RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8160
(324 letters)
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT
{Human (Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 57.0 bits (136), Expect = 8e-10
Identities = 37/213 (17%), Positives = 81/213 (38%), Gaps = 19/213 (8%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLE 90
AI F++ + +DP++L A ++ LG + K +D A+ L + +
Sbjct: 187 LAIHHFEKAVTLDPNFLDA---YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243
Query: 91 GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLK 150
++ D A+ I+ P + ++A+ + + A+D Y L
Sbjct: 244 ACVYYEQGLIDLAIDTYRRA-IELQP---HFPDAYCNLANALKEKGSVAEAEDCYNTAL- 298
Query: 151 EDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRC 210
+C + + + + A+ +K++E P+ + L
Sbjct: 299 ----------RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348
Query: 211 FAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
GK+ +A + Y+ ++ S AD + ++GN
Sbjct: 349 LQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381
Score = 40.8 bits (94), Expect = 1e-04
Identities = 36/234 (15%), Positives = 63/234 (26%), Gaps = 25/234 (10%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEG 91
A + QL +P L L + D + TL +
Sbjct: 17 AAERHCMQLWRQEPDNTGV---LLLLSSIHFQCRRLDRSAHFSTLAI------------- 60
Query: 92 LMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151
K N A +L + R + + Y +
Sbjct: 61 ---KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDM 117
Query: 152 DDLPVHLKA--DICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGR 209
+ + L + + L + R A C K+IE P + LG
Sbjct: 118 EGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGC 177
Query: 210 CFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYHQALNKYR 263
F A G++ A + +V D + ++GN + +A+ Y
Sbjct: 178 VFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGN----VLKEARIFDRAVAAYL 227
Score = 38.9 bits (89), Expect = 6e-04
Identities = 22/185 (11%), Positives = 52/185 (28%), Gaps = 19/185 (10%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL-IDASPCTFTKLE 90
+A+ + + L + P++ H L ++ D A+ + +
Sbjct: 221 RAVAAYLRALSLSPNHAVV---HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNL 277
Query: 91 GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLK 150
K A L + ++A++ Q + A Y + L+
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLCPTHADS----LNNLANIKREQGNIEEAVRLYRKALE 333
Query: 151 EDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLLGRC 210
P A L + + + A+ +++I P + +G
Sbjct: 334 VF--PEF--AAAHSNLASVLQ-------QQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382
Query: 211 FAAVG 215
+
Sbjct: 383 LKEMQ 387
Score = 38.5 bits (88), Expect = 8e-04
Identities = 22/196 (11%), Positives = 60/196 (30%), Gaps = 11/196 (5%)
Query: 126 FHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETL 185
+AH ++ A+ QL +++ P + + L ++ + R
Sbjct: 3 MELAHREYQAGDFEAAERHCMQLWRQE--PDN--TGVLLLLSSIHF-------QCRRLDR 51
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245
+ H +I+ +P ++ LG + G++ +A YR+++ D + ++
Sbjct: 52 SAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAAL 111
Query: 246 FSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSN 305
+ ++ + D + + + + +
Sbjct: 112 VAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVA 171
Query: 306 NSNREDYHQALNKYRD 321
SN A +
Sbjct: 172 WSNLGCVFNAQGEIWL 187
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId:
9606]}
Length = 497
Score = 50.6 bits (120), Expect = 1e-07
Identities = 20/286 (6%), Positives = 75/286 (26%), Gaps = 29/286 (10%)
Query: 29 LNIKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTK 88
+++++ + +Q + + L ++ + + + D K
Sbjct: 1 MSLQSAQYLRQAEVLKADMT---DSKLGPAEVWTSRQALQDLYQKML--VTDLEYALDKK 55
Query: 89 LEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQL 148
+E ++ N+ + + + L + + ++++ L Y +
Sbjct: 56 VEQDLW--NHAFKNQITTLQGQAKNRANPNRSEVQANLS-LFLEAASGFYTQLLQELCTV 112
Query: 149 LK---EDDLPVHLKADICRQLG------------------WMYHCIDTLGEKSHRETLAI 187
+ I + + + ++ + A
Sbjct: 113 FNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAE 172
Query: 188 HCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFS 247
+ + + P +GQ L ++ G Y S+ ++
Sbjct: 173 SYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232
Query: 248 NNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIAS 293
+R++ + F+ + + + + + +
Sbjct: 233 ALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEE 278
Score = 39.4 bits (91), Expect = 4e-04
Identities = 22/200 (11%), Positives = 45/200 (22%), Gaps = 18/200 (9%)
Query: 22 LQQFGKTLNIKAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDA 81
Q I T Q + R+ + + Y L+ L
Sbjct: 57 EQDLWNHAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD 116
Query: 82 SPCTFTKLE-GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKT 140
PC + G++ + +K + H+ + + +
Sbjct: 117 LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ------HCLVHLGDIARYRNQTSQ 170
Query: 141 AKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKS 200
A+ Y + QL + I +SI
Sbjct: 171 AESYYRHAAQLV----PSNGQPYNQLAILAS-------SKGDHLTTIFYYCRSIAVKFPF 219
Query: 201 GQSLYLLGRCFAAVGKVHDA 220
+ L + + + D
Sbjct: 220 PAASTNLQKALSKALESRDE 239
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 264
Score = 37.7 bits (87), Expect = 0.001
Identities = 9/58 (15%), Positives = 17/58 (29%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGN 243
A+ L ++I+A PK G A S++ + +
Sbjct: 15 ALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRH 72
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1
(PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 36.3 bits (82), Expect = 0.003
Identities = 32/268 (11%), Positives = 65/268 (24%), Gaps = 40/268 (14%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEG 91
A+ F+ + DP ++ A LG N + A+ L CL +
Sbjct: 37 NAVLLFEAAVQQDPKHMEA---WQYLGTTQAENEQELLAISALRRCLELKPDNQTALMAL 93
Query: 92 LMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151
+ N + + +P + A + + L
Sbjct: 94 AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFL 153
Query: 152 DDLPVHLKADICRQLGWMYHCIDTLG---------------------------------- 177
+ + L A LG
Sbjct: 154 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLG 213
Query: 178 ---EKSHRETLAIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGN 234
++ A+ ++++E P +S Y LG +G +A + ++ +
Sbjct: 214 ATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 273
Query: 235 ADTWCSIGNKDFSNNSNREDYHQALNKY 262
G + S L +
Sbjct: 274 RGPRGEGGAMSENIWSTLRLALSMLGQS 301
Score = 31.7 bits (70), Expect = 0.10
Identities = 15/117 (12%), Positives = 35/117 (29%)
Query: 186 AIHCLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKD 245
A+ + +++ DPK ++ LG A + A A R +E N ++
Sbjct: 38 AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 97
Query: 246 FSNNSNREDYHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKD 302
+ + R+ + R + + + S + +
Sbjct: 98 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLE 154
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 201
Score = 32.2 bits (72), Expect = 0.051
Identities = 15/186 (8%), Positives = 50/186 (26%), Gaps = 13/186 (6%)
Query: 135 QRKYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSI 194
RKY A Y + + + L + M + ++++
Sbjct: 17 GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQA-----------LADCRRAL 65
Query: 195 EADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNRED 254
E D +S ++ + LG+C + +A + + ++ + +
Sbjct: 66 ELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW 125
Query: 255 YHQALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSN--NSNREDY 312
+ + + + + + + + + + Y
Sbjct: 126 NSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKY 185
Query: 313 HQALNK 318
+++
Sbjct: 186 MADMDE 191
Score = 25.7 bits (55), Expect = 6.2
Identities = 14/121 (11%), Positives = 30/121 (24%), Gaps = 11/121 (9%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEG 91
+A + + + +P R K+ + +D G
Sbjct: 22 EAAACYGRAITRNPLVAVYY--TNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79
Query: 92 LMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKE 151
YD A+ +L L + ++ + AK ++E
Sbjct: 80 QCQLEMESYDEAIANLQRAY---------SLAKEQRLNFGDDIPSALRIAKKKRWNSIEE 130
Query: 152 D 152
Sbjct: 131 R 131
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Length = 128
Score = 29.5 bits (65), Expect = 0.22
Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 4/108 (3%)
Query: 57 LGLMFKVNNEYDSALKHLT----LCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLI 112
LG ++D+ALKH L + + T N+ +
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR 69
Query: 113 DASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLLKEDDLPVHLKA 160
+ + I + + + KYK A Y + L E P LK
Sbjct: 70 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKK 117
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId:
562]}
Length = 259
Score = 30.2 bits (66), Expect = 0.28
Identities = 18/227 (7%), Positives = 54/227 (23%), Gaps = 23/227 (10%)
Query: 32 KAIKTFQQLLYVDPSYLRAN-EVHLRLGLMFKVNNEYDSALKHLTLCLI----DASPCTF 86
+ +Q+L ++ G+++ A + L +
Sbjct: 17 VILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNY 76
Query: 87 TKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTA----- 141
+ + A + + + ++ Q
Sbjct: 77 LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP 136
Query: 142 -------------KDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIH 188
+ E+ KE K+D + + +
Sbjct: 137 NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKA 196
Query: 189 CLQKSIEADPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNA 235
+ ++ + LG+ + ++G + A ++ +V + N
Sbjct: 197 DATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 243
Score = 25.9 bits (55), Expect = 6.8
Identities = 20/183 (10%), Positives = 52/183 (28%), Gaps = 8/183 (4%)
Query: 137 KYKTAKDSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEA 196
+ + EQ+L L +A + + G +Y + LA + +++
Sbjct: 14 QQEVILARMEQILASRALTDDERAQLLYERGVLY-------DSLGLRALARNDFSQALAI 66
Query: 197 DPKSGQSLYLLGRCFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFSNNSNREDYH 256
P + LG DA +SV + + + +
Sbjct: 67 RPDMPEVFNYLGIYLTQA-GNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ 125
Query: 257 QALNKYRDLGDFLVINNIPTSNNNRQCYNSYSTSIASCKHINNNKDFSNNSNREDYHQAL 316
L + ++ ++ + + ++K+ + E Y +
Sbjct: 126 DDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNI 185
Query: 317 NKY 319
++
Sbjct: 186 SEQ 188
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 290
Score = 28.8 bits (63), Expect = 0.77
Identities = 26/253 (10%), Positives = 63/253 (24%), Gaps = 21/253 (8%)
Query: 32 KAIKTFQQLLYVDPS--YLRANEVHLRLGLMFKVNNEYDSALKHLTLCLIDASPCTFTKL 89
F +L S + A ++ ++ ++++ E + A
Sbjct: 16 VPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDE 75
Query: 90 E-------GLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAK 142
FK +A+ L + + + F ++
Sbjct: 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYA 135
Query: 143 DSYEQLLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQ 202
+ + + ++ + L + A K I++ +
Sbjct: 136 KAIDCYELAGEWYAQDQSV--ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193
Query: 203 SLYLLGR-------CFAAVGKVHDAFLAYRNSVEKSEGNADTWCSIGNKDFS---NNSNR 252
S + L C A A + + AD+ S K N +
Sbjct: 194 SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDS 253
Query: 253 EDYHQALNKYRDL 265
E + ++ +
Sbjct: 254 EQLSEHCKEFDNF 266
>d1g5ga1 f.12.1.1 (A:33-66,A:224-454) Head and neck region of the
ectodomain of NDV fusion glycoprotein {Newcastle disease
virus [TaxId: 11176]}
Length = 265
Score = 28.7 bits (64), Expect = 0.92
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 73 HLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKH 106
+ LID C L+G+ +++ E+D+ +
Sbjct: 224 GEAVSLIDRQSCNILSLDGITLRLSGEFDATYQK 257
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2,
p67-phox) {Human (Homo sapiens) [TaxId: 9606]}
Length = 192
Score = 27.5 bits (60), Expect = 1.6
Identities = 15/145 (10%), Positives = 41/145 (28%), Gaps = 12/145 (8%)
Query: 90 EGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQLL 149
EG++ ++ AL + S + F+I ++ + + A+ ++ + +
Sbjct: 11 EGVLAADKKDWKGALDAFSAVQDPHS-------RICFNIGCMYTILKNMTEAEKAFTRSI 63
Query: 150 KEDDLPVHLKADICRQLGWMYHCIDTLGE-----KSHRETLAIHCLQKSIEADPKSGQSL 204
D + + R I ++ + + L
Sbjct: 64 NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVL 123
Query: 205 YLLGRCFAAVGKVHDAFLAYRNSVE 229
Y + +A + A +
Sbjct: 124 YNIAFMYAKKEEWKKAEEQLALATS 148
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 124
Score = 26.6 bits (59), Expect = 2.2
Identities = 8/47 (17%), Positives = 14/47 (29%), Gaps = 2/47 (4%)
Query: 32 KAIKTFQQLLYVDPSYLRANEVHLRLGLMFKVNNEYDSALKHLTLCL 78
+K + S R E L + EY A +++
Sbjct: 56 LGVKILTDIYKEAES--RRRECLYYLTIGCYKLGEYSMAKRYVDTLF 100
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 25.8 bits (55), Expect = 4.5
Identities = 16/125 (12%), Positives = 32/125 (25%), Gaps = 15/125 (12%)
Query: 88 KLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKLEVRFHIAHLHEVQRKYKTAKDSYEQ 147
K +G D AL+ + + A + Q+ Y+ + +
Sbjct: 7 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL 66
Query: 148 LLKEDDLPVHLKADICRQLGWMYHCIDTLGEKSHRETLAIHCLQKSIEADPKSGQSLYLL 207
G Y E +R A ++ ++ + + Q L
Sbjct: 67 ---------------KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 111
Query: 208 GRCFA 212
A
Sbjct: 112 QNMEA 116
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli
[TaxId: 562]}
Length = 459
Score = 26.0 bits (56), Expect = 7.1
Identities = 18/84 (21%), Positives = 29/84 (34%)
Query: 63 VNNEYDSALKHLTLCLIDASPCTFTKLEGLMFKVNNEYDSALKHLTLCLIDASPCTFTKL 122
N+ Y + + + +L + E+ LK L DA P T +
Sbjct: 144 TNDAYPTGFRIAVYSSLIKLVDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQE 203
Query: 123 EVRFHIAHLHEVQRKYKTAKDSYE 146
F I EV+ +TA+ E
Sbjct: 204 FRAFSILLKEEVKNIQRTAELLLE 227
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.402
Gapped
Lambda K H
0.267 0.0663 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,160,705
Number of extensions: 51848
Number of successful extensions: 178
Number of sequences better than 10.0: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 28
Length of query: 324
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 239
Effective length of database: 1,240,546
Effective search space: 296490494
Effective search space used: 296490494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.3 bits)