Query psy8162
Match_columns 326
No_of_seqs 266 out of 1220
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 20:09:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8162.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8162hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0328 RnhA Ribonuclease HI [ 99.9 4.8E-26 1E-30 196.7 11.8 139 104-272 2-146 (154)
2 PRK06548 ribonuclease H; Provi 99.9 4.6E-26 9.9E-31 199.1 9.4 139 103-272 3-143 (161)
3 PRK08719 ribonuclease H; Revie 99.9 4.4E-25 9.5E-30 190.5 10.1 133 104-270 3-146 (147)
4 PRK00203 rnhA ribonuclease H; 99.9 2.1E-24 4.6E-29 186.3 9.0 137 105-273 3-144 (150)
5 PF00075 RNase_H: RNase H; In 99.9 6.1E-23 1.3E-27 171.0 9.3 124 104-269 2-131 (132)
6 KOG3752|consensus 99.8 9E-20 2E-24 175.2 12.1 147 103-271 210-365 (371)
7 cd06222 RnaseH RNase H (RNase 99.8 2.7E-18 5.8E-23 138.0 13.4 123 107-269 1-130 (130)
8 PRK13907 rnhA ribonuclease H; 99.7 2.3E-17 4.9E-22 138.2 10.5 120 106-270 2-126 (128)
9 PRK07708 hypothetical protein; 99.6 3.8E-14 8.2E-19 129.9 12.7 127 102-272 70-209 (219)
10 PRK07238 bifunctional RNase H/ 99.5 1.2E-13 2.5E-18 135.5 12.7 122 105-270 2-131 (372)
11 PF13456 RVT_3: Reverse transc 99.1 7E-10 1.5E-14 85.3 8.5 85 140-269 1-85 (87)
12 PF05380 Peptidase_A17: Pao re 89.0 1.6 3.6E-05 37.8 7.1 52 104-157 80-143 (159)
13 PF00336 DNA_pol_viral_C: DNA 81.4 1.8 3.9E-05 39.6 3.7 60 105-173 94-153 (245)
14 COG0296 GlgB 1,4-alpha-glucan 46.6 23 0.00051 37.7 4.1 31 231-261 217-247 (628)
15 KOG1812|consensus 26.7 82 0.0018 31.5 4.1 37 138-174 47-83 (384)
16 cd01285 nucleoside_deaminase N 26.1 2.1E+02 0.0045 22.8 5.8 33 138-170 43-75 (109)
17 PRK10860 tRNA-specific adenosi 22.4 1.9E+02 0.0041 25.6 5.2 29 140-168 60-88 (172)
No 1
>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]
Probab=99.93 E-value=4.8e-26 Score=196.68 Aligned_cols=139 Identities=22% Similarity=0.192 Sum_probs=107.1
Q ss_pred CcEEEEecCCCCCC--CcccEEEEc--CeeE--EeecCCCCchHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHHHHHhh
Q psy8162 104 NHTICYTDGSKTMN--STSCAYSIN--DVIS--SSQLNPVNSIFSAELIAIYLCLEAITVHPSDHFLIVSDSRSALAALS 177 (326)
Q Consensus 104 ~~i~IyTDGS~~~~--~~G~gvv~~--~~~~--~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~ai~~i~ 177 (326)
..++|||||||.+| .+|+|+|+. +... +.... .+|+++||++|++.||+++.+.+...|.|+|||+||+++|+
T Consensus 2 ~~v~if~DGa~~gNpG~gG~g~vl~~~~~~~~~s~~~~-~tTNNraEl~A~i~AL~~l~~~~~~~v~l~tDS~yv~~~i~ 80 (154)
T COG0328 2 KKVEIFTDGACLGNPGPGGWGAVLRYGDGEKELSGGEG-RTTNNRAELRALIEALEALKELGACEVTLYTDSKYVVEGIT 80 (154)
T ss_pred CceEEEecCccCCCCCCceEEEEEEcCCceEEEeeeee-cccChHHHHHHHHHHHHHHHhcCCceEEEEecHHHHHHHHH
Confidence 36899999999976 378998764 2222 22333 78999999999999999999888899999999999999999
Q ss_pred cCCCCCccccccccchhhhhhcccccccccccchhHhhhhccCCcchHHHHHHHHHHHHHHhCCCcEEEEEeeccCCCcc
Q psy8162 178 NVSFTNPLVSKVYSCWDLLKTLNKDVHFVLKPSQSALAALSNVSFTNPLVSKVYSCWDLLKTLNKDVHFLWCPSHCGIRG 257 (326)
Q Consensus 178 ~~~~~~~~~~~i~~~~~~~k~~~~~~~~i~~~~~~~~~a~~n~~~~~~l~~~i~~~~~~l~~~~~~V~~~WVpgH~Gi~G 257 (326)
.|...+....| ++ +..++|+|.+++.+ ++.+..+...|.+.|||||+|.++
T Consensus 81 ~w~~~w~~~~w--------~~-------------~~~~pvkn~dl~~~--------~~~~~~~~~~v~~~WVkgH~g~~~ 131 (154)
T COG0328 81 RWIVKWKKNGW--------KT-------------ADKKPVKNKDLWEE--------LDELLKRHELVFWEWVKGHAGHPE 131 (154)
T ss_pred HHHhhccccCc--------cc-------------cccCccccHHHHHH--------HHHHHhhCCeEEEEEeeCCCCChH
Confidence 66454432222 22 22457888665333 445565667999999999999999
Q ss_pred chHHhHHhcCCCCcc
Q psy8162 258 NEAVDEAARNPVNPA 272 (326)
Q Consensus 258 NE~AD~LAk~Aa~~~ 272 (326)
||.||+||+.|+...
T Consensus 132 NeraD~LA~~~~~~~ 146 (154)
T COG0328 132 NERADQLAREAARAA 146 (154)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998765
No 2
>PRK06548 ribonuclease H; Provisional
Probab=99.93 E-value=4.6e-26 Score=199.11 Aligned_cols=139 Identities=24% Similarity=0.266 Sum_probs=99.6
Q ss_pred CCcEEEEecCCCCCC--CcccEEEEcCeeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHHHHHhhcCC
Q psy8162 103 VNHTICYTDGSKTMN--STSCAYSINDVISSSQLNPVNSIFSAELIAIYLCLEAITVHPSDHFLIVSDSRSALAALSNVS 180 (326)
Q Consensus 103 ~~~i~IyTDGS~~~~--~~G~gvv~~~~~~~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~ai~~i~~~~ 180 (326)
+..++|||||||.++ .+|+|+++.+...........|+++|||+|++.||+.+.. ...+|+|+|||+||+++|+.|.
T Consensus 3 ~~~~~IytDGa~~gnpg~~G~g~~~~~~~~~~g~~~~~TNnraEl~Aii~aL~~~~~-~~~~v~I~TDS~yvi~~i~~W~ 81 (161)
T PRK06548 3 NNEIIAATDGSSLANPGPSGWAWYVDENTWDSGGWDIATNNIAELTAVRELLIATRH-TDRPILILSDSKYVINSLTKWV 81 (161)
T ss_pred CCEEEEEEeeccCCCCCceEEEEEEeCCcEEccCCCCCCHHHHHHHHHHHHHHhhhc-CCceEEEEeChHHHHHHHHHHH
Confidence 346999999999975 4788887754322122234579999999999999986653 3457999999999999999876
Q ss_pred CCCccccccccchhhhhhcccccccccccchhHhhhhccCCcchHHHHHHHHHHHHHHhCCCcEEEEEeeccCCCccchH
Q psy8162 181 FTNPLVSKVYSCWDLLKTLNKDVHFVLKPSQSALAALSNVSFTNPLVSKVYSCWDLLKTLNKDVHFLWCPSHCGIRGNEA 260 (326)
Q Consensus 181 ~~~~~~~~i~~~~~~~k~~~~~~~~i~~~~~~~~~a~~n~~~~~~l~~~i~~~~~~l~~~~~~V~~~WVpgH~Gi~GNE~ 260 (326)
..|. .+. |++ +...+|+|+|+ +++ ++.+... ..|+|.|||||+|++|||.
T Consensus 82 ~~Wk-----~~g---Wk~-------------s~G~pV~N~dL----~~~----l~~l~~~-~~v~~~wVkgHsg~~gNe~ 131 (161)
T PRK06548 82 YSWK-----MRK---WRK-------------ADGKPVLNQEI----IQE----IDSLMEN-RNIRMSWVNAHTGHPLNEA 131 (161)
T ss_pred HHHH-----HCC---Ccc-------------cCCCccccHHH----HHH----HHHHHhc-CceEEEEEecCCCCHHHHH
Confidence 5432 111 222 12345677554 333 3333333 4799999999999999999
Q ss_pred HhHHhcCCCCcc
Q psy8162 261 VDEAARNPVNPA 272 (326)
Q Consensus 261 AD~LAk~Aa~~~ 272 (326)
||+||++|+...
T Consensus 132 aD~LA~~aa~~~ 143 (161)
T PRK06548 132 ADSLARQAANNF 143 (161)
T ss_pred HHHHHHHHHHHh
Confidence 999999998643
No 3
>PRK08719 ribonuclease H; Reviewed
Probab=99.92 E-value=4.4e-25 Score=190.48 Aligned_cols=133 Identities=23% Similarity=0.187 Sum_probs=95.7
Q ss_pred CcEEEEecCCCCCCC-----cccEEEEcC----e--eEEeecCCCCchHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHH
Q psy8162 104 NHTICYTDGSKTMNS-----TSCAYSIND----V--ISSSQLNPVNSIFSAELIAIYLCLEAITVHPSDHFLIVSDSRSA 172 (326)
Q Consensus 104 ~~i~IyTDGS~~~~~-----~G~gvv~~~----~--~~~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~a 172 (326)
..++|||||||.+++ +|+|+++.. . ..+..+....|+++||+.|++.||+.+.+. .+|+|||+||
T Consensus 3 ~~~~iYtDGs~~~n~~~~~~~G~G~vv~~~~~~~~~~~~~~~~~~~Tnn~aEl~A~~~aL~~~~~~----~~i~tDS~yv 78 (147)
T PRK08719 3 ASYSIYIDGAAPNNQHGCVRGGIGLVVYDEAGEIVDEQSITVNRYTDNAELELLALIEALEYARDG----DVIYSDSDYC 78 (147)
T ss_pred ceEEEEEecccCCCCCCCCCcEEEEEEEeCCCCeeEEEEecCCCCccHHHHHHHHHHHHHHHcCCC----CEEEechHHH
Confidence 478999999998653 488987521 1 233345556799999999999999998753 4899999999
Q ss_pred HHHhhcCCCCCccccccccchhhhhhcccccccccccchhHhhhhccCCcchHHHHHHHHHHHHHHhCCCcEEEEEeecc
Q psy8162 173 LAALSNVSFTNPLVSKVYSCWDLLKTLNKDVHFVLKPSQSALAALSNVSFTNPLVSKVYSCWDLLKTLNKDVHFLWCPSH 252 (326)
Q Consensus 173 i~~i~~~~~~~~~~~~i~~~~~~~k~~~~~~~~i~~~~~~~~~a~~n~~~~~~l~~~i~~~~~~l~~~~~~V~~~WVpgH 252 (326)
+++|+.|...|....|. +. ...+++|.|+ +++ ++.+.. ...|+|.|||||
T Consensus 79 i~~i~~~~~~W~~~~w~--------~s-------------~g~~v~n~dl----~~~----i~~l~~-~~~i~~~~VkgH 128 (147)
T PRK08719 79 VRGFNEWLDTWKQKGWR--------KS-------------DKKPVANRDL----WQQ----VDELRA-RKYVEVEKVTAH 128 (147)
T ss_pred HHHHHHHHHHHHhCCcc--------cC-------------CCcccccHHH----HHH----HHHHhC-CCcEEEEEecCC
Confidence 99998765443212221 11 1234556443 333 444544 467999999999
Q ss_pred CCCccchHHhHHhcCCCC
Q psy8162 253 CGIRGNEAVDEAARNPVN 270 (326)
Q Consensus 253 ~Gi~GNE~AD~LAk~Aa~ 270 (326)
+|++|||.||+||++|++
T Consensus 129 ~g~~~Ne~aD~lA~~a~~ 146 (147)
T PRK08719 129 SGIEGNEAADMLAQAAAE 146 (147)
T ss_pred CCChhHHHHHHHHHHHhh
Confidence 999999999999999875
No 4
>PRK00203 rnhA ribonuclease H; Reviewed
Probab=99.91 E-value=2.1e-24 Score=186.30 Aligned_cols=137 Identities=20% Similarity=0.188 Sum_probs=96.4
Q ss_pred cEEEEecCCCCCC--CcccEEEEc--CeeEEe-ecCCCCchHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHHHHHhhcC
Q psy8162 105 HTICYTDGSKTMN--STSCAYSIN--DVISSS-QLNPVNSIFSAELIAIYLCLEAITVHPSDHFLIVSDSRSALAALSNV 179 (326)
Q Consensus 105 ~i~IyTDGS~~~~--~~G~gvv~~--~~~~~~-~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~ai~~i~~~ 179 (326)
.+.|||||||.++ .+|+|+++. +....+ ......|+++|||.|++.||+.+.+ ...|.|+|||+|++++|+.|
T Consensus 3 ~v~iytDGs~~~n~~~~g~g~v~~~~~~~~~~~~~~~~~TN~~aEL~Ai~~AL~~~~~--~~~v~I~tDS~yvi~~i~~w 80 (150)
T PRK00203 3 QVEIYTDGACLGNPGPGGWGAILRYKGHEKELSGGEALTTNNRMELMAAIEALEALKE--PCEVTLYTDSQYVRQGITEW 80 (150)
T ss_pred eEEEEEEecccCCCCceEEEEEEEECCeeEEEecCCCCCcHHHHHHHHHHHHHHHcCC--CCeEEEEECHHHHHHHHHHH
Confidence 5899999999865 378887753 222222 2234678999999999999998865 35799999999999999986
Q ss_pred CCCCccccccccchhhhhhcccccccccccchhHhhhhccCCcchHHHHHHHHHHHHHHhCCCcEEEEEeeccCCCccch
Q psy8162 180 SFTNPLVSKVYSCWDLLKTLNKDVHFVLKPSQSALAALSNVSFTNPLVSKVYSCWDLLKTLNKDVHFLWCPSHCGIRGNE 259 (326)
Q Consensus 180 ~~~~~~~~~i~~~~~~~k~~~~~~~~i~~~~~~~~~a~~n~~~~~~l~~~i~~~~~~l~~~~~~V~~~WVpgH~Gi~GNE 259 (326)
...|....+. + +...+|+|.++ +++| ..+. ....|.|.|||||+|++|||
T Consensus 81 ~~~Wk~~~~~--------~-------------~~g~~v~n~dl----~~~i----~~l~-~~~~v~~~wV~~H~~~~~N~ 130 (150)
T PRK00203 81 IHGWKKNGWK--------T-------------ADKKPVKNVDL----WQRL----DAAL-KRHQIKWHWVKGHAGHPENE 130 (150)
T ss_pred HHHHHHcCCc--------c-------------cCCCccccHHH----HHHH----HHHh-ccCceEEEEecCCCCCHHHH
Confidence 4433211111 1 11234555433 3433 2333 33789999999999999999
Q ss_pred HHhHHhcCCCCccc
Q psy8162 260 AVDEAARNPVNPAR 273 (326)
Q Consensus 260 ~AD~LAk~Aa~~~~ 273 (326)
.||+||++|+..+.
T Consensus 131 ~AD~lA~~a~~~~~ 144 (150)
T PRK00203 131 RCDELARAGAEEAT 144 (150)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999987654
No 5
>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site. This domain is a part of a large family of homologous RNase H enzymes of which the RNase HI protein from Escherichia coli is the best characterised []. Secondary structure predictions for the enzymes from E. coli, yeast, human liver and diverse retroviruses (such as Rous sarcoma virus and the Foamy viruses) supported, in every case, the five beta-strands (1 to 5) and four or five alpha-helices (A, B/C, D, E) that have been identified by crystallography in the RNase H domain of Human immunodeficiency virus 1 (HIV-1) reverse transcriptase and in E. coli RNase H []. Reverse transcriptase (RT) is a modular enzyme carrying polymerase and ribonuclease H (RNase H) activities in separable domains. Reverse transcriptase (RT) converts the single-stranded RNA genome of a retrovirus into a double-stranded DNA copy for integration into the host genome. This process requires ribonuclease H as well as RNA- and DNA-directed DNA polymerase activities. Retroviral RNase H is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. Bacterial RNase H 3.1.26.4 from EC catalyses endonucleolytic cleavage to 5'-phosphomonoester acting on RNA-DNA hybrids. The 3D structure of the RNase H domain from diverse bacteria and retroviruses has been solved [, , ]. All have four beta strands and four to five alpha helices. The E. coli RNase H1 protein binds a single Mg2+ ion cofactor in the active site of the enzyme. The divalent cation is bound by the carboxyl groups of four acidic residues, Asp-10, Glu-48, Asp-70, and Asp-134 []. The first three acidic residues are highly conserved in all bacterial and retroviral RNase H sequences. ; GO: 0003676 nucleic acid binding, 0004523 ribonuclease H activity; PDB: 3LP3_B 2KW4_A 3P1G_A 1RIL_A 2RPI_A 4EQJ_G 4EP2_B 3OTY_P 3U3G_D 2ZQB_D ....
Probab=99.88 E-value=6.1e-23 Score=171.02 Aligned_cols=124 Identities=31% Similarity=0.396 Sum_probs=87.5
Q ss_pred CcEEEEecCCCCCC--CcccEEEEc-CeeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHHHHHhhcCC
Q psy8162 104 NHTICYTDGSKTMN--STSCAYSIN-DVISSSQLNPVNSIFSAELIAIYLCLEAITVHPSDHFLIVSDSRSALAALSNVS 180 (326)
Q Consensus 104 ~~i~IyTDGS~~~~--~~G~gvv~~-~~~~~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~ai~~i~~~~ 180 (326)
+.+.||||||+..+ ..|+|+++. +...++.++ ..+++.|||.||..||+.+ . ..+++|+|||++++..|..+.
T Consensus 2 ~~~~iytDgS~~~~~~~~~~g~v~~~~~~~~~~~~-~~s~~~aEl~Ai~~AL~~~-~--~~~v~I~tDS~~v~~~l~~~~ 77 (132)
T PF00075_consen 2 KAIIIYTDGSCRPNPGKGGAGYVVWGGRNFSFRLG-GQSNNRAELQAIIEALKAL-E--HRKVTIYTDSQYVLNALNKWL 77 (132)
T ss_dssp TSEEEEEEEEECTTTTEEEEEEEEETTEEEEEEEE-SECHHHHHHHHHHHHHHTH-S--TSEEEEEES-HHHHHHHHTHH
T ss_pred CcEEEEEeCCccCCCCceEEEEEEECCeEEEeccc-ccchhhhheehHHHHHHHh-h--cccccccccHHHHHHHHHHhc
Confidence 47899999998743 356776553 333344555 7899999999999999944 3 389999999999999888732
Q ss_pred CC--CccccccccchhhhhhcccccccccccchhHhhhhccCCcchHHHHHHHHHHHHHHhCCCcEEEEEeeccCCC-cc
Q psy8162 181 FT--NPLVSKVYSCWDLLKTLNKDVHFVLKPSQSALAALSNVSFTNPLVSKVYSCWDLLKTLNKDVHFLWCPSHCGI-RG 257 (326)
Q Consensus 181 ~~--~~~~~~i~~~~~~~k~~~~~~~~i~~~~~~~~~a~~n~~~~~~l~~~i~~~~~~l~~~~~~V~~~WVpgH~Gi-~G 257 (326)
.. +.. ... ..+++.+|++ .+ ..+..|.|+|||||+|+ .|
T Consensus 78 ~~~~~~~-~~~---------------------------------~~~i~~~i~~---~~-~~~~~v~~~~V~~H~~~~~~ 119 (132)
T PF00075_consen 78 HGNGWKK-TSN---------------------------------GRPIKNEIWE---LL-SRGIKVRFRWVPGHSGVPQG 119 (132)
T ss_dssp HHTTSBS-CTS---------------------------------SSBHTHHHHH---HH-HHSSEEEEEESSSSSSSHHH
T ss_pred ccccccc-ccc---------------------------------cccchhheee---cc-ccceEEeeeeccCcCCCchh
Confidence 21 100 000 0012333322 23 45899999999999999 69
Q ss_pred chHHhHHhcCCC
Q psy8162 258 NEAVDEAARNPV 269 (326)
Q Consensus 258 NE~AD~LAk~Aa 269 (326)
||.||+|||+|+
T Consensus 120 N~~aD~lAk~a~ 131 (132)
T PF00075_consen 120 NERADRLAKEAA 131 (132)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999999875
No 6
>KOG3752|consensus
Probab=99.81 E-value=9e-20 Score=175.18 Aligned_cols=147 Identities=23% Similarity=0.188 Sum_probs=106.9
Q ss_pred CCcEEEEecCCCCCCC-----cccEEEEcC---eeEEeecC-CCCchHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHHH
Q psy8162 103 VNHTICYTDGSKTMNS-----TSCAYSIND---VISSSQLN-PVNSIFSAELIAIYLCLEAITVHPSDHFLIVSDSRSAL 173 (326)
Q Consensus 103 ~~~i~IyTDGS~~~~~-----~G~gvv~~~---~~~~~~l~-~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~ai 173 (326)
.+..+|||||||..+| +|+||+.++ ...++++. +..++|+|||.||..||+.+.+....+|+|.|||.+++
T Consensus 210 ~~~~vvytDGS~~~ng~~~~~AGyGvywg~~~e~N~s~pv~~g~qtNnrAEl~Av~~ALkka~~~~~~kv~I~TDS~~~i 289 (371)
T KOG3752|consen 210 IEIQVVYTDGSSSGNGRKSSRAGYGVYWGPGHELNVSGPLAGGRQTNNRAELIAAIEALKKARSKNINKVVIRTDSEYFI 289 (371)
T ss_pred ccceEEEecCccccCCCCCCcceeEEeeCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhcCCCcEEEEechHHHH
Confidence 3458999999998753 899998754 35667775 78899999999999999999988788999999999999
Q ss_pred HHhhcCCCCCccccccccchhhhhhcccccccccccchhHhhhhccCCcchHHHHHHHHHHHHHHhCCCcEEEEEeeccC
Q psy8162 174 AALSNVSFTNPLVSKVYSCWDLLKTLNKDVHFVLKPSQSALAALSNVSFTNPLVSKVYSCWDLLKTLNKDVHFLWCPSHC 253 (326)
Q Consensus 174 ~~i~~~~~~~~~~~~i~~~~~~~k~~~~~~~~i~~~~~~~~~a~~n~~~~~~l~~~i~~~~~~l~~~~~~V~~~WVpgH~ 253 (326)
++|+.|...+.-..+ ....+.+.- .+=|.|+++ +.++.++...+ .+..|.+.||+||.
T Consensus 290 ~~l~~wv~~~k~~~~-------k~~~~~~~i---------~~~v~n~~~----~~e~~~l~q~~--~~~~vq~~~V~Gh~ 347 (371)
T KOG3752|consen 290 NSLTLWVQGWKKNGW-------KTSNGSDRI---------CAYVKNQDF----FNELDELEQEI--SNKKVQQEYVGGHS 347 (371)
T ss_pred HHHHHHHhhhccCcc-------ccccCCCcc---------ceeeecchH----HHHHHHHHhhh--ccCceEEEEecCcC
Confidence 999988655421111 111222200 011455554 33332222211 47899999999999
Q ss_pred CCccchHHhHHhcCCCCc
Q psy8162 254 GIRGNEAVDEAARNPVNP 271 (326)
Q Consensus 254 Gi~GNE~AD~LAk~Aa~~ 271 (326)
|+.|||+||.||++++..
T Consensus 348 gi~gne~Ad~lARkgs~~ 365 (371)
T KOG3752|consen 348 GILGNEMADALARKGSTL 365 (371)
T ss_pred CcchHHHHHHHHhhhhhh
Confidence 999999999999998653
No 7
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner. One of the important functions of RNase H is to remove Okazaki fragments during DNA replication. RNase H knockout mice lack mitochondrial DNA replication and die as embryos. The retroviral reverse transcriptase contains an RNase H domain that plays an important role in converting a single stranded retroviral genomic RNA into a dsDNA for integration into host chromosomes. RNase H inhibitors have been explored as an anti-HIV drug target because RNase H inactivation inhibits reverse transcription.
Probab=99.78 E-value=2.7e-18 Score=137.96 Aligned_cols=123 Identities=28% Similarity=0.319 Sum_probs=92.5
Q ss_pred EEEecCCCCCC--CcccEEEEcCee--E---EeecCCCCchHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHHHHHhhcC
Q psy8162 107 ICYTDGSKTMN--STSCAYSINDVI--S---SSQLNPVNSIFSAELIAIYLCLEAITVHPSDHFLIVSDSRSALAALSNV 179 (326)
Q Consensus 107 ~IyTDGS~~~~--~~G~gvv~~~~~--~---~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~ai~~i~~~ 179 (326)
.+|||||...+ ++|+|+++.+.. . ........+++.+|+.|++.||+.+...+..++.|++||+.++..+++.
T Consensus 1 ~~~~Dgs~~~~~~~~g~g~v~~~~~~~~~~~~~~~~~~~s~~~aEl~al~~al~~~~~~~~~~i~i~~Ds~~~~~~~~~~ 80 (130)
T cd06222 1 VIYTDGSCRGNPGPAGAGVVLRDPGGEVLLSGGLLGGNTTNNRAELLALIEALELALELGGKKVNIYTDSQYVINALTGW 80 (130)
T ss_pred CEEecccCCCCCCceEEEEEEEeCCCeEEEeccccCCCCcHHHHHHHHHHHHHHHHHhCCCceEEEEECHHHHHHHhhcc
Confidence 48999999865 688888874321 1 1122256799999999999999999988889999999999999999886
Q ss_pred CCCCccccccccchhhhhhcccccccccccchhHhhhhccCCcchHHHHHHHHHHHHHHhCCCcEEEEEeeccCCCccch
Q psy8162 180 SFTNPLVSKVYSCWDLLKTLNKDVHFVLKPSQSALAALSNVSFTNPLVSKVYSCWDLLKTLNKDVHFLWCPSHCGIRGNE 259 (326)
Q Consensus 180 ~~~~~~~~~i~~~~~~~k~~~~~~~~i~~~~~~~~~a~~n~~~~~~l~~~i~~~~~~l~~~~~~V~~~WVpgH~Gi~GNE 259 (326)
..... ... .++++. +..+...+..++|.|||+|+|+.+|+
T Consensus 81 ~~~~~--~~~----------------------------------~~~~~~----i~~~~~~~~~~~i~~v~~h~~~~~n~ 120 (130)
T cd06222 81 YEGKP--VKN----------------------------------VDLWQR----LLALLKRFHKVRFEWVPGHSGIEGNE 120 (130)
T ss_pred ccCCC--hhh----------------------------------HHHHHH----HHHHHhCCCeEEEEEcCCCCCCcchH
Confidence 53110 011 112222 33334578899999999999999999
Q ss_pred HHhHHhcCCC
Q psy8162 260 AVDEAARNPV 269 (326)
Q Consensus 260 ~AD~LAk~Aa 269 (326)
.||.||++|+
T Consensus 121 ~ad~la~~~~ 130 (130)
T cd06222 121 RADALAKEAA 130 (130)
T ss_pred HHHHHHHhhC
Confidence 9999999874
No 8
>PRK13907 rnhA ribonuclease H; Provisional
Probab=99.73 E-value=2.3e-17 Score=138.17 Aligned_cols=120 Identities=23% Similarity=0.174 Sum_probs=90.1
Q ss_pred EEEEecCCCCCC--CcccEEEEcCeeE--Eee-cCCCCchHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHHHHHhhcCC
Q psy8162 106 TICYTDGSKTMN--STSCAYSINDVIS--SSQ-LNPVNSIFSAELIAIYLCLEAITVHPSDHFLIVSDSRSALAALSNVS 180 (326)
Q Consensus 106 i~IyTDGS~~~~--~~G~gvv~~~~~~--~~~-l~~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~ai~~i~~~~ 180 (326)
++||||||+..+ .+|+|+++.+... ..+ .....+++.||+.|++.||+.+...+...|.|+|||+++++.+++.+
T Consensus 2 ~~iy~DGa~~~~~g~~G~G~vi~~~~~~~~~~~~~~~~tn~~AE~~All~aL~~a~~~g~~~v~i~sDS~~vi~~~~~~~ 81 (128)
T PRK13907 2 IEVYIDGASKGNPGPSGAGVFIKGVQPAVQLSLPLGTMSNHEAEYHALLAALKYCTEHNYNIVSFRTDSQLVERAVEKEY 81 (128)
T ss_pred EEEEEeeCCCCCCCccEEEEEEEECCeeEEEEecccccCCcHHHHHHHHHHHHHHHhCCCCEEEEEechHHHHHHHhHHH
Confidence 689999999864 5899988753211 121 23457899999999999999999988889999999999999998854
Q ss_pred CCCccccccccchhhhhhcccccccccccchhHhhhhccCCcchHHHHHHHHHHHHHHhCCCcEEEEEeeccCCCccchH
Q psy8162 181 FTNPLVSKVYSCWDLLKTLNKDVHFVLKPSQSALAALSNVSFTNPLVSKVYSCWDLLKTLNKDVHFLWCPSHCGIRGNEA 260 (326)
Q Consensus 181 ~~~~~~~~i~~~~~~~k~~~~~~~~i~~~~~~~~~a~~n~~~~~~l~~~i~~~~~~l~~~~~~V~~~WVpgH~Gi~GNE~ 260 (326)
.... . ..+++++ +..+......+.|.|||++ +|+.
T Consensus 82 ~~~~---~----------------------------------~~~l~~~----~~~l~~~f~~~~~~~v~r~----~N~~ 116 (128)
T PRK13907 82 AKNK---M----------------------------------FAPLLEE----ALQYIKSFDLFFIKWIPSS----QNKV 116 (128)
T ss_pred hcCh---h----------------------------------HHHHHHH----HHHHHhcCCceEEEEcCch----hchh
Confidence 2110 0 1123333 3445556778889999995 8999
Q ss_pred HhHHhcCCCC
Q psy8162 261 VDEAARNPVN 270 (326)
Q Consensus 261 AD~LAk~Aa~ 270 (326)
||.||+.|+.
T Consensus 117 Ad~LA~~a~~ 126 (128)
T PRK13907 117 ADELARKAIL 126 (128)
T ss_pred HHHHHHHHHh
Confidence 9999998864
No 9
>PRK07708 hypothetical protein; Validated
Probab=99.56 E-value=3.8e-14 Score=129.95 Aligned_cols=127 Identities=15% Similarity=0.127 Sum_probs=88.8
Q ss_pred CCCcEEEEecCCCCC--CCcccEEEEc--CeeE------EeecCCCCchHHHHHHHHHHHHHHHHhCCCCe--EEEEeCh
Q psy8162 102 YVNHTICYTDGSKTM--NSTSCAYSIN--DVIS------SSQLNPVNSIFSAELIAIYLCLEAITVHPSDH--FLIVSDS 169 (326)
Q Consensus 102 ~~~~i~IyTDGS~~~--~~~G~gvv~~--~~~~------~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~--i~I~tDS 169 (326)
-++.+++|+|||+.. +++|+|+++. .... ...+....+++.||+.|++.||+.+.+.+.+. |.|++||
T Consensus 70 ep~~~~vY~DGs~~~n~g~aG~GvVI~~~~g~~~~~~~~~~~l~~~~TNN~AEy~Ali~aL~~A~e~g~~~~~V~I~~DS 149 (219)
T PRK07708 70 EPHEILVYFDGGFDKETKLAGLGIVIYYKQGNKRYRIRRNAYIEGIYDNNEAEYAALYYAMQELEELGVKHEPVTFRGDS 149 (219)
T ss_pred CCCcEEEEEeeccCCCCCCcEEEEEEEECCCCEEEEEEeeccccccccCcHHHHHHHHHHHHHHHHcCCCcceEEEEecc
Confidence 356799999999874 4588888763 1111 12455567999999999999999999877544 8999999
Q ss_pred HHHHHHhhcCCCCCccccccccchhhhhhcccccccccccchhHhhhhccCCcchHHHHHHHHHHHH-HHhCCCcEEEEE
Q psy8162 170 RSALAALSNVSFTNPLVSKVYSCWDLLKTLNKDVHFVLKPSQSALAALSNVSFTNPLVSKVYSCWDL-LKTLNKDVHFLW 248 (326)
Q Consensus 170 ~~ai~~i~~~~~~~~~~~~i~~~~~~~k~~~~~~~~i~~~~~~~~~a~~n~~~~~~l~~~i~~~~~~-l~~~~~~V~~~W 248 (326)
+.+++.+++.+.... +.++.+++.+.. +......+.|.|
T Consensus 150 qlVi~qi~g~wk~~~----------------------------------------~~l~~y~~~i~~l~~~~~l~~~~~~ 189 (219)
T PRK07708 150 QVVLNQLAGEWPCYD----------------------------------------EHLNHWLDRIEQKLKQLKLTPVYEP 189 (219)
T ss_pred HHHHHHhCCCceeCC----------------------------------------hhHHHHHHHHHHHHhhCCceEEEEE
Confidence 999999987532210 011122222222 233344688899
Q ss_pred eeccCCCccchHHhHHhcCCCCcc
Q psy8162 249 CPSHCGIRGNEAVDEAARNPVNPA 272 (326)
Q Consensus 249 VpgH~Gi~GNE~AD~LAk~Aa~~~ 272 (326)
||.. .|+.||+||+.|+...
T Consensus 190 VpR~----~N~~AD~LAk~Al~~~ 209 (219)
T PRK07708 190 ISRK----QNKEADQLATQALEGT 209 (219)
T ss_pred CCch----hhhHHHHHHHHHHhcC
Confidence 9874 6999999999999743
No 10
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional
Probab=99.51 E-value=1.2e-13 Score=135.50 Aligned_cols=122 Identities=16% Similarity=0.141 Sum_probs=89.8
Q ss_pred cEEEEecCCCCCC--CcccEEEEcCe--e---EEe-ecCCCCchHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHHHHHh
Q psy8162 105 HTICYTDGSKTMN--STSCAYSINDV--I---SSS-QLNPVNSIFSAELIAIYLCLEAITVHPSDHFLIVSDSRSALAAL 176 (326)
Q Consensus 105 ~i~IyTDGS~~~~--~~G~gvv~~~~--~---~~~-~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~ai~~i 176 (326)
.++||||||+.++ .+|+|+++.+. . ..+ .....++++.||+.|++.||+.+.+.+.+.|.|++||+++++.+
T Consensus 2 ~~~i~~DGa~~~n~g~aG~G~vi~~~~~~~~~~~~~~~~~~~tnn~AE~~All~gL~~a~~~g~~~v~i~~DS~lvi~~i 81 (372)
T PRK07238 2 KVVVEADGGSRGNPGPAGYGAVVWDADRGEVLAERAEAIGRATNNVAEYRGLIAGLEAAAELGATEVEVRMDSKLVVEQM 81 (372)
T ss_pred eEEEEecCCCCCCCCceEEEEEEEeCCCCcEEEEeecccCCCCchHHHHHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHh
Confidence 4789999999976 47899887431 1 122 22336788999999999999999998888999999999999999
Q ss_pred hcCCCCCccccccccchhhhhhcccccccccccchhHhhhhccCCcchHHHHHHHHHHHHHHhCCCcEEEEEeeccCCCc
Q psy8162 177 SNVSFTNPLVSKVYSCWDLLKTLNKDVHFVLKPSQSALAALSNVSFTNPLVSKVYSCWDLLKTLNKDVHFLWCPSHCGIR 256 (326)
Q Consensus 177 ~~~~~~~~~~~~i~~~~~~~k~~~~~~~~i~~~~~~~~~a~~n~~~~~~l~~~i~~~~~~l~~~~~~V~~~WVpgH~Gi~ 256 (326)
++.+... | +-+..++..+..+......++|.|||+ .
T Consensus 82 ~~~~~~~-----------------------------------~-----~~l~~~~~~i~~l~~~f~~~~i~~v~r----~ 117 (372)
T PRK07238 82 SGRWKVK-----------------------------------H-----PDMKPLAAQARELASQFGRVTYTWIPR----A 117 (372)
T ss_pred CCCCccC-----------------------------------C-----hHHHHHHHHHHHHHhcCCceEEEECCc----h
Confidence 7643210 0 001112222444556778899999998 5
Q ss_pred cchHHhHHhcCCCC
Q psy8162 257 GNEAVDEAARNPVN 270 (326)
Q Consensus 257 GNE~AD~LAk~Aa~ 270 (326)
+|+.||.||+.|+.
T Consensus 118 ~N~~AD~LA~~a~~ 131 (372)
T PRK07238 118 RNAHADRLANEAMD 131 (372)
T ss_pred hhhHHHHHHHHHHH
Confidence 79999999999864
No 11
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B.
Probab=99.07 E-value=7e-10 Score=85.27 Aligned_cols=85 Identities=20% Similarity=0.211 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHHHHHhhcCCCCCccccccccchhhhhhcccccccccccchhHhhhhcc
Q psy8162 140 IFSAELIAIYLCLEAITVHPSDHFLIVSDSRSALAALSNVSFTNPLVSKVYSCWDLLKTLNKDVHFVLKPSQSALAALSN 219 (326)
Q Consensus 140 v~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~ai~~i~~~~~~~~~~~~i~~~~~~~k~~~~~~~~i~~~~~~~~~a~~n 219 (326)
+..||+.|++.||+.+.+.+.++|.|+|||+.+++.|++...... .+
T Consensus 1 ~~~aE~~al~~al~~a~~~g~~~i~v~sDs~~vv~~i~~~~~~~~---~~------------------------------ 47 (87)
T PF13456_consen 1 PLEAEALALLEALQLAWELGIRKIIVESDSQLVVDAINGRSSSRS---EL------------------------------ 47 (87)
T ss_dssp HHHHHHHHHHHHHHHHHCCT-SCEEEEES-HHHHHHHTTSS---S---CC------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHCCCCEEEEEecCccccccccccccccc---cc------------------------------
Confidence 468999999999999999999999999999999999988643221 11
Q ss_pred CCcchHHHHHHHHHHHHHHhCCCcEEEEEeeccCCCccchHHhHHhcCCC
Q psy8162 220 VSFTNPLVSKVYSCWDLLKTLNKDVHFLWCPSHCGIRGNEAVDEAARNPV 269 (326)
Q Consensus 220 ~~~~~~l~~~i~~~~~~l~~~~~~V~~~WVpgH~Gi~GNE~AD~LAk~Aa 269 (326)
..++++ +..+......+.|.|||. .+|..||.|||.|.
T Consensus 48 ----~~~~~~----i~~~~~~~~~~~~~~i~r----~~N~~A~~LA~~a~ 85 (87)
T PF13456_consen 48 ----RPLIQD----IRSLLDRFWNVSVSHIPR----EQNKVADALAKFAL 85 (87)
T ss_dssp ----HHHHHH----HHHHHCCCSCEEEEE--G----GGSHHHHHHHHHHH
T ss_pred ----cccchh----hhhhhccccceEEEEECh----HHhHHHHHHHHHHh
Confidence 112333 444566789999999998 68999999999764
No 12
>PF05380 Peptidase_A17: Pao retrotransposon peptidase ; InterPro: IPR008042 This signature identifies members of the Pao retrotransposon family.
Probab=88.97 E-value=1.6 Score=37.79 Aligned_cols=52 Identities=17% Similarity=0.168 Sum_probs=32.9
Q ss_pred CcEEEEecCCCCCCCcccEEEEc---CeeEE-------eecC--CCCchHHHHHHHHHHHHHHHHh
Q psy8162 104 NHTICYTDGSKTMNSTSCAYSIN---DVISS-------SQLN--PVNSIFSAELIAIYLCLEAITV 157 (326)
Q Consensus 104 ~~i~IyTDGS~~~~~~G~gvv~~---~~~~~-------~~l~--~~~sv~~AEl~AI~~AL~~~~~ 157 (326)
..+++|+|+|.. +.|+.++.. +.... .++. ...|+-+.||.|++.|.+.+..
T Consensus 80 ~~L~~F~DAS~~--aygavvYlr~~~~~~~~~~ll~aKsrv~P~k~~tIPRlEL~a~~l~~~l~~~ 143 (159)
T PF05380_consen 80 VELHVFCDASES--AYGAVVYLRSYSDGSVQVRLLFAKSRVAPLKTVTIPRLELLAALLGVRLANT 143 (159)
T ss_pred eeeeEeeccccc--ceeeEeEeeeccCCceeeeeeeecccccCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 368999999943 344444432 11111 1221 2348999999999999998763
No 13
>PF00336 DNA_pol_viral_C: DNA polymerase (viral) C-terminal domain; InterPro: IPR001462 This domain is at the C terminus of hepatitis B-type viruses P proteins and represents a functional domain that controls the RNase H activities of the protein. The domain is always associated with IPR000201 from INTERPRO and .; GO: 0004523 ribonuclease H activity
Probab=81.36 E-value=1.8 Score=39.61 Aligned_cols=60 Identities=20% Similarity=0.181 Sum_probs=38.8
Q ss_pred cEEEEecCCCCCCCcccEEEEcCeeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHHH
Q psy8162 105 HTICYTDGSKTMNSTSCAYSINDVISSSQLNPVNSIFSAELIAIYLCLEAITVHPSDHFLIVSDSRSAL 173 (326)
Q Consensus 105 ~i~IyTDGS~~~~~~G~gvv~~~~~~~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~ai 173 (326)
.-.||+|+.- .|+|+.+......+.....-.++.|||.|...|.-+.. .+ .|.|||..|+
T Consensus 94 lc~VfaDATp----Tgwgi~i~~~~~~~Tfs~~l~IhtaELlaaClAr~~~~----~r-~l~tDnt~Vl 153 (245)
T PF00336_consen 94 LCQVFADATP----TGWGISITGQRMRGTFSKPLPIHTAELLAACLARLMSG----AR-CLGTDNTVVL 153 (245)
T ss_pred CCceeccCCC----CcceeeecCceeeeeecccccchHHHHHHHHHHHhccC----Cc-EEeecCcEEE
Confidence 4568888763 56666554433333333345788999999988766543 23 4999998765
No 14
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=46.61 E-value=23 Score=37.68 Aligned_cols=31 Identities=23% Similarity=0.262 Sum_probs=26.7
Q ss_pred HHHHHHHHhCCCcEEEEEeeccCCCccchHH
Q psy8162 231 YSCWDLLKTLNKDVHFLWCPSHCGIRGNEAV 261 (326)
Q Consensus 231 ~~~~~~l~~~~~~V~~~WVpgH~Gi~GNE~A 261 (326)
...++..++.|..|-+-|||+|.+..||-++
T Consensus 217 k~fVD~aH~~GIgViLD~V~~HF~~d~~~L~ 247 (628)
T COG0296 217 KALVDAAHQAGIGVILDWVPNHFPPDGNYLA 247 (628)
T ss_pred HHHHHHHHHcCCEEEEEecCCcCCCCcchhh
Confidence 3448888999999999999999999888765
No 15
>KOG1812|consensus
Probab=26.75 E-value=82 Score=31.48 Aligned_cols=37 Identities=22% Similarity=0.188 Sum_probs=32.0
Q ss_pred CchHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHHHH
Q psy8162 138 NSIFSAELIAIYLCLEAITVHPSDHFLIVSDSRSALA 174 (326)
Q Consensus 138 ~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~ai~ 174 (326)
.+...||++|+..+|..+.+.+...+.+++|+.....
T Consensus 47 ~~~~~ae~~al~~~l~ea~~~~~~~~~~~~d~~~~~~ 83 (384)
T KOG1812|consen 47 ITPLEAELMALKRGLTEALELGLNHIVIYCDDELIYE 83 (384)
T ss_pred cchhhHHHHHHhhccHHHHhhccccceEecccHHHHH
Confidence 5678999999999999999998999999999655444
No 16
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=26.14 E-value=2.1e+02 Score=22.79 Aligned_cols=33 Identities=12% Similarity=0.050 Sum_probs=23.4
Q ss_pred CchHHHHHHHHHHHHHHHHhCCCCeEEEEeChH
Q psy8162 138 NSIFSAELIAIYLCLEAITVHPSDHFLIVSDSR 170 (326)
Q Consensus 138 ~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~ 170 (326)
.....||..||..+.+..........++|+.-.
T Consensus 43 ~~~~HAE~~ai~~~~~~~~~~~~~~~~ly~t~E 75 (109)
T cd01285 43 DPTAHAEIVAIRNAARRLGSYLLSGCTLYTTLE 75 (109)
T ss_pred CCcccHHHHHHHHHHHHhCCCccCCeEEEEeCC
Confidence 356789999999998875443345677777544
No 17
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=22.38 E-value=1.9e+02 Score=25.57 Aligned_cols=29 Identities=10% Similarity=-0.114 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Q psy8162 140 IFSAELIAIYLCLEAITVHPSDHFLIVSD 168 (326)
Q Consensus 140 v~~AEl~AI~~AL~~~~~~~~~~i~I~tD 168 (326)
...||+.||..|.+.+........++|+-
T Consensus 60 ~~HAEi~Ai~~a~~~~~~~~l~g~tlY~T 88 (172)
T PRK10860 60 TAHAEIMALRQGGLVLQNYRLLDATLYVT 88 (172)
T ss_pred ccCHHHHHHHHHHHhcCCCCcCCcEEEee
Confidence 45799999999887654333345566654
Done!