Query psy8162
Match_columns 326
No_of_seqs 266 out of 1220
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 20:09:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8162.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8162hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 99.9 4.6E-27 1.6E-31 201.8 5.8 140 103-272 5-152 (154)
2 3qio_A GAG-POL polyprotein; RN 99.9 2.7E-26 9.3E-31 197.1 10.0 136 102-271 9-147 (150)
3 3h08_A RNH (ribonuclease H); R 99.9 2.2E-26 7.5E-31 195.6 1.6 135 104-271 3-144 (146)
4 1jl1_A Ribonuclease HI; RNAse 99.9 2.7E-25 9.3E-30 191.3 3.2 138 104-274 3-146 (155)
5 3p1g_A Xenotropic murine leuke 99.9 1E-24 3.5E-29 190.3 6.6 126 105-273 23-158 (165)
6 2lsn_A Reverse transcriptase; 99.9 6.1E-25 2.1E-29 191.7 5.1 137 104-270 6-162 (165)
7 2e4l_A Ribonuclease HI, RNAse 99.9 1.1E-24 3.7E-29 188.3 4.4 135 104-271 5-145 (158)
8 1ril_A Ribonuclease H; hydrola 99.9 1.8E-24 6.1E-29 188.5 2.0 138 104-273 7-150 (166)
9 2kq2_A Ribonuclease H-related 99.9 1.2E-24 4.2E-29 185.9 0.5 128 102-273 3-139 (147)
10 3u3g_D Ribonuclease H, RNAse H 99.8 1.3E-20 4.5E-25 156.8 9.3 123 104-271 2-137 (140)
11 3hst_B Protein RV2228C/MT2287; 99.8 1.3E-20 4.5E-25 157.6 9.3 124 105-272 3-134 (141)
12 1mu2_A HIV-2 RT; HIV-2 reverse 99.8 1.7E-20 5.8E-25 191.0 11.2 119 103-269 434-555 (555)
13 2zd1_A Reverse transcriptase/r 99.8 2.3E-20 7.9E-25 190.1 9.8 118 103-268 437-557 (557)
14 2ehg_A Ribonuclease HI; RNAse 99.8 2.3E-19 7.9E-24 152.4 8.8 122 106-272 2-135 (149)
15 1zbf_A Ribonuclease H-related 99.5 5.5E-15 1.9E-19 125.7 5.5 126 103-263 9-139 (142)
16 4htu_A Ribonuclease H, RNAse H 99.4 5.2E-13 1.8E-17 112.3 8.6 75 103-179 3-83 (134)
17 1rw3_A POL polyprotein; RNA an 81.5 0.37 1.3E-05 47.1 0.7 73 103-179 344-428 (455)
18 2zd1_B P51 RT; P51/P66, hetero 64.9 11 0.00037 36.5 6.5 78 103-183 322-410 (428)
19 2nx8_A TRNA-specific adenosine 27.2 66 0.0023 27.3 4.5 51 118-168 37-91 (179)
20 1wkq_A Guanine deaminase; doma 23.7 83 0.0028 26.3 4.4 52 117-168 32-87 (164)
21 2fr5_A Cytidine deaminase; tet 23.6 81 0.0028 25.9 4.2 51 118-169 37-91 (146)
22 2zd1_A Reverse transcriptase/r 23.2 1.6E+02 0.0056 28.9 7.2 75 103-180 324-409 (557)
23 2b3j_A TRNA adenosine deaminas 23.1 1.1E+02 0.0037 25.2 5.0 27 141-167 55-81 (159)
24 2a8n_A Cytidine and deoxycytid 22.5 70 0.0024 25.8 3.6 27 141-167 52-78 (144)
25 1wwr_A TRNA adenosine deaminas 21.5 90 0.0031 26.2 4.2 27 141-167 71-97 (171)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.93 E-value=4.6e-27 Score=201.81 Aligned_cols=140 Identities=19% Similarity=0.205 Sum_probs=101.9
Q ss_pred CCcEEEEecCCCCCCC-----cccEEEEcCe---eEEeecCCCCchHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHHHH
Q psy8162 103 VNHTICYTDGSKTMNS-----TSCAYSINDV---ISSSQLNPVNSIFSAELIAIYLCLEAITVHPSDHFLIVSDSRSALA 174 (326)
Q Consensus 103 ~~~i~IyTDGS~~~~~-----~G~gvv~~~~---~~~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~ai~ 174 (326)
.+.++|||||||.+++ +|+|+++.+. ..+..+.+.+|++.||+.|++.||+.+...+..+|.|+|||++|++
T Consensus 5 ~~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~vi~ 84 (154)
T 2qkb_A 5 GDFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTIN 84 (154)
T ss_dssp TTEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHHH
T ss_pred CCeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHHHh
Confidence 4678999999998653 6888887531 2345666678999999999999999999877889999999999999
Q ss_pred HhhcCCCCCccccccccchhhhhhcccccccccccchhHhhhhccCCcchHHHHHHHHHHHHHHhCCCcEEEEEeeccCC
Q psy8162 175 ALSNVSFTNPLVSKVYSCWDLLKTLNKDVHFVLKPSQSALAALSNVSFTNPLVSKVYSCWDLLKTLNKDVHFLWCPSHCG 254 (326)
Q Consensus 175 ~i~~~~~~~~~~~~i~~~~~~~k~~~~~~~~i~~~~~~~~~a~~n~~~~~~l~~~i~~~~~~l~~~~~~V~~~WVpgH~G 254 (326)
+|+.|...|.... |++.+ ..+++|. +++++| ..+.. +..|.|.|||||+|
T Consensus 85 ~i~~~~~~w~~~~--------w~~~~-------------~~~~~n~----~l~~~i----~~l~~-~~~v~~~~V~~H~g 134 (154)
T 2qkb_A 85 GITNWVQGWKKNG--------WKTSA-------------GKEVINK----EDFVAL----ERLTQ-GMDIQWMHVPGHSG 134 (154)
T ss_dssp HHHTHHHHHHTTT--------SBCTT-------------SSBCTTH----HHHHHH----HHHHT-TCEEEEEECCTTSS
T ss_pred hhhhhHHHHHhcc--------ccccC-------------CCccccH----HHHHHH----HHHHc-CCceEEEEccCCCC
Confidence 9998643211001 11100 1123332 344443 33332 56799999999999
Q ss_pred CccchHHhHHhcCCCCcc
Q psy8162 255 IRGNEAVDEAARNPVNPA 272 (326)
Q Consensus 255 i~GNE~AD~LAk~Aa~~~ 272 (326)
++|||.||+||++|+..+
T Consensus 135 ~~~N~~AD~LA~~a~~~~ 152 (154)
T 2qkb_A 135 FIGNEEADRLAREGAKQS 152 (154)
T ss_dssp CHHHHHHHHHHHHHHTCC
T ss_pred CHhHHHHHHHHHHHHHhc
Confidence 999999999999998754
No 2
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.93 E-value=2.7e-26 Score=197.14 Aligned_cols=136 Identities=27% Similarity=0.330 Sum_probs=95.8
Q ss_pred CCCcEEEEecCCCCCCC--cccEEEEcC-eeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHHHHHhhc
Q psy8162 102 YVNHTICYTDGSKTMNS--TSCAYSIND-VISSSQLNPVNSIFSAELIAIYLCLEAITVHPSDHFLIVSDSRSALAALSN 178 (326)
Q Consensus 102 ~~~~i~IyTDGS~~~~~--~G~gvv~~~-~~~~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~ai~~i~~ 178 (326)
..+.+.|||||||.+++ +|+|+++.+ ......+ ..+|+++||++|++.||+.+ ..+|+|+|||++|+++|+.
T Consensus 9 ~~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~Tnn~aEl~A~i~AL~~~----~~~v~i~tDS~~v~~~i~~ 83 (150)
T 3qio_A 9 IVGAETFYVDGAANRETKLGKAGYVTNRGRQKVVTL-TDTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIITQ 83 (150)
T ss_dssp CTTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHHS----CSEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEEccCCCCCCCCeEEEEEEEcCCEEEEeC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeCcHHHHHHHHH
Confidence 45689999999998653 788887744 2223343 46899999999999999985 3789999999999999998
Q ss_pred CCCCCccccccccchhhhhhcccccccccccchhHhhhhccCCcchHHHHHHHHHHHHHHhCCCcEEEEEeeccCCCccc
Q psy8162 179 VSFTNPLVSKVYSCWDLLKTLNKDVHFVLKPSQSALAALSNVSFTNPLVSKVYSCWDLLKTLNKDVHFLWCPSHCGIRGN 258 (326)
Q Consensus 179 ~~~~~~~~~~i~~~~~~~k~~~~~~~~i~~~~~~~~~a~~n~~~~~~l~~~i~~~~~~l~~~~~~V~~~WVpgH~Gi~GN 258 (326)
|...|....| ++ +...+++|.+ +++++ ..+...+..|.|.|||||+|++||
T Consensus 84 w~~~W~~~gw--------~~-------------~~g~~v~n~~----l~~~l----~~~l~~~~~v~~~wV~gH~g~~~N 134 (150)
T 3qio_A 84 WIHNWKKRGW--------KT-------------ADKKPVKNVD----LVNQI----IEQLIKKEKVYLAWVPAHKGIGGN 134 (150)
T ss_dssp HHHHHCC---------------------------------CHH----HHHHH----HHHHTTCSEEEEEECCTTSCCHHH
T ss_pred HHHHHhhcCc--------Cc-------------CcCcccccHH----HHHHH----HHHHhhcCceEEEEccCcCCChhH
Confidence 6433211111 21 1123455643 34433 222236789999999999999999
Q ss_pred hHHhHHhcCCCCc
Q psy8162 259 EAVDEAARNPVNP 271 (326)
Q Consensus 259 E~AD~LAk~Aa~~ 271 (326)
|.||+||++|+..
T Consensus 135 e~AD~LA~~a~~~ 147 (150)
T 3qio_A 135 EQVDKLVSAGIRK 147 (150)
T ss_dssp HHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999875
No 3
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.92 E-value=2.2e-26 Score=195.60 Aligned_cols=135 Identities=24% Similarity=0.204 Sum_probs=93.1
Q ss_pred CcEEEEecCCCCCCC--cccEEEEc--CeeE--EeecCCCCchHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHHHHHhh
Q psy8162 104 NHTICYTDGSKTMNS--TSCAYSIN--DVIS--SSQLNPVNSIFSAELIAIYLCLEAITVHPSDHFLIVSDSRSALAALS 177 (326)
Q Consensus 104 ~~i~IyTDGS~~~~~--~G~gvv~~--~~~~--~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~ai~~i~ 177 (326)
+.++|||||||.+++ +|+|+++. +... +..+ ..+|+++||+.|++.||+.+.+ ..+|+|+|||++|+++|+
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i~ 79 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYD-PATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNAMN 79 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHHHH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCC-CCCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHHHH
Confidence 478999999998763 78888763 2221 2222 3578999999999999999876 478999999999999998
Q ss_pred c-CCCCCccccccccchhhhhhcccccccccccchhHhhhhccCCcchHHHHHHHHHHHHHHhCCCcEEEEEeeccCCCc
Q psy8162 178 N-VSFTNPLVSKVYSCWDLLKTLNKDVHFVLKPSQSALAALSNVSFTNPLVSKVYSCWDLLKTLNKDVHFLWCPSHCGIR 256 (326)
Q Consensus 178 ~-~~~~~~~~~~i~~~~~~~k~~~~~~~~i~~~~~~~~~a~~n~~~~~~l~~~i~~~~~~l~~~~~~V~~~WVpgH~Gi~ 256 (326)
. |...| ..+. |++ +...+++|. +++++|.+ +.. ...|.|.|||||+|++
T Consensus 80 ~~w~~~W-----~~~~---w~~-------------~~~~~v~n~----~l~~~~~~----~~~-~~~v~~~~V~gH~g~~ 129 (146)
T 3h08_A 80 EGWLKRW-----VKNG---WKT-------------AAKKPVENI----DLWQEILK----LTT-LHRVTFHKVKGHSDNP 129 (146)
T ss_dssp SSHHHHH-----HHTT---CC-----------------CCCTTH----HHHHHHHH----HHH-HSEEEEEECCC-CCSH
T ss_pred HHHHHHH-----HHCC---Ccc-------------CCCCCcCCH----HHHHHHHH----HHh-hCceEEEEcCCcCCcH
Confidence 8 43221 1111 111 011234443 34444422 222 2479999999999999
Q ss_pred cchHHhHHhcCCCCc
Q psy8162 257 GNEAVDEAARNPVNP 271 (326)
Q Consensus 257 GNE~AD~LAk~Aa~~ 271 (326)
|||.||+||++|+..
T Consensus 130 ~N~~AD~LA~~a~~~ 144 (146)
T 3h08_A 130 YNSRADELARLAIKE 144 (146)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999999988753
No 4
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.90 E-value=2.7e-25 Score=191.32 Aligned_cols=138 Identities=22% Similarity=0.241 Sum_probs=97.1
Q ss_pred CcEEEEecCCCCCCC--cccEEEEc--CeeE--EeecCCCCchHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHHHHHhh
Q psy8162 104 NHTICYTDGSKTMNS--TSCAYSIN--DVIS--SSQLNPVNSIFSAELIAIYLCLEAITVHPSDHFLIVSDSRSALAALS 177 (326)
Q Consensus 104 ~~i~IyTDGS~~~~~--~G~gvv~~--~~~~--~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~ai~~i~ 177 (326)
..+.|||||||.+++ +|+|+++. +... +..+ ..+|+++||+.|++.||+.+.+. .+|.|+|||++|+++|+
T Consensus 3 ~~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~~~~--~~v~I~tDS~~vi~~i~ 79 (155)
T 1jl1_A 3 KQVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKEH--AEVILSTDSQYVRQGIT 79 (155)
T ss_dssp CCEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCCSC--CEEEEEECCHHHHHHHH
T ss_pred ceEEEEEccccCCCCCceEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHhCcC--CcEEEEeCHHHHHHHHH
Confidence 368999999998653 78898763 2221 2223 35789999999999999998763 78999999999999999
Q ss_pred cCCCCCccccccccchhhhhhcccccccccccchhHhhhhccCCcchHHHHHHHHHHHHHHhCCCcEEEEEeeccCCCcc
Q psy8162 178 NVSFTNPLVSKVYSCWDLLKTLNKDVHFVLKPSQSALAALSNVSFTNPLVSKVYSCWDLLKTLNKDVHFLWCPSHCGIRG 257 (326)
Q Consensus 178 ~~~~~~~~~~~i~~~~~~~k~~~~~~~~i~~~~~~~~~a~~n~~~~~~l~~~i~~~~~~l~~~~~~V~~~WVpgH~Gi~G 257 (326)
.|...| ..+. |++. ...+++|. +++++| ..+. ....|.|.|||||+|++|
T Consensus 80 ~w~~~W-----~~n~---~~~~-------------~g~~v~n~----~l~~~i----~~l~-~~~~v~~~wV~gH~g~~~ 129 (155)
T 1jl1_A 80 QWIHNW-----KKRG---WKTA-------------DKKPVKNV----DLWQRL----DAAL-GQHQIKWEWVKGHAGHPE 129 (155)
T ss_dssp TTHHHH-----HHTT---TBCT-------------TSCBCTTH----HHHHHH----HHHT-TTCEEEEEECCSSTTCHH
T ss_pred HHHHHH-----hhcc---cccc-------------cCCccCCH----HHHHHH----HHHH-ccCceEEEEcCCCCCCHH
Confidence 864322 1110 1110 01223442 334443 3333 246899999999999999
Q ss_pred chHHhHHhcCCCCcccc
Q psy8162 258 NEAVDEAARNPVNPARL 274 (326)
Q Consensus 258 NE~AD~LAk~Aa~~~~~ 274 (326)
||.||+||++|+..+..
T Consensus 130 Ne~AD~LA~~a~~~~~~ 146 (155)
T 1jl1_A 130 NERADELARAAAMNPTL 146 (155)
T ss_dssp HHHHHHHHHHHHHSCCB
T ss_pred HHHHHHHHHHHHhccch
Confidence 99999999999987643
No 5
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.90 E-value=1e-24 Score=190.28 Aligned_cols=126 Identities=26% Similarity=0.333 Sum_probs=92.7
Q ss_pred cEEEEecCCCCC--CCcccEEEEc--Cee-EEeecCCCCchHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHHHHHhhcC
Q psy8162 105 HTICYTDGSKTM--NSTSCAYSIN--DVI-SSSQLNPVNSIFSAELIAIYLCLEAITVHPSDHFLIVSDSRSALAALSNV 179 (326)
Q Consensus 105 ~i~IyTDGS~~~--~~~G~gvv~~--~~~-~~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~ai~~i~~~ 179 (326)
.+.|||||||.+ +.+|+|+++. +.. ....+...+|+++||++|++.||+.+ ....|.|+|||+||+++| |
T Consensus 23 ~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~tDS~~vi~~i--w 97 (165)
T 3p1g_A 23 DYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA---EGKKLNVYTDSRYAFATA--H 97 (165)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT---BTSEEEEEECCHHHHHHH--H
T ss_pred CEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc---cCceEEEEEchHHHHhhh--h
Confidence 589999999984 3477887652 222 22245667899999999999999998 257899999999999998 3
Q ss_pred CCCCccccccccchhhhhhcccccccccccchhHhhhhccCCcchHHHHHHHHHHHHHHhCCCcEEEEEeeccCC-----
Q psy8162 180 SFTNPLVSKVYSCWDLLKTLNKDVHFVLKPSQSALAALSNVSFTNPLVSKVYSCWDLLKTLNKDVHFLWCPSHCG----- 254 (326)
Q Consensus 180 ~~~~~~~~~i~~~~~~~k~~~~~~~~i~~~~~~~~~a~~n~~~~~~l~~~i~~~~~~l~~~~~~V~~~WVpgH~G----- 254 (326)
.... ++ +++|.+ +++++ .+.+ ..+..|+|+|||||+|
T Consensus 98 ~~~~--g~----------------------------~v~n~d----l~~~l---~~~l-~~~~~v~~~wVkgH~g~~~~~ 139 (165)
T 3p1g_A 98 VHSE--GR----------------------------EIKNKN----EILAL---LKAL-FLPKRLSIIHCPGHQKGNSAE 139 (165)
T ss_dssp SCCC--SC----------------------------CCSSHH----HHHHH---HHHT-TSBSEEEEEECCSSCCSCSHH
T ss_pred cccC--CC----------------------------cccCHH----HHHHH---HHHH-hcCCceEEEEecCCCCCCcCc
Confidence 2211 11 234433 23332 1222 2578999999999999
Q ss_pred CccchHHhHHhcCCCCccc
Q psy8162 255 IRGNEAVDEAARNPVNPAR 273 (326)
Q Consensus 255 i~GNE~AD~LAk~Aa~~~~ 273 (326)
++|||.||+||++|+..+.
T Consensus 140 ~~gNe~AD~LA~~aa~~~~ 158 (165)
T 3p1g_A 140 ARGNRMADQAAREAAMKAV 158 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCC
Confidence 9999999999999987654
No 6
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.90 E-value=6.1e-25 Score=191.74 Aligned_cols=137 Identities=15% Similarity=0.114 Sum_probs=95.8
Q ss_pred CcEEEEecCCCCCC--C-----cccEEEEc--C----eeEEeec-CCCCchHHHHHHHHHHHHHHHHhCCCCeEEEEeCh
Q psy8162 104 NHTICYTDGSKTMN--S-----TSCAYSIN--D----VISSSQL-NPVNSIFSAELIAIYLCLEAITVHPSDHFLIVSDS 169 (326)
Q Consensus 104 ~~i~IyTDGS~~~~--~-----~G~gvv~~--~----~~~~~~l-~~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDS 169 (326)
..++|||||||.+| + +|+|+++. + ....+.. ....+++.||+.|+..||+.+...+ .+|+|+|||
T Consensus 6 ~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~~-~~v~I~TDS 84 (165)
T 2lsn_A 6 YEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKIP-GPVLVITDS 84 (165)
T ss_dssp CSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHSS-SCEEEEESC
T ss_pred ceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEeCh
Confidence 46899999999865 2 68998763 1 1223333 3456788899999999998877654 479999999
Q ss_pred HHHHHHhhcCCCCCccccccccchhhhhhcccccccccccchhHhhhhccCCcchHHHHHHHHHHHHHHhCCCcEEEEEe
Q psy8162 170 RSALAALSNVSFTNPLVSKVYSCWDLLKTLNKDVHFVLKPSQSALAALSNVSFTNPLVSKVYSCWDLLKTLNKDVHFLWC 249 (326)
Q Consensus 170 ~~ai~~i~~~~~~~~~~~~i~~~~~~~k~~~~~~~~i~~~~~~~~~a~~n~~~~~~l~~~i~~~~~~l~~~~~~V~~~WV 249 (326)
+||+++|+.|...| ..++ |++. ..++|+|.|+ +++| ..+......|+|.||
T Consensus 85 ~Yvi~~it~w~~~W-----k~ng---w~~~-------------~~~pVkN~dL----~~~l----~~~~~~~~~v~~~~V 135 (165)
T 2lsn_A 85 FYVAESANKELPYW-----KSNG---FVNN-------------KKKPLKHISK----WKSI----AECLSMKPDITIQHE 135 (165)
T ss_dssp HHHHHHHHTHHHHH-----HHTT---SCSC-------------SSSCCSSHHH----HHHH----HHHHHHCTTCEEEEC
T ss_pred HHHHhhhhhhhhhh-----eecc---cccc-------------CCCcccCHHH----HHHH----HHHHhCCCCEEEEEE
Confidence 99999999865432 2111 2221 1345777654 3433 223334568999999
Q ss_pred eccCCC------ccchHHhHHhcCCCC
Q psy8162 250 PSHCGI------RGNEAVDEAARNPVN 270 (326)
Q Consensus 250 pgH~Gi------~GNE~AD~LAk~Aa~ 270 (326)
|||+|+ +|||+||+||++|+.
T Consensus 136 kgH~g~~~~~~~~gNe~AD~LA~~gA~ 162 (165)
T 2lsn_A 136 KGHQPTNTSIHTEGNALADKLATQGSY 162 (165)
T ss_dssp CSSSCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCccCCCCChHHHHHHHHHHHhhh
Confidence 999995 589999999998864
No 7
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.90 E-value=1.1e-24 Score=188.26 Aligned_cols=135 Identities=21% Similarity=0.233 Sum_probs=94.9
Q ss_pred CcEEEEecCCCCCC--CcccEEEEc--CeeE--EeecCCCCchHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHHHHHhh
Q psy8162 104 NHTICYTDGSKTMN--STSCAYSIN--DVIS--SSQLNPVNSIFSAELIAIYLCLEAITVHPSDHFLIVSDSRSALAALS 177 (326)
Q Consensus 104 ~~i~IyTDGS~~~~--~~G~gvv~~--~~~~--~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~ai~~i~ 177 (326)
..+.|||||||.++ .+|+|+++. +... +..+ ..+|++.||+.|++.||+.+... .+|+|+|||++|+++|+
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~AL~~~~~~--~~v~I~tDS~~vi~~i~ 81 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGF-SLTTNNRMELLAPIVALEALKEP--CKIILTSDSQYMRQGIM 81 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSSC--CEEEEEECCHHHHHHHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCc-CCCccHHHHHHHHHHHHHHhccC--CeEEEEeCHHHHHHHHH
Confidence 46899999999865 378898763 2221 2223 35789999999999999998653 78999999999999998
Q ss_pred cCCCCCccccccccchhhhhhcccccccccccchhHhhhhccCCcchHHHHHHHHHHHHHHhCCCcEEEEEeeccCCCcc
Q psy8162 178 NVSFTNPLVSKVYSCWDLLKTLNKDVHFVLKPSQSALAALSNVSFTNPLVSKVYSCWDLLKTLNKDVHFLWCPSHCGIRG 257 (326)
Q Consensus 178 ~~~~~~~~~~~i~~~~~~~k~~~~~~~~i~~~~~~~~~a~~n~~~~~~l~~~i~~~~~~l~~~~~~V~~~WVpgH~Gi~G 257 (326)
.|...| ..+. |++. ...+++|. +++++| ..+.. ...|.|.|||||+|++|
T Consensus 82 ~w~~~W-----~~n~---~~~~-------------~g~~v~n~----~l~~~i----~~l~~-~~~v~~~wV~gH~g~~~ 131 (158)
T 2e4l_A 82 TWIHGW-----KKKG---WMTS-------------NRTPVKNV----DLWKRL----DKAAQ-LHQIDWRWVKGHAGHAE 131 (158)
T ss_dssp THHHHH-----HHTT---TBCT-------------TSSBCTTH----HHHHHH----HHHHT-TSEEEEEECCTTCCCHH
T ss_pred HHHHHH-----HHcc---cccc-------------CCCcccCH----HHHHHH----HHHHc-cCcEEEEEccCCCCchh
Confidence 854321 1110 1110 01123342 334443 33332 46899999999999999
Q ss_pred chHHhHHhcCCCCc
Q psy8162 258 NEAVDEAARNPVNP 271 (326)
Q Consensus 258 NE~AD~LAk~Aa~~ 271 (326)
||.||+||++|+..
T Consensus 132 Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 132 NERCDQLARAAAEA 145 (158)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999876
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.89 E-value=1.8e-24 Score=188.49 Aligned_cols=138 Identities=20% Similarity=0.086 Sum_probs=95.7
Q ss_pred CcEEEEecCCCCCC--CcccEEEEcC--eeEEeec-CCCCchHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHHHHHhhc
Q psy8162 104 NHTICYTDGSKTMN--STSCAYSIND--VISSSQL-NPVNSIFSAELIAIYLCLEAITVHPSDHFLIVSDSRSALAALSN 178 (326)
Q Consensus 104 ~~i~IyTDGS~~~~--~~G~gvv~~~--~~~~~~l-~~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~ai~~i~~ 178 (326)
..+.|||||||.++ .+|+|+++.. ....+.. ...+|+++||+.|++.||+.+... ..|+|+|||++|+++|+.
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tDS~~vi~~i~~ 84 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGEACTTNNRMELKAAIEGLKALKEP--CEVDLYTDSHYLKKAFTE 84 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEEEEECHHHHHHHHHHHHHHSCCSC--CEEEEECCCHHHHHHHHS
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHhccC--CeEEEEeChHHHHHHHhh
Confidence 57899999999865 3789988742 1111111 135789999999999999988653 589999999999999998
Q ss_pred -CCCCCccccccccchhhhhhcccccccccccchhHhhhhccCCcchHHHHHHHHHHHHHHhCCCcEEEEEeeccCCCcc
Q psy8162 179 -VSFTNPLVSKVYSCWDLLKTLNKDVHFVLKPSQSALAALSNVSFTNPLVSKVYSCWDLLKTLNKDVHFLWCPSHCGIRG 257 (326)
Q Consensus 179 -~~~~~~~~~~i~~~~~~~k~~~~~~~~i~~~~~~~~~a~~n~~~~~~l~~~i~~~~~~l~~~~~~V~~~WVpgH~Gi~G 257 (326)
|...| ..+. |++. ...+++|. +++++| ..+.. ...|.|.|||||+|++|
T Consensus 85 ~w~~~W-----~~~~---w~~~-------------~g~~v~n~----~l~~~i----~~l~~-~~~v~~~wV~gH~g~~~ 134 (166)
T 1ril_A 85 GWLEGW-----RKRG---WRTA-------------EGKPVKNR----DLWEAL----LLAMA-PHRVRFHFVKGHTGHPE 134 (166)
T ss_dssp SHHHHH-----HHTT---SBCT-------------TSSBCTTH----HHHHHH----HHHHT-TSEEECCCCCGGGSCTH
T ss_pred hHHHHH-----Hhcc---cccc-------------cCCccCcH----HHHHHH----HHHHh-cCeEEEEEeeCCCCchh
Confidence 43221 1000 1110 01123332 334443 33333 36999999999999999
Q ss_pred chHHhHHhcCCCCccc
Q psy8162 258 NEAVDEAARNPVNPAR 273 (326)
Q Consensus 258 NE~AD~LAk~Aa~~~~ 273 (326)
||.||+||++|+....
T Consensus 135 Ne~AD~LAk~a~~~~~ 150 (166)
T 1ril_A 135 NERVDREARRQAQSQA 150 (166)
T ss_dssp HHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998764
No 9
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.88 E-value=1.2e-24 Score=185.89 Aligned_cols=128 Identities=14% Similarity=0.061 Sum_probs=90.5
Q ss_pred CCCcEEEEecCCCCCCCcccEEEEc--Cee--EEe-ec--CC--CCchHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHH
Q psy8162 102 YVNHTICYTDGSKTMNSTSCAYSIN--DVI--SSS-QL--NP--VNSIFSAELIAIYLCLEAITVHPSDHFLIVSDSRSA 172 (326)
Q Consensus 102 ~~~~i~IyTDGS~~~~~~G~gvv~~--~~~--~~~-~l--~~--~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~a 172 (326)
+.+.+.|||||||.++.+|+|+++. +.. .+. .+ +. .+|+++||+.|++.||+.+.+.+. +|.|+|||+.+
T Consensus 3 ~~~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS~~i 81 (147)
T 2kq2_A 3 DRTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHDYAGI 81 (147)
T ss_dssp TTSCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCCSTH
T ss_pred CCCeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEECcHHH
Confidence 3567999999999997799998873 222 222 22 22 358999999999999999887666 89999999877
Q ss_pred HHHhhcCCCCCccccccccchhhhhhcccccccccccchhHhhhhccCCcchHHHHHHHHHHHHHHhCCCcEEEEEeecc
Q psy8162 173 LAALSNVSFTNPLVSKVYSCWDLLKTLNKDVHFVLKPSQSALAALSNVSFTNPLVSKVYSCWDLLKTLNKDVHFLWCPSH 252 (326)
Q Consensus 173 i~~i~~~~~~~~~~~~i~~~~~~~k~~~~~~~~i~~~~~~~~~a~~n~~~~~~l~~~i~~~~~~l~~~~~~V~~~WVpgH 252 (326)
...+.+.+..+. ...++|.++ ++.+. ..|.|.|||||
T Consensus 82 ~~w~~~~w~~~~-----------------------------~~~~~~~~l-----------~~~l~---~~v~~~wV~gH 118 (147)
T 2kq2_A 82 AFWATGEWKAKN-----------------------------EFTQAYAKL-----------MNQYR---GIYSFEKVKAH 118 (147)
T ss_dssp HHHTTSSSSCCH-----------------------------HHHHHHHCG-----------GGGGS---TTCCBCCCCCC
T ss_pred HHHHhCCCccCC-----------------------------cchHHHHHH-----------HHHhc---CCeeEEEecCc
Confidence 665544222110 001112111 11222 18999999999
Q ss_pred CCCccchHHhHHhcCCCCccc
Q psy8162 253 CGIRGNEAVDEAARNPVNPAR 273 (326)
Q Consensus 253 ~Gi~GNE~AD~LAk~Aa~~~~ 273 (326)
+|++|||.||+||++|+....
T Consensus 119 ~g~~~Ne~AD~LA~~a~~~~~ 139 (147)
T 2kq2_A 119 SGNEFNDYVDMKAKSALGIRD 139 (147)
T ss_dssp CCCHHHHHHHHHHHHHHTCCC
T ss_pred CCCcchHHHHHHHHHHHhccc
Confidence 999999999999999987653
No 10
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.83 E-value=1.3e-20 Score=156.82 Aligned_cols=123 Identities=20% Similarity=0.238 Sum_probs=89.7
Q ss_pred CcEEEEecCCCCCC--CcccEEEEcC----ee--EEeecCCCCchHHHHHHHHHHHHHHHHhCCCC----eEEEEeChHH
Q psy8162 104 NHTICYTDGSKTMN--STSCAYSIND----VI--SSSQLNPVNSIFSAELIAIYLCLEAITVHPSD----HFLIVSDSRS 171 (326)
Q Consensus 104 ~~i~IyTDGS~~~~--~~G~gvv~~~----~~--~~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~----~i~I~tDS~~ 171 (326)
..+.||||||+.++ .+|+|+++.+ .. .+..+ +.+|++.||+.|++.||+.+.+.+.+ +|.|+|||++
T Consensus 2 ~~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~ 80 (140)
T 3u3g_D 2 NKIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYI-GETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSEL 80 (140)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEE-EEECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHH
T ss_pred ceEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeC-CCCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHH
Confidence 36899999999865 4789988732 11 12222 34799999999999999999887666 9999999999
Q ss_pred HHHHhhcCCCCCccccccccchhhhhhcccccccccccchhHhhhhccCCcchHHHHHHHHHHHHH-HhCCCcEEEEEee
Q psy8162 172 ALAALSNVSFTNPLVSKVYSCWDLLKTLNKDVHFVLKPSQSALAALSNVSFTNPLVSKVYSCWDLL-KTLNKDVHFLWCP 250 (326)
Q Consensus 172 ai~~i~~~~~~~~~~~~i~~~~~~~k~~~~~~~~i~~~~~~~~~a~~n~~~~~~l~~~i~~~~~~l-~~~~~~V~~~WVp 250 (326)
+++.+++++... ...+ .+++++ +..+ ......|+|.|||
T Consensus 81 vi~~i~~~~~~~--~~~l----------------------------------~~~~~~----i~~l~~~~~~~v~~~~V~ 120 (140)
T 3u3g_D 81 IVRQMQGVYKVK--EPTL----------------------------------KEKFAK----IAHIKMERVPNLVFVHIP 120 (140)
T ss_dssp HHHHHTTSSCCC--CGGG----------------------------------HHHHHH----HHHHHHHHCTTCEEEECC
T ss_pred HHHHhCCCcccC--CHHH----------------------------------HHHHHH----HHHHhhcCCCcEEEEEcC
Confidence 999998854211 0011 122333 3334 4455699999999
Q ss_pred ccCCCccchHHhHHhcCCCCc
Q psy8162 251 SHCGIRGNEAVDEAARNPVNP 271 (326)
Q Consensus 251 gH~Gi~GNE~AD~LAk~Aa~~ 271 (326)
+ +|||.||+||++|+..
T Consensus 121 ~----~~N~~AD~LA~~a~~~ 137 (140)
T 3u3g_D 121 R----EKNARADELVNEAIDK 137 (140)
T ss_dssp G----GGGHHHHHHHHHHHHH
T ss_pred c----hhhHHHHHHHHHHHHh
Confidence 6 6999999999988753
No 11
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.83 E-value=1.3e-20 Score=157.59 Aligned_cols=124 Identities=18% Similarity=0.210 Sum_probs=91.6
Q ss_pred cEEEEecCCCCCC--CcccEEEEcC-----eeEEe-ecCCCCchHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHHHHHh
Q psy8162 105 HTICYTDGSKTMN--STSCAYSIND-----VISSS-QLNPVNSIFSAELIAIYLCLEAITVHPSDHFLIVSDSRSALAAL 176 (326)
Q Consensus 105 ~i~IyTDGS~~~~--~~G~gvv~~~-----~~~~~-~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~ai~~i 176 (326)
.++||||||+.++ .+|+|+++.+ ....+ ...+.+|++.||+.|++.||+.+.+.+..+|.|+|||+++++.+
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~i 82 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQM 82 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccCCCCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHHH
Confidence 5899999999865 4789987632 11111 11236799999999999999999988788999999999999999
Q ss_pred hcCCCCCccccccccchhhhhhcccccccccccchhHhhhhccCCcchHHHHHHHHHHHHHHhCCCcEEEEEeeccCCCc
Q psy8162 177 SNVSFTNPLVSKVYSCWDLLKTLNKDVHFVLKPSQSALAALSNVSFTNPLVSKVYSCWDLLKTLNKDVHFLWCPSHCGIR 256 (326)
Q Consensus 177 ~~~~~~~~~~~~i~~~~~~~k~~~~~~~~i~~~~~~~~~a~~n~~~~~~l~~~i~~~~~~l~~~~~~V~~~WVpgH~Gi~ 256 (326)
++.+... ++.+.+++..+..+...+..|+|.|||+ +
T Consensus 83 ~~~~~~~----------------------------------------~~~l~~~~~~i~~l~~~~~~v~~~~V~~----~ 118 (141)
T 3hst_B 83 SGRWKVK----------------------------------------HPDLLKLYVQAQALASQFRRINYEWVPR----A 118 (141)
T ss_dssp TTSSCCC----------------------------------------SHHHHHHHHHHHHHHTTSSEEEEEECCG----G
T ss_pred hCCcccC----------------------------------------CHHHHHHHHHHHHHHhcCCeEEEEEcCC----c
Confidence 8742110 0011222223445556678999999997 6
Q ss_pred cchHHhHHhcCCCCcc
Q psy8162 257 GNEAVDEAARNPVNPA 272 (326)
Q Consensus 257 GNE~AD~LAk~Aa~~~ 272 (326)
+||.||+||++|+...
T Consensus 119 ~N~~AD~LA~~a~~~~ 134 (141)
T 3hst_B 119 RNTYADRLANDAMDAA 134 (141)
T ss_dssp GCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh
Confidence 9999999999987653
No 12
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.82 E-value=1.7e-20 Score=191.02 Aligned_cols=119 Identities=22% Similarity=0.327 Sum_probs=90.2
Q ss_pred CCcEEEEecCCCCCCC--cccEEEEcC-eeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHHHHHhhcC
Q psy8162 103 VNHTICYTDGSKTMNS--TSCAYSIND-VISSSQLNPVNSIFSAELIAIYLCLEAITVHPSDHFLIVSDSRSALAALSNV 179 (326)
Q Consensus 103 ~~~i~IyTDGS~~~~~--~G~gvv~~~-~~~~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~ai~~i~~~ 179 (326)
.+.+.|||||||.+++ +|+|+++.. ......+ ..+|+++||+.|++.||+. ....+.|+|||++|+++|++|
T Consensus 434 ~~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~v~~~i~~~ 508 (555)
T 1mu2_A 434 PGAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKKL-EQTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGIVASQ 508 (555)
T ss_dssp TTCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHHHHTC
T ss_pred CCceEEEEcccccCCCCCceEEEEEEeCCEeeccC-CCCCHHHHHHHHHHHHHHc----CCCeEEEEEehHHHHHHHhcc
Confidence 4569999999998654 688887743 2223333 4678999999999999998 457899999999999999985
Q ss_pred CCCCccccccccchhhhhhcccccccccccchhHhhhhccCCcchHHHHHHHHHHHHHHhCCCcEEEEEeeccCCCccch
Q psy8162 180 SFTNPLVSKVYSCWDLLKTLNKDVHFVLKPSQSALAALSNVSFTNPLVSKVYSCWDLLKTLNKDVHFLWCPSHCGIRGNE 259 (326)
Q Consensus 180 ~~~~~~~~~i~~~~~~~k~~~~~~~~i~~~~~~~~~a~~n~~~~~~l~~~i~~~~~~l~~~~~~V~~~WVpgH~Gi~GNE 259 (326)
.... . .++++++ .+.+. .+..|.|.|||||+|++|||
T Consensus 509 ~~~~--~-------------------------------------~~l~~~~---~~~~~-~~~~v~~~wV~~H~g~~~Ne 545 (555)
T 1mu2_A 509 PTES--E-------------------------------------SKIVNQI---IEEMI-KKEAIYVAWVPAHKGIGGNQ 545 (555)
T ss_dssp CSEE--S-------------------------------------CHHHHHH---HHHHH-HCSEEEEEECCSSSCCTTHH
T ss_pred cccc--c-------------------------------------HHHHHHH---HHHhc-cCCcEEEEEEECCCCChhHH
Confidence 4211 1 1223333 22222 46789999999999999999
Q ss_pred HHhHHhcCCC
Q psy8162 260 AVDEAARNPV 269 (326)
Q Consensus 260 ~AD~LAk~Aa 269 (326)
.||+||++|+
T Consensus 546 ~AD~LA~~a~ 555 (555)
T 1mu2_A 546 EVDHLVSQGI 555 (555)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHhhC
Confidence 9999999985
No 13
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.81 E-value=2.3e-20 Score=190.14 Aligned_cols=118 Identities=29% Similarity=0.392 Sum_probs=87.0
Q ss_pred CCcEEEEecCCCCCCC--cccEEEEcC-eeEEeecCCCCchHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHHHHHhhcC
Q psy8162 103 VNHTICYTDGSKTMNS--TSCAYSIND-VISSSQLNPVNSIFSAELIAIYLCLEAITVHPSDHFLIVSDSRSALAALSNV 179 (326)
Q Consensus 103 ~~~i~IyTDGS~~~~~--~G~gvv~~~-~~~~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~ai~~i~~~ 179 (326)
.+.+.|||||||.+++ +|+|+++.+ ....+.. ..+|+++||+.|++.||+.+ ...+.|+|||++|+++|+++
T Consensus 437 ~~~~~iytDGs~~~n~g~~g~g~v~~~~~~~~~~~-~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~vi~~i~~~ 511 (557)
T 2zd1_A 437 VGAETFYVDGAANRETKLGKAGYVTNKGRQKVVPL-TNTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGIIQAQ 511 (557)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-CSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHHHHHHHTTC
T ss_pred CCCEEEEEccCCCCCCCceEEEEEEECCcEEEecC-CCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHHHHHHHhcC
Confidence 3568999999998653 688887743 2233333 46799999999999999998 47899999999999999986
Q ss_pred CCCCccccccccchhhhhhcccccccccccchhHhhhhccCCcchHHHHHHHHHHHHHHhCCCcEEEEEeeccCCCccch
Q psy8162 180 SFTNPLVSKVYSCWDLLKTLNKDVHFVLKPSQSALAALSNVSFTNPLVSKVYSCWDLLKTLNKDVHFLWCPSHCGIRGNE 259 (326)
Q Consensus 180 ~~~~~~~~~i~~~~~~~k~~~~~~~~i~~~~~~~~~a~~n~~~~~~l~~~i~~~~~~l~~~~~~V~~~WVpgH~Gi~GNE 259 (326)
...+ . .++++++ .+.+. ....|.|.|||||+|++|||
T Consensus 512 ~~~~--~-------------------------------------~~l~~~~---~~~l~-~~~~v~~~wV~~H~g~~~Ne 548 (557)
T 2zd1_A 512 PDKS--E-------------------------------------SELVNQI---IEQLI-KKEKVYLAWVPAHKGIGGNE 548 (557)
T ss_dssp CSEE--S-------------------------------------SHHHHHH---HHHHH-HCSEEEEEECCSSSCCTTCC
T ss_pred CccC--C-------------------------------------HHHHHHH---HHHHh-cCCCEEEEEcCCCCCChhHH
Confidence 4321 1 1223333 22333 34689999999999999999
Q ss_pred HHhHHhcCC
Q psy8162 260 AVDEAARNP 268 (326)
Q Consensus 260 ~AD~LAk~A 268 (326)
.||+||++|
T Consensus 549 ~AD~LA~~a 557 (557)
T 2zd1_A 549 QVDKLVSAG 557 (557)
T ss_dssp GGGGCC---
T ss_pred HHHHHHhcC
Confidence 999999986
No 14
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.78 E-value=2.3e-19 Score=152.37 Aligned_cols=122 Identities=19% Similarity=0.200 Sum_probs=88.0
Q ss_pred EEEEecCCCC-CC--Cccc-EEEEcC--e-eEEe--ecC---CCCchHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHHH
Q psy8162 106 TICYTDGSKT-MN--STSC-AYSIND--V-ISSS--QLN---PVNSIFSAELIAIYLCLEAITVHPSDHFLIVSDSRSAL 173 (326)
Q Consensus 106 i~IyTDGS~~-~~--~~G~-gvv~~~--~-~~~~--~l~---~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~ai 173 (326)
+.||||||+. ++ ++|+ |+++.+ . ...+ .+. ..+|++.||+.|++.||+.+.+.+..+|.|+|||++++
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~vi 81 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLVI 81 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHHH
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHHH
Confidence 6799999998 44 4675 877632 1 1222 222 37899999999999999999987778999999999999
Q ss_pred HHhhcCCCCCccccccccchhhhhhcccccccccccchhHhhhhccCCcchHHHHHHHHHHHHHHhCCCcEEEEEeeccC
Q psy8162 174 AALSNVSFTNPLVSKVYSCWDLLKTLNKDVHFVLKPSQSALAALSNVSFTNPLVSKVYSCWDLLKTLNKDVHFLWCPSHC 253 (326)
Q Consensus 174 ~~i~~~~~~~~~~~~i~~~~~~~k~~~~~~~~i~~~~~~~~~a~~n~~~~~~l~~~i~~~~~~l~~~~~~V~~~WVpgH~ 253 (326)
+.+++++.... .. ..++++++. .+.... .|.|.|||||
T Consensus 82 ~~i~~~w~~~~--~~----------------------------------~~~l~~~i~----~l~~~~-~v~~~~V~~~- 119 (149)
T 2ehg_A 82 KQMNGEYKVKA--KR----------------------------------IIPLYEKAI----ELKKKL-NATLIWVPRE- 119 (149)
T ss_dssp HHHTTSSCCCC--TT----------------------------------HHHHHHHHH----HHHHHH-TCEEEECCGG-
T ss_pred HHHhCccccCC--HH----------------------------------HHHHHHHHH----HHHhcC-CEEEEEcCCc-
Confidence 99998743221 01 112344432 222222 5999999995
Q ss_pred CCccchHHhHHhcCCCCcc
Q psy8162 254 GIRGNEAVDEAARNPVNPA 272 (326)
Q Consensus 254 Gi~GNE~AD~LAk~Aa~~~ 272 (326)
+|+.||+||++|+...
T Consensus 120 ---~N~~AD~LA~~a~~~~ 135 (149)
T 2ehg_A 120 ---ENKEADRLSRVAYELV 135 (149)
T ss_dssp ---GCHHHHHHHHHHHHHH
T ss_pred ---ccHHHHHHHHHHHHhh
Confidence 8999999999998754
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.53 E-value=5.5e-15 Score=125.69 Aligned_cols=126 Identities=15% Similarity=0.019 Sum_probs=87.5
Q ss_pred CCcEEEEecCCCCCC--CcccEEEEcC--eeEEeec-CCCCchHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHHHHHhh
Q psy8162 103 VNHTICYTDGSKTMN--STSCAYSIND--VISSSQL-NPVNSIFSAELIAIYLCLEAITVHPSDHFLIVSDSRSALAALS 177 (326)
Q Consensus 103 ~~~i~IyTDGS~~~~--~~G~gvv~~~--~~~~~~l-~~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~ai~~i~ 177 (326)
.+.+.|||||||.++ .+|+|+++.. ....... ...+|+++||++|++.||+.+.+.+. +|.|+|||++|++.+.
T Consensus 9 ~~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~~~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~vi~w~~ 87 (142)
T 1zbf_A 9 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIPIGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKWVK 87 (142)
T ss_dssp CCSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEEEECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHHHH
T ss_pred CCeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEecccCCcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHHHHHHHH
Confidence 457889999999866 3789988742 1111111 12568999999999999999998766 8999999999999998
Q ss_pred cCCCCCccccccccchhhhhhcccccccccccchhHhhhhccCCcchHHHHHHHHHHHHHHhCCCcEEEEEeeccCCCcc
Q psy8162 178 NVSFTNPLVSKVYSCWDLLKTLNKDVHFVLKPSQSALAALSNVSFTNPLVSKVYSCWDLLKTLNKDVHFLWCPSHCGIRG 257 (326)
Q Consensus 178 ~~~~~~~~~~~i~~~~~~~k~~~~~~~~i~~~~~~~~~a~~n~~~~~~l~~~i~~~~~~l~~~~~~V~~~WVpgH~Gi~G 257 (326)
+........ .+++|.++ ++.|.++.+.+.. ..++...|+.|++.-|
T Consensus 88 ~~~~k~~~~----------------------------~~v~n~dL----w~~l~~~~~w~~~--~~~~~~~~kw~~~~~g 133 (142)
T 1zbf_A 88 DKKAKSTLV----------------------------RNEETALI----WKLVDEAEEWLNT--HTYETPILKWQTDKWG 133 (142)
T ss_dssp HTCCCCCCC----------------------------CSTTTHHH----HHHHHHHHHHHHH--CCCCCCEEECCHHHHC
T ss_pred cCCccCCCC----------------------------CCcccHHH----HHHHHHHHHHHhh--CCCceeEEEeccCccC
Confidence 764322111 12345443 4443333444443 4566667888998899
Q ss_pred chHHhH
Q psy8162 258 NEAVDE 263 (326)
Q Consensus 258 NE~AD~ 263 (326)
|.-||.
T Consensus 134 e~pad~ 139 (142)
T 1zbf_A 134 EIKADY 139 (142)
T ss_dssp SCTTCC
T ss_pred cCcccc
Confidence 999984
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.40 E-value=5.2e-13 Score=112.33 Aligned_cols=75 Identities=16% Similarity=0.096 Sum_probs=57.2
Q ss_pred CCcEEEEecCCCCCCC--cccEEEEcC--e--eEEeecCCCCchHHHHHHHHHHHHHHHHhCCCCeEEEEeChHHHHHHh
Q psy8162 103 VNHTICYTDGSKTMNS--TSCAYSIND--V--ISSSQLNPVNSIFSAELIAIYLCLEAITVHPSDHFLIVSDSRSALAAL 176 (326)
Q Consensus 103 ~~~i~IyTDGS~~~~~--~G~gvv~~~--~--~~~~~l~~~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDS~~ai~~i 176 (326)
+....|||||||.+|. +|+|+|+.. . .....+ +.+|+++||++|++.||+.+.+.+.. +.|+|||++|++.|
T Consensus 3 p~~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~-~~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyVi~wi 80 (134)
T 4htu_A 3 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPI-PIGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTAIKWV 80 (134)
T ss_dssp CCSSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHHHHHH
T ss_pred ccceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCC-CCCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHHHHHH
Confidence 4567899999999763 788555422 1 112222 36799999999999999999886544 89999999999998
Q ss_pred hcC
Q psy8162 177 SNV 179 (326)
Q Consensus 177 ~~~ 179 (326)
.++
T Consensus 81 ~~~ 83 (134)
T 4htu_A 81 KDK 83 (134)
T ss_dssp HHT
T ss_pred HcC
Confidence 875
No 17
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=81.52 E-value=0.37 Score=47.07 Aligned_cols=73 Identities=10% Similarity=-0.039 Sum_probs=46.5
Q ss_pred CCcEEEEecCCCCCCCcccEEEEcC-----ee---EEeecC---CCCchHHHHHHHHHHHHHHHHhC-CCCeEEEEeChH
Q psy8162 103 VNHTICYTDGSKTMNSTSCAYSIND-----VI---SSSQLN---PVNSIFSAELIAIYLCLEAITVH-PSDHFLIVSDSR 170 (326)
Q Consensus 103 ~~~i~IyTDGS~~~~~~G~gvv~~~-----~~---~~~~l~---~~~sv~~AEl~AI~~AL~~~~~~-~~~~i~I~tDS~ 170 (326)
...+++|||+|.. ++| ||+... .. .+..+. ..-+.+..|+.||..|++..... ...+++|+||+.
T Consensus 344 ~~~~~l~~DAS~~--~~g-avL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh~ 420 (455)
T 1rw3_A 344 TKPFELFVDEKQG--YAK-GVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPHA 420 (455)
T ss_dssp CCTTSCEEEEEEC--SSS-BEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSSC
T ss_pred CCcEEEEEeccCC--cce-eEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecCh
Confidence 3457899999843 233 333321 00 111222 23466789999999999988753 457899999997
Q ss_pred HHHHHhhcC
Q psy8162 171 SALAALSNV 179 (326)
Q Consensus 171 ~ai~~i~~~ 179 (326)
++..+.+.
T Consensus 421 -~~~~l~~~ 428 (455)
T 1rw3_A 421 -VEALVKQP 428 (455)
T ss_dssp -TTTTSSST
T ss_pred -HHHHhCCC
Confidence 66666554
No 18
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=64.93 E-value=11 Score=36.46 Aligned_cols=78 Identities=6% Similarity=-0.069 Sum_probs=45.8
Q ss_pred CCcEEEEecCCCCCCCcccEEEEcC-e---e--EEeecCCCCchHHHHHHH-HHHHHHHHHh----CCCCeEEEEeChHH
Q psy8162 103 VNHTICYTDGSKTMNSTSCAYSIND-V---I--SSSQLNPVNSIFSAELIA-IYLCLEAITV----HPSDHFLIVSDSRS 171 (326)
Q Consensus 103 ~~~i~IyTDGS~~~~~~G~gvv~~~-~---~--~~~~l~~~~sv~~AEl~A-I~~AL~~~~~----~~~~~i~I~tDS~~ 171 (326)
...+.++||+|.. | ++|++..+ . . ..+.-......+.-|++| |+.||+.... .....++++||.+.
T Consensus 322 ~~~~~l~~das~~--g-~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~td~~~ 398 (428)
T 2zd1_B 322 SKDLIAEIQKQGQ--G-QWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETW 398 (428)
T ss_dssp TSCCEEEEEEEET--T-EEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEESSCHHHH
T ss_pred CCCEEEEEecCCC--C-cEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEECCCCcEECCccHHHH
Confidence 3468999999942 1 33444321 1 1 222222233455677777 9999987653 22356788999997
Q ss_pred HHHHhhcCCCCC
Q psy8162 172 ALAALSNVSFTN 183 (326)
Q Consensus 172 ai~~i~~~~~~~ 183 (326)
..--...|..+|
T Consensus 399 ~~~~~~~~q~~w 410 (428)
T 2zd1_B 399 ETWWTEYWQATW 410 (428)
T ss_dssp HHHHHHHCCCSS
T ss_pred HHHHHhcccccc
Confidence 665555554443
No 19
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=27.22 E-value=66 Score=27.29 Aligned_cols=51 Identities=16% Similarity=0.082 Sum_probs=29.2
Q ss_pred CcccEEEEcCeeEEeecCC----CCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Q psy8162 118 STSCAYSINDVISSSQLNP----VNSIFSAELIAIYLCLEAITVHPSDHFLIVSD 168 (326)
Q Consensus 118 ~~G~gvv~~~~~~~~~l~~----~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tD 168 (326)
.+|+.+|..+...+..... ......||..||..|.+..........++|+-
T Consensus 37 pVGAVIV~~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~~~~~l~g~tlYvT 91 (179)
T 2nx8_A 37 PIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFVT 91 (179)
T ss_dssp CCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEEE
T ss_pred CEEEEEEECCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHcCCCcccceEEEEC
Confidence 4777666544322222111 11134799999999988765444456677763
No 20
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=23.70 E-value=83 Score=26.27 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=29.6
Q ss_pred CCcccEEEEcCeeEEeecCC----CCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Q psy8162 117 NSTSCAYSINDVISSSQLNP----VNSIFSAELIAIYLCLEAITVHPSDHFLIVSD 168 (326)
Q Consensus 117 ~~~G~gvv~~~~~~~~~l~~----~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tD 168 (326)
..+|+.+|..+...+..... ..-...||..||..|.+.+........++|+-
T Consensus 32 ~pVGAVIV~~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~~~~~~~~l~g~tlYvT 87 (164)
T 1wkq_A 32 GPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTS 87 (164)
T ss_dssp SSCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSSCTTEEEEEE
T ss_pred CCEEEEEEECCEEEEEEecCCcCCCCcccCHHHHHHHHHHHHcCCCCcCceEEEEe
Confidence 35777666443322222111 11234699999999988654444456777763
No 21
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=23.59 E-value=81 Score=25.93 Aligned_cols=51 Identities=20% Similarity=0.124 Sum_probs=31.3
Q ss_pred CcccEEEEcC--eeEEeecCC--CCchHHHHHHHHHHHHHHHHhCCCCeEEEEeCh
Q psy8162 118 STSCAYSIND--VISSSQLNP--VNSIFSAELIAIYLCLEAITVHPSDHFLIVSDS 169 (326)
Q Consensus 118 ~~G~gvv~~~--~~~~~~l~~--~~sv~~AEl~AI~~AL~~~~~~~~~~i~I~tDS 169 (326)
.+|++++..+ +.....+.. ......||..||..|... -......+.|++|.
T Consensus 37 ~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~~ 91 (146)
T 2fr5_A 37 PVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSDL 91 (146)
T ss_dssp CEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESC
T ss_pred CEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeCC
Confidence 5787777533 222222221 112346999999999875 33345788999884
No 22
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=23.19 E-value=1.6e+02 Score=28.93 Aligned_cols=75 Identities=5% Similarity=-0.046 Sum_probs=43.1
Q ss_pred CCcEEEEecCCCCCCCcccEEEEcC---e---eEEeecCCCCchHHHHHHH-HHHHHHHHHhC--C-CCeEEE-EeChHH
Q psy8162 103 VNHTICYTDGSKTMNSTSCAYSIND---V---ISSSQLNPVNSIFSAELIA-IYLCLEAITVH--P-SDHFLI-VSDSRS 171 (326)
Q Consensus 103 ~~~i~IyTDGS~~~~~~G~gvv~~~---~---~~~~~l~~~~sv~~AEl~A-I~~AL~~~~~~--~-~~~i~I-~tDS~~ 171 (326)
...+.+|||+|.. | .+|++..+ . ...+.-......+.-|++| ++.||+..... + ...+.| ++|++.
T Consensus 324 ~~~~~l~~das~~--g-~~g~vl~q~~~~~~~~~~~~~~~~y~~~e~e~la~vv~~l~~~~~~l~g~~p~~~vp~~~~~~ 400 (557)
T 2zd1_A 324 SKDLIAEIQKQGQ--G-QWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKETW 400 (557)
T ss_dssp TSCCEEEEEEEET--T-EEEEEEEEETTEEEEEEEEECCSCSEECHHHHHHHHHHHHHHHHHHHHSSCCEEEESBCHHHH
T ss_pred CCCEEEEEecCCC--C-cEEEEEecCCCceeeeeecccccccCCChHHHHHHHHHHhhhhheEEeCCCCCEECCCcHHHH
Confidence 3458899999843 1 13444322 1 1123323344556789999 99998875421 2 224556 799987
Q ss_pred HHHHhhcCC
Q psy8162 172 ALAALSNVS 180 (326)
Q Consensus 172 ai~~i~~~~ 180 (326)
.......|.
T Consensus 401 ~~~~~~~~~ 409 (557)
T 2zd1_A 401 ETWWTEYWQ 409 (557)
T ss_dssp HHHHHHCSS
T ss_pred HHHhhhchh
Confidence 665555543
No 23
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=23.12 E-value=1.1e+02 Score=25.25 Aligned_cols=27 Identities=19% Similarity=0.058 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEEe
Q psy8162 141 FSAELIAIYLCLEAITVHPSDHFLIVS 167 (326)
Q Consensus 141 ~~AEl~AI~~AL~~~~~~~~~~i~I~t 167 (326)
..||..||..|............++|+
T Consensus 55 ~HAE~~Ai~~a~~~~~~~~l~~~tlyv 81 (159)
T 2b3j_A 55 AHAEHIAIERAAKVLGSWRLEGCTLYV 81 (159)
T ss_dssp CCHHHHHHHHHHHHHTSSCCTTEEEEE
T ss_pred cCHHHHHHHHHHHHcCCCCcceeEEEE
Confidence 479999999998865544455677776
No 24
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=22.52 E-value=70 Score=25.83 Aligned_cols=27 Identities=19% Similarity=0.070 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEEe
Q psy8162 141 FSAELIAIYLCLEAITVHPSDHFLIVS 167 (326)
Q Consensus 141 ~~AEl~AI~~AL~~~~~~~~~~i~I~t 167 (326)
..||..||..|.+..........++|+
T Consensus 52 ~HAE~~Ai~~a~~~~~~~~~~~~tly~ 78 (144)
T 2a8n_A 52 AHAEIAVIRMACEALGQERLPGADLYV 78 (144)
T ss_dssp CCHHHHHHHHHHHHHTCSCCTTCEEEE
T ss_pred CCHHHHHHHHHHHHcCCCccCCeEEEE
Confidence 469999999998765433344456664
No 25
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=21.49 E-value=90 Score=26.22 Aligned_cols=27 Identities=15% Similarity=0.082 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHhCCCCeEEEEe
Q psy8162 141 FSAELIAIYLCLEAITVHPSDHFLIVS 167 (326)
Q Consensus 141 ~~AEl~AI~~AL~~~~~~~~~~i~I~t 167 (326)
..||..||..|.+..........++|+
T Consensus 71 ~HAE~~AI~~a~~~~g~~~l~~~tlYv 97 (171)
T 1wwr_A 71 AHAEMLAIKEACRRLNTKYLEGCELYV 97 (171)
T ss_dssp CCHHHHHHHHHHHHHTCSCCTTEEEEE
T ss_pred cCHHHHHHHHHHHHcCCCccCceEEEE
Confidence 469999999998865444455677776
Done!