BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8162
(326 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P03371|POL_EIAVY Pol polyprotein OS=Equine infectious anemia virus (strain Wyoming)
GN=pol PE=3 SV=1
Length = 1145
Score = 34.7 bits (78), Expect = 0.91, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 234 WDLLKTLNKD--VHFLWCPSHCGIRGNEAVDEAAR 266
W +++ + + V+F W P H GI GN+ DEAA+
Sbjct: 701 WPIIQNIREKEIVYFAWVPGHKGIYGNQLADEAAK 735
>sp|P32542|POL_EIAVC Pol polyprotein OS=Equine infectious anemia virus (isolate CL22)
GN=pol PE=1 SV=1
Length = 1146
Score = 34.3 bits (77), Expect = 1.5, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 234 WDLLKTLNKD--VHFLWCPSHCGIRGNEAVDEAAR 266
W +++ + + V+F W P H GI GN+ DEAA+
Sbjct: 702 WPIIQNIREKEIVYFAWVPGHKGICGNQLADEAAK 736
>sp|P11204|POL_EIAV9 Pol polyprotein OS=Equine infectious anemia virus (isolate 1369)
GN=pol PE=1 SV=1
Length = 1146
Score = 34.3 bits (77), Expect = 1.5, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Query: 234 WDLLKTLNKD--VHFLWCPSHCGIRGNEAVDEAAR 266
W +++ + + V+F W P H GI GN+ DEAA+
Sbjct: 702 WPIIQNIREKEIVYFAWVPGHKGICGNQLADEAAK 736
>sp|A7TQT8|CLU_VANPO Clustered mitochondria protein homolog OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=CLU1 PE=3 SV=1
Length = 1273
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 11/123 (8%)
Query: 119 TSCAYSINDVISSSQLNPVNSIFSAELIAIYL---CLEAITVH----PSDHFLIVSDSRS 171
T C S+N S NPV + F + +YL LE + H PS ++ S S
Sbjct: 220 TPCLNSLN----LSAFNPVPAFFKTKGHILYLHIVTLEGESFHVTAVPSGFYINKSSSNK 275
Query: 172 ALAALSNVSFTNPLVSKVYSCWDLLKTLNKDVHFVLKPSQSALAALSNVSFTNPLVSKVY 231
++ +V S Y+ +DL+ +K H ++ + LAA ++ + PL + ++
Sbjct: 276 FDPSMKDVEGITQQDSIKYNLYDLIALHSKKFHSHVEALEKKLAAYQSIEYVKPLTTFLH 335
Query: 232 SCW 234
W
Sbjct: 336 KPW 338
>sp|Q83GM3|RNH_TROWT Ribonuclease H OS=Tropheryma whipplei (strain Twist) GN=rnhA PE=3
SV=1
Length = 161
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 67/169 (39%), Gaps = 33/169 (19%)
Query: 104 NHTICYTDGSKTMNS--TSCAYSINDVISSSQLNPVNSIFSAELIAIYLCLEAITVHPSD 161
N I TDGS N + A+ +++ S + + AEL A+ L A T H
Sbjct: 4 NEIIAATDGSSLANPGPSGWAWYVDENTWDSGGWDIATNNIAELTAVRELLIA-TRHTDR 62
Query: 162 HFLIVSDSRSALAALSNVSFTNPLVSKVYSCWDLLKTLNKDVHFVLKPSQSALAALSNVS 221
LI+SDS+ + N L VYS W + K D VL
Sbjct: 63 PILILSDSKYVI---------NSLTKWVYS-WKMRKWRKADGKPVLNQE----------- 101
Query: 222 FTNPLVSKVYSCWDLLKTLNKDVHFLWCPSHCGIRGNEAVDEAARNPVN 270
++ ++ S L++ N+++ W +H G NEA D AR N
Sbjct: 102 ----IIQEIDS---LME--NRNIRMSWVNAHTGHPLNEAADSLARQAAN 141
>sp|Q83HK9|RNH_TROW8 Ribonuclease H OS=Tropheryma whipplei (strain TW08/27) GN=rnhA PE=3
SV=1
Length = 161
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 67/169 (39%), Gaps = 33/169 (19%)
Query: 104 NHTICYTDGSKTMNS--TSCAYSINDVISSSQLNPVNSIFSAELIAIYLCLEAITVHPSD 161
N I TDGS N + A+ +++ S + + AEL A+ L A T H
Sbjct: 4 NEIIAATDGSSLANPGPSGWAWYVDENTWDSGGWDIATNNIAELTAVRELLIA-TRHTDR 62
Query: 162 HFLIVSDSRSALAALSNVSFTNPLVSKVYSCWDLLKTLNKDVHFVLKPSQSALAALSNVS 221
LI+SDS+ + N L VYS W + K D VL
Sbjct: 63 PILILSDSKYVI---------NSLTKWVYS-WKMRKWRKADGKPVLNQE----------- 101
Query: 222 FTNPLVSKVYSCWDLLKTLNKDVHFLWCPSHCGIRGNEAVDEAARNPVN 270
++ ++ S L++ N+++ W +H G NEA D AR N
Sbjct: 102 ----IIQEIDS---LME--NRNIRMSWVNAHTGHPLNEAADSLARQAAN 141
>sp|Q3SHS3|SYI_THIDA Isoleucine--tRNA ligase OS=Thiobacillus denitrificans (strain ATCC
25259) GN=ileS PE=3 SV=1
Length = 929
Score = 32.3 bits (72), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 57 APYVRTVPPWSSSSPPVDLSLGKDRKKDTPPVVFQQL 93
APYV P W P++L + K KD PP F++L
Sbjct: 89 APYV---PGWDCHGLPIELQVEKTHGKDIPPAKFREL 122
>sp|O49564|CRK27_ARATH Cysteine-rich receptor-like protein kinase 27 OS=Arabidopsis
thaliana GN=CRK27 PE=3 SV=2
Length = 642
Score = 32.0 bits (71), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 105 HTICYTDGSKTMNSTSCAYSINDVISS-SQLNP-VNSIF----SAELIAIYLC 151
HTICY DG ++TS + ++N +ISS L P +N + + E+ AI LC
Sbjct: 31 HTICYYDGGNFTSNTSYSLNLNRLISSLPDLTPTINGFYNISINGEVNAIALC 83
>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 32.0 bits (71), Expect = 5.9, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 200 NKDVHFVLKPSQSALAALSN--VSFTNPLVSKVYSCWDLLKTLNKDVHFLWCPSHCGIRG 257
+K+ ++ SQ AL +S+ +P+V ++ +L K + V+ W P+H GI G
Sbjct: 1075 SKETVNIVTDSQYALGVISSQPTQSESPIVQQIIE--ELTK--KEQVYLTWVPAHKGIGG 1130
Query: 258 NEAVDE 263
NE +D+
Sbjct: 1131 NEKIDK 1136
>sp|E9Q9A9|OAS2_MOUSE 2'-5'-oligoadenylate synthase 2 OS=Mus musculus GN=Oas2 PE=2 SV=1
Length = 742
Score = 31.6 bits (70), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 238 KTLNKDVHFLWCPSHCGIRGNEAVDEAARNPVNPARLKLCSPDDFKPIAASMVKKEWQNQ 297
KTLN+ V F P++ + G D R ++LC+ D K S+ E Q
Sbjct: 510 KTLNESVEFDVLPAYDAL-GQLRSDFTLRPEAYKDLIELCASQDIKEGEFSICFTELQRN 568
Query: 298 WDIIPITNKLKSIKPLIEHW 317
+ I KLKS+ LI+HW
Sbjct: 569 F-IQTRPTKLKSLLRLIKHW 587
>sp|P04026|POL_IPHA Putative Pol polyprotein OS=Hamster intracisternal a-particle H18
GN=pol PE=3 SV=1
Length = 863
Score = 31.6 bits (70), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 104 NHTICYTDGSKTMNSTSCAYSINDVISSSQLNPVNSIFSAELIAIYLCLEAITVHPSDHF 163
+ T+ YTDGSKT AY + D + S Q N S +++ + LE + P
Sbjct: 410 DGTVVYTDGSKT---GLGAYVVKDRVISKQYNET----SPQVVECLIVLEVLEAFPGP-L 461
Query: 164 LIVSDSRSALAAL 176
IVSDS + A+
Sbjct: 462 NIVSDSSYVVNAV 474
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,475,905
Number of Sequences: 539616
Number of extensions: 5019961
Number of successful extensions: 11392
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 11381
Number of HSP's gapped (non-prelim): 25
length of query: 326
length of database: 191,569,459
effective HSP length: 118
effective length of query: 208
effective length of database: 127,894,771
effective search space: 26602112368
effective search space used: 26602112368
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)