)
++++..+...+..+.. ......+...||.++.-.++ +++.+.+..++.+.+.. .+...+|.++.-.|+-
T Consensus 428 ~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~ 506 (963)
T 4ady_A 428 RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP 506 (963)
T ss_dssp HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH
Confidence 5688877777754420 01112356788888887766 45677777777333221 2344578888888887
Q ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccc
Q psy8160 101 DSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKS 180 (324)
Q Consensus 101 ~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 180 (324)
+.....+..+.... .. ...-...+|..+...|+.+.+-...+.+.... ....+..+...+|..|.. .
T Consensus 507 ~ai~~LL~~~~e~~--~e--~vrR~aalgLGll~~g~~e~~~~li~~L~~~~--dp~vRygaa~alglAyaG-------T 573 (963)
T 4ady_A 507 EAIHDMFTYSQETQ--HG--NITRGLAVGLALINYGRQELADDLITKMLASD--ESLLRYGGAFTIALAYAG-------T 573 (963)
T ss_dssp HHHHHHHHHHHHCS--CH--HHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS--CHHHHHHHHHHHHHHTTT-------S
T ss_pred HHHHHHHHHHhccC--cH--HHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHhcC-------C
Confidence 77776666655422 11 11111223333445677666665655544433 333333344445555532 4
Q ss_pred hhHHHHHH-HHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHH----hHHHHhhcCCCHHHH
Q psy8160 181 HRETLAIH-CLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCS----IGNKDFSNNSNREDY 255 (324)
Q Consensus 181 ~~~~~A~~-~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~----lg~~~~~~~~~~~~A 255 (324)
|+. .|++ .+..+.+...++..-.--+|......|+.+.+...+..... ..++.+.+. +|.+....+ ..++
T Consensus 574 Gn~-~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~--~~~a 648 (963)
T 4ady_A 574 GNN-SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKG--LQSA 648 (963)
T ss_dssp CCH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSC--CHHH
T ss_pred CCH-HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCC--cHHH
Confidence 453 4555 55555433222332222334444445555444444433322 234554443 344333333 3566
Q ss_pred HHHH-------------HHHHhhHHHHHHcC
Q psy8160 256 HQAL-------------NKYRDLGDFLVINN 273 (324)
Q Consensus 256 ~~~~-------------~~~~~lg~~~~~~~ 273 (324)
+..+ .+...||.+-...+
T Consensus 649 id~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 649 IDVLDPLTKDPVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHhcCCc
Confidence 6665 45566666665444
No 259
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=90.12 E-value=6.1 Score=38.36 Aligned_cols=101 Identities=11% Similarity=-0.076 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-c----CCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-I----DASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFH 127 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 127 (324)
.+..+-..|.+.|+.++|.+.|.... . -.-+...+..+-.-|...|+.++|.+.|++.....-... ...+..
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD---vvTYnt 205 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD---LLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC---HHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc---HHHHHH
Confidence 46677788999999999999996643 1 233455667777888999999999999999876533222 245666
Q ss_pred HHHHHHHhhcH-HHHHHHHHHHHhcCCCCC
Q psy8160 128 IAHLHEVQRKY-KTAKDSYEQLLKEDDLPV 156 (324)
Q Consensus 128 la~~~~~~~~~-~~A~~~~~~al~~~~~~~ 156 (324)
+-.++...|+. ++|.+.|++.....-.|+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD 235 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQ 235 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCC
Confidence 66677788874 788899999887764444
No 260
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.56 E-value=0.22 Score=44.09 Aligned_cols=113 Identities=6% Similarity=-0.011 Sum_probs=52.8
Q ss_pred chhHHHHHHHHHHHh-----------hhCCccHHHHHHHHHHHHHcCCHHHHH--------------HHHHHHH-ccCCC
Q psy8160 180 SHRETLAIHCLQKSI-----------EADPKSGQSLYLLGRCFAAVGKVHDAF--------------LAYRNSV-EKSEG 233 (324)
Q Consensus 180 ~~~~~~A~~~~~~al-----------~~~~~~~~~~~~lg~~~~~~~~~~~A~--------------~~~~~al-~~~p~ 233 (324)
.+++++|..+-...+ .+++-.+.+|+..+.++...|+..... ..++.|. ..|+.
T Consensus 149 ~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~ 228 (523)
T 4b4t_S 149 SKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNE 228 (523)
T ss_dssp ------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSCSSSC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcc
Confidence 336777777665543 124445678998888888887765432 1222221 22332
Q ss_pred C-HHHHHHhHHHHhhcCCCHHHHHHHH----------------HHHHhhHHHHHHcCCCCcchHHHHHHHhhhcCCChh
Q psy8160 234 N-ADTWCSIGNKDFSNNSNREDYHQAL----------------NKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCK 295 (324)
Q Consensus 234 ~-~~~~~~lg~~~~~~~~~~~~A~~~~----------------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~~~p~~~ 295 (324)
. +..+..+-..|...+. +++|.... .-++.+|.++.-+++|.+ |.+++..|+..-|.+.
T Consensus 229 ~qa~l~nllLRnYL~~~~-y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~e--A~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 229 TKAMLINLILRDFLNNGE-VDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYST--ANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHHHHSSC-STTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHTSSCSCSS
T ss_pred hhHHHHHHHHHHHHccCc-HHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHH--HHHHHHHHHHhCCcch
Confidence 2 4567778888999999 99998877 456789999999999999 9999999999887654
No 261
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=89.40 E-value=13 Score=34.06 Aligned_cols=122 Identities=7% Similarity=-0.013 Sum_probs=70.1
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
+.-.....+.+.|...+....................+++-... .+...++...+.+.....+++...-...+
T Consensus 221 ~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~e~~~r 293 (618)
T 1qsa_A 221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMG-------NDVTDEQAKWRDDAIMRSQSTSLIERRVR 293 (618)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCS-------TTCCHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHH-------cCCChHHHHHHHhccccCCChHHHHHHHH
Confidence 43344556778888888776544321211111222222222211 11245566667665544433332222233
Q ss_pred HHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
..+..|+++.|..+|.+.-...+..+...+.+|..+...|+ .++|...|
T Consensus 294 -~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~-~~~a~~~~ 342 (618)
T 1qsa_A 294 -MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGR-EAEAKEIL 342 (618)
T ss_dssp -HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred -HHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCC-HHHHHHHH
Confidence 34566899999998877655434567778888888889999 88888877
No 262
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=84.65 E-value=8.3 Score=37.43 Aligned_cols=77 Identities=9% Similarity=-0.026 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHHhhh----CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc--CCCCHHHHHHhHHHHhhcCCCH-H
Q psy8160 181 HRETLAIHCLQKSIEA----DPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK--SEGNADTWCSIGNKDFSNNSNR-E 253 (324)
Q Consensus 181 ~~~~~A~~~~~~al~~----~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~-~ 253 (324)
|+.++|...|.+..+. ..-+..+|..|-..+...|+.++|.+.|++.... .| +..++..+-.++.+.|+ . +
T Consensus 141 G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYntLI~glcK~G~-~~e 218 (1134)
T 3spa_A 141 DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAAALQCMGRQDQ-DAG 218 (1134)
T ss_dssp TCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTC-CHH
T ss_pred CCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHHhCCC-cHH
Confidence 3666777766553221 1224556666666666777777777777666543 24 44555555556666665 4 4
Q ss_pred HHHHHH
Q psy8160 254 DYHQAL 259 (324)
Q Consensus 254 ~A~~~~ 259 (324)
+|.+.|
T Consensus 219 ~A~~Ll 224 (1134)
T 3spa_A 219 TIERCL 224 (1134)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555555
No 263
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=83.84 E-value=26 Score=32.03 Aligned_cols=237 Identities=8% Similarity=-0.020 Sum_probs=126.4
Q ss_pred HHHHHhccCCCcccchHHHHHHHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcC
Q psy8160 36 TFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDAS 115 (324)
Q Consensus 36 ~~~~~l~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 115 (324)
-....+...|+.|....+....-......+++..-+..+.. .|.+..............|+..+|.....++.....
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~---~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~ 133 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE---KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK 133 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC---CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Confidence 44555666777665544444433444456777765554442 355555555566667777887777777776654332
Q ss_pred CCcc---------------cHHHHHHHHHHHHHHhhcHHHHHHHHHH-------------HHhcCCCCCchhhH------
Q psy8160 116 PCTF---------------TKLEVRFHIAHLHEVQRKYKTAKDSYEQ-------------LLKEDDLPVHLKAD------ 161 (324)
Q Consensus 116 ~~~~---------------~~~~~~~~la~~~~~~~~~~~A~~~~~~-------------al~~~~~~~~~~~~------ 161 (324)
..+. +..+++..+ ......|+...|...... ++..+ |......
T Consensus 134 ~~p~~c~~l~~~~~~~g~lt~~~~~~R~-~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~--p~~~~~~~~~~~~ 210 (618)
T 1qsa_A 134 SQPNACDKLFSVWRASGKQDPLAYLERI-RLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN--PNTVLTFARTTGA 210 (618)
T ss_dssp CCCTHHHHHHHHHHHTTCSCHHHHHHHH-HHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC--GGGHHHHHHHSCC
T ss_pred CCcHHHHHHHHHHHHCCCCCHHHHHHHH-HHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC--hHhHHHHHhccCC
Confidence 2211 111122221 223333444333322221 11112 2221100
Q ss_pred -----HHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHH----HHHHHHHHHHHcCCHHHHHHHHHHHHccCC
Q psy8160 162 -----ICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQ----SLYLLGRCFAAVGKVHDAFLAYRNSVEKSE 232 (324)
Q Consensus 162 -----~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 232 (324)
.....+..... ..+.+.|...+.......+-+.. .+..+|.-....+...++..++.++....+
T Consensus 211 ~~~~~~~~~~~~~rla-------r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~ 283 (618)
T 1qsa_A 211 TDFTRQMAAVAFASVA-------RQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ 283 (618)
T ss_dssp CHHHHHHHHHHHHHHH-------HHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC
T ss_pred ChhhHHHHHHHHHHHH-------hcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC
Confidence 00011111111 23667888888776543333332 233344344444535677788877665444
Q ss_pred CCHHHHHHhHHHHhhcCCCHHHHHHHH-----------HHHHhhHHHHHHcCCCCcchHHHHHHHhhh
Q psy8160 233 GNADTWCSIGNKDFSNNSNREDYHQAL-----------NKYRDLGDFLVINNIPTSNNNRQCYNSYST 289 (324)
Q Consensus 233 ~~~~~~~~lg~~~~~~~~~~~~A~~~~-----------~~~~~lg~~~~~~~~~~~~~A~~~~~~al~ 289 (324)
++...-...+ .....|+ +..|...+ ...+-+|..+...|+.++ |...|+++..
T Consensus 284 ~~~~~e~~~r-~Alr~~d-~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~--a~~~~~~~a~ 347 (618)
T 1qsa_A 284 STSLIERRVR-MALGTGD-RRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAE--AKEILHQLMQ 347 (618)
T ss_dssp CHHHHHHHHH-HHHHHTC-HHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHH--HHHHHHHHHT
T ss_pred ChHHHHHHHH-HHHHCCC-HHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHH--HHHHHHHHhc
Confidence 3333323333 3456799 99999999 567889999999999999 9999999876
No 264
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=82.73 E-value=0.0015 Score=56.94 Aligned_cols=104 Identities=10% Similarity=0.058 Sum_probs=68.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH-------------------HHHHhhHHH
Q psy8160 208 GRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL-------------------NKYRDLGDF 268 (324)
Q Consensus 208 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~-------------------~~~~~lg~~ 268 (324)
-..|...|-+++=+..++.++.+..-+....+.||.+|.+-. +++-.+++ ..|..+-.+
T Consensus 236 v~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY~--PeKlmEHlklf~sriNipKviracE~ahLW~ElvfL 313 (624)
T 3lvg_A 236 INYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK--PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL 313 (624)
T ss_dssp GSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSSC--TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhcC--HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHH
Confidence 345667788888888899999888888899999998887654 45555555 567888888
Q ss_pred HHHcCCCCcchHHHHHHHhhhcCCChhhhhhchhhh----ccCChhhHHHHHHHHhh
Q psy8160 269 LVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFS----NNSNREDYHQALNKYRD 321 (324)
Q Consensus 269 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~----~~~~~~~~~~a~~~~~~ 321 (324)
|.+-.+++. |+. .+....+.++..-.|. +....+-|.+|+.=|-+
T Consensus 314 Y~~ydE~Dn--A~l------tMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~ 362 (624)
T 3lvg_A 314 YDKYEEYDN--AII------TMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE 362 (624)
T ss_dssp HHHHTCHHH--HHH------TTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTT
T ss_pred HhcchhHHH--HHH------HHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 887777776 432 3322223333333222 22445667777765543
No 265
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=81.03 E-value=11 Score=36.40 Aligned_cols=109 Identities=12% Similarity=-0.003 Sum_probs=61.3
Q ss_pred HHHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhc-C------------------CC
Q psy8160 57 LGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDA-S------------------PC 117 (324)
Q Consensus 57 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-~------------------~~ 117 (324)
+...+...+.++-|.+... --|.+....+.+|.++...|++++|..+|+++-..- . +.
T Consensus 816 l~~~L~~~~~~~~a~eL~~---~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~ 892 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIG---WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHH 892 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGG---GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTT
T ss_pred HHHHHHHhcHHHHHHHHHh---hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccc
Confidence 4444455555554433111 334444445666666666666666666666652110 0 00
Q ss_pred cccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCC-CCchhhHHHHHHHH
Q psy8160 118 TFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDL-PVHLKADICRQLGW 168 (324)
Q Consensus 118 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~ 168 (324)
......-|..+..++...+-++.+++.-+.|+..-.. ......++|.++=.
T Consensus 893 ~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~ 944 (950)
T 4gq2_M 893 QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLK 944 (950)
T ss_dssp CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 1111235678899999999999999999999965321 22233556655533
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=77.48 E-value=13 Score=28.30 Aligned_cols=73 Identities=12% Similarity=0.029 Sum_probs=49.5
Q ss_pred CCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCC
Q psy8160 80 DASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLP 155 (324)
Q Consensus 80 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 155 (324)
||.....|...+..+ ..+...++...|.-.....-.... +..+..-|..+...|++.+|.+.|+..++....|
T Consensus 76 D~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~--AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 76 DPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKL--SLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp CHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTB--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 455555555556554 234466778888777665444332 2456667888899999999999999999887444
No 267
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=77.45 E-value=30 Score=28.76 Aligned_cols=40 Identities=13% Similarity=0.036 Sum_probs=29.3
Q ss_pred HHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHH
Q psy8160 185 LAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAY 224 (324)
Q Consensus 185 ~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 224 (324)
+|+.+-.+.=...-.+++....+|..++..+++.+|..+|
T Consensus 120 ~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 120 EMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4555544422223457889999999999999999999988
No 268
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=77.12 E-value=29 Score=28.50 Aligned_cols=41 Identities=12% Similarity=-0.047 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 218 HDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 218 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
..|+.|-.+.-...-.+|+.+..+|..|...++ +.+|..+|
T Consensus 117 ~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~-~~~A~~H~ 157 (312)
T 2wpv_A 117 TGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDF-VYEAERYF 157 (312)
T ss_dssp HHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCC-HHHHHHHH
Confidence 456666655533345789999999999999999 99999887
No 269
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=75.31 E-value=6 Score=24.54 Aligned_cols=32 Identities=22% Similarity=0.500 Sum_probs=25.6
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHh-cCCCCchh
Q psy8160 55 LRLGLMFKVNNEYDSALKHLTLCL-IDASPCTF 86 (324)
Q Consensus 55 ~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~ 86 (324)
..+|..+...|++++|..+|-+|+ ..|.....
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 578888889999999999999888 76665443
No 270
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=69.77 E-value=15 Score=22.70 Aligned_cols=33 Identities=15% Similarity=0.133 Sum_probs=27.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHH
Q psy8160 205 YLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADT 237 (324)
Q Consensus 205 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 237 (324)
..+|..+...|++++|..+|-+|+...|.-.+.
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~L 53 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQL 53 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 467888999999999999999999988875544
No 271
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=68.75 E-value=11 Score=28.77 Aligned_cols=33 Identities=15% Similarity=0.047 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCC
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN 234 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 234 (324)
...|.+|.+++..++|.+|...+..|+...|..
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 445666777777777777777777777666654
No 272
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=65.63 E-value=1e+02 Score=29.86 Aligned_cols=117 Identities=7% Similarity=-0.086 Sum_probs=65.0
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHH
Q psy8160 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWM 169 (324)
Q Consensus 90 la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~ 169 (324)
+...+...|.++-+.+ .+.-.|.++ -..|.+|.++...|++++|..+|+++-.--. ..............
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~----~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~-~~~~~~~~~~~~~~- 885 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDP----IAVYLKALIYLKSKEAVKAVRCFKTTSLVLY-SHTSQFAVLREFQE- 885 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSH----HHHHHHHHHHHHTTCHHHHHHHHHTCCCTTC-SSCCSCGGGHHHHH-
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHhhhcc-cCcccccchhhhhh-
Confidence 4445555666665544 332233332 3457788888888888888888887632110 11100000000000
Q ss_pred HHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHcc-CCCCHH
Q psy8160 170 YHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK-SEGNAD 236 (324)
Q Consensus 170 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~ 236 (324)
.+ ...+........|..+..++...+-++-++...+.|++. .++++.
T Consensus 886 -------------------ll-~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 886 -------------------IA-EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp -------------------HH-HHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred -------------------cc-CcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 00 111112222346777888899999999999999999964 445544
No 273
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=65.19 E-value=55 Score=28.07 Aligned_cols=104 Identities=16% Similarity=0.294 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-----cCCCCH
Q psy8160 161 DICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVE-----KSEGNA 235 (324)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-----~~p~~~ 235 (324)
.....+-|+++....+. +|.-|+..+-..-+..|..... .++..|.+|+. ....+.
T Consensus 258 ~LQq~LLWlLyd~GhL~----rYPmALgnLgDLEe~~pt~gr~---------------~~~~L~~~AI~sa~~~Y~n~Hv 318 (550)
T 3u84_A 258 QLQQKLLWLLYDLGHLE----RYPMALGNLADLEELEPTPGRP---------------DPLTLYHKGIASAKTYYRDEHI 318 (550)
T ss_dssp HHHHHHHHHHHHTTTTT----TCHHHHHHHHHHHHHSCCTTCC---------------CHHHHHHHHHHHHHHHSTTCCS
T ss_pred HHHHHHHHHHHhccchh----hCchhhcchhhHhhcCCCCCCC---------------CHHHHHHHHHHHHHHHhccCCc
Confidence 34556667776654444 6666766666666665543211 13444444443 234567
Q ss_pred HHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhh
Q psy8160 236 DTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYST 289 (324)
Q Consensus 236 ~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~ 289 (324)
--+..+|-.+++.++ +.+|+.+ |..-+.+-..-+-..+ =.+.|+..++
T Consensus 319 YPYtYlgGy~yR~~~-~reAl~~---WA~Aa~Vi~~YNY~re--DeEIYKEf~e 366 (550)
T 3u84_A 319 YPYMYLAGYHCRNRN-VREALQA---WADTATVIQDYNYCRE--DEEIYKEFFE 366 (550)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHH---HHHHHHHHTTSCCCGG--GHHHHHHHHH
T ss_pred cceeecchhhhhcch-HHHHHHH---HHHHHHHHHHcCCCcc--hHHHHHHHHH
Confidence 778899999999999 9999876 5555555544443333 3444444444
No 274
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=64.32 E-value=15 Score=27.99 Aligned_cols=34 Identities=9% Similarity=0.109 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCc
Q psy8160 51 NEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPC 84 (324)
Q Consensus 51 ~~~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~ 84 (324)
...++.+|.++..+++|.+|.++|..|+ ..|...
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 3467889999999999999999999998 655543
No 275
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=63.05 E-value=7.4 Score=25.55 Aligned_cols=29 Identities=24% Similarity=0.556 Sum_probs=23.9
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHh-cCCCC
Q psy8160 55 LRLGLMFKVNNEYDSALKHLTLCL-IDASP 83 (324)
Q Consensus 55 ~~lg~~~~~~~~~~~A~~~~~~al-~~~~~ 83 (324)
..+|..+...|+++.|+.+|-+|+ ..|..
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 578999999999999999999887 54443
No 276
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=62.50 E-value=49 Score=25.16 Aligned_cols=62 Identities=11% Similarity=0.123 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh---cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcC
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL---IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDAS 115 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 115 (324)
+|...+..+ ..++..++...|.... +....+.++...|..+...|++.+|.+.|+..+....
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 444444433 1333667888887766 5577777888899999999999999999999997654
No 277
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=60.56 E-value=8.1 Score=24.32 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHh
Q psy8160 54 HLRLGLMFKVNNEYDSALKHLTLCL 78 (324)
Q Consensus 54 ~~~lg~~~~~~~~~~~A~~~~~~al 78 (324)
...+|+-|...|+|+.|+.+|+.++
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~ 39 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVL 39 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHH
Confidence 5678888888899999988888544
No 278
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=59.67 E-value=9 Score=26.33 Aligned_cols=15 Identities=27% Similarity=0.581 Sum_probs=6.8
Q ss_pred cCCHHHHHHHHHHHH
Q psy8160 214 VGKVHDAFLAYRNSV 228 (324)
Q Consensus 214 ~~~~~~A~~~~~~al 228 (324)
.|++++|+.+|..++
T Consensus 31 ag~y~eAl~lY~~Ai 45 (117)
T 2cpt_A 31 AGNYEEALQLYQHAV 45 (117)
T ss_dssp HTCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH
Confidence 344444444444443
No 279
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=59.62 E-value=78 Score=26.59 Aligned_cols=64 Identities=11% Similarity=0.196 Sum_probs=39.9
Q ss_pred HHHHHHHHHcc-----CCCCHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhhHHHHHHcCCCCcchHHHHHHHhhh
Q psy8160 220 AFLAYRNSVEK-----SEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYST 289 (324)
Q Consensus 220 A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~~~~A~~~~~~~~~lg~~~~~~~~~~~~~A~~~~~~al~ 289 (324)
++..|.+|+.. ...+.-.+..+|..+++.++ +.+|+.+ |..-+.+-..-+-..+ =.+.|+..++
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~-~reAl~~---WA~Aa~Vi~~YNY~re--DeEIYKEf~e 344 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKK-YYEAIAS---WVDAGYVAGKYNYSKD--DEEMYKEFHE 344 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTC-HHHHHHH---HHHHHHHHTTSCCCGG--GHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcch-HHHHHHH---HHHHHHHHHHcCCCcc--HHHHHHHHHH
Confidence 55555555542 34566778899999999999 9999886 5555555444443333 3345544443
No 280
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=58.68 E-value=38 Score=24.61 Aligned_cols=85 Identities=18% Similarity=0.192 Sum_probs=48.7
Q ss_pred HHHHHHhhcHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHH
Q psy8160 129 AHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208 (324)
Q Consensus 129 a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg 208 (324)
+...+...+|.+.++.++.. + |........+.+|..|...+.++ ++........+.+.. ++. +.+=
T Consensus 15 a~~afl~~dYs~VI~~L~~~---~--~~~Lp~~~kY~LA~SYI~~e~Ls------~eQKenIln~itlkS-de~--yL~Y 80 (161)
T 2ynq_A 15 STELFLQNKYSDVITTLEDY---A--PEDMPYVIQYELASSYVMTESLT------EEQRQTVSNNITLKT-DEQ--YMLY 80 (161)
T ss_dssp HHHHHTTTCHHHHHHHHTTS---C--GGGSCHHHHHHHHHHHHHTSSSC------HHHHHHHHHTCCTTS-CHH--HHHH
T ss_pred HHHHHHHhhHHHHHHHHhcC---C--hhhCChhHHHHHHHHHHHccCCC------HHHHHHHHhhCCccC-CHH--HHHH
Confidence 55566777888877776552 2 33333558888888887654443 112333333333322 222 2233
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q psy8160 209 RCFAAVGKVHDAFLAYRNS 227 (324)
Q Consensus 209 ~~~~~~~~~~~A~~~~~~a 227 (324)
+++...|++++|+...+..
T Consensus 81 WIyiGRg~~~eAlDiA~~L 99 (161)
T 2ynq_A 81 WIYIGRSQSEEALELARTI 99 (161)
T ss_dssp HHHHHHTCHHHHHHHHHHH
T ss_pred HHHHcCCchHHHHHHHHhc
Confidence 5666678999988876554
No 281
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=57.82 E-value=18 Score=26.58 Aligned_cols=52 Identities=10% Similarity=0.155 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCC
Q psy8160 103 ALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPV 156 (324)
Q Consensus 103 A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 156 (324)
+...|..+....-... .+..+..-|..+...|++.+|.+.|+..+.....|.
T Consensus 79 p~~if~~L~~~~IG~~--~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVS--LAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTT--BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchh--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 4555555554433322 234566678888889999999999999998774453
No 282
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=56.58 E-value=11 Score=23.77 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=22.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy8160 204 LYLLGRCFAAVGKVHDAFLAYRNSVE 229 (324)
Q Consensus 204 ~~~lg~~~~~~~~~~~A~~~~~~al~ 229 (324)
...+|+-|...|+|+.|+.+|+.+++
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 35678889999999999999999875
No 283
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=56.38 E-value=52 Score=23.51 Aligned_cols=58 Identities=10% Similarity=-0.028 Sum_probs=45.9
Q ss_pred HHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC
Q psy8160 91 GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 91 a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 152 (324)
-.....+|+-++-.+.+...+...+..+ +.+..+|..|...|+..+|.+.+.+|.+..
T Consensus 98 Ld~lv~~~KkDqLdki~~~~l~n~~~~~----~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 98 LDILVIQGKRDKLEEIGREILKNNEVSA----SILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC--CCSCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHhHHHHHHHHHhccCCCCh----HHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3456677888888887777665555544 899999999999999999999999998765
No 284
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=52.99 E-value=60 Score=23.21 Aligned_cols=50 Identities=14% Similarity=0.137 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccC
Q psy8160 182 RETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKS 231 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 231 (324)
+-++-.+.+...+...+-+|+.++.+|.+|...|+..+|.+...+|-+..
T Consensus 106 KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 106 KRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp CHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 45555556666566677789999999999999999999999999986644
No 285
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=51.51 E-value=29 Score=22.52 Aligned_cols=27 Identities=19% Similarity=0.160 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSV 228 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al 228 (324)
..+-..+..+...|+|++||++.++|.
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 445567778888899999888877775
No 286
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=49.92 E-value=32 Score=22.33 Aligned_cols=27 Identities=15% Similarity=0.012 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHH
Q psy8160 123 EVRFHIAHLHEVQRKYKTAKDSYEQLL 149 (324)
Q Consensus 123 ~~~~~la~~~~~~~~~~~A~~~~~~al 149 (324)
..+...+.-+...|+|++||++.+++.
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 344555666667777777777666654
No 287
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=49.20 E-value=75 Score=23.22 Aligned_cols=48 Identities=10% Similarity=0.070 Sum_probs=38.2
Q ss_pred HHHHHHHHHHh---cCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcC
Q psy8160 68 DSALKHLTLCL---IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDAS 115 (324)
Q Consensus 68 ~~A~~~~~~al---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~ 115 (324)
+.+...|.... +....+.++...|.++...|++.+|.+.|+..+....
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 33556666655 5567777788889999999999999999999998653
No 288
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=47.97 E-value=82 Score=24.37 Aligned_cols=69 Identities=10% Similarity=0.008 Sum_probs=43.2
Q ss_pred CCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcCCCCC
Q psy8160 80 DASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPV 156 (324)
Q Consensus 80 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 156 (324)
||.....|...+.. .+.+...|.-+....-... .+..|..-|..+...|++.+|...|+..+.....|-
T Consensus 116 D~RyLklWl~Ya~~------~~~p~~if~~L~~~~IG~~--~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 184 (223)
T 4aez_C 116 DVRYLRIWMQYVNY------IDEPVELFSFLAHHHIGQE--SSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPF 184 (223)
T ss_dssp CHHHHHHHHHHHTT------CSCHHHHHHHHHHTTCSTT--BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSH
T ss_pred CHHHHHHHHHHHHc------cCCHHHHHHHHHHCCcchh--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 44444444444442 1355566666655433333 234566678888888999999999999998875453
No 289
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=46.76 E-value=23 Score=23.18 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=23.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q psy8160 205 YLLGRCFAAVGKVHDAFLAYRNSVEKSEG 233 (324)
Q Consensus 205 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 233 (324)
..+|..+...|+++.|+.+|-+|+...|.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 45788888888899999988888887775
No 290
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.97 E-value=19 Score=24.55 Aligned_cols=44 Identities=14% Similarity=0.048 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCC
Q psy8160 182 RETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEG 233 (324)
Q Consensus 182 ~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 233 (324)
.+++|..+..++|+.+.. |.-...+.-|.+.+..+++++.+..+
T Consensus 18 ~h~~AF~~Is~AL~~DE~--------g~k~~Al~lYk~GI~eLe~Gl~I~~~ 61 (116)
T 2dl1_A 18 AYKKAFLFVNKGLNTDEL--------GQKEEAKNYYKQGIGHLLRGISISSK 61 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHHHHHHHhcccccc
Confidence 578899999999988752 22222333345556666666666654
No 291
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=44.13 E-value=33 Score=31.61 Aligned_cols=46 Identities=9% Similarity=0.011 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcc
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNN 98 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~ 98 (324)
.....|...+..|+|..|.+....++ .+|++..+..+++..|.+.|
T Consensus 451 ~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 451 RLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 35566777888999999999999999 99999999999888887765
No 292
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=39.91 E-value=87 Score=21.33 Aligned_cols=12 Identities=25% Similarity=0.493 Sum_probs=8.1
Q ss_pred hccHHHHHHHHH
Q psy8160 64 NNEYDSALKHLT 75 (324)
Q Consensus 64 ~~~~~~A~~~~~ 75 (324)
.|+|++|+.+|.
T Consensus 31 ag~y~eAl~lY~ 42 (117)
T 2cpt_A 31 AGNYEEALQLYQ 42 (117)
T ss_dssp HTCHHHHHHHHH
T ss_pred ccCHHHHHHHHH
Confidence 466777777666
No 293
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=39.35 E-value=51 Score=30.33 Aligned_cols=49 Identities=12% Similarity=-0.112 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCC
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNS 250 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~ 250 (324)
+.....|...+..|+|.-|.+....++..+|++.++...++.+|.++|.
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~ 498 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY 498 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 4456678888999999999999999999999999999999999998875
No 294
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=38.41 E-value=1.1e+02 Score=22.19 Aligned_cols=57 Identities=11% Similarity=-0.046 Sum_probs=36.4
Q ss_pred HhcccHHHHHHHHHHHHHhcCCC--c--ccHHHHH-HHHHHHHHHhhcHHHHHHHHHHHHhc
Q psy8160 95 KVNNEYDSALKHLTLCLIDASPC--T--FTKLEVR-FHIAHLHEVQRKYKTAKDSYEQLLKE 151 (324)
Q Consensus 95 ~~~~~~~~A~~~~~~~l~~~~~~--~--~~~~~~~-~~la~~~~~~~~~~~A~~~~~~al~~ 151 (324)
...|+|=+|-+.++.+....+.. . ..+.-+. ...|..+...|+...|...+.+++..
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 33466666666666665554333 1 1222344 45567778889999999999999863
No 295
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=38.10 E-value=51 Score=28.75 Aligned_cols=62 Identities=8% Similarity=0.030 Sum_probs=45.0
Q ss_pred HHHHHHHHhccHHHHHHHHHHHh-cCC--CC--------chhhHHHHHHHHhcccHHHHHHHHHHHHHh-cCCC
Q psy8160 56 RLGLMFKVNNEYDSALKHLTLCL-IDA--SP--------CTFTKLEGLMFKVNNEYDSALKHLTLCLID-ASPC 117 (324)
Q Consensus 56 ~lg~~~~~~~~~~~A~~~~~~al-~~~--~~--------~~~~~~la~~~~~~~~~~~A~~~~~~~l~~-~~~~ 117 (324)
.+-.+|++.++...+...++..- ..+ .. +...+.+|.++..+++|.+|.+++..|+.. .|..
T Consensus 181 ~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 181 KLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 34467889999998888886543 221 11 234455899999999999999999999887 6654
No 296
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=36.47 E-value=76 Score=27.65 Aligned_cols=33 Identities=27% Similarity=0.526 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHcc-CCCC
Q psy8160 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEK-SEGN 234 (324)
Q Consensus 202 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~ 234 (324)
...|.+|.++...++|.+|...+..|+.. .|..
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred eeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 66889999999999999999999999998 7754
No 297
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=35.99 E-value=84 Score=19.99 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=10.4
Q ss_pred HHHHHHhccHHHHHHHHH
Q psy8160 58 GLMFKVNNEYDSALKHLT 75 (324)
Q Consensus 58 g~~~~~~~~~~~A~~~~~ 75 (324)
|.-.-..|+|++|+.+|.
T Consensus 23 Ave~D~~g~y~eAl~lY~ 40 (86)
T 4a5x_A 23 AVELDSESRYPQALVCYQ 40 (86)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 333344566666666666
No 298
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=33.49 E-value=88 Score=27.12 Aligned_cols=29 Identities=17% Similarity=0.099 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy8160 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVE 229 (324)
Q Consensus 201 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 229 (324)
.-++..+|++|+.+|++++|+...++++.
T Consensus 190 ~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 190 YAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 36788899999999999999999999875
No 299
>4gq4_A Menin; tumor suppressor, nucleus, transcription-transcription inhib complex; HET: 0RT EPE PE4; 1.27A {Homo sapiens} PDB: 4gq3_A* 4gpq_A* 4gq6_A*
Probab=32.72 E-value=2.4e+02 Score=24.28 Aligned_cols=79 Identities=18% Similarity=0.302 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-----cCCCCH
Q psy8160 161 DICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVE-----KSEGNA 235 (324)
Q Consensus 161 ~~~~~l~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-----~~p~~~ 235 (324)
.....+-|+.+....+. +|.-|+..+-..-++.|.... ..++..|++|+. ....+.
T Consensus 243 ~lQq~LLWlLyd~Ghl~----~YPmALgnLgDLEei~pt~gr---------------p~~~~Lf~~AI~~ar~~Y~~~hv 303 (489)
T 4gq4_A 243 QLQQKLLWLLYDLGHLE----RYPMALGNLADLEELEPTPGR---------------PDPLTLYHKGIASAKTYYRDEHI 303 (489)
T ss_dssp HHHHHHHHHHHHHTTTT----TCHHHHHHHHHHHHHSCCTTS---------------CCHHHHHHHHHHHHHHHSTTCCS
T ss_pred HHHHHHHHHHHhccchh----hcchhhhcccCHhhcCCCCCC---------------CCHHHHHHHHHHHHHHhcccCcc
Confidence 34455555555544433 566666655555555554321 134455555554 234456
Q ss_pred HHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 236 DTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 236 ~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
-.+..+|-.+++.++ +.+|+.++
T Consensus 304 YPYtYlgG~~~R~~~-~~eAl~~w 326 (489)
T 4gq4_A 304 YPYMYLAGYHCRNRN-VREALQAW 326 (489)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred cceeecchHHHHhhh-HHHHHHHh
Confidence 678889999999999 99998875
No 300
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=31.25 E-value=1.2e+02 Score=23.73 Aligned_cols=46 Identities=11% Similarity=0.150 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcc-----CCCcccchHHHHHHHHHHH-HhccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYV-----DPSYLRANEVHLRLGLMFK-VNNEYDSALKHLTL 76 (324)
Q Consensus 31 ~~A~~~~~~~l~~-----~p~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~ 76 (324)
+.|.++|+.++++ .|.+|.....-.+.+..|+ -.++.++|...-++
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~ 198 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKA 198 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5677777777753 3443322111222222222 25666666655543
No 301
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=30.70 E-value=1.9e+02 Score=22.50 Aligned_cols=57 Identities=9% Similarity=0.124 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-cCCC-CchhhHHHHHHHHhc-ccHHHHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-IDAS-PCTFTKLEGLMFKVN-NEYDSALKHLTL 109 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~-~~~~~~~la~~~~~~-~~~~~A~~~~~~ 109 (324)
-+..++.+..+.++|++...++++++ .++. ...-..++...|... |....+.+....
T Consensus 7 ~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayKnvig~rR~swRiiss 66 (234)
T 2br9_A 7 DLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISS 66 (234)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45677888888999999999999998 6543 233344455555433 555555554443
No 302
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=30.65 E-value=62 Score=24.51 Aligned_cols=34 Identities=12% Similarity=0.030 Sum_probs=21.2
Q ss_pred HHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHH
Q psy8160 59 LMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGL 92 (324)
Q Consensus 59 ~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~ 92 (324)
.++...|.|++|.+.|++.. .++++......|..
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~ 159 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLM 159 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 45677888888888888877 66666666555443
No 303
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=30.18 E-value=1.3e+02 Score=23.95 Aligned_cols=46 Identities=20% Similarity=0.203 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhccCCCcccchHHHHHHHHH----HH-HhccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLM----FK-VNNEYDSALKHLTL 76 (324)
Q Consensus 31 ~~A~~~~~~~l~~~p~~~~~~~~~~~lg~~----~~-~~~~~~~A~~~~~~ 76 (324)
+.|.++|+.++++..+.+....++.+|+.- |+ -.++.++|...-++
T Consensus 173 e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~ 223 (260)
T 2npm_A 173 EDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKE 223 (260)
T ss_dssp HHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 677888888876431112222234444332 22 35666666665553
No 304
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=30.04 E-value=99 Score=26.85 Aligned_cols=29 Identities=21% Similarity=0.361 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy8160 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVE 229 (324)
Q Consensus 201 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 229 (324)
.-++-.+|++|+.+|+|++|+...++++.
T Consensus 196 ~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 196 WAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 46788899999999999999999998875
No 305
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=29.82 E-value=29 Score=19.80 Aligned_cols=18 Identities=11% Similarity=0.032 Sum_probs=15.0
Q ss_pred hHHHHHHHhhhcCCChhh
Q psy8160 279 NNRQCYNSYSTSIASCKH 296 (324)
Q Consensus 279 ~A~~~~~~al~~~p~~~~ 296 (324)
.|+++...|.+.+|++..
T Consensus 32 VAiqCi~~aF~v~~~d~~ 49 (52)
T 4gof_A 32 VAIQCLETAFGVTVEDSD 49 (52)
T ss_dssp HHHHHHHHHHTCCSSCCT
T ss_pred HHHHHHHHHcCCCccccc
Confidence 399999999999998754
No 306
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=29.66 E-value=1.1e+02 Score=26.58 Aligned_cols=47 Identities=13% Similarity=0.195 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhhCCc--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy8160 183 ETLAIHCLQKSIEADPK--------SGQSLYLLGRCFAAVGKVHDAFLAYRNSVE 229 (324)
Q Consensus 183 ~~~A~~~~~~al~~~~~--------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 229 (324)
++.-+..++.|+..-|. ..-++-.+|++|+..|+|++|+...++++.
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 230 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIK 230 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34445555555544332 236788899999999999999999999985
No 307
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=29.61 E-value=2.1e+02 Score=22.68 Aligned_cols=58 Identities=7% Similarity=0.099 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHh-cC--CC-CchhhHHHHHHHHhc-ccHHHHHHHHHH
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHLTLCL-ID--AS-PCTFTKLEGLMFKVN-NEYDSALKHLTL 109 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~~~al-~~--~~-~~~~~~~la~~~~~~-~~~~~A~~~~~~ 109 (324)
+-+..++.+..+.++|++...++++++ .+ +. ...-..++...|... |....+.+....
T Consensus 9 e~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRiiss 71 (260)
T 1o9d_A 9 EENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISS 71 (260)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 346678888889999999999999998 66 32 233344455555433 555566655544
No 308
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=29.55 E-value=1.1e+02 Score=19.27 Aligned_cols=13 Identities=8% Similarity=0.158 Sum_probs=8.3
Q ss_pred HhccHHHHHHHHH
Q psy8160 63 VNNEYDSALKHLT 75 (324)
Q Consensus 63 ~~~~~~~A~~~~~ 75 (324)
..|+|++|+.+|.
T Consensus 23 ~~g~y~eAl~lY~ 35 (83)
T 2v6y_A 23 KEGKVEDAITYYK 35 (83)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HhccHHHHHHHHH
Confidence 3466666666666
No 309
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=29.48 E-value=1.6e+02 Score=21.32 Aligned_cols=85 Identities=7% Similarity=0.062 Sum_probs=46.3
Q ss_pred HHHHHHhccHHHHHHHHHHHhcCCCCchhhHHHHHHHHhcccHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHhhc
Q psy8160 58 GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRK 137 (324)
Q Consensus 58 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~~~~ 137 (324)
+...+-..+|..-+..++..-...-+....+.+|..|....+...-.+ +.++....... +-.+.+=+++...|+
T Consensus 15 a~~afl~~dYs~VI~~L~~~~~~~Lp~~~kY~LA~SYI~~e~Ls~eQK--enIln~itlkS----de~yL~YWIyiGRg~ 88 (161)
T 2ynq_A 15 STELFLQNKYSDVITTLEDYAPEDMPYVIQYELASSYVMTESLTEEQR--QTVSNNITLKT----DEQYMLYWIYIGRSQ 88 (161)
T ss_dssp HHHHHTTTCHHHHHHHHTTSCGGGSCHHHHHHHHHHHHHTSSSCHHHH--HHHHHTCCTTS----CHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhHHHHHHHHhcCChhhCChhHHHHHHHHHHHccCCCHHHH--HHHHhhCCccC----CHHHHHHHHHHcCCc
Confidence 444555677777776666433223333455667777776655432221 11222211111 233445577788899
Q ss_pred HHHHHHHHHHH
Q psy8160 138 YKTAKDSYEQL 148 (324)
Q Consensus 138 ~~~A~~~~~~a 148 (324)
+++|++.-+.+
T Consensus 89 ~~eAlDiA~~L 99 (161)
T 2ynq_A 89 SEEALELARTI 99 (161)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHhc
Confidence 99998887664
No 310
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=29.27 E-value=2.1e+02 Score=22.64 Aligned_cols=58 Identities=12% Similarity=0.143 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHh-cC---C-CCchhhHHHHHHHHhc-ccHHHHHHHHHH
Q psy8160 52 EVHLRLGLMFKVNNEYDSALKHLTLCL-ID---A-SPCTFTKLEGLMFKVN-NEYDSALKHLTL 109 (324)
Q Consensus 52 ~~~~~lg~~~~~~~~~~~A~~~~~~al-~~---~-~~~~~~~~la~~~~~~-~~~~~A~~~~~~ 109 (324)
+-+..++.+..+.++|++..+++++++ .+ + -...-..++...|... |....+......
T Consensus 29 e~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAyKNvIg~rR~swRiiss 92 (260)
T 2npm_A 29 ESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYKNAVGSRRSSWRIISS 92 (260)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 345678888889999999999999998 65 3 2233344455555543 555566555543
No 311
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=29.20 E-value=1.8e+02 Score=25.15 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=28.5
Q ss_pred cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc
Q psy8160 120 TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151 (324)
Q Consensus 120 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 151 (324)
.+.-+...+|.++...+++++|++..++++..
T Consensus 188 tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 219 (454)
T 3myv_A 188 NKYAARALLARIYLYHDDNRKAFDLADQLIKD 219 (454)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHhC
Confidence 66678888999999999999999999999864
No 312
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=29.17 E-value=57 Score=16.70 Aligned_cols=18 Identities=33% Similarity=0.602 Sum_probs=12.8
Q ss_pred hcHHHHHHHHHHHHhcCC
Q psy8160 136 RKYKTAKDSYEQLLKEDD 153 (324)
Q Consensus 136 ~~~~~A~~~~~~al~~~~ 153 (324)
+-|++|+..|+.++...+
T Consensus 16 KayDKAVaSfk~alk~~~ 33 (37)
T 3s6n_M 16 KAYDKAVASFKHALKNGD 33 (37)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 347788888888776653
No 313
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=28.50 E-value=1.1e+02 Score=19.22 Aligned_cols=13 Identities=8% Similarity=0.202 Sum_probs=8.6
Q ss_pred HhccHHHHHHHHH
Q psy8160 63 VNNEYDSALKHLT 75 (324)
Q Consensus 63 ~~~~~~~A~~~~~ 75 (324)
..|+|++|+.+|.
T Consensus 31 ~~g~y~eAl~lY~ 43 (83)
T 2w2u_A 31 KEGNAEEAITNYK 43 (83)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HhccHHHHHHHHH
Confidence 3467777777666
No 314
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=28.45 E-value=2.5e+02 Score=23.22 Aligned_cols=41 Identities=10% Similarity=0.084 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 218 HDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 218 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
..|+.|-.+.=...-.+|+.+..+|..|.+.++ +.+|..+|
T Consensus 119 ~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~-~~~Ae~H~ 159 (336)
T 3lpz_A 119 KEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGE-FEAAEKHL 159 (336)
T ss_dssp HHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCC-HHHHHHHH
Confidence 566776665333455789999999999999999 99998887
No 315
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.69 E-value=2.8e+02 Score=23.43 Aligned_cols=91 Identities=11% Similarity=0.016 Sum_probs=57.3
Q ss_pred HHHHhccHHHHHHHHHHHh-c----C---C------C--C--chhhHHHHHHHHhcccHHHHHHHHHHHHH---hcCCCc
Q psy8160 60 MFKVNNEYDSALKHLTLCL-I----D---A------S--P--CTFTKLEGLMFKVNNEYDSALKHLTLCLI---DASPCT 118 (324)
Q Consensus 60 ~~~~~~~~~~A~~~~~~al-~----~---~------~--~--~~~~~~la~~~~~~~~~~~A~~~~~~~l~---~~~~~~ 118 (324)
+.....+.++|++.+..+. . + + . . .......+..+...|+.++|....+++-. ..+...
T Consensus 85 ~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~ 164 (393)
T 4b4t_O 85 SLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIP 164 (393)
T ss_dssp HHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCcc
Confidence 4556778999999998764 1 0 0 0 1 12233368888899999999998888843 222211
Q ss_pred -ccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHh
Q psy8160 119 -FTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLK 150 (324)
Q Consensus 119 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 150 (324)
......+...+..+...+++..+....-..+.
T Consensus 165 ~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 165 LRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 12334455567777788888877666555554
No 316
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=27.68 E-value=2e+02 Score=24.88 Aligned_cols=33 Identities=12% Similarity=0.126 Sum_probs=28.9
Q ss_pred ccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhc
Q psy8160 119 FTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151 (324)
Q Consensus 119 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 151 (324)
..+.-++..+|.++...|++++|++..++++..
T Consensus 193 ~tk~aa~allArvyL~~~~~~~A~~~a~~vi~~ 225 (461)
T 3kez_A 193 VNRWAAMTLLSRVYLYKGEYNEALTMAENAIKG 225 (461)
T ss_dssp CCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 366778889999999999999999999999864
No 317
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=27.18 E-value=2e+02 Score=25.24 Aligned_cols=33 Identities=21% Similarity=0.193 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC
Q psy8160 120 TKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 120 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 152 (324)
.+.-++..+|.+|...+++++|+...++++...
T Consensus 201 tk~aA~allArvyL~~~~~~~A~~~a~~vi~~~ 233 (495)
T 3lew_A 201 DNEVVLGILSRACLYARQWEKAKTYSDKLLAKD 233 (495)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 566788889999999999999999999998754
No 318
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=26.53 E-value=1.3e+02 Score=26.40 Aligned_cols=29 Identities=14% Similarity=-0.024 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy8160 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVE 229 (324)
Q Consensus 201 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 229 (324)
.-++-.+|++|+.++++++|+...++++.
T Consensus 203 ~aA~allArvyL~~~~~~~A~~~a~~vi~ 231 (495)
T 3lew_A 203 EVVLGILSRACLYARQWEKAKTYSDKLLA 231 (495)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 46788899999999999999999999975
No 319
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=26.14 E-value=2.4e+02 Score=22.18 Aligned_cols=12 Identities=8% Similarity=0.025 Sum_probs=6.3
Q ss_pred HHHHHHHHHHhc
Q psy8160 31 IKAIKTFQQLLY 42 (324)
Q Consensus 31 ~~A~~~~~~~l~ 42 (324)
+.|.++|+.+++
T Consensus 148 ~~a~~aY~~A~~ 159 (248)
T 3uzd_A 148 ESSEKAYSEAHE 159 (248)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445555555543
No 320
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=25.91 E-value=2.1e+02 Score=24.86 Aligned_cols=52 Identities=10% Similarity=0.145 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhcCCC----cccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHhcC
Q psy8160 101 DSALKHLTLCLIDASPC----TFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKED 152 (324)
Q Consensus 101 ~~A~~~~~~~l~~~~~~----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 152 (324)
+..++.++.++..-|.. ...+.-++-.+|.+|...+++++|++..++++...
T Consensus 177 ~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~~ 232 (477)
T 3mcx_A 177 EQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKNN 232 (477)
T ss_dssp HHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCC
Confidence 44444555555443332 23666788899999999999999999999999753
No 321
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=25.77 E-value=1.4e+02 Score=19.33 Aligned_cols=55 Identities=7% Similarity=-0.049 Sum_probs=33.5
Q ss_pred HHhcccHHHHHHHHHHHHHhcCCCc--ccHHHHHHHHHHHHHHhhcHHHHHHHHHHHHh
Q psy8160 94 FKVNNEYDSALKHLTLCLIDASPCT--FTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLK 150 (324)
Q Consensus 94 ~~~~~~~~~A~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 150 (324)
+...|+|=+|-+.++.+....+... ..+.-+....|..+...|+. |...+.+++.
T Consensus 11 lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 11 LWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 3345677777777777766553321 12223344446666677887 8889998876
No 322
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=25.07 E-value=1.7e+02 Score=23.23 Aligned_cols=46 Identities=11% Similarity=0.144 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcc-----CCCcccchHHHHHHHHHHH-HhccHHHHHHHHHH
Q psy8160 31 IKAIKTFQQLLYV-----DPSYLRANEVHLRLGLMFK-VNNEYDSALKHLTL 76 (324)
Q Consensus 31 ~~A~~~~~~~l~~-----~p~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~ 76 (324)
+.|.++|+.++.+ .|.+|.....-.+....|+ -.++.++|...-++
T Consensus 152 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~ 203 (260)
T 1o9d_A 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQ 203 (260)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 5677788877753 4443322112222222222 35667766666554
No 323
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=22.98 E-value=80 Score=27.50 Aligned_cols=50 Identities=18% Similarity=0.179 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHhhhC------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Q psy8160 180 SHRETLAIHCLQKSIEAD------PKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVE 229 (324)
Q Consensus 180 ~~~~~~A~~~~~~al~~~------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 229 (324)
..+.++|+..+......+ +...-++-.+|++|+.++++++|....++++.
T Consensus 164 ~~DL~~A~~~L~~~~~~~~~~~gr~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~ 219 (460)
T 3snx_A 164 FDDLNLAQDYLTNYVRKGDGQKFKPNTDVVNGLMARAYLLTGQWGEAAKAAEAARK 219 (460)
T ss_dssp HHHHHHHHHHTTTCCCCSGGGTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccCCccccCcccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
No 324
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=21.73 E-value=1.6 Score=38.48 Aligned_cols=74 Identities=14% Similarity=0.077 Sum_probs=49.2
Q ss_pred CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH----------HHHHhhHH
Q psy8160 198 PKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL----------NKYRDLGD 267 (324)
Q Consensus 198 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~----------~~~~~lg~ 267 (324)
-+.+..|..+|..+...++..+|++.|-+| .+|. .+...-.+..+.|. |++=++++ .+=..|..
T Consensus 51 ~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps---~y~eVi~~A~~~~~-~edLv~yL~MaRk~~ke~~IDteLi~ 124 (624)
T 3lvg_A 51 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPS---SYMEVVQAANTSGN-WEELVKYLQMARKKARESYVETELIF 124 (624)
T ss_dssp CCCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCC---SSSHHHHHTTTSSC-CTTHHHHHHTTSTTCCSTTTTHHHHH
T ss_pred hCCccHHHHHHHHHHccCchHHHHHHHHhC--CChH---HHHHHHHHHHhCCC-HHHHHHHHHHHHHHhcccccHHHHHH
Confidence 356789999999999999999999998555 3443 33444445556777 77777777 22234455
Q ss_pred HHHHcCCCCc
Q psy8160 268 FLVINNIPTS 277 (324)
Q Consensus 268 ~~~~~~~~~~ 277 (324)
+|.+.++..+
T Consensus 125 ayAk~~rL~e 134 (624)
T 3lvg_A 125 ALAKTNRLAE 134 (624)
T ss_dssp HHHTSCSSST
T ss_pred HHHhhCcHHH
Confidence 5555554444
No 325
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=21.29 E-value=3.6e+02 Score=22.49 Aligned_cols=26 Identities=12% Similarity=0.216 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhc---------cHHHHHHHHHHHh
Q psy8160 53 VHLRLGLMFKVNN---------EYDSALKHLTLCL 78 (324)
Q Consensus 53 ~~~~lg~~~~~~~---------~~~~A~~~~~~al 78 (324)
+++++|.+|...+ ..+.|..+|++|-
T Consensus 119 VLfNiaal~s~~a~~~~r~~~~glK~A~~~fq~AA 153 (363)
T 3rau_A 119 ILYNLGALHSMLGAMDKRVSEEGMKVSCTHFQCAA 153 (363)
T ss_dssp HHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 5777777775543 3566777777664
No 326
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=20.64 E-value=79 Score=23.93 Aligned_cols=51 Identities=6% Similarity=-0.021 Sum_probs=34.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHccCCCCHHHHHHhHHHHhhcCCCHHHHHHHH
Q psy8160 208 GRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQAL 259 (324)
Q Consensus 208 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~A~~~~ 259 (324)
-.++++.|.+++|.+.+++....++++......|..+-.+.+. +..-++.|
T Consensus 124 V~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~-~H~~lqnF 174 (211)
T 3bqo_A 124 IAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDT-FHSFFQHF 174 (211)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCT-TCHHHHHS
T ss_pred HHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCC-CcHHHHHc
Confidence 3568899999999999999988888777777777777666666 55555544
No 327
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=20.49 E-value=3.1e+02 Score=21.50 Aligned_cols=58 Identities=9% Similarity=0.092 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-cCCC-CchhhHHHHHHHHhc-ccHHHHHHHHHHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-IDAS-PCTFTKLEGLMFKVN-NEYDSALKHLTLC 110 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~-~~~~~~~la~~~~~~-~~~~~A~~~~~~~ 110 (324)
-+..++.+.-+.++|++...+.++++ .++. ...-..++...|... |....+.+.+...
T Consensus 6 ~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissi 66 (248)
T 3uzd_A 6 QLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSI 66 (248)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 35677888899999999999999988 6543 233344555555433 5566666655443
No 328
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=24.47 E-value=24 Score=32.62 Aligned_cols=49 Identities=10% Similarity=-0.063 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHh-cCCCCchhhHHHHHHHHhcccHH
Q psy8160 53 VHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYD 101 (324)
Q Consensus 53 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~~~~~~~~~la~~~~~~~~~~ 101 (324)
.....|.-.+..|+|..|.+....++ .+|++..+..+++..|.+.|.-.
T Consensus 463 ~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~ 512 (668)
T 2yhe_A 463 AVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQT 512 (668)
Confidence 34556677788899999999999999 99999999999999888877443
Done!