RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8160
(324 letters)
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 64.2 bits (157), Expect = 7e-12
Identities = 29/202 (14%), Positives = 65/202 (32%), Gaps = 26/202 (12%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLT--LCLIDASPCTFTKL 89
+A+ + + L +GL + + N A + + L + P ++
Sbjct: 143 QAMAAYFTAAQLMKGCHLP---MLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEV 199
Query: 90 EGLMFKVNNEYDSALKHLTLCL-----IDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDS 144
G++ N E+ +A K L I + ++ H+ +KY A D
Sbjct: 200 -GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258
Query: 145 YEQLL--KEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQ 202
+ Q L + + +G+++ A+ ++
Sbjct: 259 HRQALVLIPQNASTYS------AIGYIHS-------LMGNFENAVDYFHTALGLRRDDTF 305
Query: 203 SLYLLGRCFAAVGKVHDAFLAY 224
S+ +LG C +A++
Sbjct: 306 SVTMLGHCIEMYIGDSEAYIGA 327
Score = 58.5 bits (142), Expect = 6e-10
Identities = 32/225 (14%), Positives = 79/225 (35%), Gaps = 34/225 (15%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKH----LTLCLIDASPCTFT 87
A + + ++ +Y A + G F V +E+D A+ L P +
Sbjct: 109 HARRYLSKATTLEKTYGPA---WIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYI 165
Query: 88 KLEGLMFKVNNEYDSALKH----LTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKD 143
GL + + N A + L++ D V + + ++KTA+
Sbjct: 166 ---GLEYGLTNNSKLAERFFSQALSIAPEDP--------FVMHEVGVVAFQNGEWKTAEK 214
Query: 144 SYEQLLK-----EDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP 198
+ L+ +++ V + LG + + E A+ ++++ P
Sbjct: 215 WFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE-------ALDYHRQALVLIP 267
Query: 199 KSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
++ + +G + +G +A + ++ + + +G+
Sbjct: 268 QNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH 312
Score = 51.9 bits (125), Expect = 9e-08
Identities = 40/243 (16%), Positives = 68/243 (27%), Gaps = 31/243 (12%)
Query: 91 GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLK 150
N ++ K LT +++ P + L V HI L E K +L+
Sbjct: 29 AERHYYNCDFKMCYK-LTSVVMEKDPFHASCLPV--HIGTLVE-LNKANELFYLSHKLVD 84
Query: 151 EDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRC 210
P + +G Y + E A L K+ + G + G
Sbjct: 85 LY--PSN--PVSWFAVGCYYLMVGHKNEH------ARRYLSKATTLEKTYGPAWIAYGHS 134
Query: 211 FAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYR-----DL 265
FA + A AY + + +G IG + A +
Sbjct: 135 FAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGL----EYGLTNNSKLAERFFSQALSIAP 190
Query: 266 GDFLVINNIPTSNNNRQCYNSYSTSIASCKH-INNNKDFSNNSNREDYHQALNK----YR 320
D V++ + + T+ + K N + + LN R
Sbjct: 191 EDPFVMHEVGVVAFQN---GEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR 247
Query: 321 DLG 323
L
Sbjct: 248 KLK 250
Score = 51.5 bits (124), Expect = 1e-07
Identities = 25/143 (17%), Positives = 52/143 (36%), Gaps = 16/143 (11%)
Query: 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSH 181
L+V +A H +K ++++D P H + I TL E +
Sbjct: 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASC--------LPVHIGTLVEL-N 70
Query: 182 RETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHD-AFLAYRNSVEKSEGNADTWCS 240
+ + K ++ P + S + +G + VG ++ A + + W +
Sbjct: 71 KANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIA 130
Query: 241 IGNKDFSNNSNREDYHQALNKYR 263
G+ F+ ++ QA+ Y
Sbjct: 131 YGH-SFAVE---SEHDQAMAAYF 149
Score = 41.5 bits (98), Expect = 2e-04
Identities = 34/248 (13%), Positives = 76/248 (30%), Gaps = 46/248 (18%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALK--HLTLCLIDASPCTFTKL 89
K ++ DP + N+ + H + L ++P ++ +
Sbjct: 40 MCYKLTSVVMEKDPFHA---SCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAV 96
Query: 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIA-----HLHEVQRKYKTAKDS 144
V ++ + A ++L+ T LE + A H V+ ++ A +
Sbjct: 97 GCYYLMVGHKNEHARRYLSKA---------TTLEKTYGPAWIAYGHSFAVESEHDQAMAA 147
Query: 145 YEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSL 204
Y + + +G Y ++ LA +++ P+ +
Sbjct: 148 YFTAAQLM--KGCHLPMLY--IGLEYG-------LTNNSKLAERFFSQALSIAPEDPFVM 196
Query: 205 YLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNK--- 261
+ +G G+ A + +++EK K N + + LN
Sbjct: 197 HEVGVVAFQNGEWKTAEKWFLDALEK------------IKAIGNEVTVDKWEPLLNNLGH 244
Query: 262 -YRDLGDF 268
R L +
Sbjct: 245 VCRKLKKY 252
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 60.1 bits (146), Expect = 3e-10
Identities = 27/239 (11%), Positives = 59/239 (24%), Gaps = 23/239 (9%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLE 90
+ + + A G+ + N A L + + +P ++ L
Sbjct: 227 SLLSANTVDDPLRENAALA---LCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFL- 282
Query: 91 GLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLL 149
L K + ++ +H ++ + + YK AK+ +++
Sbjct: 283 ALTLADKENSQEFFKFFQKAVDLNP-----EYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337
Query: 150 KEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGR 209
+ P + QL + + E + ++ P +
Sbjct: 338 SLN--PEN--VYPYIQLACLLYKQGKFTE-------SEAFFNETKLKFPTLPEVPTFFAE 386
Query: 210 CFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDF 268
G A Y + E IG + D F
Sbjct: 387 ILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGP-LIGKATILARQSSQDPTQLDEEKF 444
Score = 49.7 bits (119), Expect = 6e-07
Identities = 33/235 (14%), Positives = 67/235 (28%), Gaps = 26/235 (11%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLE- 90
A L S + L+ K + Y S L T+ L
Sbjct: 191 TAYALLSDALQRLYSATDEGY-LVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCY 248
Query: 91 -GLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQL 148
G+ + N A L + + +P ++ L A + + +++
Sbjct: 249 TGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFL------ALTLADKENSQEFFKFFQKA 302
Query: 149 LKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208
+ + P + G MY + A QK+ +P++ L
Sbjct: 303 VDLN--PEY--PPTYYHRGQMYFILQDYKN-------AKEDFQKAQSLNPENVYPYIQLA 351
Query: 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYR 263
GK ++ + + K + ++R D+ A+ +Y
Sbjct: 352 CLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEI----LTDRGDFDTAIKQYD 402
Score = 48.6 bits (116), Expect = 2e-06
Identities = 27/235 (11%), Positives = 65/235 (27%), Gaps = 14/235 (5%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEG 91
K I+ + L + P + +A LR + + A+ L++ ++ F
Sbjct: 77 KVIEFTTKALEIKPDHSKA---LLRRASANESLGNFTDAMFDLSVLSLNGD---FDGASI 130
Query: 92 LMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151
N A+K L L L +A + + +
Sbjct: 131 EPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD 190
Query: 152 D---DLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208
L L+ D L + + + + +L G
Sbjct: 191 TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTG 250
Query: 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYR 263
+ DA + + S+ +++ + +++E+ + ++
Sbjct: 251 IFHFLKNNLLDAQVLLQESINL-HPTPNSYIFLALT----LADKENSQEFFKFFQ 300
Score = 48.2 bits (115), Expect = 2e-06
Identities = 38/250 (15%), Positives = 84/250 (33%), Gaps = 23/250 (9%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-ID-ASPCTFTKL 89
+ K FQ+ + ++P Y + G M+ + +Y +A + ++ + + +L
Sbjct: 294 EFFKFFQKAVDLNPEYP---PTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQL 350
Query: 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQ-- 147
+ ++ + P T EV A + + + TA Y+
Sbjct: 351 -ACLLYKQGKFTESEAFFNET-KLKFP---TLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405
Query: 148 LLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSH---RETLAIHCLQKSIEADPKSGQSL 204
L+E +H+ + + + AI L K+ E DP+S Q+
Sbjct: 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAK 465
Query: 205 YLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDF--------SNNSNREDYH 256
L + + K+ +A + +S + + + + ++
Sbjct: 466 IGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAKIQKRLRADPIISAKME 525
Query: 257 QALNKYRDLG 266
L +YR G
Sbjct: 526 LTLARYRAKG 535
Score = 45.9 bits (109), Expect = 1e-05
Identities = 18/185 (9%), Positives = 46/185 (24%), Gaps = 12/185 (6%)
Query: 137 KYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA 196
+ + QL A + G + + AI Q +IE
Sbjct: 2 SHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFF-------TAKNFNEAIKYYQYAIEL 54
Query: 197 DPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYH 256
DP + C+ + G + ++E ++ + N + ++
Sbjct: 55 DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS----ANESLGNFT 110
Query: 257 QALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINN-NKDFSNNSNREDYHQA 315
A+ L + + N + + + + + +
Sbjct: 111 DAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASF 170
Query: 316 LNKYR 320
+
Sbjct: 171 FGIFD 175
Score = 33.2 bits (76), Expect = 0.13
Identities = 29/208 (13%), Positives = 61/208 (29%), Gaps = 54/208 (25%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALK-----------------HL 74
++ F + P+ EV + ++D+A+K +
Sbjct: 362 ESEAFFNETKLKFPTLP---EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418
Query: 75 TLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKL-----EVRFHIA 129
+ A+ + ++++A+K LT +L + + +A
Sbjct: 419 GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC---------ELDPRSEQAKIGLA 469
Query: 130 HLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHC 189
L K A + +E + R + T E +
Sbjct: 470 QLKLQMEKIDEAIELFEDSAI-----------LARTMDEKLQAT-TFAEAAK-------- 509
Query: 190 LQKSIEADPKSGQSLYLLGRCFAAVGKV 217
+QK + ADP + L + A G +
Sbjct: 510 IQKRLRADPIISAKMELTLARYRAKGML 537
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 58.4 bits (142), Expect = 7e-10
Identities = 49/279 (17%), Positives = 94/279 (33%), Gaps = 34/279 (12%)
Query: 52 EVHLRLGLMFKVNNEYDSALKHLTLCLIDASP---CTFTKLEGLMFKVNNEYDSALKHLT 108
E HL LG + AL +D P + + +F + +AL LT
Sbjct: 4 EKHLELGKKLLAAGQLADALSQFHAA-VDGDPDNYIAYYRR-ATVFLAMGKSKAALPDLT 61
Query: 109 LCL-IDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLK---EDDLPVHLKADICR 164
+ + FT R HL Q K A+D ++++LK + ++ + +
Sbjct: 62 KVIALKMD---FTA--ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVK 116
Query: 165 ---QLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAF 221
+D + AI L K +E + L CF G+ A
Sbjct: 117 ADEMQRLRSQALDAFDGADYTA--AITFLDKILEVCVWDAELRELRAECFIKEGEPRKAI 174
Query: 222 LAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNR 281
+ + + N + + I + D+ +L++ R+ + +++
Sbjct: 175 SDLKAASKLKSDNTEAFYKISTLYYQLG----DHELSLSEVRE-----CLKLDQ---DHK 222
Query: 282 QCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYR 320
+C+ Y K I + ++ Y A +KY
Sbjct: 223 RCFAHYKQVKKLNKLIESAEEL---IRDGRYTDATSKYE 258
Score = 51.1 bits (123), Expect = 2e-07
Identities = 28/212 (13%), Positives = 62/212 (29%), Gaps = 35/212 (16%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEG 91
KAI + + A ++ ++ +++ +L + CL
Sbjct: 172 KAISDLKAASKLKSDNTEA---FYKISTLYYQLGDHELSLSEVRECL------------- 215
Query: 92 LMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151
K++ ++ H KL A +Y A YE ++K
Sbjct: 216 ---KLDQDHKRCFAHYKQVK---------KLNKLIESAEELIRDGRYTDATSKYESVMKT 263
Query: 152 DDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCF 211
+ ++ HC + E AI + ++ +P + +L +
Sbjct: 264 EPSVAEYTVRSKERIC---HCFSKDEK--PVE--AIRICSEVLQMEPDNVNALKDRAEAY 316
Query: 212 AAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
+A Y + E +E + +
Sbjct: 317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEK 348
Score = 50.3 bits (121), Expect = 3e-07
Identities = 26/237 (10%), Positives = 67/237 (28%), Gaps = 43/237 (18%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEG 91
A+ +++ + + A L+ G + + D A L
Sbjct: 55 AALPDLTKVIALKMDFTAA---RLQRGHLLLKQGKLDEAEDDFKKVL------------- 98
Query: 92 LMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151
K N + + + +++ A Y A +++L+
Sbjct: 99 ---KSNPSEQEEKEAESQLV------KADEMQRLRSQALDAFDGADYTAAITFLDKILEV 149
Query: 152 DDLPV---HLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208
L+A+ + G R+ AI L+ + + + ++ Y +
Sbjct: 150 CVWDAELRELRAECFIKEG------------EPRK--AISDLKAASKLKSDNTEAFYKIS 195
Query: 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN-KDFSNNSNREDYHQALNKYRD 264
+ +G + R ++ + + + K + + +Y D
Sbjct: 196 TLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTD 252
Score = 45.3 bits (108), Expect = 1e-05
Identities = 38/257 (14%), Positives = 75/257 (29%), Gaps = 40/257 (15%)
Query: 32 KAIKTFQQLLYVDPSYLRA------------NEVHLRLGLMFKVNNEYDSALKHLTLCL- 78
+A F+++L +PS + L +Y +A+ L L
Sbjct: 89 EAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE 148
Query: 79 IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH-----LHE 133
+ +L F E A+ L KL+ A L+
Sbjct: 149 VCVWDAELRELRAECFIKEGEPRKAISDLKAAS---------KLKSDNTEAFYKISTLYY 199
Query: 134 VQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGE---KSHRETLAIHCL 190
++ + + LK D H + + + + E + R T A
Sbjct: 200 QLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKY 257
Query: 191 QKSIEADPK----SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDF 246
+ ++ +P + +S + CF+ K +A ++ N +
Sbjct: 258 ESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAE--- 314
Query: 247 SNNSNREDYHQALNKYR 263
E Y +A+ Y
Sbjct: 315 -AYLIEEMYDEAIQDYE 330
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 58.5 bits (142), Expect = 9e-10
Identities = 50/281 (17%), Positives = 94/281 (33%), Gaps = 38/281 (13%)
Query: 52 EVHLRLGLMFKVNNEYDSALKHLTLCLIDASP---CTFTKLEGLMFKVNNEYDSALKHLT 108
E HL LG + AL +D P + + +F + +AL LT
Sbjct: 27 EKHLELGKKLLAAGQLADALSQFHAA-VDGDPDNYIAYYRR-ATVFLAMGKSKAALPDLT 84
Query: 109 LCL-IDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQ-- 165
+ + FT R HL Q K A+D ++++LK + P + +
Sbjct: 85 KVIQLKMD---FTA--ARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQL 137
Query: 166 ------LGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHD 219
++ G + AI L K +E + L CF G+
Sbjct: 138 IKSDEMQRLRSQALNAFGSGDYTA--AIAFLDKILEVCVWDAELRELRAECFIKEGEPRK 195
Query: 220 AFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNN 279
A + + + N + + I + D+ +L++ R+ + +
Sbjct: 196 AISDLKAASKLKNDNTEAFYKISTLYYQLG----DHELSLSEVRE-----CLKLDQ---D 243
Query: 280 NRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYR 320
+++C+ Y K I + ++ Y A +KY
Sbjct: 244 HKRCFAHYKQVKKLNKLIESAEEL---IRDGRYTDATSKYE 281
Score = 51.6 bits (124), Expect = 1e-07
Identities = 35/309 (11%), Positives = 85/309 (27%), Gaps = 58/309 (18%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEG 91
A+ +++ + + A L+ G + + D A L
Sbjct: 78 AALPDLTKVIQLKMDFTAA---RLQRGHLLLKQGKLDEAEDDFKKVL------------- 121
Query: 92 LMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151
K N + + + + +++ A Y A +++L+
Sbjct: 122 ---KSNPSENEEKEAQSQLI------KSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV 172
Query: 152 --DDLPVH-LKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208
D + L+A+ + G AI L+ + + + ++ Y +
Sbjct: 173 CVWDAELRELRAECFIKEG--------------EPRKAISDLKAASKLKNDNTEAFYKIS 218
Query: 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN--------KDFSNNSNREDYHQALN 260
+ +G + R ++ + + + + Y A +
Sbjct: 219 TLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATS 278
Query: 261 KYRDLGDFLVINNIPTSN--NNR-QCY---NSYSTSIASC-KHINNNKDFSNN-SNREDY 312
KY + T C+ +I C + + D N +R +
Sbjct: 279 KYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEA 338
Query: 313 HQALNKYRD 321
+ Y +
Sbjct: 339 YLIEEMYDE 347
Score = 47.4 bits (113), Expect = 3e-06
Identities = 23/221 (10%), Positives = 56/221 (25%), Gaps = 33/221 (14%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-ID---------- 80
KAI + + A ++ ++ +++ +L + CL +D
Sbjct: 195 KAISDLKAASKLKNDNTEA---FYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHY 251
Query: 81 --ASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKY 138
+ Y A + + + I H K
Sbjct: 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKP 311
Query: 139 KTAKDSYEQLLK--EDDLPVHL-KADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIE 195
A ++L+ D++ +A+ AI + + E
Sbjct: 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEE--------------MYDEAIQDYETAQE 357
Query: 196 ADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNAD 236
+ Q L + + + V+++ +
Sbjct: 358 HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQE 398
Score = 47.0 bits (112), Expect = 5e-06
Identities = 38/252 (15%), Positives = 76/252 (30%), Gaps = 30/252 (11%)
Query: 32 KAIKTFQQLLYVDPSYLRANEV------------HLRLGLMFKVNNEYDSALKHLTLCL- 78
+A F+++L +PS E L + +Y +A+ L L
Sbjct: 112 EAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE 171
Query: 79 IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKY 138
+ +L F E A+ L E + I+ L+ +
Sbjct: 172 VCVWDAELRELRAECFIKEGEPRKAISDLK-AASKLKN---DNTEAFYKISTLYYQLGDH 227
Query: 139 KTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGE---KSHRETLAIHCLQKSIE 195
+ + + LK D H + + + + E + R T A + ++
Sbjct: 228 ELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 285
Query: 196 ADPK----SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSN 251
+P + +S + CF+ K +A ++ N +
Sbjct: 286 TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAE----AYLI 341
Query: 252 REDYHQALNKYR 263
E Y +A+ Y
Sbjct: 342 EEMYDEAIQDYE 353
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 58.3 bits (141), Expect = 1e-09
Identities = 34/233 (14%), Positives = 74/233 (31%), Gaps = 20/233 (8%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEG 91
+A + +++ L VD A + L + + E+D LK L S L
Sbjct: 218 RAKECYKEALMVDAKCYEAFD-QLVSNHLLTADEEWDLVLK---LNYSTYSKEDAAFLRS 273
Query: 92 LMFKVNNEYDSALKH-LTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLK 150
L N+ + + + ++ A V+ ++ ++L+
Sbjct: 274 LYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILE 333
Query: 151 EDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRC 210
D P +L + +L E + ++ P+ + +G
Sbjct: 334 ID--PYNLDV--------YPLHLASLHES-GEKNKLYLISNDLVDRHPEKAVTWLAVGIY 382
Query: 211 FAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYR 263
+ V K+ +A + S W + F+ ++ QA++ Y
Sbjct: 383 YLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHS-FAIE---GEHDQAISAYT 431
Score = 55.2 bits (133), Expect = 1e-08
Identities = 31/223 (13%), Positives = 59/223 (26%), Gaps = 32/223 (14%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKH----LTLCLIDASPCTFT 87
+A + F + +DP + A + F + E+D A+ L P F
Sbjct: 391 EARRYFSKSSTMDPQFGPA---WIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFL 447
Query: 88 KLEGLMFKVNNEYDSALKH----LTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKD 143
G+ A ++ L D + + + + +TA +
Sbjct: 448 ---GMQHMQLGNILLANEYLQSSYALFQYDP--------LLLNELGVVAFNKSDMQTAIN 496
Query: 144 SYEQ---LLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS 200
++ L+K+ A LG Y K AI L + +
Sbjct: 497 HFQNALLLVKKTQSNEKPWAATWANLGHAY-------RKLKMYDAAIDALNQGLLLSTND 549
Query: 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
+ + A S+ S +
Sbjct: 550 ANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKR 592
Score = 52.1 bits (125), Expect = 1e-07
Identities = 30/185 (16%), Positives = 57/185 (30%), Gaps = 20/185 (10%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-ID-ASPCTFTKL 89
+AI + + +L LG+ A ++L + P +L
Sbjct: 425 QAISAYTTAARLFQGTHLP---YLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNEL 481
Query: 90 EGLMFKVNNEYDSALKHLTLCL---IDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYE 146
G++ ++ +A+ H L ++ H + + Y A D+
Sbjct: 482 -GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540
Query: 147 QLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYL 206
Q L A++ + +Y LAI L +S+ P + L
Sbjct: 541 QGLLLS--TND--ANVHTAIALVYL-------HKKIPGLAITHLHESLAISPNEIMASDL 589
Query: 207 LGRCF 211
L R
Sbjct: 590 LKRAL 594
Score = 48.7 bits (116), Expect = 2e-06
Identities = 32/198 (16%), Positives = 60/198 (30%), Gaps = 23/198 (11%)
Query: 52 EVHLRLGLMFKVNNEYDSALKHLTLCL-ID-ASPCTFTKL-EGLMFKVNNEYDSALKHLT 108
+ G ++ + +D A + L +D F +L + + E+D LK
Sbjct: 201 SMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLK--- 257
Query: 109 LCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLK--EDDLPVHL-KADICRQ 165
L S L + + + Y + E + L KAD
Sbjct: 258 LNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317
Query: 166 LGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYR 225
+ + K +E DP + L G+ + +L
Sbjct: 318 RS-RFI-------------DVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISN 363
Query: 226 NSVEKSEGNADTWCSIGN 243
+ V++ A TW ++G
Sbjct: 364 DLVDRHPEKAVTWLAVGI 381
Score = 41.7 bits (98), Expect = 2e-04
Identities = 29/260 (11%), Positives = 65/260 (25%), Gaps = 72/260 (27%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASP-------- 83
+ ++L +DP L +V+ + E + L+D P
Sbjct: 323 DVLAITTKILEIDPYNL---DVYPLHLASLHESGEKNKLYLISND-LVDRHPEKAVTWLA 378
Query: 84 --CTFTKLE--------------------------GLMFKVNNEYDSALKHLTLCLIDAS 115
+ + F + E+D A+ T
Sbjct: 379 VGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA---- 434
Query: 116 PCTFTKLEVRFHIAHL-----HEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMY 170
+L H+ +L H A + + + + +
Sbjct: 435 -----RLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA-----------LFQYDPLLL 478
Query: 171 HCIDTLGEKSHRETLAIHCLQKSIEA-------DPKSGQSLYLLGRCFAAVGKVHDAFLA 223
+ + + AI+ Q ++ + + LG + + A A
Sbjct: 479 NELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA 538
Query: 224 YRNSVEKSEGNADTWCSIGN 243
+ S +A+ +I
Sbjct: 539 LNQGLLLSTNDANVHTAIAL 558
Score = 40.2 bits (94), Expect = 7e-04
Identities = 32/212 (15%), Positives = 58/212 (27%), Gaps = 27/212 (12%)
Query: 64 NNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKL 122
+Y A L I +P L + +Y A L+
Sbjct: 97 QQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCC-TGDYARAKC-----LLTKEDLYNRSS 150
Query: 123 EVRFHIAHLHEVQRKYKTA------------KDSYEQLLKEDDLPVHLKADICRQLGWMY 170
R+ A ++ A + L D + L+A +C G +Y
Sbjct: 151 ACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVY 210
Query: 171 HCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK 230
A C ++++ D K ++ L + N
Sbjct: 211 T-------NLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTY 263
Query: 231 SEGNADTWCSIGNKDFSNNSNREDYHQALNKY 262
S+ +A S+ + S+ ED + Y
Sbjct: 264 SKEDAAFLRSLYMLKLNKTSH-EDELRRAEDY 294
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 57.7 bits (139), Expect = 2e-09
Identities = 23/154 (14%), Positives = 50/154 (32%), Gaps = 22/154 (14%)
Query: 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYH--CIDTLGEKS 180
E + ++ + +A + L + L + D+ E S
Sbjct: 138 EAWNQLGEVYWKKGDVTSAHTCFSGALTHCK-----NKVSLQNLSMVLRQLQTDSGDEHS 192
Query: 181 HRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAV--------GKVHDAFLAYRNSVE--- 229
++ + +++ D G+S Y+LG + ++ A AY + +
Sbjct: 193 RHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDR 252
Query: 230 KSEGNADTWCSIGNKDFSNNSNREDYHQALNKYR 263
K+ N D + + E Y +AL +
Sbjct: 253 KASSNPDLHLNRAT----LHKYEESYGEALEGFS 282
Score = 35.8 bits (82), Expect = 0.016
Identities = 26/298 (8%), Positives = 74/298 (24%), Gaps = 27/298 (9%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYD-SALKHLT--LCLIDASPCTFTK 88
K ++ +++L + + G V +Y A L+ + L + +
Sbjct: 86 KTLQQMEEVLGSAQVE---AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQ 142
Query: 89 LEGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEVRFH---IAHLHEVQRKYKTAKDS 144
L G ++ + SA + L + + L + E R +
Sbjct: 143 L-GEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQ 201
Query: 145 YEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQS- 203
+ ++ D + ++ ++ G+ A+ ++ + D K+ +
Sbjct: 202 AKLAVQMD--VLDGRSWYILGNAYLS-LYFNTGQNPKISQQALSAYAQAEKVDRKASSNP 258
Query: 204 --LYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNK 261
+A + + + L
Sbjct: 259 DLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQ----LLEFLSRLTSLLES 314
Query: 262 YRDLGDFLVINNIPT-SNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNK 318
+ + + + + AS + + + +N
Sbjct: 315 KGKTKPKKLQSMLGSLRPAHLGPCGDGRYQSASGQKMTLELKPLS-----TLQPGVNS 367
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 56.8 bits (138), Expect = 3e-09
Identities = 42/234 (17%), Positives = 79/234 (33%), Gaps = 25/234 (10%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-ID-ASPCTFTKL 89
A + QL +P L L + D + TL + + ++ L
Sbjct: 17 AAERHCMQLWRQEPDNTGV---LLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNL 73
Query: 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLL 149
G ++K + A++H + P ++ ++A + A +Y L
Sbjct: 74 -GNVYKERGQLQEAIEHYRHA-LRLKP---DFIDGYINLAAALVAAGDMEGAVQAYVSAL 128
Query: 150 KEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGR 209
+ + P + LG + + L E A C K+IE P + LG
Sbjct: 129 QYN--PDL--YCVRSDLGNLLKALGRLEE-------AKACYLKAIETQPNFAVAWSNLGC 177
Query: 210 CFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYR 263
F A G++ A + +V D + ++GN + +A+ Y
Sbjct: 178 VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNV----LKEARIFDRAVAAYL 227
Score = 53.7 bits (130), Expect = 2e-08
Identities = 34/214 (15%), Positives = 73/214 (34%), Gaps = 21/214 (9%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-ID-ASPCTFTKL 89
++ + +P A + LG ++K + A++H L + + L
Sbjct: 51 RSAHFSTLAIKQNPLLAEA---YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINL 107
Query: 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLL 149
+ + A++ + +P VR + +L + + + AK Y + +
Sbjct: 108 -AAALVAAGDMEGAVQAYVSA-LQYNP---DLYCVRSDLGNLLKALGRLEEAKACYLKAI 162
Query: 150 KEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGR 209
+ P A LG +++ + AIH +K++ DP + LG
Sbjct: 163 ETQ--PNF--AVAWSNLGCVFNAQGEIWL-------AIHHFEKAVTLDPNFLDAYINLGN 211
Query: 210 CFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
A AY ++ S +A ++
Sbjct: 212 VLKEARIFDRAVAAYLRALSLSPNHAVVHGNLAC 245
Score = 48.3 bits (116), Expect = 2e-06
Identities = 42/242 (17%), Positives = 75/242 (30%), Gaps = 41/242 (16%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-ID-ASPCTFTKL 89
+A + + + P++ A LG +F E A+ H + +D + L
Sbjct: 153 EAKACYLKAIETQPNFAVA---WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINL 209
Query: 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH------LHEVQRKYKTAKD 143
G + K +D A+ L L + H +E Q A D
Sbjct: 210 -GNVLKEARIFDRAVAAYLRAL---------SLSPNHAVVHGNLACVYYE-QGLIDLAID 258
Query: 144 SYEQ--LLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSG 201
+Y + L+ D L ++ E A C ++ P
Sbjct: 259 TYRRAIELQPHF------PDAYCNLANALKEKGSVAE-------AEDCYNTALRLCPTHA 305
Query: 202 QSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNK 261
SL L G + +A YR ++E A ++ + + +AL
Sbjct: 306 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS----VLQQQGKLQEALMH 361
Query: 262 YR 263
Y+
Sbjct: 362 YK 363
Score = 44.1 bits (105), Expect = 3e-05
Identities = 45/220 (20%), Positives = 84/220 (38%), Gaps = 33/220 (15%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-ID-ASPCTFTKL 89
AI F++ + +DP++L A ++ LG + K +D A+ L + L
Sbjct: 187 LAIHHFEKAVTLDPNFLDA---YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243
Query: 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH------LHEVQRKYKTAKD 143
++ D A+ + +L+ F A+ L E + A+D
Sbjct: 244 -ACVYYEQGLIDLAIDTYRRAI---------ELQPHFPDAYCNLANALKE-KGSVAEAED 292
Query: 144 SYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQS 203
Y L+ P H AD L + + E A+ +K++E P+ +
Sbjct: 293 CYNTALRLC--PTH--ADSLNNLANIKREQGNIEE-------AVRLYRKALEVFPEFAAA 341
Query: 204 LYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
L GK+ +A + Y+ ++ S AD + ++GN
Sbjct: 342 HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381
Score = 31.7 bits (73), Expect = 0.32
Identities = 27/191 (14%), Positives = 54/191 (28%), Gaps = 31/191 (16%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDAS-PCTFTKL 89
+A+ + + L + P++ VH L ++ D A+ + + P + L
Sbjct: 221 RAVAAYLRALSLSPNHA---VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL 277
Query: 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH-----LHEVQRKYKTAKDS 144
K A L +L + + Q + A
Sbjct: 278 -ANALKEKGSVAEAEDCYNTAL---------RLCPTHADSLNNLANIKREQGNIEEAVRL 327
Query: 145 YEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSL 204
Y + L+ P A L + L E A+ +++I P +
Sbjct: 328 YRKALEVF--PEF--AAAHSNLASVLQQQGKLQE-------ALMHYKEAIRISPTFADAY 376
Query: 205 YLLGRCFAAVG 215
+G +
Sbjct: 377 SNMGNTLKEMQ 387
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 53.2 bits (128), Expect = 2e-08
Identities = 17/153 (11%), Positives = 38/153 (24%), Gaps = 22/153 (14%)
Query: 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKED------------DLPVHLKADICRQLGWMY 170
+ + A + Q + + D + + + +L Y
Sbjct: 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAY 64
Query: 171 HCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK 230
+ A ++ ++ P + L G+ DA Y ++
Sbjct: 65 KKNRNYDK-------AYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL 117
Query: 231 SEGNADTWCSIGNKDFSNNSNREDYHQALNKYR 263
N +GN + E + L
Sbjct: 118 EADNLAANIFLGNYYYLTA---EQEKKKLETDY 147
Score = 49.4 bits (118), Expect = 3e-07
Identities = 28/198 (14%), Positives = 60/198 (30%), Gaps = 34/198 (17%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEG 91
+A+ F+Q + ++ + K + L
Sbjct: 22 QAVSYFRQTIALNIDRTEM----YYWTNVDKNSEISSKLATEL----------------A 61
Query: 92 LMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151
L +K N YD A L+ +P ++ A + + + K A YE++L+
Sbjct: 62 LAYKKNRNYDKAYLFYKE-LLQKAP---NNVDCLEACAEMQVCRGQEKDALRMYEKILQL 117
Query: 152 DDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCF 211
+ + LG Y+ + +E + K + + K + Y G
Sbjct: 118 E--ADN--LAANIFLGNYYY------LTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSK 167
Query: 212 AAVGKVHDAFLAYRNSVE 229
+ A + + +
Sbjct: 168 LFTTRYEKARNSLQKVIL 185
Score = 35.9 bits (83), Expect = 0.009
Identities = 16/123 (13%), Positives = 39/123 (31%), Gaps = 9/123 (7%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDAS-PCTFTKL 89
KA +++LL P+ + M + AL+ L ++A L
Sbjct: 72 KAYLFYKELLQKAPNNVDC---LEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFL 128
Query: 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLL 149
+ + L+ + + R+ +Y+ A++S ++++
Sbjct: 129 GNYYYLTAEQEKKKLETDYKK-LSSPT---KMQYARYRDGLSKLFTTRYEKARNSLQKVI 184
Query: 150 KED 152
Sbjct: 185 LRF 187
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 51.7 bits (124), Expect = 2e-08
Identities = 17/143 (11%), Positives = 40/143 (27%), Gaps = 19/143 (13%)
Query: 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSH 181
LE + + K+ A+ ++ L D H A LG + +
Sbjct: 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD----HYDARYFLGLGACRQSL-----GLY 68
Query: 182 RETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSI 241
+ A+ D + + C +G + A + ++ +
Sbjct: 69 EQ--ALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA----- 121
Query: 242 GNKDFSNNSNREDYHQALNKYRD 264
+ + +A+ +D
Sbjct: 122 ---HEALAARAGAMLEAVTARKD 141
Score = 40.5 bits (95), Expect = 1e-04
Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 4/74 (5%)
Query: 190 LQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNN 249
L + + LY LG GK DA ++ +A + +G +
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLG----ACR 62
Query: 250 SNREDYHQALNKYR 263
+ Y QAL Y
Sbjct: 63 QSLGLYEQALQSYS 76
Score = 33.9 bits (78), Expect = 0.023
Identities = 16/82 (19%), Positives = 23/82 (28%), Gaps = 6/82 (7%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLI--DASPCTFTKL 89
A K FQ L +D R L LG + Y+ AL+ + + P
Sbjct: 36 DAQKIFQALCMLDHYDARY---FLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92
Query: 90 EGLMFKVNNEYDSALKHLTLCL 111
+ D A
Sbjct: 93 -AECHLQLGDLDGAESGFYSAR 113
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 52.2 bits (125), Expect = 2e-08
Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245
+ LQ I A+P++ + LLG + ++ LAYR +++ NA+ + ++
Sbjct: 29 QLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVL 88
Query: 246 FSNNSNREDYHQALNKYR 263
+ ++ Q
Sbjct: 89 YYQA-SQHMTAQTRAMID 105
Score = 36.0 bits (83), Expect = 0.007
Identities = 12/111 (10%), Positives = 32/111 (28%), Gaps = 8/111 (7%)
Query: 126 FHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETL 185
+ + Q Y + +Y Q L+ L+ + + + +
Sbjct: 48 ALLGEYYLWQNDYSNSLLAYRQALQ-------LRGENAELYAALATVLYYQASQHMTAQ- 99
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNAD 236
+ K++ D +L LL A ++ ++ + +
Sbjct: 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150
Score = 32.1 bits (73), Expect = 0.13
Identities = 14/125 (11%), Positives = 44/125 (35%), Gaps = 11/125 (8%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLT--LCLIDASPCTFTKL 89
++ Q + +P LG + N+Y ++L L L + + L
Sbjct: 28 AQLQALQDKIRANPQNSEQ---WALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAAL 84
Query: 90 EGLMFKVNNEYDS--ALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQ 147
+++ +++ + + + ++ +A +Q Y A + +++
Sbjct: 85 ATVLYYQASQHMTAQTRAMID-KALALDS---NEITALMLLASDAFMQANYAQAIELWQK 140
Query: 148 LLKED 152
++ +
Sbjct: 141 VMDLN 145
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 51.0 bits (122), Expect = 2e-07
Identities = 19/121 (15%), Positives = 35/121 (28%), Gaps = 11/121 (9%)
Query: 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHR 182
+A + + ++ L P H + +LG + R
Sbjct: 24 VAWLMLADAELGMGDTTAGEMAVQRGLALH--PGH--PEAVARLGRVRW-------TQQR 72
Query: 183 ETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
A LQ++ +A P+ LG G+ A AY + + +
Sbjct: 73 HAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLL 132
Query: 243 N 243
N
Sbjct: 133 N 133
Score = 42.9 bits (101), Expect = 8e-05
Identities = 8/76 (10%), Positives = 26/76 (34%), Gaps = 1/76 (1%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245
+ L+ ++ P+ + +L +G +A + + G+ + +G
Sbjct: 8 ELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVR 67
Query: 246 FSNNSNREDYHQALNK 261
++ + L +
Sbjct: 68 WTQQ-RHAEAAVLLQQ 82
Score = 36.7 bits (85), Expect = 0.008
Identities = 18/189 (9%), Positives = 41/189 (21%), Gaps = 51/189 (26%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEG 91
+ + + + P A L L + + + L
Sbjct: 7 RELLQLRAAVRHRPQDFVA---WLMLADAELGMGDTTAGEMAVQRGL------------- 50
Query: 92 LMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151
++ + A+ L + Q+++ A +Q
Sbjct: 51 ---ALHPGHPEAVARL---------------------GRVRWTQQRHAEAAVLLQQASDA 86
Query: 152 DDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCF 211
P H I LG + + A ++ + P+ L
Sbjct: 87 A--PEH--PGIALWLGHALE-------DAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWR 135
Query: 212 AAVGKVHDA 220
+
Sbjct: 136 RRLCDWRAL 144
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 48.6 bits (116), Expect = 2e-07
Identities = 12/114 (10%), Positives = 34/114 (29%), Gaps = 11/114 (9%)
Query: 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSH 181
++ + A+ + + + A+ + L D D L +Y ++
Sbjct: 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD----FYNVDYIMGLAAIYQ-----IKEQF 86
Query: 182 RETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA 235
++ A + ++ G+C + A + ++ S
Sbjct: 87 QQ--AADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138
Score = 39.8 bits (93), Expect = 3e-04
Identities = 6/58 (10%), Positives = 14/58 (24%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
A + D + + L + + A Y + + + G
Sbjct: 55 AEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQ 112
Score = 34.8 bits (80), Expect = 0.012
Identities = 12/74 (16%), Positives = 23/74 (31%), Gaps = 4/74 (5%)
Query: 190 LQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNN 249
L+ +Y F G++ +A + +R N D +
Sbjct: 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAA----IY 80
Query: 250 SNREDYHQALNKYR 263
+E + QA + Y
Sbjct: 81 QIKEQFQQAADLYA 94
Score = 30.1 bits (68), Expect = 0.50
Identities = 9/82 (10%), Positives = 22/82 (26%), Gaps = 6/82 (7%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLI--DASPCTFTKL 89
+A F+ L D + + L ++++ ++ A +
Sbjct: 54 EAEVFFRFLCIYDFYNVDY---IMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110
Query: 90 EGLMFKVNNEYDSALKHLTLCL 111
G A + L +
Sbjct: 111 -GQCQLRLKAPLKAKECFELVI 131
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 50.5 bits (121), Expect = 3e-07
Identities = 32/234 (13%), Positives = 68/234 (29%), Gaps = 20/234 (8%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLE 90
+ F + L +D + + G M + YD A K +D
Sbjct: 288 EYYNYFDKALKLDSNNSSV---YYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL 344
Query: 91 GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQ--L 148
+ N++D + P EV A + + + A Y+
Sbjct: 345 ACLAYRENKFDDCETLFSEA-KRKFP---EAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400
Query: 149 LKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLG 208
L+ +++ + T+ A + L+K+ + DP+S Q+ L
Sbjct: 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFI----EATNLLEKASKLDPRSEQAKIGLA 456
Query: 209 RCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKY 262
+ + +A + S + + + +I Q +
Sbjct: 457 QMKLQQEDIDEAITLFEESADLARTMEEKLQAITFA------EAAKVQQRIRSD 504
Score = 47.4 bits (113), Expect = 4e-06
Identities = 29/241 (12%), Positives = 69/241 (28%), Gaps = 30/241 (12%)
Query: 33 AIKTFQQLLYVDPSYLRA--NEVHLRLGLMFKVNNEYDSALKHLTLCL------IDASPC 84
+ + D + N K + + A + L
Sbjct: 176 TFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEK 235
Query: 85 TFT--KLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAK 142
+ G+ + N+ A + + I+ P ++ ++A + +
Sbjct: 236 LAISLEHTGIFKFLKNDPLGAHEDIKKA-IELFP----RVNSYIYMALIMADRNDSTEYY 290
Query: 143 DSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQ 202
+ +++ LK D + + + G M + + A K+ E DP++
Sbjct: 291 NYFDKALKLD--SNN--SSVYYHRGQMNFILQNYDQ-------AGKDFDKAKELDPENIF 339
Query: 203 SLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKY 262
L K D + + K + +++ D+ +AL +Y
Sbjct: 340 PYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEI----LTDKNDFDKALKQY 395
Query: 263 R 263
Sbjct: 396 D 396
Score = 44.3 bits (105), Expect = 3e-05
Identities = 23/245 (9%), Positives = 64/245 (26%), Gaps = 22/245 (8%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASP----CTFT 87
K ++ + L + P Y + LR + ++ A+ L++ ++
Sbjct: 57 KVVEMSTKALELKPDYSKV---LLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPM 113
Query: 88 KLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQ 147
L + ++ + + + + R + ++
Sbjct: 114 LERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKP 173
Query: 148 LLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETL----------AIHCLQKSIEAD 197
L + +AD G + + + + +
Sbjct: 174 ELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLK 233
Query: 198 PKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQ 257
K SL G A + ++E +++ + ++R D +
Sbjct: 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALI----MADRNDSTE 288
Query: 258 ALNKY 262
N +
Sbjct: 289 YYNYF 293
Score = 37.0 bits (86), Expect = 0.006
Identities = 16/138 (11%), Positives = 36/138 (26%), Gaps = 6/138 (4%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245
+ K++E P + L +GK DA + + + D +
Sbjct: 58 VVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDL-SVLSLNGDFNDASIEPMLER 116
Query: 246 FSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINN-NKDFS 304
N + D S + ++ S + + F
Sbjct: 117 NLNKQAMSKLKEKFGDI----DTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFK 172
Query: 305 NNSNREDYHQALNKYRDL 322
+Y ++ ++L
Sbjct: 173 PELTFANYDESNEADKEL 190
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 47.6 bits (113), Expect = 6e-07
Identities = 20/144 (13%), Positives = 42/144 (29%), Gaps = 19/144 (13%)
Query: 122 LEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSH 181
LE + +A Y+ A ++ L D H + LG
Sbjct: 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD----HYDSRFFLGLGACRQ-------AMG 69
Query: 182 RETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSI 241
+ LAIH D + + C G++ +A + E +
Sbjct: 70 QYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE--------LIAN 121
Query: 242 GNKDFSNNSNREDYHQALNKYRDL 265
+ ++ +A+ +++
Sbjct: 122 XPEFXELSTRVSSMLEAIKLKKEM 145
Score = 33.0 bits (75), Expect = 0.056
Identities = 18/81 (22%), Positives = 24/81 (29%), Gaps = 4/81 (4%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLE 90
A FQ L +D R L LG + +YD A+ + +D F
Sbjct: 39 DAHXVFQALCVLDHYDSRF---FLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHA 95
Query: 91 GLMFKVNNEYDSALKHLTLCL 111
E A L L
Sbjct: 96 AECLLQXGELAEAESGLFLAQ 116
Score = 32.6 bits (74), Expect = 0.068
Identities = 19/119 (15%), Positives = 31/119 (26%), Gaps = 8/119 (6%)
Query: 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLT-LCLIDASPCTFTKLEG 91
T L + L E L + Y+ A LC++D F G
Sbjct: 6 GGGTIAMLNEISSDTL---EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLG 62
Query: 92 LMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLK 150
+ +YD A+ + FH A + A+ +
Sbjct: 63 ACRQAMGQYDLAIHSYSYG-AVMDIXEP---RFPFHAAECLLQXGELAEAESGLFLAQE 117
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 46.9 bits (111), Expect = 5e-06
Identities = 40/320 (12%), Positives = 96/320 (30%), Gaps = 40/320 (12%)
Query: 22 LQQFGKTLNIKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDA 81
L + +L+ K F + + + + + L + + + ++AL+ L
Sbjct: 24 LMEGENSLDDFEDKVFYRTEFQNREFK--ATMCNLLAYLKHLKGQNEAALECLRKAEELI 81
Query: 82 SPCTFTKLE----------GLMFKVNNEYDSALKHL----TLCLIDASPCTFTKLEVRFH 127
+ E ++ ++ +C +SP E+
Sbjct: 82 QQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCE 141
Query: 128 --IAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETL 185
L + + AK +E+ L++ P + + L + +D
Sbjct: 142 EGWTRLKCGGNQNERAKVCFEKALEKK--PKN--PEFTSGLAIASYRLDNWPPSQ----N 193
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAV----GKVHDAFLAYRNSVEKSEGNADTWCSI 241
AI L+++I +P + LL + + + ++EK+ G D S
Sbjct: 194 AIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSA 253
Query: 242 GNKDFSNNSNREDYHQALNKYRDLGDFLVIN-NIPTSNNNRQCYNSYSTSIASCKHINNN 300
+++ +A+ + L N + Y + ++ N
Sbjct: 254 AKF----YRRKDEPDKAIELLKKA---LEYIPNNAYLHCQIG--CCYRAKVFQVMNLREN 304
Query: 301 KDFSNNSNREDYHQALNKYR 320
+ E A+ +
Sbjct: 305 GMYGKRKLLELIGHAVAHLK 324
Score = 44.9 bits (106), Expect = 2e-05
Identities = 35/256 (13%), Positives = 72/256 (28%), Gaps = 58/256 (22%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL------------- 78
+ K ++ L P +V ++ +E D A++ L L
Sbjct: 231 EGEKLVEEALEKAPGV---TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287
Query: 79 -------IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHL 131
+ K+ A+ HL +A+ V +A L
Sbjct: 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKA-DEAND---NLFRVCSILASL 343
Query: 132 HEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQ 191
H + +Y+ A+ +++ +L K + + G + + E AIH
Sbjct: 344 HALADQYEEAEYYFQKEF-SKELTPVAKQLLHLRYG------NFQLYQMKCEDKAIHHFI 396
Query: 192 KSIEADPKS------------------------GQSLYLLGRCFAAVGKVHDAFLAYRNS 227
+ ++ + KS ++L++L K+ A
Sbjct: 397 EGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERG 456
Query: 228 VEKSEGNADTWCSIGN 243
+E G
Sbjct: 457 LESGSLIPSASSWNGE 472
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 43.6 bits (103), Expect = 9e-06
Identities = 16/104 (15%), Positives = 31/104 (29%), Gaps = 11/104 (10%)
Query: 126 FHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETL 185
A ++E + +++ P + R LG ++ ++ L
Sbjct: 21 MEEGLSMLKLANLAEAALAFEAVCQKE--PER--EEAWRSLGLTQA-------ENEKDGL 69
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVE 229
AI L + DPK L + A + R +
Sbjct: 70 AIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLL 113
Score = 43.2 bits (102), Expect = 1e-05
Identities = 12/78 (15%), Positives = 29/78 (37%), Gaps = 4/78 (5%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245
A + + +P+ ++ LG A K A +A ++ + ++
Sbjct: 36 AALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV-- 93
Query: 246 FSNNSNREDYHQALNKYR 263
+++N + + AL R
Sbjct: 94 --SHTNEHNANAALASLR 109
Score = 31.3 bits (71), Expect = 0.13
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
Query: 199 KSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQA 258
++ G + + +A LA+ +K + W S+G N E A
Sbjct: 15 MYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN----EKDGLA 70
Query: 259 LNKYR 263
+
Sbjct: 71 IIALN 75
Score = 30.1 bits (68), Expect = 0.32
Identities = 10/43 (23%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHL 74
AI +DP + VH L + + ++AL L
Sbjct: 69 LAIIALNHARMLDPKDI---AVHAALAVSHTNEHNANAALASL 108
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 46.3 bits (109), Expect = 9e-06
Identities = 22/141 (15%), Positives = 50/141 (35%), Gaps = 15/141 (10%)
Query: 123 EVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHR 182
+ ++A++ Q + A Y + L+ P A L + L E
Sbjct: 10 DSLNNLANIKREQGNIEEAVRLYRKALEVF--PEF--AAAHSNLASVLQQQGKLQE---- 61
Query: 183 ETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
A+ +++I P + +G + V A Y +++ + AD ++
Sbjct: 62 ---ALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 118
Query: 243 NKDFSNNSNREDYHQALNKYR 263
+ + + + +A+ YR
Sbjct: 119 S----IHKDSGNIPEAIASYR 135
Score = 37.9 bits (87), Expect = 0.004
Identities = 25/210 (11%), Positives = 59/210 (28%), Gaps = 18/210 (8%)
Query: 52 EVHLRLGLMFKVNNEYDSALKHLT--LCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTL 109
+ L + + + A++ L + + L + + + AL H
Sbjct: 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL-ASVLQQQGKLQEALMHYKE 68
Query: 110 CLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWM 169
I SP + ++ + + + + A Y + ++ + P AD L +
Sbjct: 69 A-IRISPTFA---DAYSNMGNTLKEMQDVQGALQCYTRAIQIN--PAF--ADAHSNLASI 120
Query: 170 YHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVE 229
+ + E AI + +++ P + L C V D + V
Sbjct: 121 HKDSGNIPE-------AIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173
Query: 230 KSEGNADTWCSIGNKDFSNNSNREDYHQAL 259
+ + +
Sbjct: 174 IVADQLEKNRLPSVHPHHSMLYPLSHGFRK 203
Score = 31.7 bits (71), Expect = 0.33
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 196 ADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
+ P SL L G + +A YR ++E A ++ +
Sbjct: 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLAS 51
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 45.1 bits (107), Expect = 2e-05
Identities = 23/225 (10%), Positives = 51/225 (22%), Gaps = 20/225 (8%)
Query: 23 QQFGKTLNIKAIKTFQQLLYVDPSYLRANEV----HLRLGLMFKVNNEYDSALKHLTLCL 78
Q+ ++A+ T L P L ++ + + + +AL L L
Sbjct: 8 HQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNL 67
Query: 79 IDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKY 138
+ L L +P ++ +
Sbjct: 68 TPEQVVAIASH-DGGKQALETVQRLLPVLCQA-HGLTP---QQVVAIASHDGGKQALETV 122
Query: 139 KTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP 198
+ Q P ++T+ + L ++ P
Sbjct: 123 QRLLPVLCQAHGLT--PEQ--VVAIASHDGGKQALETVQA-------LLPVLCQAHGLTP 171
Query: 199 KSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
+ ++ G A+ V + + S G
Sbjct: 172 EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGG 216
Score = 40.1 bits (94), Expect = 7e-04
Identities = 21/234 (8%), Positives = 46/234 (19%), Gaps = 25/234 (10%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLT--LCLIDASPCTFTKL 89
+ + Q + P + A + L L L
Sbjct: 90 RLLPVLCQAHGLTPQQVVA---IASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASH 146
Query: 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLL 149
+ + L L +P ++ + + Q
Sbjct: 147 -DGGKQALETVQALLPVLC-QAHGLTP---EQVVAIASNGGGKQALETVQRLLPVLCQAH 201
Query: 150 KEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGR 209
P G ++T+ + L ++ P+ ++ G
Sbjct: 202 GLT--PQQ--VVAIASNGGGKQALETVQR-------LLPVLCQAHGLTPQQVVAIASNGG 250
Query: 210 CFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYR 263
A+ V + + S E + L
Sbjct: 251 GKQALETVQRLLPVLCQAHGLTPQQVVAIASNSG----GKQALETVQRLLPVLC 300
Score = 38.2 bits (89), Expect = 0.003
Identities = 8/78 (10%), Positives = 18/78 (23%), Gaps = 4/78 (5%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245
+ L ++ P+ ++ G A+ V + + S
Sbjct: 363 LLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGG- 421
Query: 246 FSNNSNREDYHQALNKYR 263
E + L
Sbjct: 422 ---KQALETVQRLLPVLC 436
Score = 37.4 bits (87), Expect = 0.005
Identities = 6/58 (10%), Positives = 15/58 (25%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
+ L ++ P+ ++ G A+ V + + S
Sbjct: 295 LLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDG 352
Score = 37.4 bits (87), Expect = 0.006
Identities = 8/78 (10%), Positives = 18/78 (23%), Gaps = 4/78 (5%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245
+ L ++ P+ ++ A+ V + + S G
Sbjct: 261 LLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGG-- 318
Query: 246 FSNNSNREDYHQALNKYR 263
E + L
Sbjct: 319 --GKQALETVQRLLPVLC 334
Score = 37.0 bits (86), Expect = 0.007
Identities = 12/129 (9%), Positives = 26/129 (20%), Gaps = 15/129 (11%)
Query: 135 QRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSI 194
+ Q P G ++T+ + L ++
Sbjct: 289 LETVQRLLPVLCQAHGLT--PQQ--VVAIASNGGGKQALETVQR-------LLPVLCQAH 337
Query: 195 EADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNRED 254
P+ ++ A+ V + + S G E
Sbjct: 338 GLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGG----GKQALET 393
Query: 255 YHQALNKYR 263
+ L
Sbjct: 394 VQRLLPVLC 402
Score = 35.9 bits (83), Expect = 0.017
Identities = 8/78 (10%), Positives = 19/78 (24%), Gaps = 4/78 (5%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245
+ L ++ P+ ++ A+ V + + S G
Sbjct: 397 LLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG- 455
Query: 246 FSNNSNREDYHQALNKYR 263
E L++
Sbjct: 456 ---RPALESIVAQLSRPD 470
Score = 30.1 bits (68), Expect = 0.97
Identities = 4/44 (9%), Positives = 14/44 (31%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVE 229
+ L ++ P+ ++ G A+ + ++
Sbjct: 431 LLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALA 474
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 44.6 bits (106), Expect = 2e-05
Identities = 21/190 (11%), Positives = 50/190 (26%), Gaps = 19/190 (10%)
Query: 131 LHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCL 190
+ +Y++ + ++ + G L A+
Sbjct: 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPN-------AVLLF 87
Query: 191 QKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNS 250
+ +++ DPK ++ LG A + A A R +E N ++ + +
Sbjct: 88 EAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAV----SFT 143
Query: 251 NREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNRE 310
N QA RD + P + + + +
Sbjct: 144 NESLQRQACEILRD-----WLRYTP---AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195
Query: 311 DYHQALNKYR 320
+ + +
Sbjct: 196 LFLEVKELFL 205
Score = 43.1 bits (102), Expect = 7e-05
Identities = 32/212 (15%), Positives = 62/212 (29%), Gaps = 34/212 (16%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEG 91
AI ++ L + P + L + F + A + L L
Sbjct: 116 LAISALRRCLELKPDNQ---TALMALAVSFTNESLQRQACEILRDWL------------- 159
Query: 92 LMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151
+ Y + A L I + K+ + ++
Sbjct: 160 ---RYTPAYAHLVTPAEEGAGGAG------LGPSKRILGSLLSDSLFLEVKELFLAAVRL 210
Query: 152 DDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCF 211
D P + D+ LG +++ + A+ C ++ P LG
Sbjct: 211 D--PTSIDPDVQCGLGVLFNLSGEYDK-------AVDCFTAALSVRPNDYLLWNKLGATL 261
Query: 212 AAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
A + +A AYR ++E G + ++G
Sbjct: 262 ANGNQSEEAVAAYRRALELQPGYIRSRYNLGI 293
Score = 41.2 bits (97), Expect = 3e-04
Identities = 36/239 (15%), Positives = 67/239 (28%), Gaps = 55/239 (23%)
Query: 33 AIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGL 92
A+ F+ + DP ++ E LG N + A+ L CL
Sbjct: 83 AVLLFEAAVQQDPKHM---EAWQYLGTTQAENEQELLAISALRRCL-------------- 125
Query: 93 MFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLK-- 150
++ + +AL L + + + + A + L+
Sbjct: 126 --ELKPDNQTALMALAVSFTN---------------------ESLQRQACEILRDWLRYT 162
Query: 151 ---EDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQS--LY 205
+ + LG + +L S ++ DP S
Sbjct: 163 PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFL-EVKELFLAAVRLDPTSIDPDVQC 221
Query: 206 LLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNR-----EDYHQAL 259
LG F G+ A + ++ + W +G N N+ Y +AL
Sbjct: 222 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGAT--LANGNQSEEAVAAYRRAL 278
Score = 30.0 bits (68), Expect = 0.95
Identities = 29/218 (13%), Positives = 61/218 (27%), Gaps = 78/218 (35%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEG 91
+ + F + +DP+ + +V LG++F ++ EYD A+
Sbjct: 199 EVKELFLAAVRLDPTSIDP-DVQCGLGVLFNLSGEYDKAVDC------------------ 239
Query: 92 LMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH------LHEVQRKYKTAKDSY 145
+ +AL + ++ L + + A +Y
Sbjct: 240 --------FTAALS----------------VRPNDYLLWNKLGATLAN-GNQSEEAVAAY 274
Query: 146 EQ--LLKEDDLPVHL-KADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQ 202
+ L+ + C LG +HRE A+ +++ KS
Sbjct: 275 RRALELQPGYIRSRYNLGISCINLG------------AHRE--AVEHFLEALNMQRKSRG 320
Query: 203 SLYL-----------LGRCFAAVGKVHDAFLAYRNSVE 229
L + +G+ A +
Sbjct: 321 PRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 41.9 bits (99), Expect = 3e-05
Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 11/96 (11%)
Query: 141 AKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS 200
+ E +L + + + LG Y + A+ L+ +++ DP
Sbjct: 4 ITERLEAMLAQG--TDN--MLLRFTLGKTY-----AEHEQFDA--ALPHLRAALDFDPTY 52
Query: 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNAD 236
+ LG+ G A A+ + + ++ D
Sbjct: 53 SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGD 88
Score = 37.3 bits (87), Expect = 0.001
Identities = 13/92 (14%), Positives = 30/92 (32%), Gaps = 3/92 (3%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245
L+ + + + LG+ +A + A R +++ + W +G
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63
Query: 246 FSNNSN---REDYHQALNKYRDLGDFLVINNI 274
R+ + L + GD V+ +
Sbjct: 64 QGQGDRAGARQAWESGLAAAQSRGDQQVVKEL 95
Score = 28.5 bits (64), Expect = 1.4
Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHL 74
A+ + L DP+Y A LG + + A +
Sbjct: 37 AALPHLRAALDFDPTYSVA---WKWLGKTLQGQGDRAGARQAW 76
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 44.2 bits (105), Expect = 3e-05
Identities = 22/143 (15%), Positives = 40/143 (27%), Gaps = 15/143 (10%)
Query: 126 FHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETL 185
A ++E + + P + R LG ++ ++ L
Sbjct: 25 MEEGLSMLKLANLAEAALAFEAVCQAA--PER--EEAWRSLGLTQA-------ENEKDGL 73
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245
AI L + DPK L + A + R + D
Sbjct: 74 AIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD 133
Query: 246 FS----NNSNREDYHQALNKYRD 264
N + + + A N+YR+
Sbjct: 134 VDIDDLNVQSEDFFFAAPNEYRE 156
Score = 40.7 bits (96), Expect = 4e-04
Identities = 32/214 (14%), Positives = 63/214 (29%), Gaps = 40/214 (18%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEG 91
AI +DP + VH L + + ++AL L L
Sbjct: 73 LAIIALNHARMLDPKDI---AVHAALAVSHTNEHNANAALASLRAWL------------- 116
Query: 92 LMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQ--LL 149
+Y+ +D + F +Y+ + +
Sbjct: 117 ---LSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFA------APNEYRECRTLLHAALEM 167
Query: 150 KEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGR 209
+D +H LG +Y+ + A L++++E P Q LG
Sbjct: 168 NPNDAQLHA------SLGVLYNLSNNYDS-------AAANLRRAVELRPDDAQLWNKLGA 214
Query: 210 CFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
A + +A AY +++ + G ++
Sbjct: 215 TLANGNRPQEALDAYNRALDINPGYVRVMYNMAV 248
Score = 31.5 bits (72), Expect = 0.36
Identities = 9/73 (12%), Positives = 21/73 (28%), Gaps = 4/73 (5%)
Query: 191 QKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNS 250
++ G + + +A LA+ + + + W S+G +
Sbjct: 11 PFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLT----QA 66
Query: 251 NREDYHQALNKYR 263
E A+
Sbjct: 67 ENEKDGLAIIALN 79
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 43.5 bits (103), Expect = 4e-05
Identities = 28/197 (14%), Positives = 56/197 (28%), Gaps = 28/197 (14%)
Query: 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLL 149
E + ++ K + F F + E +
Sbjct: 37 ENQEAQNQVTVSASEKGYYFHTENP----FKDWPGAFEEGLKRLKEGDLPVTILFMEAAI 92
Query: 150 KEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGR 209
+D P A+ + LG + E AI LQ+ +E P + ++L L
Sbjct: 93 LQD--PGD--AEAWQFLGITQAENE-------NEQAAIVALQRCLELQPNNLKALMALAV 141
Query: 210 CFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSN-------------REDYH 256
+ DA A +N ++++ + +E Y
Sbjct: 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYL 201
Query: 257 QALNKYRDLGDFLVINN 273
+A ++ D+ D +
Sbjct: 202 EAAHQNGDMIDPDLQTG 218
Score = 40.8 bits (96), Expect = 3e-04
Identities = 31/212 (14%), Positives = 67/212 (31%), Gaps = 39/212 (18%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEG 91
AI Q+ L + P+ L + + L + + + A + L +
Sbjct: 117 AAIVALQRCLELQPNNL---KALMALAVSYTNTSHQQDACEALKNWI------------- 160
Query: 92 LMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151
K N +Y +K+ + + ++ + K+ Y + +
Sbjct: 161 ---KQNPKYKYLVKNKKGSPGLTRRMSKSPVD-----------SSVLEGVKELYLEAAHQ 206
Query: 152 DDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCF 211
+ + D+ LG ++H AI ++ P+ LG
Sbjct: 207 N--GDMIDPDLQTGLGVLFHLSGEFNR-------AIDAFNAALTVRPEDYSLWNRLGATL 257
Query: 212 AAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
A + +A AY ++E G + ++G
Sbjct: 258 ANGDRSEEAVEAYTRALEIQPGFIRSRYNLGI 289
Score = 29.3 bits (66), Expect = 1.6
Identities = 5/43 (11%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 31 IKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKH 73
+ + + + + + ++ LG++F ++ E++ A+
Sbjct: 194 EGVKELYLEAAHQNGDMIDP-DLQTGLGVLFHLSGEFNRAIDA 235
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 8e-05
Identities = 60/346 (17%), Positives = 105/346 (30%), Gaps = 110/346 (31%)
Query: 13 IVTSVRVPKLQQFGKTLNIKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALK 72
+ + V K+ QF + LN+ + F+ YL N++H + + N+ K
Sbjct: 68 VSSLVEPSKVGQFDQVLNL-CLTEFEN------CYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 73 HLTLCLIDASPCTFTKLEGLMFKVNNEYDSAL------KHLTLCLI-----DASPCTFTK 121
L I A K + + +SAL + L I + F +
Sbjct: 121 ELIKNYITA--RIMAKR-----PFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY-FEE 172
Query: 122 LE-------------VRFHIAHLHEVQRKYKTAKDSYEQ-------LLKEDDLP------ 155
L ++F L E+ R A+ + Q L + P
Sbjct: 173 LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLL 232
Query: 156 --------------VHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA----D 197
H + LG+ T GE A Q + A +
Sbjct: 233 SIPISCPLIGVIQLAHYVV-TAKLLGF------TPGELRSYLKGATGHSQGLVTAVAIAE 285
Query: 198 PKSGQS-----------LYLLG-RCFAAVGKVHDAF-------LAYRNSVEKSEGNADTW 238
S +S L+ +G RC ++A+ +S+E +EG
Sbjct: 286 TDSWESFFVSVRKAITVLFFIGVRC-------YEAYPNTSLPPSILEDSLENNEGVPSPM 338
Query: 239 CSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCY 284
SI + + +DY N + G + I+ + N +
Sbjct: 339 LSI--SNLT-QEQVQDYVNKTNSHLPAGKQVEISLV----NGAKNL 377
Score = 35.0 bits (80), Expect = 0.040
Identities = 42/257 (16%), Positives = 72/257 (28%), Gaps = 96/257 (37%)
Query: 10 VEGIVTSVRV---PKLQQFGKTLNIKAIKT-F------QQ---LLYVDPSYLRANEVHLR 56
+G+VT+V + + F ++ KAI F + + PS L + +
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSV-RKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN-N 331
Query: 57 LGL---MFKVN--------------NEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNE 99
G+ M ++ N + A K + + L++ + G
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN-GAKNLV-VSG-------- 381
Query: 100 YDSALKHLTLCL--------IDASPCTFTK---------LEV--RFHIAHLHEVQRKYKT 140
+L L L L +D S F++ L V FH L
Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINK 441
Query: 141 AKDSYEQLLKEDDL--PVH--------------LKADICRQL-----GWMY-------HC 172
D+ PV+ + I + W H
Sbjct: 442 DLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHI 501
Query: 173 ID-------TLGEKSHR 182
+D LG +HR
Sbjct: 502 LDFGPGGASGLGVLTHR 518
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 41.1 bits (97), Expect = 2e-04
Identities = 31/235 (13%), Positives = 63/235 (26%), Gaps = 14/235 (5%)
Query: 52 EVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLC 110
+V R NN Y A++ + + + +YD A K +
Sbjct: 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE-T 62
Query: 111 LIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMY 170
T K + + + + A Y+ + D D+ Q+G +
Sbjct: 63 YFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD--TTR--LDMYGQIGSYF 118
Query: 171 HCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEK 230
+ LAI ++K I + Y LG+ + + A ++ +E
Sbjct: 119 Y-------NKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL 171
Query: 231 SEGNADTWCSIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYN 285
+ + A Y L + + +
Sbjct: 172 KPNIYIGYLWRARA-NAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANE 225
Score = 41.1 bits (97), Expect = 3e-04
Identities = 13/145 (8%), Positives = 38/145 (26%), Gaps = 9/145 (6%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245
AI Q +++ D +G F G A + + + + +G
Sbjct: 93 AIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAY 152
Query: 246 FSNNSNRE---DYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCK---HINN 299
+ N + + + L + ++ +N + + + +
Sbjct: 153 YYNKEYVKADSSFVKVLELKPN--IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCA 210
Query: 300 NKDFSNNSNREDYHQAL-NKYRDLG 323
+ ++ + Y
Sbjct: 211 PGGAKYKDELIEANEYIAYYYTINR 235
Score = 30.3 bits (69), Expect = 0.81
Identities = 32/194 (16%), Positives = 68/194 (35%), Gaps = 34/194 (17%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-ID-ASPCTFTKL 89
AI+ +Q + D + L +++ ++G F + A++++ + P F +L
Sbjct: 92 LAIQQYQAAVDRDTTRL---DMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYEL 148
Query: 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLH--------EVQRKYKTA 141
G + N EY A L +L+ +I +L + K A
Sbjct: 149 -GQAYYYNKEYVKADSSFVKVL---------ELKPNIYIGYLWRARANAAQDPDTKQGLA 198
Query: 142 KDSYEQLLK-EDDLPVHLKADIC---RQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEAD 197
K YE+L++ K ++ + + Y + A + + D
Sbjct: 199 KPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK-------ADAAWKNILALD 251
Query: 198 PKSGQSLYLLGRCF 211
P + +++ L
Sbjct: 252 PTNKKAIDGLKMKL 265
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 40.3 bits (95), Expect = 3e-04
Identities = 21/159 (13%), Positives = 53/159 (33%), Gaps = 25/159 (15%)
Query: 127 HIAHLHEVQRKYKTAKDSYEQLL----KEDDLPVHLKADICRQLGWMYHCIDTLGE---- 178
+ +++ ++ A+ S++ L K D + Q+G + G
Sbjct: 31 MLGYVYAFMDRFDEARASFQALQQQAQKSGDHT--AEHRALHQVGMVER---MAGNWDAA 85
Query: 179 -KSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSE----- 232
+ E + E + + Y + G + A Y S+ ++
Sbjct: 86 RRCFLEERELL--ASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQ 143
Query: 233 -GNADTWCSIGN--KDFSNNSN-REDYHQALNKYRDLGD 267
A + +G+ + N ++ + +A + + +L D
Sbjct: 144 VAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELED 182
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 39.8 bits (94), Expect = 5e-04
Identities = 16/123 (13%), Positives = 35/123 (28%), Gaps = 11/123 (8%)
Query: 141 AKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS 200
+ + H+ + Q + A K+IE + +
Sbjct: 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEK-------AAEAFTKAIEENKED 56
Query: 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALN 260
++V ++ A Y ++E A + GN +E Y +A +
Sbjct: 57 AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN----VYVVKEMYKEAKD 112
Query: 261 KYR 263
+
Sbjct: 113 MFE 115
Score = 37.1 bits (87), Expect = 0.005
Identities = 34/223 (15%), Positives = 73/223 (32%), Gaps = 35/223 (15%)
Query: 32 KAIKTFQQLLYVDPSYLRA-NEVHLRLGLMFKVNNEYDSALKHLTLCL-ID-ASPCTFTK 88
+ + P + + +Y+ A + T + + +
Sbjct: 3 SSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYIN 62
Query: 89 LEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH------LHEVQRKYKTAK 142
+ NE + AL L +L+ A+ + YK AK
Sbjct: 63 F-ANLLSSVNELERALAFYDKAL---------ELDSSAATAYYGAGNVYVV-KEMYKEAK 111
Query: 143 DSYEQ--LLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS 200
D +E+ ++ D+ LG + ++ A+ LQ+++E +
Sbjct: 112 DMFEKALRAGMEN------GDLFYMLGTVLVKLEQPKL-------ALPYLQRAVELNEND 158
Query: 201 GQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
++ + G C A G + +A + E+ G+AD + + G
Sbjct: 159 TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGV 201
Score = 34.4 bits (80), Expect = 0.028
Identities = 32/230 (13%), Positives = 60/230 (26%), Gaps = 53/230 (23%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLE- 90
KA + F + + + ++ + NE + AL L +L+
Sbjct: 41 KAAEAFTKAIEENKEDA---IPYINFANLLSSVNELERALAFYDKAL---------ELDS 88
Query: 91 ---------GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH------LHEVQ 135
G ++ V Y A L + + L +
Sbjct: 89 SAATAYYGAGNVYVVKEMYKEAKDMFEKAL---------RAGMENGDLFYMLGTVLVK-L 138
Query: 136 RKYKTAKDSYEQ--LLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKS 193
+ K A ++ L E+D + Q G L E A+
Sbjct: 139 EQPKLALPYLQRAVELNEND------TEARFQFGMCLANEGMLDE-------ALSQFAAV 185
Query: 194 IEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
E DP + Y G +A A +++ + +
Sbjct: 186 TEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKL 235
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 37.2 bits (87), Expect = 7e-04
Identities = 13/73 (17%), Positives = 28/73 (38%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245
A+ ++ +E DP + Y LG+ + + + DA Y +E + +D
Sbjct: 26 ALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQD 85
Query: 246 FSNNSNREDYHQA 258
+ ++H
Sbjct: 86 AKLKAEGLEHHHH 98
Score = 29.2 bits (66), Expect = 0.64
Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHL 74
+A+ F++L+ DP Y+ + LG +++ + D A+
Sbjct: 25 RALALFEELVETDPDYVGT---YYHLGKLYERLDRTDDAIDTY 64
Score = 26.1 bits (58), Expect = 7.6
Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 3/74 (4%)
Query: 197 DPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN--KDFSNNSN-RE 253
DP+ + Y L + A + VE T+ +G + + +
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62
Query: 254 DYHQALNKYRDLGD 267
Y Q + R+ G
Sbjct: 63 TYAQGIEVAREEGT 76
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 39.2 bits (92), Expect = 9e-04
Identities = 8/58 (13%), Positives = 26/58 (44%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
A ++ ++++DPK+ + + + + A ++R ++ +A+ + G
Sbjct: 27 ATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84
Score = 38.8 bits (91), Expect = 0.001
Identities = 31/220 (14%), Positives = 67/220 (30%), Gaps = 28/220 (12%)
Query: 49 RANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDA-SPCTFTKLEGLMFKVNNEYDSALKH 106
+ + + +L + + +Y A + L D + + +++ D A +
Sbjct: 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVR-AEIYQYLKVNDKAQES 64
Query: 107 LTLCLIDASPCTFTKLEVRFHIAH------LHEVQRKYKTAKDSYEQLLKEDDLPVHLKA 160
L ++ + L + + +++ L + P A
Sbjct: 65 FRQAL---------SIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIA 115
Query: 161 DICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDA 220
G C G + LA L++S+ A P+ + L R G++ DA
Sbjct: 116 --NLNKGI---CSAKQG----QFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDA 166
Query: 221 FLAYRNSVEKSEGNADTWCSIGNKDFSNNSNRED-YHQAL 259
++ + E +G K N + Y
Sbjct: 167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEA 206
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 39.1 bits (92), Expect = 0.001
Identities = 13/85 (15%), Positives = 34/85 (40%), Gaps = 7/85 (8%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN-- 243
A+ +++++ +P+ ++LY L R +G V+ A + V ++ + +
Sbjct: 24 ALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAY 83
Query: 244 -----KDFSNNSNREDYHQALNKYR 263
+ + QAL+ +
Sbjct: 84 VALYRQAEDRERGKGYLEQALSVLK 108
Score = 34.0 bits (79), Expect = 0.037
Identities = 13/116 (11%), Positives = 34/116 (29%), Gaps = 15/116 (12%)
Query: 135 QRKYKTAKDSYEQLLKEDDLPVHLK---ADICRQLGWMYHCIDTLGEKSHRET----LAI 187
A ++ + L+ L Y + E R A+
Sbjct: 52 LGLVNPALENGKTLVA-------RTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQAL 104
Query: 188 HCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
L+ + +P+ G +A +G+ A + + ++ + + ++
Sbjct: 105 SVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALED-TPEIRSALAE 159
Score = 32.1 bits (74), Expect = 0.17
Identities = 33/217 (15%), Positives = 59/217 (27%), Gaps = 53/217 (24%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKH-----------------L 74
A+ F++ L +P E L + AL++ L
Sbjct: 23 AALTLFERALKENPQDP---EALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVL 79
Query: 75 TLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH---- 130
+ + + + + AL L ++ R+ H
Sbjct: 80 SEAYVALY-----RQAEDRERGKGYLEQALSVLKDAE---------RVNPRYAPLHLQRG 125
Query: 131 --LHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIH 188
+ A+ S +Q L +D +I L +Y + L E A+
Sbjct: 126 LVYAL-LGERDKAEASLKQALALED-----TPEIRSALAELYLSMGRLDE-------ALA 172
Query: 189 CLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYR 225
K++E PK GK +A A
Sbjct: 173 QYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAA 209
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 38.1 bits (89), Expect = 0.002
Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 7/109 (6%)
Query: 135 QRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSI 194
+ + EQ+L L +A + + G +Y D+LG LA + +++
Sbjct: 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLY---DSLG----LRALARNDFSQAL 70
Query: 195 EADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
P + LG G A+ A+ + +E + G
Sbjct: 71 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI 119
Score = 33.4 bits (77), Expect = 0.072
Identities = 31/218 (14%), Positives = 64/218 (29%), Gaps = 27/218 (12%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDAS-PCTFTKL 89
A F Q L + P EV LG+ +D+A + L +D +
Sbjct: 61 LARNDFSQALAIRPDMP---EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR 117
Query: 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLH----EVQRKYKTAKDSY 145
G+ A L + + L E + K AK+
Sbjct: 118 -GIALYYGGRDKLAQDDLLAFY---------QDDPNDPFRSLWLYLAEQKLDEKQAKEVL 167
Query: 146 EQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLY 205
+Q ++ D + + + E++ E + ++ +
Sbjct: 168 KQHFEKSD-------KEQWGWNIVEFYLGNISEQTLME-RLKADATDNTSLAEHLSETNF 219
Query: 206 LLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
LG+ + ++G + A ++ +V + N
Sbjct: 220 YLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALL 257
Score = 31.9 bits (73), Expect = 0.21
Identities = 18/176 (10%), Positives = 46/176 (26%), Gaps = 19/176 (10%)
Query: 91 GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLK 150
+ + + + L + L + + ++ + L++ A++ + Q L
Sbjct: 12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 71
Query: 151 EDDLPVHLK---ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLL 207
++ ++ LG A +E DP +
Sbjct: 72 -------IRPDMPEVFNYLGIYLTQAGNFDA-------AYEAFDSVLELDPTYNYAHLNR 117
Query: 208 GRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNR--EDYHQALNK 261
G G+ A + + + + + + E Q K
Sbjct: 118 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 38.4 bits (90), Expect = 0.002
Identities = 24/176 (13%), Positives = 48/176 (27%), Gaps = 44/176 (25%)
Query: 128 IAHLHEVQRKYKTAKDSYEQLLK--EDDLPVHLKADICRQLGWMYHCIDTLGE-----KS 180
+ +E ++ +DL + I QLG Y L + +
Sbjct: 15 EGERLCKSGDCRAGVSFFEAAVQVGTEDLK--TLSAIYSQLGNAYF---YLHDYAKALEY 69
Query: 181 HRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVE--------KSE 232
H L + ++I ++ LG +G +A + + ++ E
Sbjct: 70 HHHDLTLA---RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 126
Query: 233 GNA-----DTWCSIGNKDFSNNSNRED----------------YHQALNKYRDLGD 267
A + + + G Y + L+ LGD
Sbjct: 127 ARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGD 182
Score = 36.5 bits (85), Expect = 0.008
Identities = 28/173 (16%), Positives = 55/173 (31%), Gaps = 29/173 (16%)
Query: 128 IAHLHEVQRKYKTAKDSYEQLLK-----EDDLPVHLKADICRQLGWMYHCIDTLGE---- 178
+ + + +++TA + Y++ L +D ++A C LG Y L +
Sbjct: 233 LGNAYIFLGEFETASEYYKKTLLLARQLKDR---AVEAQSCYSLGNTYT---LLQDYEKA 286
Query: 179 -KSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSE----- 232
H + LAI + + G++ + LG + A+G A +E S
Sbjct: 287 IDYHLKHLAI---AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDK 343
Query: 233 -GNADTWCSIGNKDFS---NNSNREDYHQALNKY-RDLGDFLVINNIPTSNNN 280
G ++ + + S + L S N
Sbjct: 344 SGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNGVRPKLGRRHSMEN 396
Score = 30.7 bits (70), Expect = 0.62
Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 22/118 (18%)
Query: 127 HIAHLHEVQRKYKTAKDSYEQLLK-EDDLPVHLK-ADICRQLGWMYHCIDTLGEKSHRET 184
+ + + + + Y+ A D + + L +L + C LG Y LG H +
Sbjct: 272 SLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTA---LGN--HDQ- 325
Query: 185 LAIHCLQKSIE-------------ADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVE 229
A+H +K +E A +LG ++ + +S+
Sbjct: 326 -AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLN 382
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 37.4 bits (86), Expect = 0.003
Identities = 31/244 (12%), Positives = 69/244 (28%), Gaps = 27/244 (11%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEG 91
+ I Q++ P +V L + + +Y L + ++
Sbjct: 17 QCINEAQRVKPSSPERDVERDVFLYRAYLAQ--RKYGVVLDEIKPSSAPELQAV--RMFA 72
Query: 92 LMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151
++ D+ + L + + T A ++ + A + Q +
Sbjct: 73 EYLASHSRRDAIVAELDREMSRSVD--VTNTTFLLMAASIYFYDQNPDAALRTLHQ--GD 128
Query: 152 DDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCF 211
+ + I +L R LA L+K + D + +
Sbjct: 129 SLECMAMTVQILLKLD--------------RLDLARKELKKMQDQDEDATLTQLATAWVS 174
Query: 212 AAVG--KVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNRE---DYHQALNKYRDLG 266
A G K+ DA+ ++ +K + +AL+K
Sbjct: 175 LAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP 234
Query: 267 DFLV 270
+ L+
Sbjct: 235 ETLI 238
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 37.7 bits (88), Expect = 0.004
Identities = 35/250 (14%), Positives = 61/250 (24%), Gaps = 62/250 (24%)
Query: 90 EGLMFKVNNEYDSALKHLTLCL-----IDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDS 144
E + D +L +
Sbjct: 14 ENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLEL---ALEGERLCNAGDCRAGVAF 70
Query: 145 YEQLLK--EDDLPVHLKADICRQLGWMYHCIDTLGE-----KSHRETLAIHCLQKSIEAD 197
++ ++ +DL + I QLG Y LG+ + H+ L + KS+
Sbjct: 71 FQAAIQAGTEDLRT--LSAIYSQLGNAYF---YLGDYNKAMQYHKHDLTLA---KSMNDR 122
Query: 198 PKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQ 257
+S LG +G+ +A +
Sbjct: 123 LGEAKSSGNLGNTLKVMGRFDEA-AIC------------------------------CER 151
Query: 258 ALNKYRDLGDFLVI----NNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYH 313
L R LGD L N+ + + + + + E Y
Sbjct: 152 HLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRA----VEFYQ 207
Query: 314 QALNKYRDLG 323
+ L RDLG
Sbjct: 208 ENLKLMRDLG 217
Score = 34.6 bits (80), Expect = 0.040
Identities = 31/280 (11%), Positives = 81/280 (28%), Gaps = 51/280 (18%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHL---RLGLMFKVNNEYDSALKHLTLCL---IDASPC- 84
+ + + L G + + + + +
Sbjct: 26 GGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTL 85
Query: 85 --TFTKLEGLMFKVNNEYDSALKHLTLCL-----IDASPCTFTKLEVRFHIAHLHEVQRK 137
+++L G + +Y+ A+++ L ++ ++ + +V +
Sbjct: 86 SAIYSQL-GNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS---GNLGNTLKVMGR 141
Query: 138 YKTAKDSYEQLLK-----EDDLPVHLKADICRQLGWMYH----------CIDTLGEKSHR 182
+ A E+ L D L LG +YH +
Sbjct: 142 FDEAAICCERHLTLARQLGDRLSE---GRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA 198
Query: 183 ETLAIHCLQKS------IEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVE--KSEGN 234
T A+ Q++ + G++ LG + +G A ++ + + G+
Sbjct: 199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258
Query: 235 ----ADTWCSIGN--KDFSNNSNREDYH-QALNKYRDLGD 267
++GN + +++ + L +LG+
Sbjct: 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGE 298
Score = 33.8 bits (78), Expect = 0.060
Identities = 41/279 (14%), Positives = 90/279 (32%), Gaps = 49/279 (17%)
Query: 32 KAIKTFQQLLYVDPSYLRAN-EVHLRLGLMFKVNNEYDSALKHLTLCL-----IDASPCT 85
+ FQ + LR ++ +LG + +Y+ A+++ L ++
Sbjct: 66 AGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125
Query: 86 FTKLE--GLMFKVNNEYDSALKHLTLCL-----IDASPCTFTKLEVRFHIAHLHEVQRKY 138
G KV +D A L + L +++ +++ + K+
Sbjct: 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRAL---YNLGNVYHAKGKH 182
Query: 139 KTAKDSYEQLLKEDD-----LPVHLKA-DICRQLGWMYHCIDTLG--------------- 177
++ + + + + + + R LG G
Sbjct: 183 LGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAA 242
Query: 178 EKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSE----- 232
+ H+E L I + ++ LG +G+ DA Y+ ++ +
Sbjct: 243 IEHHQERLRI---AREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER 299
Query: 233 -GNADTWCSIGNKDFSNNSNRE--DYH-QALNKYRDLGD 267
A + S+GN + +YH + L ++LGD
Sbjct: 300 EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338
Score = 28.8 bits (65), Expect = 2.8
Identities = 11/71 (15%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 127 HIAHLHEVQRKYKTAKDSYEQLLK-EDDLPVHLK-ADICRQLGWMYHCIDTLGEKSHRET 184
+ + + + ++ TA + + + L +L + A C LG + +G H
Sbjct: 308 SLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSA---IGG--HER- 361
Query: 185 LAIHCLQKSIE 195
A+ ++ ++
Sbjct: 362 -ALKYAEQHLQ 371
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 37.2 bits (87), Expect = 0.004
Identities = 15/58 (25%), Positives = 23/58 (39%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
A L+K++E DP S + L F + A YR ++ NA + G
Sbjct: 56 AKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGG 113
Score = 36.9 bits (86), Expect = 0.005
Identities = 31/220 (14%), Positives = 59/220 (26%), Gaps = 41/220 (18%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDA-SPCTFTKL 89
+ + A +++LGL + + A L L ID S L
Sbjct: 21 MGDQNPLKTDKGRDEARDA---YIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAAL 77
Query: 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH------LHEVQRKYKTAKD 143
++F+ E A + L + R L+E Q++Y+ A
Sbjct: 78 -AVVFQTEMEPKLADEEYRKAL---------ASDSRNARVLNNYGGFLYE-QKRYEEAYQ 126
Query: 144 SYEQ----LLKEDDLPVHLKADIC-RQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP 198
+ L + V + Q+ + A +KS+ +
Sbjct: 127 RLLEASQDTLYPERSRVFENLGLVSLQMK--------------KPAQAKEYFEKSLRLNR 172
Query: 199 KSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTW 238
+ + A Y + NA +
Sbjct: 173 NQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSL 212
Score = 36.1 bits (84), Expect = 0.009
Identities = 20/138 (14%), Positives = 43/138 (31%), Gaps = 17/138 (12%)
Query: 128 IAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAI 187
+A + + + + K A + Y + L D + A + G + E A
Sbjct: 77 LAVVFQTEMEPKLADEEYRKALASD--SRN--ARVLNNYGGFLYEQKRYEE-------AY 125
Query: 188 HCLQKSIEA--DPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245
L ++ + P+ + LG + K A + S+ + + +
Sbjct: 126 QRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLL 185
Query: 246 FSNNSNREDYHQALNKYR 263
+ +Y A Y
Sbjct: 186 Y----KEREYVPARQYYD 199
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 36.8 bits (86), Expect = 0.006
Identities = 21/129 (16%), Positives = 39/129 (30%), Gaps = 21/129 (16%)
Query: 128 IAHLHEVQRKYKTAKDSYEQLLK--EDDLPVHLKADICRQLGWMYHCIDTLGE-----KS 180
+ +E ++ +DL + I QLG Y L + +
Sbjct: 11 EGERLCKSGDCRAGVSFFEAAVQVGTEDLK--TLSAIYSQLGNAYF---YLHDYAKALEY 65
Query: 181 HRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAF------LAYRNSVEKSEGN 234
H L + ++I ++ LG +G +A L + G
Sbjct: 66 HHHDLTLA---RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGE 122
Query: 235 ADTWCSIGN 243
A ++GN
Sbjct: 123 ARALYNLGN 131
Score = 34.5 bits (80), Expect = 0.032
Identities = 31/158 (19%), Positives = 57/158 (36%), Gaps = 26/158 (16%)
Query: 128 IAHLHEVQRKYKTAKDSYEQLL----KEDDLPVHLKADICRQLGWMYHCIDTLGE----- 178
+ + H + ++ A ++EQ L + D LG Y LGE
Sbjct: 189 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE--RRAYSNLGNAYI---FLGEFETAS 243
Query: 179 KSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAF------LAYRNSVEKSE 232
+ +++TL + + ++ QS Y LG + + A LA ++
Sbjct: 244 EYYKKTLLLA---RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI 300
Query: 233 GNADTWCSIGN--KDFSNNSNREDYH-QALNKYRDLGD 267
G S+GN N+ + + L R++GD
Sbjct: 301 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD 338
Score = 29.1 bits (66), Expect = 2.0
Identities = 26/173 (15%), Positives = 58/173 (33%), Gaps = 34/173 (19%)
Query: 127 HIAHLHEVQRKYKTAKDSYEQLL----KEDDLPVHLKADICRQLGWMYHCI--------- 173
++ + +V + A ++ L + +D +A LG +YH
Sbjct: 88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV--GEARALYNLGNVYHAKGKSFGCPGP 145
Query: 174 ----DTLGEKSHRETLAIHCLQKS------IEADPKSGQSLYLLGRCFAAVGKVHDAFLA 223
+ + + A+ +++ + G++ LG +G DA +A
Sbjct: 146 QDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA 205
Query: 224 YRNSVE--KSEGN----ADTWCSIGN--KDFSNNSNREDYH-QALNKYRDLGD 267
+ + K G+ + ++GN +Y+ + L R L D
Sbjct: 206 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 258
Score = 28.8 bits (65), Expect = 2.7
Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 7/75 (9%)
Query: 200 SGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN----ADTWCSIGN--KDFSNNSNRE 253
S L L G G + +V+ + + + +GN + +
Sbjct: 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKAL 63
Query: 254 DYH-QALNKYRDLGD 267
+YH L R +GD
Sbjct: 64 EYHHHDLTLARTIGD 78
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 35.2 bits (82), Expect = 0.010
Identities = 31/158 (19%), Positives = 57/158 (36%), Gaps = 26/158 (16%)
Query: 128 IAHLHEVQRKYKTAKDSYEQLL----KEDDLPVHLKADICRQLGWMYHCIDTLGE----- 178
+ + H + ++ A ++EQ L + D LG Y LGE
Sbjct: 15 LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE--RIAYSNLGNAYI---FLGEFETAS 69
Query: 179 KSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAF------LAYRNSVEKSE 232
+ +++TL + + ++ QS Y LG + + A LA ++
Sbjct: 70 EYYKKTLLL---ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI 126
Query: 233 GNADTWCSIGN--KDFSNNSNREDYH-QALNKYRDLGD 267
G S+GN N+ + + L R++GD
Sbjct: 127 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD 164
Score = 28.3 bits (64), Expect = 2.3
Identities = 21/113 (18%), Positives = 45/113 (39%), Gaps = 19/113 (16%)
Query: 127 HIAHLHEVQRKYKTAKDSYEQLL----KEDDLPVHLKADICRQLGWMYHCIDTLGEKSHR 182
++ + + +++TA + Y++ L + D ++A C LG Y L + +
Sbjct: 54 NLGNAYIFLGEFETASEYYKKTLLLARQLKDRA--VEAQSCYSLGNTYT---LLQD--YE 106
Query: 183 ETLAIHCLQKS------IEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVE 229
+ AI K ++ G++ + LG + A+G A +E
Sbjct: 107 K--AIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 36.0 bits (83), Expect = 0.010
Identities = 30/217 (13%), Positives = 58/217 (26%), Gaps = 28/217 (12%)
Query: 32 KAIKTFQQ-LLYVDPSYLRANEVHLRLGLMFKVNNEYDSAL----KHLTLCLIDASPC-- 84
KA K + + P Y A + + + FK + + A + + S
Sbjct: 16 KAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHA 75
Query: 85 --TFTKLEGLMFKVNNEYDSALKHL--TLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKT 140
F + G+M K A++++ + + T L E
Sbjct: 76 AKAFEQA-GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME-PLDLSK 133
Query: 141 AKDSYEQLLK--EDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADP 198
A Y+Q E++ + A++ + + + + A LQK
Sbjct: 134 AVHLYQQAAAVFENEERLRQAAELIGKASRLL-------VRQQKFDEAAASLQKEKSMYK 186
Query: 199 KSGQ------SLYLLGRCFAAVGKVHDAFLAYRNSVE 229
+ A R S
Sbjct: 187 EMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYS 223
Score = 32.6 bits (74), Expect = 0.14
Identities = 27/234 (11%), Positives = 63/234 (26%), Gaps = 39/234 (16%)
Query: 100 YDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLK 159
A K+L + P + A + ++ + AKD+Y Q + H
Sbjct: 14 IAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAE-----AHAN 68
Query: 160 ADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQ------SLYLLGRCFAA 213
+ + + R A+ ++K+ ++G +L G+
Sbjct: 69 NRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP 128
Query: 214 VGKVHDAFLAYRNSVEKSEGN------ADTWCSIGNKDFSNNSNREDYHQALNKYRDLGD 267
+ A Y+ + E A+ ++ + +A +
Sbjct: 129 -LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASR--LL--VRQQKFDEAAASLQKEKS 183
Query: 268 FLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRD 321
+ + + + + +R DY A R+
Sbjct: 184 --MYKEMENYPTCYKKCI----AQVLVQL-----------HRADYVAAQKCVRE 220
Score = 31.8 bits (72), Expect = 0.25
Identities = 20/197 (10%), Positives = 48/197 (24%), Gaps = 24/197 (12%)
Query: 32 KAIKTFQQLLYVDP---SYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL------IDAS 82
+A + Q S A + + G+M K A++++
Sbjct: 54 QAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPD 113
Query: 83 PCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFH--IAHLHEVQRKYKT 140
+ A+ + + L Q+K+
Sbjct: 114 TAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDE 173
Query: 141 AKDSYEQLLK--EDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIE--- 195
A S ++ ++ C + A C+++S
Sbjct: 174 AAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVA-------AQKCVRESYSIPG 226
Query: 196 -ADPKSGQSLYLLGRCF 211
+ + +L L + +
Sbjct: 227 FSGSEDCAALEDLLQAY 243
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 36.2 bits (83), Expect = 0.016
Identities = 8/78 (10%), Positives = 17/78 (21%), Gaps = 4/78 (5%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245
+ L ++ P ++ G A+ V + + S
Sbjct: 279 LLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDG-- 336
Query: 246 FSNNSNREDYHQALNKYR 263
E + L
Sbjct: 337 --GKQALETVQRLLPVLC 352
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 34.7 bits (80), Expect = 0.020
Identities = 24/143 (16%), Positives = 50/143 (34%), Gaps = 15/143 (10%)
Query: 126 FHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETL 185
++ L ++ +K A D++ + ++ + IC +G MY + + E
Sbjct: 10 WNEGVLAADKKDWKGALDAFSAV-QDPH------SRICFNIGCMYTILKNMTE------- 55
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245
A +SI D + + G + K A + ++ + GN I
Sbjct: 56 AEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ 115
Query: 246 FSNNSNREDYHQALNKYRDLGDF 268
F + Y+ A Y ++
Sbjct: 116 FKLFACEVLYNIAF-MYAKKEEW 137
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 34.7 bits (81), Expect = 0.021
Identities = 11/58 (18%), Positives = 19/58 (32%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
A+ L++ +AD LG + G V S+ + N +G
Sbjct: 27 AVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGL 84
Score = 33.6 bits (78), Expect = 0.040
Identities = 11/58 (18%), Positives = 21/58 (36%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
L++S+ P + + +LG + V K A E + N + +G
Sbjct: 61 GTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGV 118
Score = 29.3 bits (67), Expect = 1.2
Identities = 27/212 (12%), Positives = 59/212 (27%), Gaps = 55/212 (25%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEG 91
+A+ +Q+ D + +V L LG+ + D + L L
Sbjct: 26 QAVMLLEQVYDADAFDV---DVALHLGIAYVKTGAVDRGTELLERSL------------- 69
Query: 92 LMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQ--LL 149
+ L L + +KY A +
Sbjct: 70 ---ADAPDNVKVATVLGLTYVQ---------------------VQKYDLAVPLLIKVAEA 105
Query: 150 KEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGR 209
+ ++ +LG + E AI + ++ P G+ +
Sbjct: 106 NPIN------FNVRFRLGVALDNLGRFDE-------AIDSFKIALGLRPNEGKVHRAIAF 152
Query: 210 CFAAVGKVHDAFLAYRNSVEKSEGNADTWCSI 241
+ +G+ +A ++ + E EG + +
Sbjct: 153 SYEQMGRHEEALPHFKKANELDEGASVELALV 184
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 33.1 bits (76), Expect = 0.021
Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 186 AIHCLQKSIEADPKS-GQSLYLLGRCFAAVGKVHDAFLAYRNSVE--------KSEGNAD 236
A+ L++ ++ +P ++ YL+G + +G A Y++++E ++
Sbjct: 19 ALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARKMVM 78
Query: 237 TWCSIGNKDFSNNSNREDYHQ 257
+ NKD N +H
Sbjct: 79 DILNFYNKDMYNQLEHHHHHH 99
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 34.5 bits (80), Expect = 0.029
Identities = 22/200 (11%), Positives = 53/200 (26%), Gaps = 32/200 (16%)
Query: 52 EVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEGLMFKVNNEYDSALKHLTLC 110
+ G F ++D A++H + EY++A+ L
Sbjct: 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNR-AAAEYEKGEYETAISTLNDA 64
Query: 111 LIDASPCTFTKLEVRFHIAH-----LHEVQRKYKTAKDSYEQ--LLKEDDLPVHLKADIC 163
+ + + ++ + L H ADI
Sbjct: 65 V---------EQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADIL 115
Query: 164 RQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLA 223
+L + + +P+ + L G+ + +A A
Sbjct: 116 TKLR--------------NAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKA 161
Query: 224 YRNSVEKSEGNADTWCSIGN 243
Y ++++ +A + +
Sbjct: 162 YTEMIKRAPEDARGYSNRAA 181
Score = 32.9 bits (76), Expect = 0.098
Identities = 31/233 (13%), Positives = 58/233 (24%), Gaps = 25/233 (10%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLE 90
+AI+ + + + EY++A+ L + K+
Sbjct: 23 EAIEHYNKAWELHKDI----TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVI 78
Query: 91 GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLK 150
F L L I+ K A + R + E
Sbjct: 79 SKSFARIGNAYHKLGDLKKT-IEYYQ----KSLTEHRTADILTKLRNAEKELKKAEAEAY 133
Query: 151 EDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRC 210
+ P KA+ R G Y A+ + I+ P+ +
Sbjct: 134 VN--PE--KAEEARLEGKEYF-------TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAA 182
Query: 211 FAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYR 263
A + +A ++EK + ++Y AL
Sbjct: 183 LAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT----AQIAVKEYASALETLD 231
Score = 30.2 bits (69), Expect = 0.78
Identities = 26/217 (11%), Positives = 50/217 (23%), Gaps = 30/217 (13%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLE 90
AI T + + + F L L + T +
Sbjct: 56 TAISTLNDAVEQGREMRAD---YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT- 111
Query: 91 GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAH-----LHEVQRKYKTAKDSY 145
+ + LK + + + + A +Y
Sbjct: 112 ADILTKLRNAEKELKKAEAEA---------YVNPEKAEEARLEGKEYFTKSDWPNAVKAY 162
Query: 146 EQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLY 205
+++K P A + + E AI K+IE DP ++
Sbjct: 163 TEMIKRA--PED--ARGYSNRAAALAKLMSFPE-------AIADCNKAIEKDPNFVRAYI 211
Query: 206 LLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIG 242
AV + A + K + +
Sbjct: 212 RKATAQIAVKEYASALETLDAARTKDAEVNNGSSARE 248
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide
repeat, response regulator helix-turn-HELX binding,
3-helix bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 32.1 bits (73), Expect = 0.22
Identities = 21/155 (13%), Positives = 53/155 (34%), Gaps = 32/155 (20%)
Query: 126 FHIAHLHEVQRKYKTAKDSYEQLLK-----EDDLPVHLKADICRQLGWMYHCIDTLGEKS 180
F QR+Y +A +++ +D + KA+ ++ Y+ +
Sbjct: 107 FFRGMYELDQREYLSAIKFFKKAESKLIFVKDRI---EKAEFFFKMSESYYYMK------ 157
Query: 181 HRETLAIHCLQKSIE-------ADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSE- 232
+ ++ +++ E + + Q L F + + DA ++ + +E
Sbjct: 158 -QTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEA 216
Query: 233 -----GNADTWCSIGNKDFSNNSNREDYHQALNKY 262
T +IG +++ Y A+ +
Sbjct: 217 EKQPQLMGRTLYNIGL----CKNSQSQYEDAIPYF 247
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 30.8 bits (71), Expect = 0.26
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
AI QK++E DP+S ++ Y LG + G +A Y+ ++E +A+ W ++GN
Sbjct: 54 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN 111
Score = 28.9 bits (66), Expect = 1.0
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
AI QK++E DP+S ++ Y LG + G +A Y+ ++E +A+ W ++GN
Sbjct: 20 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN 77
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 29.7 bits (68), Expect = 0.38
Identities = 12/60 (20%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVE--KSEGNADTWCSIGN 243
+I +K+I+ DP+ + + G+ + + +A Y + + E N D W + +
Sbjct: 25 SIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 29.7 bits (68), Expect = 0.50
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
AI QK++E DP + ++ Y LG + G +A Y+ ++E NA+ ++GN
Sbjct: 62 AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 119
Score = 28.5 bits (65), Expect = 1.2
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
AI QK++E DP + ++ Y LG + G +A Y+ ++E NA+ W ++GN
Sbjct: 28 AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGN 85
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 30.7 bits (69), Expect = 0.52
Identities = 8/52 (15%), Positives = 24/52 (46%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADT 237
A+ ++++E D +S ++ + LG+C + +A + + ++
Sbjct: 57 ALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 108
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN
binding domain, orotate complex, oxidoreductase; HET:
MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Length = 336
Score = 30.6 bits (70), Expect = 0.67
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 241 IG-NKDFSNNSNREDYHQALNKYRDLGDFLVIN 272
IG NKD ++DY + K ++ IN
Sbjct: 140 IGKNKDTPVEQGKDDYLICMEKIYAYAGYIAIN 172
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio
parahaemolyticus RIMD 22 structural genomics, PSI-2,
protein structure initiative; HET: MES; 2.14A {Vibrio
parahaemolyticus}
Length = 176
Score = 29.9 bits (67), Expect = 0.79
Identities = 7/76 (9%), Positives = 19/76 (25%), Gaps = 1/76 (1%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245
A++ +Q + G C + A ++ + I +
Sbjct: 25 ALNVIQTLSDELQSRGDVKLAKADCLLETKQFELA-QELLATIPLEYQDNSYKSLIAKLE 83
Query: 246 FSNNSNREDYHQALNK 261
+ + L +
Sbjct: 84 LHQQAAESPELKRLEQ 99
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 30.0 bits (67), Expect = 0.93
Identities = 23/165 (13%), Positives = 38/165 (23%), Gaps = 41/165 (24%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN-- 243
++ + IE PK+ Q + + + + + N W
Sbjct: 151 EMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVI 210
Query: 244 ------------------KDFSNNS---NREDYHQALNKYRDLGDF-----LVINNIPTS 277
+D NNS R Y D + I
Sbjct: 211 QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV 270
Query: 278 NNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQALNKYRDL 322
+N + N K + Y LN+ DL
Sbjct: 271 PHNESAW-------------NYLKGILQDRGLSKYPNLLNQLLDL 302
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 30.0 bits (67), Expect = 1.0
Identities = 27/190 (14%), Positives = 49/190 (25%), Gaps = 23/190 (12%)
Query: 30 NIKAIKTFQQLLYVDP---SYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-------- 78
A +F + + A ++ FK +A+ L +
Sbjct: 53 LNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ 112
Query: 79 IDASPCTFTKLEGLMFKVNNEYDSALKHLT--LCLIDASPCTFTKLEVRFHIAHLHEVQR 136
+L ++ ++Y A+ + A L +
Sbjct: 113 FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG 172
Query: 137 KYKTAKDSYEQLLKE---DDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKS 193
+Y A D Y +L+K + L D + G A LQ+
Sbjct: 173 QYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVA-------AARTLQEG 225
Query: 194 IEADPKSGQS 203
DP S
Sbjct: 226 QSEDPNFADS 235
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein
biogenesis, GET PAT GET5 binding, protein transport;
1.98A {Chaetomium thermophilum}
Length = 336
Score = 30.0 bits (67), Expect = 1.1
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 52 EVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSAL 104
E+H +G ++ E+++A KHL L + SP ++E +K + + + L
Sbjct: 137 ELHHVVGTLYVEEGEFEAAEKHLVLGTKE-SPEVLARMEYEWYKQDESHTAPL 188
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 28.9 bits (65), Expect = 1.4
Identities = 13/52 (25%), Positives = 20/52 (38%)
Query: 185 LAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNAD 236
A+ ++IE D K + Y A+GK A Y V+ + D
Sbjct: 65 YALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKD 116
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 27.7 bits (63), Expect = 1.6
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
AI QK++E DP + ++ Y LG + G +A Y+ ++E NA+ ++GN
Sbjct: 28 AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A
{Xanthomonas campestris}
Length = 129
Score = 27.7 bits (62), Expect = 2.5
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLT 75
A F+ L+ P++ +A L+LGL + A + L
Sbjct: 57 LAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQ 100
Score = 27.4 bits (61), Expect = 3.6
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 186 AIHCLQKSIEADPKS---GQSLYLLGRCFAAVGKVHDAFLAYRNSVEK 230
A +E P +LY LG + A A +R+ V +
Sbjct: 21 ASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR 68
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 28.5 bits (63), Expect = 2.9
Identities = 15/133 (11%), Positives = 44/133 (33%), Gaps = 21/133 (15%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEY----DSALKHLTLCL-----IDAS 82
+A + +++ P + A L+ V + + L L + +
Sbjct: 217 RASELLGEIVQSSPEFTYA---RAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPEL 273
Query: 83 PCT--FTKLEGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLEVRFHIAHLHEVQRKYK 139
+++ + V + D + + + + ++ S + L ++E++ +
Sbjct: 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLL------GKVYEMKGMNR 327
Query: 140 TAKDSYEQLLKED 152
A D+Y
Sbjct: 328 EAADAYLTAFNLR 340
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 28.5 bits (63), Expect = 3.0
Identities = 17/121 (14%), Positives = 33/121 (27%), Gaps = 23/121 (19%)
Query: 126 FHIAHLHEVQRKYKTA----------KDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDT 175
F + +Y + + + L L +C
Sbjct: 279 FKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL---------- 328
Query: 176 LGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA 235
K T A+ C K++ D + + LY G + + A + +E + N
Sbjct: 329 ---KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385
Query: 236 D 236
Sbjct: 386 A 386
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 27.3 bits (61), Expect = 4.1
Identities = 8/52 (15%), Positives = 24/52 (46%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADT 237
A+ ++++E D +S ++ + LG+C + +A + + ++
Sbjct: 62 ALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 113
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial;
triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein,
membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A
{Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A*
3sfk_A*
Length = 415
Score = 28.0 bits (63), Expect = 4.2
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 241 IG-NKDFSNNSNREDYHQALNKYRDLGDFLVIN 272
IG NKD + N +D +NK D++ IN
Sbjct: 188 IGKNKD-TVNIV-DDLKYCINKIGRYADYIAIN 218
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 28.0 bits (62), Expect = 5.0
Identities = 11/78 (14%), Positives = 21/78 (26%), Gaps = 11/78 (14%)
Query: 99 EYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHL 158
+ +A L +IA + +++ A+ E+L
Sbjct: 230 DKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELN--------- 280
Query: 159 KADICRQLGWMYHCIDTL 176
+ R L M L
Sbjct: 281 --ENARSLRLMSDLNRNL 296
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1
subunit alpha; geranylgeranyltrasferase, ggtase,
ggtase-I, PGGT, prenyltransferase, farnesyltransferase;
HET: B3P GRG; 1.80A {Candida albicans}
Length = 306
Score = 27.7 bits (61), Expect = 5.1
Identities = 31/168 (18%), Positives = 58/168 (34%), Gaps = 21/168 (12%)
Query: 86 FTKLEGLMFKV--NNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKD 143
+ ++ GL+ + EY H+T I+ +T RF+I + R D
Sbjct: 32 YKQIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNIL-KNLPNRNLYDELD 90
Query: 144 SYEQLLKEDDLPVHLKA-DICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQ 202
E++ + + K I + I L L+ + +DPK+
Sbjct: 91 WCEEIALD-----NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKN-- 143
Query: 203 SLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNS 250
+ ++ + D F + ++ E S D + D NNS
Sbjct: 144 --H---HVWSYRKWLVDTFDLHNDAKELS--FVDKVI---DTDLKNNS 181
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 27.4 bits (61), Expect = 5.1
Identities = 10/51 (19%), Positives = 16/51 (31%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNAD 236
A + + DPK ++ LG + A AY +E
Sbjct: 64 AAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS 114
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 5.4
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 31 IKAIKTFQQLLYVDPSYLRANEVHL-RLGLMFKVNNEYDSALKHL 74
+ AI F L ++ + + + L R+ LM + ++ A K +
Sbjct: 545 VNAILDF--LPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase;
HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A*
2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A*
3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A*
2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Length = 367
Score = 27.5 bits (62), Expect = 5.6
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 241 IG-NKDFSNNSNREDYHQALNKYRDLGDFLVIN 272
+G NK S ++ EDY + + L D+LV+N
Sbjct: 153 LGKNKT-SVDAA-EDYAEGVRVLGPLADYLVVN 183
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri,
dihydroorotate; alpha-beta barrel, TIM barrel,
oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium
falciparum} SCOP: c.1.4.1
Length = 443
Score = 27.3 bits (61), Expect = 7.0
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 241 IG-NKDFSNNSNREDYHQALNKYRDLGDFLVIN 272
IG NKD + N +D +NK D++ IN
Sbjct: 186 IGKNKD-TVNIV-DDLKYCINKIGRYADYIAIN 216
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 26.4 bits (59), Expect = 7.9
Identities = 10/58 (17%), Positives = 26/58 (44%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
A+ +++I DP ++ +G +++ K +A Y+ ++E N ++
Sbjct: 65 AVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI 122
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia
chrysanthemi} SCOP: b.80.1.9
Length = 400
Score = 27.1 bits (59), Expect = 8.0
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 3/79 (3%)
Query: 240 SIGNKDFSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKH-IN 298
++GN + + + + ++ + G VINN TS N Y S + KH
Sbjct: 254 AVGNHRITRSVAFGNVSKGFDQNNNAGGVTVINN--TSYKNGINYGFGSNVQSGQKHYFR 311
Query: 299 NNKDFSNNSNREDYHQALN 317
NN S + + N
Sbjct: 312 NNVSLSASVTVSNADAKSN 330
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase,
lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A
{Aquifex aeolicus} PDB: 2z95_A*
Length = 345
Score = 27.2 bits (61), Expect = 8.1
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 26 GKTLNIKAI--KTFQQLLYVDPSYLRANEVHLRLG 58
G+ +N K I T + ++ V + R EV + +G
Sbjct: 272 GEGINEKGIDRNTGKVIVEVSEEFFRPAEVDILVG 306
>3q15_A PSP28, response regulator aspartate phosphatase H;
tetratricopeptide repeat, 3-helix bundle, phosphorelay
signa transduction, phosphatase; 2.19A {Bacillus
subtilis}
Length = 378
Score = 27.1 bits (60), Expect = 8.2
Identities = 19/152 (12%), Positives = 52/152 (34%), Gaps = 26/152 (17%)
Query: 126 FHIAHLHEVQRKYKTAKDSYEQLLK-EDDLPVHL-KADICRQLGWMYHCIDTLGEKSHRE 183
F Q++Y A Y + K + + KA+ ++ Y+ + +
Sbjct: 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK-------QT 157
Query: 184 TLAIHCLQKSIE-------ADPKSGQSLYLLGRCFAAVGKVHDAF------LAYRNSVEK 230
++++ + ++++ ++ QSL+++ + A L ++
Sbjct: 158 HVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN 217
Query: 231 SEGNADTWCSIGNKDFSNNSNREDYHQALNKY 262
A + +I N + D A+ +
Sbjct: 218 DRFIAISLLNIAN----SYDRSGDDQMAVEHF 245
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 27.3 bits (61), Expect = 8.4
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 8/27 (29%)
Query: 9 LVEGIVTSVRVPKLQQ-----FGKTLN 30
++ G + R+P L+Q FGK L+
Sbjct: 340 IIGG---TTRIPTLKQSISEAFGKPLS 363
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein
complex I, protein TRAN; 2.90A {Saccharomyces
cerevisiae} PDB: 3mv3_B
Length = 310
Score = 27.0 bits (59), Expect = 9.9
Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 6/108 (5%)
Query: 3 YVIQKNLVEGIVTSVRVPKLQQFGKTLNIKAIKTFQQLLYVDPSYLRANEVHLRLGLMFK 62
+ TS L + + L+ K I+ + LL + + L
Sbjct: 55 LLALGQYQSQDPTSKLGKVLDLYVQFLDTKNIEELENLLKDKQN---SPYELYLLATAQA 111
Query: 63 VNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKV---NNEYDSALKHL 107
+ + D +L+ + + T+L L +V NN +A
Sbjct: 112 ILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIF 159
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.402
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,688,150
Number of extensions: 264004
Number of successful extensions: 1045
Number of sequences better than 10.0: 1
Number of HSP's gapped: 773
Number of HSP's successfully gapped: 220
Length of query: 324
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 230
Effective length of database: 4,077,219
Effective search space: 937760370
Effective search space used: 937760370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)