RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8162
         (326 letters)



>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse
           transcriptase) {Human immunodeficiency virus type 2
           [TaxId: 11709]}
          Length = 126

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 241 NKDVHFLWCPSHCGIRGNEAVDEAAR 266
            + ++  W P+H GI GN+ VD    
Sbjct: 98  KEAIYVAWVPAHKGIGGNQEVDHLVS 123


>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus
           [TaxId: 274]}
          Length = 147

 Score = 34.9 bits (79), Expect = 0.004
 Identities = 12/35 (34%), Positives = 13/35 (37%)

Query: 233 CWDLLKTLNKDVHFLWCPSHCGIRGNEAVDEAARN 267
              LL      V F +   H G   NE VD  AR 
Sbjct: 105 EALLLAMAPHRVRFHFVKGHTGHPENERVDREARR 139


>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId:
           562]}
          Length = 152

 Score = 33.5 bits (75), Expect = 0.015
 Identities = 9/26 (34%), Positives = 11/26 (42%)

Query: 241 NKDVHFLWCPSHCGIRGNEAVDEAAR 266
              + + W   H G   NE  DE AR
Sbjct: 111 QHQIKWEWVKGHAGHPENERADELAR 136


>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
           (Gallus gallus), Va isoform [TaxId: 9031]}
          Length = 730

 Score = 30.9 bits (69), Expect = 0.23
 Identities = 23/144 (15%), Positives = 44/144 (30%), Gaps = 8/144 (5%)

Query: 102 YVNHTICYTDGSKTMNSTSCAYSINDVISSSQLNP-VNSIFSAELIAIYLCLEAITVHPS 160
           + +      +G    N  +       V+ SS+    +  +F  E  AI       +    
Sbjct: 491 FADKVEYQCEGFLEKNKDTVYEEQIKVLKSSKKFKLLPELFQDEEKAISPTSATPSGRVP 550

Query: 161 DHFLIVSDSRSALAALSNVSFTNPLVSKVYSCWDLLKTLNK-DVHFV--LKPSQSALAAL 217
                V  +++     S             S   L++TLN    H+V  +KP+       
Sbjct: 551 LSRTPVKPAKARPGQTSKEHKKTVGHQFRNSLHLLMETLNATTPHYVRCIKPNDFKFPFT 610

Query: 218 SNVSFTNPLVSKVYSCWDLLKTLN 241
               F      +      +L+T+ 
Sbjct: 611 ----FDEKRAVQQLRACGVLETIR 630


>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase
           catalytic subunit {Escherichia coli [TaxId: 562]}
          Length = 310

 Score = 29.5 bits (65), Expect = 0.47
 Identities = 6/34 (17%), Positives = 11/34 (32%), Gaps = 4/34 (11%)

Query: 235 DLLKTLNKDVHFLWCPSHCGIRGNEAVDEAARNP 268
             L     ++  L    H   R +E   +  + P
Sbjct: 252 SDLHNAKANMKVL----HPLPRVDEIATDVDKTP 281


>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 511

 Score = 25.7 bits (56), Expect = 9.0
 Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 46  NFPNLISSSDIAPYVRTVPPWSSSSPPVDLSLGKDRKKDTPPVVFQQLFA 95
            + +  + S+++ Y R +PP +   P      G     D    V +++  
Sbjct: 63  GYKSWEAFSNLSYYTRALPPVADDCPTPMGVKGNKELPD-SKEVLEKVLL 111


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.132    0.408 

Gapped
Lambda     K      H
   0.267   0.0596    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,211,623
Number of extensions: 53168
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 12
Length of query: 326
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 240
Effective length of database: 1,226,816
Effective search space: 294435840
Effective search space used: 294435840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.5 bits)