RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8167
(167 letters)
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 65.5 bits (160), Expect = 4e-15
Identities = 20/78 (25%), Positives = 25/78 (32%), Gaps = 19/78 (24%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 115
C +C T +K SL H R H + A R CE C K F +
Sbjct: 10 CEICGFTCRQKASLNWHQRK-HAETV-----------AAL-------RFPCEFCGKRFEK 50
Query: 116 KDSLKKHNRIFHGGADPK 133
DS+ H H
Sbjct: 51 PDSVAAHRSKSHPALLLA 68
Score = 44.3 bits (105), Expect = 5e-07
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 55 PCTLCDKTFTRKDSLKKHIRIFHTQNQPQ 83
PC C K F + DS+ H H
Sbjct: 40 PCEFCGKRFEKPDSVAAHRSKSHPALLLA 68
Score = 37.4 bits (87), Expect = 2e-04
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 105 RCELCDKSFTRKDSLKKHNRI 125
+CE+C + +K SL H R
Sbjct: 9 QCEICGFTCRQKASLNWHQRK 29
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 63.7 bits (156), Expect = 2e-14
Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 20/77 (25%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 115
C +C FT+ ++K HI HT+N + C CD R
Sbjct: 18 CYICHARFTQSGTMKMHILQKHTENVAKF--------------------HCPHCDTVIAR 57
Query: 116 KDSLKKHNRIFHGGADP 132
K L H R H + P
Sbjct: 58 KSDLGVHLRKQHSYSGP 74
Score = 41.7 bits (99), Expect = 4e-06
Identities = 11/65 (16%), Positives = 17/65 (26%), Gaps = 22/65 (33%)
Query: 68 SLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDSLKKHNRIFH 127
S R H+ +P C +C FT+ ++K H H
Sbjct: 2 SSGSSGRT-HSGEKP---------------------YECYICHARFTQSGTMKMHILQKH 39
Query: 128 GGADP 132
Sbjct: 40 TENVA 44
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 59.1 bits (144), Expect = 9e-13
Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 20/73 (27%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 115
C +C + +T + +H H NV C C K FTR
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSH------KRNV--------------KVYPCPFCFKEFTR 52
Query: 116 KDSLKKHNRIFHG 128
KD++ H +I H
Sbjct: 53 KDNMTAHVKIIHK 65
Score = 40.2 bits (95), Expect = 1e-05
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 55 PCTLCDKTFTRKDSLKKHIRIFH 77
PC C K FTRKD++ H++I H
Sbjct: 42 PCPFCFKEFTRKDNMTAHVKIIH 64
Score = 37.5 bits (88), Expect = 1e-04
Identities = 6/23 (26%), Positives = 12/23 (52%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFH 127
RC++C + +T + +H H
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSH 34
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 54.8 bits (133), Expect = 7e-11
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 22/70 (31%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 115
C +C + F+R D L HIR HT +P C++C + F R
Sbjct: 6 CRICMRNFSRSDHLTTHIRT-HTGEKP---------------------FACDICGRKFAR 43
Query: 116 KDSLKKHNRI 125
D K+H I
Sbjct: 44 SDERKRHRDI 53
Score = 49.8 bits (120), Expect = 5e-09
Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 23/69 (33%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 115
C +C + F R D K+H I P I + ++ ++
Sbjct: 34 CDICGRKFARSDERKRHRDI-QHI-LP---------------------ILEDKVEELLSK 70
Query: 116 KDSLKKHNR 124
L+
Sbjct: 71 NYHLENEVA 79
Score = 36.7 bits (86), Expect = 3e-04
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHGG 129
+C +C ++F+R D L H R H G
Sbjct: 5 QCRICMRNFSRSDHLTTHIRT-HTG 28
Score = 29.8 bits (68), Expect = 0.11
Identities = 1/26 (3%), Positives = 8/26 (30%), Gaps = 4/26 (15%)
Query: 56 CTLCDKTFTRKDSLKKHI---RIFHT 78
++ ++ L+ + +
Sbjct: 61 EDKVEELLSKNYHLENEVARLKK-LV 85
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 54.0 bits (131), Expect = 9e-11
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 22/73 (30%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 115
C+ C + + K +L+ H RI H ++P +C C +
Sbjct: 12 CSECSYSCSSKAALRIHERI-HCTDRP---------------------FKCNYCSFDTKQ 49
Query: 116 KDSLKKHNRIFHG 128
+L KH + FHG
Sbjct: 50 PSNLSKHMKKFHG 62
Score = 34.0 bits (79), Expect = 0.003
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C S + K +L+ H RI H P
Sbjct: 12 CSECSYSCSSKAALRIHERI-HCTDRP 37
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 54.0 bits (131), Expect = 1e-10
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 23/74 (31%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 115
C +C + F+R D L HIR HT +P C++C + F R
Sbjct: 37 CRICMRNFSRSDHLTTHIRT-HTGEKP---------------------FACDICGRKFAR 74
Query: 116 KDSLKKHNRIFHGG 129
D K+H +I H
Sbjct: 75 SDERKRHTKI-HLR 87
Score = 50.5 bits (122), Expect = 2e-09
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 23/71 (32%)
Query: 59 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDS 118
CD+ F++ SL +HIRI HT +P +C +C ++F+R D
Sbjct: 12 CDRRFSQSGSLTRHIRI-HTGQKP---------------------FQCRICMRNFSRSDH 49
Query: 119 LKKHNRIFHGG 129
L H R H G
Sbjct: 50 LTTHIRT-HTG 59
Score = 31.7 bits (73), Expect = 0.028
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 105 RCEL--CDKSFTRKDSLKKHNRIFHGG 129
C + CD+ F++ SL +H RI H G
Sbjct: 6 ACPVESCDRRFSQSGSLTRHIRI-HTG 31
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 54.2 bits (131), Expect = 2e-10
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 22/67 (32%)
Query: 59 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDS 118
CD F R D L +H R HT GA+ +C +C++SF+R D
Sbjct: 53 CDWRFARSDELTRHYRK--------HT-------GAK-------PFQCGVCNRSFSRSDH 90
Query: 119 LKKHNRI 125
L H +
Sbjct: 91 LALHMKR 97
Score = 43.8 bits (104), Expect = 1e-06
Identities = 24/76 (31%), Positives = 30/76 (39%), Gaps = 25/76 (32%)
Query: 59 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRC--ELCDKSFTRK 116
C K +T+ LK H+R HT +P +C E CD F R
Sbjct: 23 CTKVYTKSSHLKAHLRT-HTGEKP---------------------YKCTWEGCDWRFARS 60
Query: 117 DSLKKHNRIFHGGADP 132
D L +H R H GA P
Sbjct: 61 DELTRHYRK-HTGAKP 75
Score = 38.8 bits (91), Expect = 8e-05
Identities = 8/23 (34%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C +C+++F+R D L H++ H
Sbjct: 78 CGVCNRSFSRSDHLALHMKR-HQ 99
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 52.5 bits (127), Expect = 2e-10
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 22/74 (29%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 115
C +C + F R++ LK+H R HT +P C LC+++FTR
Sbjct: 5 CEVCTRAFARQEHLKRHYRS-HTNEKPYP---------------------CGLCNRAFTR 42
Query: 116 KDSLKKHNRIFHGG 129
+D L +H + H G
Sbjct: 43 RDLLIRHAQKIHSG 56
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 52.9 bits (128), Expect = 3e-10
Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 22/67 (32%)
Query: 59 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDS 118
C F R D L +H R HT G R +C+ CD++F+R D
Sbjct: 43 CGWKFARSDELTRHYRK--------HT-------GHR-------PFQCQKCDRAFSRSDH 80
Query: 119 LKKHNRI 125
L H +
Sbjct: 81 LALHMKR 87
Score = 46.4 bits (111), Expect = 1e-07
Identities = 22/78 (28%), Positives = 28/78 (35%), Gaps = 21/78 (26%)
Query: 55 PCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFT 114
C KT+T+ LK H+R HT +P H + C F
Sbjct: 9 DYAGCGKTYTKSSHLKAHLRT-HTGEKPYHCDWDG-------------------CGWKFA 48
Query: 115 RKDSLKKHNRIFHGGADP 132
R D L +H R H G P
Sbjct: 49 RSDELTRHYRK-HTGHRP 65
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 52.3 bits (126), Expect = 5e-10
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 22/67 (32%)
Query: 59 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDS 118
CD+ F+R D L +HIRI HT G + +C +C ++F+R D
Sbjct: 27 CDRRFSRSDELTRHIRI--------HT-------GQK-------PFQCRICMRNFSRSDH 64
Query: 119 LKKHNRI 125
L H R
Sbjct: 65 LTTHIRT 71
Score = 37.3 bits (87), Expect = 2e-04
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 55 PCTLCDKTFTRKDSLKKHIRIFHT 78
C +C + F+R D L HIR HT
Sbjct: 51 QCRICMRNFSRSDHLTTHIRT-HT 73
Score = 32.7 bits (75), Expect = 0.009
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 105 RC--ELCDKSFTRKDSLKKHNRIFHGGADP 132
C E CD+ F+R D L +H RI H G P
Sbjct: 21 ACPVESCDRRFSRSDELTRHIRI-HTGQKP 49
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 51.4 bits (124), Expect = 1e-09
Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 26/79 (32%)
Query: 55 PCTL--CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCE--LCD 110
PC C + F+ + L H + H + C C
Sbjct: 9 PCDFPGCGRIFSNRQYLNHHKKYQHIHQKS---------------------FSCPEPACG 47
Query: 111 KSFTRKDSLKKHNRIFHGG 129
KSF K LK+H ++ H
Sbjct: 48 KSFNFKKHLKEHMKL-HSD 65
Score = 34.4 bits (80), Expect = 0.002
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 24/60 (40%)
Query: 56 CT--LCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSF 113
C C K+F K LK+H+++ H+ + CE S
Sbjct: 41 CPEPACGKSFNFKKHLKEHMKL-HSDTRD---------------------YICEFSGPSS 78
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 51.3 bits (124), Expect = 1e-09
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 23/74 (31%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 115
C +C K F+RKD LK H+R HT +P +C+ CD +
Sbjct: 11 CEVCGKCFSRKDKLKTHMRC-HTGVKP---------------------YKCKTCDYAAAD 48
Query: 116 KDSLKKHNRIFHGG 129
SL KH RI H
Sbjct: 49 SSSLNKHLRI-HSD 61
Score = 50.5 bits (122), Expect = 4e-09
Identities = 18/74 (24%), Positives = 25/74 (33%), Gaps = 23/74 (31%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 115
C CD SL KH+RI H+ +P +C++C +
Sbjct: 39 CKTCDYAAADSSSLNKHLRI-HSDERP---------------------FKCQICPYASRN 76
Query: 116 KDSLKKHNRIFHGG 129
L H R H G
Sbjct: 77 SSQLTVHLRS-HTG 89
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 52.3 bits (126), Expect = 2e-09
Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 14/75 (18%)
Query: 55 PCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFT 114
P CD+TF+ L H+ + P+ N + C KSF
Sbjct: 27 PKKSCDRTFSTMHELVTHVTM-EHVGGPEQNNHVCYWEE------------CPREGKSFK 73
Query: 115 RKDSLKKHNRIFHGG 129
K L H R+ H G
Sbjct: 74 AKYKLVNHIRV-HTG 87
Score = 46.5 bits (111), Expect = 3e-07
Identities = 22/76 (28%), Positives = 27/76 (35%), Gaps = 25/76 (32%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRC--ELCDKSF 113
C K+F K L HIR+ HT +P C C K F
Sbjct: 65 CPREGKSFKAKYKLVNHIRV-HTGEKP---------------------FPCPFPGCGKIF 102
Query: 114 TRKDSLKKHNRIFHGG 129
R ++LK H R H G
Sbjct: 103 ARSENLKIHKRT-HTG 117
Score = 43.8 bits (104), Expect = 3e-06
Identities = 22/82 (26%), Positives = 28/82 (34%), Gaps = 27/82 (32%)
Query: 55 PCTL--CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCEL--CD 110
PC C K F R ++LK H R HT +P +CE CD
Sbjct: 92 PCPFPGCGKIFARSENLKIHKRT-HTGEKP---------------------FKCEFEGCD 129
Query: 111 KSFTRKDSLKKHNRIFHGGADP 132
+ F KKH + H
Sbjct: 130 RRFANSSDRKKHMHV-HTSDKS 150
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 51.4 bits (124), Expect = 3e-09
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 23/71 (32%)
Query: 59 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDS 118
C++ F+R D LK+H R HT +P +C+ C + F+R D
Sbjct: 44 CERRFSRSDQLKRHQRR-HTGVKP---------------------FQCKTCQRKFSRSDH 81
Query: 119 LKKHNRIFHGG 129
LK H R H G
Sbjct: 82 LKTHTRT-HTG 91
Score = 50.6 bits (122), Expect = 5e-09
Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 24/72 (33%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCEL--CDKSF 113
C C + F+R D LK H R HT +P C C K F
Sbjct: 69 CKTCQRKFSRSDHLKTHTRT-HTGEKP---------------------FSCRWPSCQKKF 106
Query: 114 TRKDSLKKHNRI 125
R D L +H+ +
Sbjct: 107 ARSDELVRHHNM 118
Score = 46.4 bits (111), Expect = 2e-07
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 25/73 (34%)
Query: 59 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCEL--CDKSFTRK 116
C+K + + L+ H R HT +P +C+ C++ F+R
Sbjct: 14 CNKRYFKLSHLQMHSRK-HTGEKP---------------------YQCDFKDCERRFSRS 51
Query: 117 DSLKKHNRIFHGG 129
D LK+H R H G
Sbjct: 52 DQLKRHQRR-HTG 63
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 49.8 bits (120), Expect = 5e-09
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 19/77 (24%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 115
C+ CDKTF +K L H + + + AAF C C K+FTR
Sbjct: 18 CSHCDKTFRQKQLLDMHFKR--------YHD------PNFVPAAF----VCSKCGKTFTR 59
Query: 116 KDSLKKHNRIFHGGADP 132
++++ +H G D
Sbjct: 60 RNTMARHADN-CAGPDG 75
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 48.4 bits (116), Expect = 2e-08
Identities = 21/80 (26%), Positives = 27/80 (33%), Gaps = 25/80 (31%)
Query: 55 PCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRC--ELCDKS 112
C K F + + LK H HTQ P C E CDK
Sbjct: 5 HFENCGKAFKKHNQLKVHQFS-HTQQLP---------------------YECPHEGCDKR 42
Query: 113 FTRKDSLKKHNRIFHGGADP 132
F+ LK+H ++ H G
Sbjct: 43 FSLPSRLKRHEKV-HAGYPC 61
Score = 46.1 bits (110), Expect = 1e-07
Identities = 12/69 (17%), Positives = 19/69 (27%), Gaps = 22/69 (31%)
Query: 59 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDS 118
CDK F+ LK+H ++ H + + + C
Sbjct: 39 CDKRFSLPSRLKRHEKV-HAGYPCK---------------------KDDSCSFVGKTWTL 76
Query: 119 LKKHNRIFH 127
KH H
Sbjct: 77 YLKHVAECH 85
Score = 26.8 bits (60), Expect = 1.2
Identities = 4/22 (18%), Positives = 5/22 (22%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFH 77
C KH+ H
Sbjct: 64 DDSCSFVGKTWTLYLKHVAECH 85
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 47.8 bits (115), Expect = 2e-08
Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 23/74 (31%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 115
C C +F K +L H + HT +P RC +C F R
Sbjct: 20 CDRCQASFRYKGNLASHKTV-HTGEKP---------------------YRCNICGAQFNR 57
Query: 116 KDSLKKHNRIFHGG 129
+LK H RI H G
Sbjct: 58 PANLKTHTRI-HSG 70
Score = 32.8 bits (76), Expect = 0.007
Identities = 9/25 (36%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHGG 129
+C+ C SF K +L H + H G
Sbjct: 19 KCDRCQASFRYKGNLASHKTV-HTG 42
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 47.7 bits (113), Expect = 4e-08
Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 14/75 (18%)
Query: 55 PCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFT 114
P CD+TF+ L H+ + H Q+ +V C KSF
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY-------------WEECPREGKSFK 73
Query: 115 RKDSLKKHNRIFHGG 129
K L H R+ H G
Sbjct: 74 AKYKLVNHIRV-HTG 87
Score = 32.2 bits (73), Expect = 0.018
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHGGADPK 133
+ CD++F+ L H + H G +
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQ 55
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 47.9 bits (115), Expect = 5e-08
Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 24/76 (31%)
Query: 56 CTLCDKTFTRKDSLKKHIRIF--HTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSF 113
C C K + RK++L +H + Q C +C ++F
Sbjct: 38 CPKCGKCYFRKENLLEHEARNCMNRSEQV---------------------FTCSVCQETF 76
Query: 114 TRKDSLKKHNRIFHGG 129
R+ L+ H H G
Sbjct: 77 RRRMELRLHMVS-HTG 91
Score = 46.7 bits (112), Expect = 1e-07
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 24/75 (32%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 115
C++C +TF R+ L+ H+ HT P +C C + F +
Sbjct: 69 CSVCQETFRRRMELRLHMVS-HTGEMP---------------------YKCSSCSQQFMQ 106
Query: 116 KDSLKKH-NRIFHGG 129
K L+ H ++ H G
Sbjct: 107 KKDLQSHMIKL-HSG 120
Score = 46.7 bits (112), Expect = 2e-07
Identities = 19/69 (27%), Positives = 24/69 (34%), Gaps = 22/69 (31%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 115
C C K F K LK H R HT +P C C K + R
Sbjct: 10 CPTCHKKFLSKYYLKVHNRK-HTGEKP---------------------FECPKCGKCYFR 47
Query: 116 KDSLKKHNR 124
K++L +H
Sbjct: 48 KENLLEHEA 56
Score = 34.4 bits (80), Expect = 0.005
Identities = 12/24 (50%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGG 129
C C K F K LK HNR H G
Sbjct: 10 CPTCHKKFLSKYYLKVHNRK-HTG 32
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 47.1 bits (113), Expect = 6e-08
Identities = 19/78 (24%), Positives = 26/78 (33%), Gaps = 23/78 (29%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 115
C +C K F L +H H+ +P C +C F R
Sbjct: 10 CEICGKIFRDVYHLNRHKLS-HSGEKP---------------------YSCPVCGLRFKR 47
Query: 116 KDSLKKHNRIFHGGADPK 133
KD + H R H G+ K
Sbjct: 48 KDRMSYHVRS-HDGSVGK 64
Score = 46.3 bits (111), Expect = 1e-07
Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 24/76 (31%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT--QNQPQHTNVIEVALGARANAAFIDRIRCELCDKSF 113
C +C F RKD + H+R H +P C+ C K F
Sbjct: 38 CPVCGLRFKRKDRMSYHVRS-HDGSVGKP---------------------YICQSCGKGF 75
Query: 114 TRKDSLKKHNRIFHGG 129
+R D L H + H G
Sbjct: 76 SRPDHLNGHIKQVHSG 91
Score = 30.9 bits (71), Expect = 0.048
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHGG 129
CE+C K F L +H H G
Sbjct: 9 ACEICGKIFRDVYHLNRHKLS-HSG 32
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 45.1 bits (108), Expect = 3e-07
Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 23/74 (31%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 115
C +C K+F R +L H+ I H+ +P C+ C K F +
Sbjct: 4 CKICGKSFKRSSTLSTHLLI-HSDTRP---------------------YPCQYCGKRFHQ 41
Query: 116 KDSLKKHNRIFHGG 129
K +KKH I H G
Sbjct: 42 KSDMKKHTFI-HTG 54
Score = 43.2 bits (103), Expect = 1e-06
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 23/74 (31%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 115
C C K F +K +KKH I HT +P +C++C K+F++
Sbjct: 32 CQYCGKRFHQKSDMKKHTFI-HTGEKP---------------------HKCQVCGKAFSQ 69
Query: 116 KDSLKKHNRIFHGG 129
+L H+R H G
Sbjct: 70 SSNLITHSRK-HTG 82
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 46.4 bits (111), Expect = 4e-07
Identities = 19/72 (26%), Positives = 25/72 (34%), Gaps = 24/72 (33%)
Query: 59 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCE--LCDKSFTRK 116
C+K FT L +H HT + C+ CD FT K
Sbjct: 50 CEKGFTSLHHLTRHSLT-HTGEKN---------------------FTCDSDGCDLRFTTK 87
Query: 117 DSLKKHNRIFHG 128
++KKH FH
Sbjct: 88 ANMKKHFNRFHN 99
Score = 46.4 bits (111), Expect = 6e-07
Identities = 21/76 (27%), Positives = 27/76 (35%), Gaps = 25/76 (32%)
Query: 59 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRC--ELCDKSFTRK 116
C K F + + LK H HTQ P C E CDK F+
Sbjct: 112 CGKAFKKHNQLKVHQFS-HTQQLP---------------------YECPHEGCDKRFSLP 149
Query: 117 DSLKKHNRIFHGGADP 132
LK+H ++ H G
Sbjct: 150 SRLKRHEKV-HAGYPC 164
Score = 43.7 bits (104), Expect = 5e-06
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 23/73 (31%)
Query: 59 CDKTFTRKDSLKKHIRIFHT--QNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRK 116
CD FT K ++KKH + + C K+F +
Sbjct: 80 CDLRFTTKANMKKHFNR-FHNIKICVYVCHFEN-------------------CGKAFKKH 119
Query: 117 DSLKKHNRIFHGG 129
+ LK H H
Sbjct: 120 NQLKVHQFS-HTQ 131
Score = 41.8 bits (99), Expect = 2e-05
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 25/73 (34%)
Query: 59 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCE--LCDKSFTRK 116
C + + L+ H+ HT +P C+ C+K FT
Sbjct: 20 CGAAYNKNWKLQAHLCK-HTGEKP---------------------FPCKEEGCEKGFTSL 57
Query: 117 DSLKKHNRIFHGG 129
L +H+ H G
Sbjct: 58 HHLTRHSLT-HTG 69
Score = 39.5 bits (93), Expect = 1e-04
Identities = 12/69 (17%), Positives = 19/69 (27%), Gaps = 22/69 (31%)
Query: 59 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDS 118
CDK F+ LK+H ++ H + + + C
Sbjct: 142 CDKRFSLPSRLKRHEKV-HAGYPCK---------------------KDDSCSFVGKTWTL 179
Query: 119 LKKHNRIFH 127
KH H
Sbjct: 180 YLKHVAECH 188
Score = 29.1 bits (66), Expect = 0.46
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 3/29 (10%)
Query: 106 CEL--CDKSFTRKDSLKKHNRIFHGGADP 132
C C ++ + L+ H H G P
Sbjct: 15 CSFADCGAAYNKNWKLQAHLCK-HTGEKP 42
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 43.6 bits (104), Expect = 9e-07
Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 23/77 (29%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 115
C C K F+R L +H R+ HT +P +C C K+F++
Sbjct: 17 CVECGKAFSRSSILVQHQRV-HTGEKP---------------------YKCLECGKAFSQ 54
Query: 116 KDSLKKHNRIFHGGADP 132
L H RI H
Sbjct: 55 NSGLINHQRI-HTSGPS 70
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 44.0 bits (105), Expect = 1e-06
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 23/74 (31%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 115
C C + FT+ +L H R HT +P C++C K+F R
Sbjct: 20 CKFCGRHFTKSYNLLIHERT-HTDERP---------------------YTCDICHKAFRR 57
Query: 116 KDSLKKHNRIFHGG 129
+D L+ H I H
Sbjct: 58 QDHLRDHRYI-HSK 70
Score = 43.6 bits (104), Expect = 2e-06
Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 23/74 (31%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 115
C +C K F R+D L+ H I H++ +P +C+ C K F +
Sbjct: 48 CDICHKAFRRQDHLRDHRYI-HSKEKP---------------------FKCQECGKGFCQ 85
Query: 116 KDSLKKHNRIFHGG 129
+L H + H
Sbjct: 86 SRTLAVHKTL-HMQ 98
Score = 30.5 bits (70), Expect = 0.079
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQP 82
C C K F + +L H + H Q
Sbjct: 76 CQECGKGFCQSRTLAVHKTL-HMQTSS 101
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 45.1 bits (108), Expect = 1e-06
Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 23/74 (31%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 115
C C K+F+R+D+L H R HT +P +C C KSF+R
Sbjct: 136 CPECGKSFSREDNLHTHQRT-HTGEKP---------------------YKCPECGKSFSR 173
Query: 116 KDSLKKHNRIFHGG 129
+D+L H R H G
Sbjct: 174 RDALNVHQRT-HTG 186
Score = 45.1 bits (108), Expect = 1e-06
Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 23/74 (31%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 115
C C K+F+R D L +H R HT +P +C C KSF+
Sbjct: 24 CPECGKSFSRSDHLAEHQRT-HTGEKP---------------------YKCPECGKSFSD 61
Query: 116 KDSLKKHNRIFHGG 129
K L +H R H G
Sbjct: 62 KKDLTRHQRT-HTG 74
Score = 43.6 bits (104), Expect = 4e-06
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 23/74 (31%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 115
C C K+F++ L+ H R HT +P +C C KSF+R
Sbjct: 108 CPECGKSFSQLAHLRAHQRT-HTGEKP---------------------YKCPECGKSFSR 145
Query: 116 KDSLKKHNRIFHGG 129
+D+L H R H G
Sbjct: 146 EDNLHTHQRT-HTG 158
Score = 43.6 bits (104), Expect = 5e-06
Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 23/74 (31%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 115
C C K+F+ K L +H R HT +P +C C KSF++
Sbjct: 52 CPECGKSFSDKKDLTRHQRT-HTGEKP---------------------YKCPECGKSFSQ 89
Query: 116 KDSLKKHNRIFHGG 129
+ +L+ H R H G
Sbjct: 90 RANLRAHQRT-HTG 102
Score = 42.4 bits (101), Expect = 1e-05
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 23/74 (31%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 115
C C K+F+++ +L+ H R HT +P C C KSF++
Sbjct: 80 CPECGKSFSQRANLRAHQRT-HTGEKP---------------------YACPECGKSFSQ 117
Query: 116 KDSLKKHNRIFHGG 129
L+ H R H G
Sbjct: 118 LAHLRAHQRT-HTG 130
Score = 36.3 bits (85), Expect = 0.002
Identities = 14/68 (20%), Positives = 19/68 (27%), Gaps = 23/68 (33%)
Query: 62 TFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDSLKK 121
+ S + +P C C KSF+R D L +
Sbjct: 2 SEFGSSSSVAQAAL-EPGEKP---------------------YACPECGKSFSRSDHLAE 39
Query: 122 HNRIFHGG 129
H R H G
Sbjct: 40 HQRT-HTG 46
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 44.0 bits (105), Expect = 1e-06
Identities = 19/74 (25%), Positives = 25/74 (33%), Gaps = 21/74 (28%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 115
C C K F LK+H + HT +P C K F+
Sbjct: 37 CAECGKAFVESSKLKRHQLV-HTGEKPFQCTFEG-------------------CGKRFSL 76
Query: 116 KDSLKKHNRIFHGG 129
+L+ H RI H G
Sbjct: 77 DFNLRTHVRI-HTG 89
Score = 42.1 bits (100), Expect = 7e-06
Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 27/81 (33%)
Query: 56 CTL--CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCEL--CDK 111
CT C K F+ +L+ H+RI HT ++P C C+K
Sbjct: 65 CTFEGCGKRFSLDFNLRTHVRI-HTGDRP---------------------YVCPFDGCNK 102
Query: 112 SFTRKDSLKKHNRIFHGGADP 132
F + +LK H H A
Sbjct: 103 KFAQSTNLKSHILT-HAKAKN 122
Score = 39.8 bits (94), Expect = 6e-05
Identities = 16/71 (22%), Positives = 24/71 (33%), Gaps = 24/71 (33%)
Query: 59 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDS 118
C K F +++KH+ H + H C C K+F
Sbjct: 13 CTKMFRDNSAMRKHLHT-HGP-RV-HV--------------------CAECGKAFVESSK 49
Query: 119 LKKHNRIFHGG 129
LK+H + H G
Sbjct: 50 LKRHQLV-HTG 59
Score = 32.5 bits (75), Expect = 0.025
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHG 128
+ C K F +++KH HG
Sbjct: 10 HKGCTKMFRDNSAMRKHLHT-HG 31
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 44.5 bits (106), Expect = 2e-06
Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 23/72 (31%)
Query: 59 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCEL--CDKSFTRK 116
C K F+ KH H+ +P C+L C K +T
Sbjct: 105 CSKAFSNASDRAKHQNRTHSNEKP---------------------YVCKLPGCTKRYTDP 143
Query: 117 DSLKKHNRIFHG 128
SL+KH + HG
Sbjct: 144 SSLRKHVKTVHG 155
Score = 44.1 bits (105), Expect = 2e-06
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 25/76 (32%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRC--ELCDKSF 113
C+ + F + L H+R HT +P +C E C KS+
Sbjct: 42 CSRELRPFKAQYMLVVHMRR-HTGEKP---------------------HKCTFEGCRKSY 79
Query: 114 TRKDSLKKHNRIFHGG 129
+R ++LK H R H G
Sbjct: 80 SRLENLKTHLRS-HTG 94
Score = 42.6 bits (101), Expect = 9e-06
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 25/70 (35%)
Query: 59 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCE--LCDKSFTRK 116
C K+++R ++LK H+R HT +P CE C K+F+
Sbjct: 75 CRKSYSRLENLKTHLRS-HTGEKP---------------------YMCEHEGCSKAFSNA 112
Query: 117 DSLKKH-NRI 125
KH NR
Sbjct: 113 SDRAKHQNRT 122
Score = 33.0 bits (76), Expect = 0.020
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFH 127
R + C + F ++ L H H
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEH 27
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 42.0 bits (99), Expect = 3e-06
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 20/67 (29%)
Query: 59 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDS 118
C KT+ + LK H R HT +P + + C++ F R D
Sbjct: 25 CGKTYFKSSHLKAHTRT-HTGEKPFSCSW-------------------KGCERRFARSDE 64
Query: 119 LKKHNRI 125
L +H R
Sbjct: 65 LSRHRRT 71
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 42.0 bits (100), Expect = 7e-06
Identities = 19/74 (25%), Positives = 26/74 (35%), Gaps = 23/74 (31%)
Query: 59 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDS 118
C K+FT K +H+ + H +P C +C K F K
Sbjct: 15 CGKSFTHKSQRDRHMSM-HLGLRP---------------------YGCGVCGKKFKMKHH 52
Query: 119 LKKHNRIFHGGADP 132
L H +I H G P
Sbjct: 53 LVGHMKI-HTGIKP 65
Score = 40.1 bits (95), Expect = 3e-05
Identities = 18/77 (23%), Positives = 25/77 (32%), Gaps = 25/77 (32%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 115
C +C K F K L H++I HT +P C +C K F
Sbjct: 40 CGVCGKKFKMKHHLVGHMKI-HTGIKP---------------------YECNICAKRFMW 77
Query: 116 KDSLKKHNRIFHGGADP 132
+DS H +
Sbjct: 78 RDSF--HRHV-TSCTKS 91
Score = 30.9 bits (71), Expect = 0.062
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C+ C KSFT K +H + H G P
Sbjct: 13 CQ-CGKSFTHKSQRDRHMSM-HLGLRP 37
Score = 30.9 bits (71), Expect = 0.077
Identities = 8/64 (12%), Positives = 17/64 (26%), Gaps = 24/64 (37%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 115
C +C K F +DS +H+ + + +++ T
Sbjct: 68 CNICAKRFMWRDSFHRHV---TSCTKS---------------------YEAAKAEQNTTE 103
Query: 116 KDSL 119
Sbjct: 104 ASGP 107
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 40.9 bits (97), Expect = 9e-06
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 23/77 (29%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 115
C C K+F+ L KH R HT +P +C+ C K+F +
Sbjct: 21 CDECGKSFSHSSDLSKHRRT-HTGEKP---------------------YKCDECGKAFIQ 58
Query: 116 KDSLKKHNRIFHGGADP 132
+ L H+R+ H G+ P
Sbjct: 59 RSHLIGHHRV-HTGSGP 74
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 36.3 bits (85), Expect = 2e-04
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 55 PCTLCDKTFTRKDSLKKHIRIFHT 78
PC +C F +LK H+RI HT
Sbjct: 13 PCEICGTRFRHLQTLKSHLRI-HT 35
Score = 34.8 bits (81), Expect = 7e-04
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHGG 129
CE+C F +LK H RI H G
Sbjct: 13 PCEICGTRFRHLQTLKSHLRI-HTG 36
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 38.4 bits (88), Expect = 2e-04
Identities = 19/75 (25%), Positives = 22/75 (29%), Gaps = 24/75 (32%)
Query: 55 PCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFT 114
C LC F+ SLK+HIR C +C K FT
Sbjct: 76 VCPLCLMPFSSSVSLKQHIRYTE------------------------HTKVCPVCKKEFT 111
Query: 115 RKDSLKKHNRIFHGG 129
DS H H
Sbjct: 112 STDSALDHVCKKHNI 126
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 36.6 bits (84), Expect = 3e-04
Identities = 19/73 (26%), Positives = 24/73 (32%), Gaps = 22/73 (30%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 115
C C + LKKHIR HT +P C C+ SF
Sbjct: 4 CEECGIRXKKPSMLKKHIRT-HTDVRP---------------------YHCTYCNFSFKT 41
Query: 116 KDSLKKHNRIFHG 128
K +L KH +
Sbjct: 42 KGNLTKHMKSKAH 54
Score = 27.8 bits (61), Expect = 0.37
Identities = 10/35 (28%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 103 RIRCELCDKSFTRKDSLKKHNRIFHGGADPKLMDE 137
+ CE C + LKKH R H P
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRT-HTDVRPYHCTY 34
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 35.7 bits (83), Expect = 3e-04
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQP 82
C C K+FT++ SL H R +Q+ P
Sbjct: 14 CGQCGKSFTQRGSLAVHQRS-CSQSGP 39
Score = 33.8 bits (78), Expect = 0.002
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHGGADP 132
C C KSFT++ SL H R + P
Sbjct: 13 LCGQCGKSFTQRGSLAVHQRS-CSQSGP 39
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 37.4 bits (86), Expect = 4e-04
Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 11/78 (14%)
Query: 56 CTLCDKTFTRKDSLKKHIRIF-HTQNQPQHTNVIEVALGARANAAFIDR----------I 104
C C + L H+ H ++ T+ ++ + +
Sbjct: 22 CKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVL 81
Query: 105 RCELCDKSFTRKDSLKKH 122
+C C SF L H
Sbjct: 82 KCMYCGHSFESLQDLSVH 99
Score = 29.3 bits (65), Expect = 0.31
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 103 RIRCELCDKSFTRKDSLKKHNRI 125
+ RC+ C ++ L H
Sbjct: 19 KFRCKDCSAAYDTLVELTVHMNE 41
Score = 26.3 bits (57), Expect = 3.4
Identities = 8/28 (28%), Positives = 10/28 (35%), Gaps = 1/28 (3%)
Query: 56 CTLCDKTFTRKDSLKKH-IRIFHTQNQP 82
C C +F L H I+ H Q
Sbjct: 83 CMYCGHSFESLQDLSVHMIKTKHYQKVS 110
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 35.6 bits (83), Expect = 5e-04
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 21/59 (35%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFT 114
C C K F+R D L HI+ HT +P +C++ +
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERP---------------------HKCQVWVSGPS 52
Score = 34.1 bits (79), Expect = 0.002
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHGG 129
C+ C K F+R D L H + H
Sbjct: 14 ICQSCGKGFSRPDHLNGHIKQVHTS 38
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 34.9 bits (81), Expect = 7e-04
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQP 82
C C F+ SL KH+R H + P
Sbjct: 15 CKECGMNFSWSCSLFKHLRS-HERTDP 40
Score = 33.7 bits (78), Expect = 0.002
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHGGADP 132
+C+ C +F+ SL KH R H DP
Sbjct: 14 QCKECGMNFSWSCSLFKHLRS-HERTDP 40
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 34.8 bits (81), Expect = 7e-04
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHGGADP 132
+C CD F++ SL+ H + H G P
Sbjct: 14 KCRECDMCFSQASSLRLHQNV-HVGEKP 40
Score = 34.4 bits (80), Expect = 0.001
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C CD F++ SL+ H + H
Sbjct: 15 CRECDMCFSQASSLRLHQNV-HV 36
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 34.4 bits (80), Expect = 0.001
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHGGADP 132
+CE C F + L+ H I H G+ P
Sbjct: 13 KCETCGARFVQVAHLRAHVLI-HTGSGP 39
Score = 33.7 bits (78), Expect = 0.002
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C F + L+ H+ I HT
Sbjct: 14 CETCGARFVQVAHLRAHVLI-HT 35
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 34.2 bits (79), Expect = 0.001
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 56 CTLCDKTFTRKDSLKKHIR 74
C CD++F+R D L H +
Sbjct: 14 CPDCDRSFSRSDHLALHRK 32
Score = 34.2 bits (79), Expect = 0.001
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 105 RCELCDKSFTRKDSLKKHNR 124
+C CD+SF+R D L H +
Sbjct: 13 QCPDCDRSFSRSDHLALHRK 32
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 35.0 bits (80), Expect = 0.001
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 68 SLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDSLKKHNRIFH 127
S K +I H ++ Q + + R+ + CE C K ++ +L K
Sbjct: 5 SSGKRQKI-HLGDRSQKCSKCGIIFIRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNES 63
Query: 128 G 128
G
Sbjct: 64 G 64
Score = 25.0 bits (54), Expect = 6.0
Identities = 5/23 (21%), Positives = 9/23 (39%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K ++ +L K +
Sbjct: 42 CEKCRKDSCQEAALNKDEGN-ES 63
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 33.8 bits (78), Expect = 0.001
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQ 79
C +C + F R++ LK+H R HT
Sbjct: 5 CEVCTRAFARQEHLKRHYRS-HTN 27
Score = 31.5 bits (72), Expect = 0.010
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 105 RCELCDKSFTRKDSLKKHNR 124
CE+C ++F R++ LK+H R
Sbjct: 4 VCEVCTRAFARQEHLKRHYR 23
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 34.1 bits (79), Expect = 0.001
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C+ C+K+F+ K L H R+ HT
Sbjct: 15 CSQCEKSFSGKLRLLVHQRM-HT 36
Score = 33.3 bits (77), Expect = 0.003
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C+KSF+ K L H R+ H P
Sbjct: 15 CSQCEKSFSGKLRLLVHQRM-HTREKP 40
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 33.7 bits (77), Expect = 0.002
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGG 129
C LC+++FTR+D L +H + H G
Sbjct: 5 CGLCNRAFTRRDLLIRHAQKIHSG 28
Score = 30.6 bits (69), Expect = 0.018
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQN 80
C LC++ FTR+D L +H + H+ N
Sbjct: 5 CGLCNRAFTRRDLLIRHAQKIHSGN 29
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 34.1 bits (78), Expect = 0.002
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHGG 129
+C CD+ FT+++ L +H R H
Sbjct: 14 KCSKCDRVFTQRNYLVQHERT-HAR 37
Score = 32.1 bits (73), Expect = 0.008
Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C+ CD+ FT+++ L +H R H
Sbjct: 15 CSKCDRVFTQRNYLVQHERT-HA 36
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 33.7 bits (78), Expect = 0.002
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQP 82
C C K F++K SL HIR+ HT + P
Sbjct: 14 CDQCGKAFSQKGSLIVHIRV-HTGSGP 39
Score = 32.5 bits (75), Expect = 0.005
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHGGADP 132
RC+ C K+F++K SL H R+ H G+ P
Sbjct: 13 RCDQCGKAFSQKGSLIVHIRV-HTGSGP 39
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 33.4 bits (77), Expect = 0.002
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 59 CDKTFTRKDSLKKHIRIFHT 78
C K FTR D L++H R HT
Sbjct: 10 CGKRFTRSDELQRHKRT-HT 28
Score = 32.2 bits (74), Expect = 0.006
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 109 CDKSFTRKDSLKKHNRIFHGG 129
C K FTR D L++H R H G
Sbjct: 10 CGKRFTRSDELQRHKRT-HTG 29
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 33.8 bits (78), Expect = 0.002
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 59 CDKTFTRKDSLKKHIRIFHTQNQP 82
C F+R D L +H R H+ +P
Sbjct: 20 CGWRFSRSDELSRHRRS-HSGVKP 42
Score = 33.4 bits (77), Expect = 0.002
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 109 CDKSFTRKDSLKKHNRIFHGGADP 132
C F+R D L +H R H G P
Sbjct: 20 CGWRFSRSDELSRHRRS-HSGVKP 42
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.003
Identities = 15/86 (17%), Positives = 35/86 (40%), Gaps = 6/86 (6%)
Query: 59 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGA--RANAAFI-DRIRCELCDKSFTR 115
D KD++ +R+F T Q +++ + R N F+ I+ E S
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQ-EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 116 KDSLKKHNRIFHGGADPKLMDEQMAR 141
+ +++ +R+++ ++R
Sbjct: 110 RMYIEQRDRLYNDN--QVFAKYNVSR 133
Score = 31.4 bits (70), Expect = 0.14
Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 27/94 (28%)
Query: 76 FHTQNQPQHTN--VIEVALGARANAAFIDRIRC-------------ELCDKSFTRKDSLK 120
F T + Q+ ++ V AF+D C E D KD++
Sbjct: 9 FET-GEHQYQYKDILSVFE-----DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 121 KHNRIFHGGADPKLMDEQMARGSADFLEVVLNED 154
R+F + + F+E VL +
Sbjct: 63 GTLRLF------WTLLSKQEEMVQKFVEEVLRIN 90
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.003
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C KSFT K L+ H + H G
Sbjct: 15 CSDCGKSFTWKSRLRIHQKC-HTGERH 40
Score = 32.9 bits (76), Expect = 0.004
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C+ C K+FT K L+ H + HT
Sbjct: 15 CSDCGKSFTWKSRLRIHQKC-HT 36
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.003
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C+ C K FTRK L H + HT
Sbjct: 15 CSDCGKAFTRKSGLHIHQQS-HT 36
Score = 32.5 bits (75), Expect = 0.005
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K+FTRK L H + H G
Sbjct: 15 CSDCGKAFTRKSGLHIHQQS-HTGERH 40
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.004
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQP 82
C C K F R L +H++ H + +
Sbjct: 15 CNECGKNFGRHSHLIEHLKR-HFREKS 40
Score = 30.9 bits (71), Expect = 0.022
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K+F R L +H + H
Sbjct: 14 GCNECGKNFGRHSHLIEHLKR-HFREKS 40
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 33.0 bits (75), Expect = 0.004
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQP 82
C +C K F L +H H+ +P
Sbjct: 15 CEICGKIFRDVYHLNRHKLS-HSGEKP 40
Score = 32.2 bits (73), Expect = 0.008
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHGGADP 132
CE+C K F L +H H G P
Sbjct: 14 ACEICGKIFRDVYHLNRHKLS-HSGEKP 40
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 32.2 bits (73), Expect = 0.006
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 53 RIPCTLCDKTFTRKDSLKKHIR 74
+ C C K F R D L KHI
Sbjct: 2 KFACPECPKRFMRSDHLSKHIT 23
Score = 29.9 bits (67), Expect = 0.042
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 103 RIRCELCDKSFTRKDSLKKHNR 124
+ C C K F R D L KH
Sbjct: 2 KFACPECPKRFMRSDHLSKHIT 23
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 32.2 bits (73), Expect = 0.006
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 53 RIPCTLCDKTFTRKDSLKKHIR 74
+ C C K F R D L HI
Sbjct: 2 KFACPECPKRFMRSDHLTLHIL 23
Score = 29.5 bits (66), Expect = 0.058
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 103 RIRCELCDKSFTRKDSLKKHNR 124
+ C C K F R D L H
Sbjct: 2 KFACPECPKRFMRSDHLTLHIL 23
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.007
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K + R+ L H R+ H G
Sbjct: 15 CVECGKGYKRRLDLDFHQRV-HTGEKL 40
Score = 31.7 bits (73), Expect = 0.010
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K + R+ L H R+ HT
Sbjct: 15 CVECGKGYKRRLDLDFHQRV-HT 36
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.008
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
CT C K FTRK +L H +I HT
Sbjct: 15 CTECGKAFTRKSTLSMHQKI-HT 36
Score = 31.3 bits (72), Expect = 0.015
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K+FTRK +L H +I H G P
Sbjct: 15 CTECGKAFTRKSTLSMHQKI-HTGEKP 40
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.008
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C++C K+FT+K L H +I HT
Sbjct: 15 CSICGKSFTKKSQLHVHQQI-HT 36
Score = 31.7 bits (73), Expect = 0.009
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C +C KSFT+K L H +I H G P
Sbjct: 15 CSICGKSFTKKSQLHVHQQI-HTGEKP 40
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.008
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C KSF +K L H RI H G +P
Sbjct: 15 CSDCGKSFIKKSQLHVHQRI-HTGENP 40
Score = 32.1 bits (74), Expect = 0.008
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C+ C K+F +K L H RI HT
Sbjct: 15 CSDCGKSFIKKSQLHVHQRI-HT 36
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 32.1 bits (74), Expect = 0.008
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K F+R+ +L H+++ H G P
Sbjct: 15 CVECGKGFSRRSALNVHHKL-HTGEKP 40
Score = 32.1 bits (74), Expect = 0.009
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K F+R+ +L H ++ HT
Sbjct: 15 CVECGKGFSRRSALNVHHKL-HT 36
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 32.1 bits (74), Expect = 0.009
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K F+RKD L H + H+
Sbjct: 15 CCECGKVFSRKDQLVSHQKT-HS 36
Score = 30.2 bits (69), Expect = 0.036
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K F+RKD L H + H G
Sbjct: 15 CCECGKVFSRKDQLVSHQKT-HSGQSG 40
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.009
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C++C KSF + L +H+ + H P
Sbjct: 15 CDICGKSFCGRSRLNRHSMV-HTAEKP 40
Score = 31.3 bits (72), Expect = 0.016
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C +C K+F + L +H + HT
Sbjct: 15 CDICGKSFCGRSRLNRHSMV-HT 36
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.009
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C++C K F+ + SL H RI H+
Sbjct: 15 CSVCGKAFSHRQSLSVHQRI-HS 36
Score = 30.6 bits (70), Expect = 0.026
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C +C K+F+ + SL H RI H G P
Sbjct: 15 CSVCGKAFSHRQSLSVHQRI-HSGKKP 40
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 33.2 bits (75), Expect = 0.009
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 18/77 (23%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 115
C C + H+ +H NV N++++ C C+ R
Sbjct: 21 CKYCTFQTPDLNMFTFHV-------DSEHPNV-------VLNSSYV----CVECNFLTKR 62
Query: 116 KDSLKKHNRIFHGGADP 132
D+L +HN +H G +
Sbjct: 63 YDALSEHNLKYHPGEEN 79
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 31.7 bits (73), Expect = 0.009
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQP 82
CT C K+F K +L H RI HT +
Sbjct: 15 CTHCGKSFRAKGNLVTHQRI-HTGEKS 40
Score = 31.0 bits (71), Expect = 0.019
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C KSF K +L H RI H G
Sbjct: 15 CTHCGKSFRAKGNLVTHQRI-HTGEKS 40
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 31.7 bits (73), Expect = 0.010
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHGGADP 132
+CE C K F + L H+ + H G P
Sbjct: 14 KCEECGKGFICRRDLYTHHMV-HTGEKP 40
Score = 30.2 bits (69), Expect = 0.041
Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K F + L H + HT
Sbjct: 15 CEECGKGFICRRDLYTHHMV-HT 36
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.011
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHGGADP 132
+CE C K FT+ L H R+ H G P
Sbjct: 14 KCEECGKRFTQNSQLHSHQRV-HTGEKP 40
Score = 31.0 bits (71), Expect = 0.023
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K FT+ L H R+ HT
Sbjct: 15 CEECGKRFTQNSQLHSHQRV-HT 36
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 31.7 bits (73), Expect = 0.011
Identities = 11/23 (47%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C+ C K F RKD L H R H
Sbjct: 13 CSECGKAFNRKDQLISHQRT-HA 34
Score = 31.3 bits (72), Expect = 0.016
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K+F RKD L H R H G
Sbjct: 13 CSECGKAFNRKDQLISHQRT-HAGESG 38
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.011
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C++C KSF SL H RI H G P
Sbjct: 15 CDVCHKSFRYGSSLTVHQRI-HTGEKP 40
Score = 30.9 bits (71), Expect = 0.022
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C +C K+F SL H RI HT
Sbjct: 15 CDVCHKSFRYGSSLTVHQRI-HT 36
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 31.7 bits (73), Expect = 0.011
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C+ C+K F+ K L H + H
Sbjct: 13 CSCCEKAFSSKSYLLVHQQT-HA 34
Score = 31.0 bits (71), Expect = 0.019
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C+K+F+ K L H + H P
Sbjct: 13 CSCCEKAFSSKSYLLVHQQT-HAEEKP 38
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.011
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHGGADP 132
+CE C K + K +L H ++ H G P
Sbjct: 14 KCEKCGKGYNSKFNLDMHQKV-HTGERP 40
Score = 30.6 bits (70), Expect = 0.027
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K + K +L H ++ HT
Sbjct: 15 CEKCGKGYNSKFNLDMHQKV-HT 36
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.012
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K+FT + +L H +I H G P
Sbjct: 15 CAECGKAFTDRSNLFTHQKI-HTGEKP 40
Score = 30.9 bits (71), Expect = 0.017
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K FT + +L H +I HT
Sbjct: 15 CAECGKAFTDRSNLFTHQKI-HT 36
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 31.8 bits (73), Expect = 0.012
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQP 82
C C K F + SL +H R +HT +P
Sbjct: 15 CIECGKAFIQNTSLIRHWRYYHTGEKP 41
Score = 31.4 bits (72), Expect = 0.015
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K+F + SL +H R +H G P
Sbjct: 15 CIECGKAFIQNTSLIRHWRYYHTGEKP 41
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.012
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQP 82
C C K F R+ L H+R+ H++ +
Sbjct: 15 CNECGKGFGRRSHLAGHLRL-HSREKS 40
Score = 30.6 bits (70), Expect = 0.026
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K F R+ L H R+ H
Sbjct: 15 CNECGKGFGRRSHLAGHLRL-HSREKS 40
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 31.7 bits (73), Expect = 0.012
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQP 82
C C + FT K L +H RI HT +P
Sbjct: 15 CHECGRGFTLKSHLNQHQRI-HTGEKP 40
Score = 30.2 bits (69), Expect = 0.034
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHGGADP 132
+C C + FT K L +H RI H G P
Sbjct: 14 QCHECGRGFTLKSHLNQHQRI-HTGEKP 40
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.012
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C+ C K F RK +L H RI HT
Sbjct: 15 CSECGKAFARKSTLIMHQRI-HT 36
Score = 31.3 bits (72), Expect = 0.016
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K+F RK +L H RI H G P
Sbjct: 15 CSECGKAFARKSTLIMHQRI-HTGEKP 40
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 31.4 bits (72), Expect = 0.012
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQP 82
C C K+F +K SL H RI HT + P
Sbjct: 13 CQECGKSFRQKGSLTLHERI-HTGSGP 38
Score = 31.4 bits (72), Expect = 0.015
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C+ C KSF +K SL H RI H G+ P
Sbjct: 13 CQECGKSFRQKGSLTLHERI-HTGSGP 38
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.013
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C KTFT+ SL H RI HT
Sbjct: 15 CNECKKTFTQSSSLTVHQRI-HT 36
Score = 31.3 bits (72), Expect = 0.017
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K+FT+ SL H RI H G P
Sbjct: 15 CNECKKTFTQSSSLTVHQRI-HTGEKP 40
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.013
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
CT+C K FT + +L KH +I HT
Sbjct: 15 CTVCGKAFTDRSNLIKHQKI-HT 36
Score = 31.3 bits (72), Expect = 0.015
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C +C K+FT + +L KH +I H G P
Sbjct: 15 CTVCGKAFTDRSNLIKHQKI-HTGEKP 40
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.014
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
CE C K + R+ +L H R+ H G
Sbjct: 15 CEDCGKGYNRRLNLDMHQRV-HMGEKT 40
Score = 30.5 bits (70), Expect = 0.028
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K + R+ +L H R+ H
Sbjct: 15 CEDCGKGYNRRLNLDMHQRV-HM 36
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.016
Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K F+RK L H R H
Sbjct: 15 CHECGKAFSRKYQLISHQRT-HA 36
Score = 30.2 bits (69), Expect = 0.035
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K+F+RK L H R H G P
Sbjct: 15 CHECGKAFSRKYQLISHQRT-HAGEKP 40
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.016
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K F+ + SL H I HT
Sbjct: 15 CNQCGKAFSVRSSLTTHQAI-HT 36
Score = 30.6 bits (70), Expect = 0.032
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K+F+ + SL H I H G P
Sbjct: 15 CNQCGKAFSVRSSLTTHQAI-HTGKKP 40
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.017
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C+ C KSF+R L KH R+ H G P
Sbjct: 15 CKECGKSFSRAPCLLKHERL-HSGEKP 40
Score = 30.6 bits (70), Expect = 0.030
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K+F+R L KH R+ H+
Sbjct: 15 CKECGKSFSRAPCLLKHERL-HS 36
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.017
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQP 82
C +C K F L +H+R+ HTQ
Sbjct: 15 CNVCGKAFVLSAHLNQHLRV-HTQETL 40
Score = 29.8 bits (68), Expect = 0.051
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C +C K+F L +H R+ H
Sbjct: 15 CNVCGKAFVLSAHLNQHLRV-HTQETL 40
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 31.0 bits (71), Expect = 0.017
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C+ C KSF L KH R+ H G P
Sbjct: 15 CKECGKSFRWASCLLKHQRV-HSGEKP 40
Score = 30.6 bits (70), Expect = 0.027
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K+F L KH R+ H+
Sbjct: 15 CKECGKSFRWASCLLKHQRV-HS 36
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.3 bits (72), Expect = 0.017
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQP 82
C C K+F +K L +H RI HT +P
Sbjct: 15 CNECGKSFIQKSHLNRHRRI-HTGEKP 40
Score = 30.9 bits (71), Expect = 0.018
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C KSF +K L +H RI H G P
Sbjct: 15 CNECGKSFIQKSHLNRHRRI-HTGEKP 40
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.018
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C+ C K F +K +L H RI H
Sbjct: 15 CSECGKAFIQKSTLSMHQRI-HR 36
Score = 31.0 bits (71), Expect = 0.021
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K+F +K +L H RI H G P
Sbjct: 15 CSECGKAFIQKSTLSMHQRI-HRGEKP 40
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 31.0 bits (71), Expect = 0.019
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K FTR L +H +I HT
Sbjct: 15 CNECGKAFTRIFHLTRHQKI-HT 36
Score = 30.2 bits (69), Expect = 0.037
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHGG 129
C C K+FTR L +H +I H
Sbjct: 14 NCNECGKAFTRIFHLTRHQKI-HTR 37
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 30.9 bits (71), Expect = 0.020
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K+F+ L H RI HT
Sbjct: 15 CAECGKSFSISSQLATHQRI-HT 36
Score = 30.9 bits (71), Expect = 0.023
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C KSF+ L H RI H G P
Sbjct: 15 CAECGKSFSISSQLATHQRI-HTGEKP 40
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.021
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQP 82
C C KTF + L +H R+ HT +
Sbjct: 15 CKECRKTFIQIGHLNQHKRV-HTGERS 40
Score = 29.8 bits (68), Expect = 0.051
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C+ C K+F + L +H R+ H G
Sbjct: 15 CKECRKTFIQIGHLNQHKRV-HTGERS 40
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.021
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
CE C K+F L++H RI H G P
Sbjct: 15 CEECGKAFIHDSQLQEHQRI-HTGEKP 40
Score = 29.8 bits (68), Expect = 0.050
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K F L++H RI HT
Sbjct: 15 CEECGKAFIHDSQLQEHQRI-HT 36
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.9 bits (71), Expect = 0.022
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C +C K F+ SL +H R+ H+
Sbjct: 15 CDVCRKAFSHHASLTQHQRV-HS 36
Score = 30.2 bits (69), Expect = 0.036
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C++C K+F+ SL +H R+ H G P
Sbjct: 15 CDVCRKAFSHHASLTQHQRV-HSGEKP 40
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.0 bits (71), Expect = 0.022
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C +C K FT+K L +H + HT
Sbjct: 15 CKVCSKAFTQKAHLAQHQKT-HT 36
Score = 29.8 bits (68), Expect = 0.050
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C++C K+FT+K L +H + H G P
Sbjct: 15 CKVCSKAFTQKAHLAQHQKT-HTGEKP 40
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 32.2 bits (72), Expect = 0.022
Identities = 13/91 (14%), Positives = 28/91 (30%), Gaps = 3/91 (3%)
Query: 41 NRTSVGPVVPIDRIPCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNV---IEVALGARAN 97
+ PV + C LC+ + H R+ + ++ +
Sbjct: 4 GSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHES 63
Query: 98 AAFIDRIRCELCDKSFTRKDSLKKHNRIFHG 128
++ C C ++F S+ +H H
Sbjct: 64 KCEYKKLTCLECMRTFKSSFSIWRHQVEVHN 94
Score = 27.2 bits (59), Expect = 1.6
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 53 RIPCTLCDKTFTRKDSLKKHIRIFHTQN 80
++ C C +TF S+ +H H QN
Sbjct: 69 KLTCLECMRTFKSSFSIWRHQVEVHNQN 96
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.9 bits (71), Expect = 0.022
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K FT K +L H +I H G P
Sbjct: 15 CSECGKVFTHKTNLIIHQKI-HTGERP 40
Score = 30.5 bits (70), Expect = 0.029
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C+ C K FT K +L H +I HT
Sbjct: 15 CSECGKVFTHKTNLIIHQKI-HT 36
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.025
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQP 82
C C K FT+ L H R+ HT +P
Sbjct: 15 CEECGKRFTQNSHLHSHQRV-HTGEKP 40
Score = 30.6 bits (70), Expect = 0.027
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHGGADP 132
+CE C K FT+ L H R+ H G P
Sbjct: 14 QCEECGKRFTQNSHLHSHQRV-HTGEKP 40
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 30.6 bits (70), Expect = 0.026
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C+ C KTF+ K L H R HT
Sbjct: 15 CSQCAKTFSLKSQLIVHQRS-HT 36
Score = 29.4 bits (67), Expect = 0.062
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K+F+ K L H R H G P
Sbjct: 15 CSQCAKTFSLKSQLIVHQRS-HTGVKP 40
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 30.5 bits (70), Expect = 0.027
Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K F K +L H R HT
Sbjct: 15 CNECQKAFNTKSNLMVHQRT-HT 36
Score = 30.1 bits (69), Expect = 0.043
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K+F K +L H R H G
Sbjct: 15 CNECQKAFNTKSNLMVHQRT-HTGESG 40
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.027
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K+FT + +L KH +I H P
Sbjct: 15 CAECGKAFTIRSNLIKHQKI-HTKQKP 40
Score = 30.6 bits (70), Expect = 0.029
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K FT + +L KH +I HT
Sbjct: 15 CAECGKAFTIRSNLIKHQKI-HT 36
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.027
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHGGADP 132
+C++C K F++ L+ H R+ H G P
Sbjct: 14 KCDVCGKEFSQSSHLQTHQRV-HTGEKP 40
Score = 29.4 bits (67), Expect = 0.076
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQP 82
C +C K F++ L+ H R+ HT +P
Sbjct: 15 CDVCGKEFSQSSHLQTHQRV-HTGEKP 40
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.028
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQP 82
C+ C K+F+ L +H HT+ +P
Sbjct: 15 CSECGKSFSGSYRLTQHWIT-HTREKP 40
Score = 30.2 bits (69), Expect = 0.036
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C KSF+ L +H H P
Sbjct: 15 CSECGKSFSGSYRLTQHWIT-HTREKP 40
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 30.6 bits (70), Expect = 0.028
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHGGADP 132
RC C K F + + +H RI H G P
Sbjct: 14 RCSDCGKFFLQASNFIQHRRI-HTGEKP 40
Score = 29.4 bits (67), Expect = 0.073
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C+ C K F + + +H RI HT
Sbjct: 15 CSDCGKFFLQASNFIQHRRI-HT 36
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.030
Identities = 10/23 (43%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
CT C K F K L H R H
Sbjct: 15 CTECGKAFCWKSQLIMHQRT-HV 36
Score = 29.8 bits (68), Expect = 0.047
Identities = 9/27 (33%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K+F K L H R H
Sbjct: 15 CTECGKAFCWKSQLIMHQRT-HVDDKH 40
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.031
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C KSF + L +H RI H G P
Sbjct: 15 CNECGKSFIQSAHLIQHQRI-HTGEKP 40
Score = 29.8 bits (68), Expect = 0.047
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQP 82
C C K+F + L +H RI HT +P
Sbjct: 15 CNECGKSFIQSAHLIQHQRI-HTGEKP 40
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 30.2 bits (69), Expect = 0.033
Identities = 10/28 (35%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHGGADP 132
+CE C K F H R H G P
Sbjct: 14 KCEECGKGFYTNSQCYSHQRS-HSGEKP 40
Score = 29.1 bits (66), Expect = 0.11
Identities = 8/27 (29%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQP 82
C C K F H R H+ +P
Sbjct: 15 CEECGKGFYTNSQCYSHQRS-HSGEKP 40
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.034
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQP 82
C+ C K F+ K L H+R H+ +P
Sbjct: 15 CSECGKAFSSKSYLIIHMRT-HSGEKP 40
Score = 29.1 bits (66), Expect = 0.11
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K+F+ K L H R H G P
Sbjct: 15 CSECGKAFSSKSYLIIHMRT-HSGEKP 40
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 30.1 bits (69), Expect = 0.034
Identities = 10/23 (43%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K F K L H R HT
Sbjct: 15 CNECGKAFRSKSYLIIHTRT-HT 36
Score = 28.6 bits (65), Expect = 0.13
Identities = 10/27 (37%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K+F K L H R H G
Sbjct: 15 CNECGKAFRSKSYLIIHTRT-HTGESG 40
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.035
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K F +K +L +H RI HT
Sbjct: 15 CGECGKAFAQKANLTQHQRI-HT 36
Score = 30.2 bits (69), Expect = 0.038
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHGGADP 132
RC C K+F +K +L +H RI H G P
Sbjct: 14 RCGECGKAFAQKANLTQHQRI-HTGEKP 40
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.036
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C KTF++K L H R HT
Sbjct: 15 CNECGKTFSQKSILSAHQRT-HT 36
Score = 29.4 bits (67), Expect = 0.078
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K+F++K L H R H G P
Sbjct: 15 CNECGKTFSQKSILSAHQRT-HTGEKP 40
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.037
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHGGADP 132
+C C K+F R L +H RI H G P
Sbjct: 14 KCSECGKAFHRHTHLNEHRRI-HTGYRP 40
Score = 29.8 bits (68), Expect = 0.056
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C+ C K F R L +H RI HT
Sbjct: 15 CSECGKAFHRHTHLNEHRRI-HT 36
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 30.0 bits (68), Expect = 0.039
Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C +TF+ + L +H ++ HT
Sbjct: 13 CAECKETFSDNNRLVQHQKM-HT 34
Score = 27.7 bits (62), Expect = 0.29
Identities = 6/24 (25%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGG 129
C C ++F+ + L +H ++ H
Sbjct: 13 CAECKETFSDNNRLVQHQKM-HTV 35
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.040
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQP 82
C C K FT+ L H RI HT +P
Sbjct: 15 CNECGKVFTQNSHLANHQRI-HTGVKP 40
Score = 29.8 bits (68), Expect = 0.053
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K FT+ L H RI H G P
Sbjct: 15 CNECGKVFTQNSHLANHQRI-HTGVKP 40
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.040
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K F + L H+RI HT
Sbjct: 15 CKECGKAFRQNIHLASHLRI-HT 36
Score = 29.8 bits (68), Expect = 0.060
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C+ C K+F + L H RI H G P
Sbjct: 15 CKECGKAFRQNIHLASHLRI-HTGEKP 40
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.043
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K FT+ L H RI H G P
Sbjct: 15 CNECGKVFTQNSHLTNHWRI-HTGEKP 40
Score = 29.8 bits (68), Expect = 0.055
Identities = 11/23 (47%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K FT+ L H RI HT
Sbjct: 15 CNECGKVFTQNSHLTNHWRI-HT 36
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 30.2 bits (69), Expect = 0.044
Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K F + SL H H+
Sbjct: 15 CNECGKAFRARSSLAIHQAT-HS 36
Score = 29.8 bits (68), Expect = 0.059
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K+F + SL H H G P
Sbjct: 15 CNECGKAFRARSSLAIHQAT-HSGEKP 40
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 31.5 bits (70), Expect = 0.044
Identities = 17/78 (21%), Positives = 22/78 (28%), Gaps = 24/78 (30%)
Query: 53 RIPCTLCDKTFTRK--DSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCD 110
C C TRK LKKH+ + ++C+ C
Sbjct: 24 EAVCPTC-NVVTRKTLVGLKKHMEVCQKLQDA---------------------LKCQHCR 61
Query: 111 KSFTRKDSLKKHNRIFHG 128
K F K L H H
Sbjct: 62 KQFKSKAGLNYHTMAEHS 79
Score = 30.3 bits (67), Expect = 0.096
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 51 IDRIPCTLCDKTFTRKDSLKKHIRIFHTQNQP 82
D + C C K F K L H H+
Sbjct: 52 QDALKCQHCRKQFKSKAGLNYHTMAEHSAKPS 83
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.047
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C+ C K F K +L H R HT
Sbjct: 15 CSECQKAFNTKSNLIVHQRT-HT 36
Score = 29.4 bits (67), Expect = 0.068
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K+F K +L H R H G P
Sbjct: 15 CSECQKAFNTKSNLIVHQRT-HTGEKP 40
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.047
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQP 82
C C K F L +H RI HT +P
Sbjct: 15 CNECGKVFRHNSYLSRHQRI-HTGEKP 40
Score = 29.8 bits (68), Expect = 0.053
Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K F L +H RI H G P
Sbjct: 15 CNECGKVFRHNSYLSRHQRI-HTGEKP 40
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.048
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQP 82
C C K++ ++ L +H R+ HT +P
Sbjct: 15 CGECGKSYNQRVHLTQHQRV-HTGEKP 40
Score = 29.8 bits (68), Expect = 0.059
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C KS+ ++ L +H R+ H G P
Sbjct: 15 CGECGKSYNQRVHLTQHQRV-HTGEKP 40
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 32.9 bits (74), Expect = 0.049
Identities = 15/134 (11%), Positives = 34/134 (25%), Gaps = 23/134 (17%)
Query: 15 KKNSTSVENSTSVENSTSVENTSSVDNRTSVGPVVPIDRIPCTLCDKTFTRKDSLKKHIR 74
K + + T + N+ + + +VDN P+ ++ +
Sbjct: 115 KSKAQVTYSDTGINNANELSRSGNVDNEGGS-NQKPMSTRIAEATSAIVSKHPARVGLPP 173
Query: 75 IFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDSLKKHNRIFHGGADPKL 134
+ + Q C +C L H + L
Sbjct: 174 TASSGHGYQ----------------------CHVCSAVLFSPLDLDAHVASHGLHGNMTL 211
Query: 135 MDEQMARGSADFLE 148
++ R +F+
Sbjct: 212 TSSEIQRHITEFIS 225
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.9 bits (68), Expect = 0.049
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHGGADP 132
+C C K+F S +H R+ H G P
Sbjct: 14 KCMECGKAFGDNSSCTQHQRL-HTGQRP 40
Score = 29.1 bits (66), Expect = 0.11
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQP 82
C C K F S +H R+ HT +P
Sbjct: 15 CMECGKAFGDNSSCTQHQRL-HTGQRP 40
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.050
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K+F+ L +H RI H G P
Sbjct: 15 CIDCGKAFSDHIGLNQHRRI-HTGEKP 40
Score = 29.8 bits (68), Expect = 0.060
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K F+ L +H RI HT
Sbjct: 15 CIDCGKAFSDHIGLNQHRRI-HT 36
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.050
Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K F R L +H I HT
Sbjct: 15 CHECGKVFRRNSHLARHQLI-HT 36
Score = 29.4 bits (67), Expect = 0.068
Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K F R L +H I H G P
Sbjct: 15 CHECGKVFRRNSHLARHQLI-HTGEKP 40
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.050
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQP 82
C C K FT+ L +H R+ HT +P
Sbjct: 15 CNECGKVFTQNSHLARHRRV-HTGGKP 40
Score = 29.8 bits (68), Expect = 0.060
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K FT+ L +H R+ H G P
Sbjct: 15 CNECGKVFTQNSHLARHRRV-HTGGKP 40
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.051
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K+F+ L H RI HT
Sbjct: 15 CRECGKSFSFNSQLIVHQRI-HT 36
Score = 29.4 bits (67), Expect = 0.062
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C KSF+ L H RI H G +P
Sbjct: 15 CRECGKSFSFNSQLIVHQRI-HTGENP 40
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 29.8 bits (68), Expect = 0.052
Identities = 11/23 (47%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K F K SL H R HT
Sbjct: 15 CIECGKAFKTKSSLICHRRS-HT 36
Score = 29.4 bits (67), Expect = 0.067
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K+F K SL H R H G P
Sbjct: 15 CIECGKAFKTKSSLICHRRS-HTGEKP 40
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.052
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K FT+ L +H I H G P
Sbjct: 15 CNECGKVFTQNSHLARHRGI-HTGEKP 40
Score = 29.4 bits (67), Expect = 0.065
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K FT+ L +H I HT
Sbjct: 15 CNECGKVFTQNSHLARHRGI-HT 36
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.052
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C+ C K+F L +H RI H G P
Sbjct: 15 CDYCGKAFGLSAELVRHQRI-HTGEKP 40
Score = 29.0 bits (66), Expect = 0.087
Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K F L +H RI HT
Sbjct: 15 CDYCGKAFGLSAELVRHQRI-HT 36
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.056
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K+F++ L +H RI H G P
Sbjct: 15 CNECGKAFSQTSKLARHQRI-HTGEKP 40
Score = 29.4 bits (67), Expect = 0.066
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K F++ L +H RI HT
Sbjct: 15 CNECGKAFSQTSKLARHQRI-HT 36
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 29.9 bits (68), Expect = 0.056
Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGG 129
C+ C K+F +L+ H R+ H G
Sbjct: 15 CDECGKNFCYISALRIHQRV-HMG 37
Score = 28.7 bits (65), Expect = 0.12
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K F +L+ H R+ H
Sbjct: 15 CDECGKNFCYISALRIHQRV-HM 36
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 29.8 bits (68), Expect = 0.058
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K F+R L +H +I H G P
Sbjct: 15 CNECGKVFSRNSQLSQHQKI-HTGEKP 40
Score = 29.8 bits (68), Expect = 0.061
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQP 82
C C K F+R L +H +I HT +P
Sbjct: 15 CNECGKVFSRNSQLSQHQKI-HTGEKP 40
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.8 bits (68), Expect = 0.060
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K+F+ SL H I H G P
Sbjct: 15 CNECGKAFSVYSSLTTHQVI-HTGEKP 40
Score = 29.0 bits (66), Expect = 0.10
Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K F+ SL H I HT
Sbjct: 15 CNECGKAFSVYSSLTTHQVI-HT 36
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.065
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQP 82
C C K F++ L +H R+ HT +P
Sbjct: 15 CNECGKAFSQTSKLARHQRV-HTGEKP 40
Score = 29.4 bits (67), Expect = 0.072
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K+F++ L +H R+ H G P
Sbjct: 15 CNECGKAFSQTSKLARHQRV-HTGEKP 40
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.066
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C++C K+F L +H+ + H G P
Sbjct: 15 CQVCGKAFRVSSHLVQHHSV-HSGERP 40
Score = 29.4 bits (67), Expect = 0.081
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQP 82
C +C K F L +H + H+ +P
Sbjct: 15 CQVCGKAFRVSSHLVQHHSV-HSGERP 40
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.070
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHGGADP 132
+C C K+F +L H I H G P
Sbjct: 14 KCNECGKAFRAHSNLTTHQVI-HTGEKP 40
Score = 28.6 bits (65), Expect = 0.12
Identities = 9/23 (39%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K F +L H I HT
Sbjct: 15 CNECGKAFRAHSNLTTHQVI-HT 36
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.070
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K FT+ L +H I H G P
Sbjct: 15 CNECGKVFTQNSHLVRHRGI-HTGEKP 40
Score = 29.4 bits (67), Expect = 0.073
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K FT+ L +H I HT
Sbjct: 15 CNECGKVFTQNSHLVRHRGI-HT 36
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 29.4 bits (67), Expect = 0.070
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K F++ L +H R+ HT
Sbjct: 15 CKECGKAFSQTTHLIQHQRV-HT 36
Score = 29.4 bits (67), Expect = 0.084
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C+ C K+F++ L +H R+ H G P
Sbjct: 15 CKECGKAFSQTTHLIQHQRV-HTGEKP 40
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 29.4 bits (67), Expect = 0.071
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K FT+ L +H I H G P
Sbjct: 15 CNECGKVFTQNSHLARHRGI-HTGEKP 40
Score = 29.4 bits (67), Expect = 0.076
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K FT+ L +H I HT
Sbjct: 15 CNECGKVFTQNSHLARHRGI-HT 36
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 29.4 bits (67), Expect = 0.073
Identities = 9/23 (39%), Positives = 9/23 (39%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K F K L H R H
Sbjct: 15 CNECGKAFIWKSLLIVHERT-HA 36
Score = 29.0 bits (66), Expect = 0.091
Identities = 10/27 (37%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
C C K+F K L H R H G
Sbjct: 15 CNECGKAFIWKSLLIVHERT-HAGVSG 40
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 29.0 bits (64), Expect = 0.085
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 105 RCELCDKSFTRKDSLKKHNRI 125
+C LC++SF K +L +H R+
Sbjct: 3 KCGLCERSFVEKSALSRHQRV 23
Score = 26.3 bits (57), Expect = 0.83
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 56 CTLCDKTFTRKDSLKKHIRI 75
C LC+++F K +L +H R+
Sbjct: 4 CGLCERSFVEKSALSRHQRV 23
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 28.9 bits (64), Expect = 0.087
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 56 CTLCDKTFTRKDSLKKHIR 74
C C K F R D+L KHI+
Sbjct: 5 CPACPKRFMRSDALSKHIK 23
Score = 25.8 bits (56), Expect = 1.2
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 106 CELCDKSFTRKDSLKKH 122
C C K F R D+L KH
Sbjct: 5 CPACPKRFMRSDALSKH 21
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 30.2 bits (67), Expect = 0.091
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 52 DRIPCTLCDKTFTRKDSLKKHIRIFHT 78
+ C C K +K H+ H
Sbjct: 61 EMFTCHHCGKQLRSLAGMKYHVMANHN 87
Score = 28.3 bits (62), Expect = 0.53
Identities = 6/27 (22%), Positives = 8/27 (29%)
Query: 102 DRIRCELCDKSFTRKDSLKKHNRIFHG 128
+ C C K +K H H
Sbjct: 61 EMFTCHHCGKQLRSLAGMKYHVMANHN 87
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 31.7 bits (71), Expect = 0.13
Identities = 21/137 (15%), Positives = 42/137 (30%), Gaps = 21/137 (15%)
Query: 13 SGKKNSTSVENSTSVENSTSVENTSSVDNRTSVGPVVPIDRIPCTLCDKTFTRKDSLKKH 72
+ ++ + V + + +SSV+N + P T ++
Sbjct: 46 ANQQQAGIVSSQSGPNAVGDSAPSSSVNNDGDI-ITRP-----------TSDSIAAVANA 93
Query: 73 IRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDSLKKHNRIFHG-GAD 131
+ + PQ V + + C +C+ F+ +L +H R H A
Sbjct: 94 TKPAAVVSDPQSMKVTPIVNPSS--------YVCNVCNARFSTMSALSEHLRSDHRDDAS 145
Query: 132 PKLMDEQMARGSADFLE 148
L + FL
Sbjct: 146 TLLATPMINNAIRSFLT 162
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 28.7 bits (64), Expect = 0.13
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 55 PCTL--CDKTFTRKDSLKKHIRIFHTQN 80
C C KTF R+ +++ HI+ H ++
Sbjct: 20 ECLFPGCTKTFKRRYNIRSHIQT-HLED 46
Score = 24.4 bits (53), Expect = 4.6
Identities = 5/14 (35%), Positives = 10/14 (71%)
Query: 109 CDKSFTRKDSLKKH 122
C K+F R+ +++ H
Sbjct: 26 CTKTFKRRYNIRSH 39
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.15
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 11/35 (31%)
Query: 66 KDSLKK---HIRIFHTQNQPQHTNVIEVALGARAN 97
K +LKK ++++ + P AL +A
Sbjct: 19 KQALKKLQASLKLYADDSAP--------ALAIKAT 45
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 28.3 bits (62), Expect = 0.15
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQ 81
C C+K F K SL+ H+RI HT +
Sbjct: 12 CEYCNKVFKFKHSLQAHLRI-HTNEK 36
Score = 27.9 bits (61), Expect = 0.22
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 106 CELCDKSFTRKDSLKKHNRI 125
CE C+K F K SL+ H RI
Sbjct: 12 CEYCNKVFKFKHSLQAHLRI 31
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 28.7 bits (63), Expect = 0.16
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHGG 129
C +C F RKD + H R G
Sbjct: 12 SCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 27.6 bits (60), Expect = 0.42
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 55 PCTLCDKTFTRKDSLKKHIRIFHTQNQ 81
C +C F RKD + H+R
Sbjct: 12 SCPVCGLRFKRKDRMSYHVRSHDGSVG 38
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 27.7 bits (62), Expect = 0.28
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 59 CDKTFTRKDSLKKHIRIFHT 78
C K + + L+ H+R HT
Sbjct: 16 CGKVYGKTSHLRAHLRW-HT 34
Score = 25.0 bits (55), Expect = 2.6
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 1/21 (4%)
Query: 109 CDKSFTRKDSLKKHNRIFHGG 129
C K + + L+ H R H G
Sbjct: 16 CGKVYGKTSHLRAHLRW-HTG 35
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 28.4 bits (62), Expect = 0.62
Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 11/78 (14%)
Query: 56 CTLCDKTFTRKDSLKKH---------IRIFHTQNQPQHTNVIEVALGARANAAFIDRIR- 105
C +C + H +R + NQ + + + A A + +
Sbjct: 35 CKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPAEISDGEDRSK 94
Query: 106 -CELCDKSFTRKDSLKKH 122
C +C+ +F+ + H
Sbjct: 95 CCPVCNMTFSSPVVAESH 112
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 26.5 bits (58), Expect = 0.66
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 109 CDKSFTRKDSLKKHNRI 125
CDK+F R L +H +
Sbjct: 11 CDKAFVRNHDLIRHKKS 27
Score = 25.7 bits (56), Expect = 1.4
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 59 CDKTFTRKDSLKKHIRIFHTQN 80
CDK F R L +H + H +
Sbjct: 11 CDKAFVRNHDLIRHKKS-HQEK 31
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 66
Score = 27.1 bits (59), Expect = 0.70
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 54 IPCTLCDKTFTRKDSLKKH 72
+PC LC K FT + L++H
Sbjct: 14 LPCGLCGKVFTDANRLRQH 32
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 25.5 bits (55), Expect = 1.4
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C + F +L++H+RI HT
Sbjct: 6 CIHCQRQFADPGALQRHVRI-HT 27
Score = 25.1 bits (54), Expect = 2.4
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHG 128
C C + F +L++H RI G
Sbjct: 6 CIHCQRQFADPGALQRHVRIHTG 28
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 29
Score = 25.1 bits (54), Expect = 1.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 56 CTLCDKTFTRKDSLKKHIR 74
C +C K FT+ SL H+R
Sbjct: 5 CVMCGKAFTQASSLIAHVR 23
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with
ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3
d.122.1.2
Length = 390
Score = 27.4 bits (62), Expect = 2.2
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 6/29 (20%)
Query: 136 DEQMARGSADFLEVVLNEDGEGEPVSITV 164
DE +A G A ++V+L+ D S+ V
Sbjct: 45 DEALA-GHAKRVDVILHADQ-----SLEV 67
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI
topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB:
3lps_A*
Length = 408
Score = 27.5 bits (62), Expect = 2.5
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 6/29 (20%)
Query: 136 DEQMARGSADFLEVVLNEDGEGEPVSITV 164
DE +A G A +EV L +DG S V
Sbjct: 64 DEALA-GHAKQIEVTLYKDG-----SCEV 86
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus
musculus} SCOP: g.37.1.5
Length = 121
Score = 26.1 bits (57), Expect = 3.7
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 54 IPCTLCDKTFTRKDSLKKHIRIFH 77
PC CD+ F + H ++ H
Sbjct: 16 TPCLFCDRLFASAEETFSHCKLEH 39
Score = 24.9 bits (54), Expect = 9.9
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 104 IRCELCDKSFTRKDSLKKHNRIFHG 128
C CD+ F + H ++ H
Sbjct: 16 TPCLFCDRLFASAEETFSHCKLEHQ 40
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 26.7 bits (58), Expect = 3.8
Identities = 6/50 (12%), Positives = 22/50 (44%)
Query: 73 IRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDSLKKH 122
+R++++++ + + + R A R++ E ++ + L+
Sbjct: 178 LRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGP 227
Score = 25.9 bits (56), Expect = 7.4
Identities = 4/29 (13%), Positives = 9/29 (31%), Gaps = 1/29 (3%)
Query: 53 RIPCTLCDKTFTRKDSLKKHIRIFHTQNQ 81
R+ ++ + L+ I Q
Sbjct: 208 RLQREKSEQVLDNPEDLRGPIH-LSVLRQ 235
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex,
antibiotic resistance, ATP-binding, nucleotide-binding;
HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A*
Length = 201
Score = 26.3 bits (59), Expect = 4.1
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 6/29 (20%)
Query: 136 DEQMARGSADFLEVVLNEDGEGEPVSITV 164
DE +A G A ++V+L+ D S+ V
Sbjct: 31 DEALA-GHAKRVDVILHADQ-----SLEV 53
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 24.0 bits (51), Expect = 5.6
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQN 80
C +C K F K +LK H ++ HT +
Sbjct: 12 CDMCGKKFKSKGTLKSH-KLLHTAD 35
Score = 23.2 bits (49), Expect = 9.6
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 106 CELCDKSFTRKDSLKKHNRIFH 127
C++C K F K +LK H ++ H
Sbjct: 12 CDMCGKKFKSKGTLKSH-KLLH 32
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 23.6 bits (50), Expect = 7.8
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHG 128
C CD F+ + SLK+H H
Sbjct: 13 CNECDCRFSEEASLKRHTLQTHS 35
Score = 23.6 bits (50), Expect = 7.9
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C CD F+ + SLK+H H+
Sbjct: 13 CNECDCRFSEEASLKRHTLQTHS 35
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 23.2 bits (49), Expect = 9.9
Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C +C FT K + +H+++ HT
Sbjct: 10 CRICLSAFTTKANCARHLKV-HT 31
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 25.0 bits (54), Expect = 9.9
Identities = 11/69 (15%), Positives = 20/69 (28%), Gaps = 24/69 (34%)
Query: 54 IPCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSF 113
+ C C + F + + HI + Q + C+ C S
Sbjct: 111 MDCPQCQRPFQKFH-INIHILKDCPRRQ----------------------VSCDNCAASM 147
Query: 114 TRKDSLKKH 122
+D + H
Sbjct: 148 AFED-KEIH 155
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.130 0.369
Gapped
Lambda K H
0.267 0.0478 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,354,414
Number of extensions: 127163
Number of successful extensions: 783
Number of sequences better than 10.0: 1
Number of HSP's gapped: 742
Number of HSP's successfully gapped: 414
Length of query: 167
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 80
Effective length of database: 4,272,666
Effective search space: 341813280
Effective search space used: 341813280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.2 bits)