RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8167
(167 letters)
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 47.0 bits (111), Expect = 1e-08
Identities = 14/67 (20%), Positives = 20/67 (29%), Gaps = 22/67 (32%)
Query: 59 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDS 118
C K+FT K +H+ + C +C K F K
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYG----------------------CGVCGKKFKMKHH 45
Query: 119 LKKHNRI 125
L H +I
Sbjct: 46 LVGHMKI 52
Score = 34.7 bits (79), Expect = 4e-04
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 56 CTLCDKTFTRKDSLKKHIRI 75
C +C K F K L H++I
Sbjct: 33 CGVCGKKFKMKHHLVGHMKI 52
Score = 30.4 bits (68), Expect = 0.012
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHGGADPK 133
C+ C KSFT K +H + G
Sbjct: 5 PCQ-CGKSFTHKSQRDRHMSMHLGLRPYG 32
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 38.4 bits (90), Expect = 1e-05
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQN 80
C +C FT+ ++K HI HT+N
Sbjct: 11 CYICHARFTQSGTMKMHILQKHTEN 35
Score = 36.1 bits (84), Expect = 7e-05
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHGG 129
C +C FT+ ++K H H
Sbjct: 10 ECYICHARFTQSGTMKMHILQKHTE 34
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 38.1 bits (89), Expect = 1e-05
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQNQP 82
C C K F+R D L HI+ HT +P
Sbjct: 8 CQSCGKGFSRPDHLNGHIKQVHTSERP 34
Score = 37.3 bits (87), Expect = 3e-05
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHGGADP 132
C+ C K F+R D L H + H P
Sbjct: 7 ICQSCGKGFSRPDHLNGHIKQVHTSERP 34
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 37.2 bits (87), Expect = 3e-05
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C +C + F R++ LK+H R HT
Sbjct: 5 CEVCTRAFARQEHLKRHYRS-HT 26
Score = 35.7 bits (83), Expect = 9e-05
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHGG 129
CE+C ++F R++ LK+H R H
Sbjct: 4 VCEVCTRAFARQEHLKRHYRS-HTN 27
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 36.8 bits (86), Expect = 4e-05
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C +C + F+R D L HIR HT
Sbjct: 6 CRICMRNFSRSDHLTTHIRT-HT 27
Score = 35.7 bits (83), Expect = 1e-04
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHGG 129
+C +C ++F+R D L H R H G
Sbjct: 5 QCRICMRNFSRSDHLTTHIRT-HTG 28
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 36.1 bits (84), Expect = 8e-05
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K F+R L +H R+ HT
Sbjct: 10 CVECGKAFSRSSILVQHQRV-HT 31
Score = 35.3 bits (82), Expect = 2e-04
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHGG 129
C C K+F+R L +H R+ H G
Sbjct: 9 GCVECGKAFSRSSILVQHQRV-HTG 32
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 35.8 bits (83), Expect = 9e-05
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHTQN 80
C+ CDKTF +K L H + +H N
Sbjct: 11 CSHCDKTFRQKQLLDMHFKRYHDPN 35
Score = 35.8 bits (83), Expect = 1e-04
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHG 128
C CDK+F +K L H + +H
Sbjct: 10 ACSHCDKTFRQKQLLDMHFKRYHD 33
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 35.4 bits (82), Expect = 1e-04
Identities = 11/23 (47%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K F R D L KHI+ H
Sbjct: 5 CPECPKRFMRSDHLSKHIKT-HQ 26
Score = 33.9 bits (78), Expect = 4e-04
Identities = 10/25 (40%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHGG 129
C C K F R D L KH + H
Sbjct: 4 ACPECPKRFMRSDHLSKHIKT-HQN 27
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 34.7 bits (80), Expect = 2e-04
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 55 PCTLCDKTFTRKDSLKKHIRIFHTQNQP 82
P C K+F K LK+H+++ H+ +
Sbjct: 5 PEPACGKSFNFKKHLKEHMKL-HSDTRD 31
Score = 32.4 bits (74), Expect = 0.002
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHG 128
C KSF K LK+H ++
Sbjct: 6 EPACGKSFNFKKHLKEHMKLHSD 28
>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger
peptide) {Drosophila melanogaster [TaxId: 7227]}
Length = 26
Score = 34.6 bits (79), Expect = 3e-04
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 55 PCTLCDKTFTRKDSLKKHIRIFH 77
PC C K FTRKD++ H++I H
Sbjct: 3 PCPFCFKEFTRKDNMTAHVKIIH 25
Score = 29.6 bits (66), Expect = 0.016
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 106 CELCDKSFTRKDSLKKHNRIFH 127
C C K FTRKD++ H +I H
Sbjct: 4 CPFCFKEFTRKDNMTAHVKIIH 25
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 33.8 bits (78), Expect = 5e-04
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 59 CDKTFTRKDSLKKHIRIFHT 78
C K FTR D L++H R HT
Sbjct: 10 CGKRFTRSDELQRHKRT-HT 28
Score = 31.5 bits (72), Expect = 0.003
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGG 129
C K FTR D L++H R H G
Sbjct: 7 WSYCGKRFTRSDELQRHKRT-HTG 29
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 30
Score = 33.8 bits (78), Expect = 5e-04
Identities = 9/20 (45%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 59 CDKTFTRKDSLKKHIRIFHT 78
C K+++R ++LK H+R HT
Sbjct: 10 CRKSYSRLENLKTHLRS-HT 28
Score = 31.9 bits (73), Expect = 0.003
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 107 ELCDKSFTRKDSLKKHNRIFHGG 129
E C KS++R ++LK H R H G
Sbjct: 8 EGCRKSYSRLENLKTHLRS-HTG 29
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 33.4 bits (77), Expect = 6e-04
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 59 CDKTFTRKDSLKKHIRIFHT 78
CD+ F+R L +HIRI HT
Sbjct: 10 CDRRFSRSADLTRHIRI-HT 28
Score = 31.9 bits (73), Expect = 0.002
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 107 ELCDKSFTRKDSLKKHNRIFHGG 129
E CD+ F+R L +H RI H G
Sbjct: 8 ESCDRRFSRSADLTRHIRI-HTG 29
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 33.5 bits (77), Expect = 8e-04
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 59 CDKTFTRKDSLKKHIRIFHTQ 79
CDK F R L +H + H +
Sbjct: 11 CDKAFVRNHDLIRHKKS-HQE 30
Score = 31.5 bits (72), Expect = 0.004
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 107 ELCDKSFTRKDSLKKHNRI 125
CDK+F R L +H +
Sbjct: 9 PGCDKAFVRNHDLIRHKKS 27
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 32.7 bits (74), Expect = 0.001
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHG 128
+CE+C K F+RKD LK H R G
Sbjct: 3 KCEVCGKCFSRKDKLKTHMRCHTG 26
Score = 31.2 bits (70), Expect = 0.005
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 56 CTLCDKTFTRKDSLKKHIR 74
C +C K F+RKD LK H+R
Sbjct: 4 CEVCGKCFSRKDKLKTHMR 22
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 32.7 bits (75), Expect = 0.001
Identities = 8/20 (40%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 59 CDKTFTRKDSLKKHIRIFHT 78
C+K F + +LK HI H
Sbjct: 10 CNKKFAQSTNLKSHILT-HA 28
Score = 30.4 bits (69), Expect = 0.010
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 109 CDKSFTRKDSLKKHNRI 125
C+K F + +LK H
Sbjct: 10 CNKKFAQSTNLKSHILT 26
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 35
Score = 32.8 bits (75), Expect = 0.001
Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C +C FT K + +H+++ HT
Sbjct: 10 CRICLSAFTTKANCARHLKV-HT 31
Score = 31.3 bits (71), Expect = 0.004
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 106 CELCDKSFTRKDSLKKHNRI 125
C +C +FT K + +H ++
Sbjct: 10 CRICLSAFTTKANCARHLKV 29
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 32.2 bits (74), Expect = 0.002
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K F++ L H RI HT
Sbjct: 5 CLECGKAFSQNSGLINHQRI-HT 26
Score = 31.8 bits (73), Expect = 0.003
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 106 CELCDKSFTRKDSLKKHNRI 125
C C K+F++ L H RI
Sbjct: 5 CLECGKAFSQNSGLINHQRI 24
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger
domain) {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 31.2 bits (71), Expect = 0.005
Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 59 CDKTFTRKDSLKKHIRIFHT 78
C K F+ +L+ H+RI HT
Sbjct: 10 CGKRFSLDFNLRTHVRI-HT 28
Score = 30.4 bits (69), Expect = 0.009
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 107 ELCDKSFTRKDSLKKHNRIFHGG 129
E C K F+ +L+ H RI H G
Sbjct: 8 EGCGKRFSLDFNLRTHVRI-HTG 29
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 30.9 bits (70), Expect = 0.006
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGG 129
C LC+++FTR+D L +H + H G
Sbjct: 4 CGLCNRAFTRRDLLIRHAQKIHSG 27
Score = 28.2 bits (63), Expect = 0.055
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 55 PCTLCDKTFTRKDSLKKHIRIFHTQN 80
PC LC++ FTR+D L +H + H+ N
Sbjct: 3 PCGLCNRAFTRRDLLIRHAQKIHSGN 28
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 30.9 bits (70), Expect = 0.006
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 105 RCELCDKSFTRKDSLKKHNRI 125
+C CD+SF+R D L H +
Sbjct: 13 QCPDCDRSFSRSDHLALHRKR 33
Score = 30.9 bits (70), Expect = 0.008
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 56 CTLCDKTFTRKDSLKKHIRI 75
C CD++F+R D L H +
Sbjct: 14 CPDCDRSFSRSDHLALHRKR 33
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 29
Score = 28.7 bits (64), Expect = 0.036
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 109 CDKSFTRKDSLKKHNRIFHG 128
C K +T SL+KH + HG
Sbjct: 10 CTKRYTDPSSLRKHVKTVHG 29
Score = 27.5 bits (61), Expect = 0.11
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 59 CDKTFTRKDSLKKHIRIFH 77
C K +T SL+KH++ H
Sbjct: 10 CTKRYTDPSSLRKHVKTVH 28
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId:
8355]}
Length = 26
Score = 28.6 bits (63), Expect = 0.040
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 105 RCELCDKSFTRKDSLKKHNRI 125
+C LC++SF K +L +H R+
Sbjct: 2 KCGLCERSFVEKSALSRHQRV 22
Score = 25.9 bits (56), Expect = 0.38
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 56 CTLCDKTFTRKDSLKKHIRI 75
C LC+++F K +L +H R+
Sbjct: 3 CGLCERSFVEKSALSRHQRV 22
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId:
9606]}
Length = 38
Score = 28.6 bits (64), Expect = 0.045
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C C K+F+ L KH R HT
Sbjct: 15 CDECGKSFSHSSDLSKHRRT-HT 36
Score = 27.8 bits (62), Expect = 0.10
Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGG 129
C+ C KSF+ L KH R H G
Sbjct: 15 CDECGKSFSHSSDLSKHRRT-HTG 37
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 28.2 bits (63), Expect = 0.053
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 106 CELCDKSFTRKDSLKKHNRI 125
C++C + F R D K+H +I
Sbjct: 6 CDICGRKFARSDERKRHTKI 25
Score = 26.7 bits (59), Expect = 0.17
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 56 CTLCDKTFTRKDSLKKHIRI 75
C +C + F R D K+H +I
Sbjct: 6 CDICGRKFARSDERKRHTKI 25
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 27
Score = 27.4 bits (60), Expect = 0.12
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 104 IRCELCDKSFTRKDSLKKHNR 124
+ C C K F K LK HNR
Sbjct: 1 VECPTCHKKFLSKYYLKVHNR 21
Score = 23.5 bits (50), Expect = 2.5
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 54 IPCTLCDKTFTRKDSLKKHIR 74
+ C C K F K LK H R
Sbjct: 1 VECPTCHKKFLSKYYLKVHNR 21
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 53
Score = 27.6 bits (61), Expect = 0.12
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 54 IPCTLCDKTFTRKDSLKKH 72
+PC LC K FT + L++H
Sbjct: 7 LPCGLCGKVFTDANRLRQH 25
Score = 24.6 bits (53), Expect = 1.9
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 106 CELCDKSFTRKDSLKKH 122
C LC K FT + L++H
Sbjct: 9 CGLCGKVFTDANRLRQH 25
>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 37
Score = 26.2 bits (57), Expect = 0.32
Identities = 8/17 (47%), Positives = 14/17 (82%)
Query: 56 CTLCDKTFTRKDSLKKH 72
C+ C KTFTR++++ +H
Sbjct: 7 CSKCGKTFTRRNTMARH 23
Score = 23.5 bits (50), Expect = 2.7
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 106 CELCDKSFTRKDSLKKH 122
C C K+FTR++++ +H
Sbjct: 7 CSKCGKTFTRRNTMARH 23
>d1wira_ g.37.1.5 (A:) Protein arginine N-methyltransferase 3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 121
Score = 26.7 bits (59), Expect = 0.73
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 53 RIPCTLCDKTFTRKDSLKKHIRIFH 77
PC CD+ F + H ++ H
Sbjct: 15 HTPCLFCDRLFASAEETFSHCKLEH 39
Score = 24.8 bits (54), Expect = 3.6
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 103 RIRCELCDKSFTRKDSLKKHNRIFHG 128
C CD+ F + H ++ H
Sbjct: 15 HTPCLFCDRLFASAEETFSHCKLEHQ 40
>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 31
Score = 25.0 bits (54), Expect = 0.73
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 59 CDKTFTRKDSLKKHIRIFH 77
CD FT K ++KKH FH
Sbjct: 10 CDLRFTTKANMKKHFNRFH 28
Score = 23.1 bits (49), Expect = 3.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 109 CDKSFTRKDSLKKHNRIFH 127
CD FT K ++KKH FH
Sbjct: 10 CDLRFTTKANMKKHFNRFH 28
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 25.0 bits (54), Expect = 0.82
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGG 129
C +C F RKD + H R G
Sbjct: 6 CPVCGLRFKRKDRMSYHVRSHDGS 29
Score = 25.0 bits (54), Expect = 0.87
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 56 CTLCDKTFTRKDSLKKHIR 74
C +C F RKD + H+R
Sbjct: 6 CPVCGLRFKRKDRMSYHVR 24
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 25.3 bits (55), Expect = 0.84
Identities = 8/65 (12%), Positives = 21/65 (32%), Gaps = 22/65 (33%)
Query: 65 RKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDSLKKHNR 124
+ S+ K+++ ++ C K+F R+ +++ H +
Sbjct: 3 PRGSIDKYVK--EMPDKTFECL-------------------FPGCTKTFKRRYNIRSHIQ 41
Query: 125 IFHGG 129
H
Sbjct: 42 T-HLE 45
Score = 24.9 bits (54), Expect = 1.3
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 59 CDKTFTRKDSLKKHIRIFHT 78
C KTF R+ +++ HI+ H
Sbjct: 26 CTKTFKRRYNIRSHIQT-HL 44
>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 24.7 bits (53), Expect = 1.1
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 105 RCELCDKSFTRKDSLKKHNRI 125
+C+ CD + SL KH RI
Sbjct: 5 KCKTCDYAAADSSSLNKHLRI 25
Score = 23.6 bits (50), Expect = 2.4
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 56 CTLCDKTFTRKDSLKKHIRI 75
C CD SL KH+RI
Sbjct: 6 CKTCDYAAADSSSLNKHLRI 25
>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4
{Human (Homo sapiens) [TaxId: 9606]}
Length = 48
Score = 24.8 bits (54), Expect = 1.1
Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 46 GPVVPIDRIPCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGAR 95
G CTLC ++ + S++ HI ++ QH + + +G++
Sbjct: 1 GTDGTKPE--CTLCGVKYSARLSIRDHI---FSK---QHISKVRETVGSQ 42
>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 23.9 bits (51), Expect = 2.1
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C CD RK L H+R H+
Sbjct: 5 CPHCDTVIARKSDLGVHLRKQHS 27
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 23.9 bits (52), Expect = 3.9
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 56 CTLCDKTFTRKDSLKKHIR 74
C C + F +LK H R
Sbjct: 18 CLACARYFIDSTNLKTHFR 36
Score = 23.5 bits (51), Expect = 5.0
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 106 CELCDKSFTRKDSLKKHNR 124
C C + F +LK H R
Sbjct: 18 CLACARYFIDSTNLKTHFR 36
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 23.0 bits (49), Expect = 4.0
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 105 RCELCDKSFTRKDSLKKHNRIFHG 128
+C C + +L KH + FHG
Sbjct: 4 KCNYCSFDTKQPSNLSKHMKKFHG 27
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 23.1 bits (49), Expect = 4.7
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHGGADP 132
CE+C K F L +H ++ H G P
Sbjct: 8 CEICGKIFRDVYHLNRH-KLSHSGEKP 33
>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 29
Score = 22.7 bits (48), Expect = 4.9
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 107 ELCDKSFTRKDSLKKHNRI 125
E CDK F+ LK+H ++
Sbjct: 9 EGCDKRFSLPSRLKRHEKV 27
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 30
Score = 22.8 bits (48), Expect = 5.1
Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 56 CTLCDKTFTRKDSLKKHIRIFHT 78
C++C +TF R+ L+ H+ + HT
Sbjct: 7 CSVCQETFRRRMELRLHM-VSHT 28
>d1fnfa1 b.1.2.1 (A:1142-1235) Fibronectin, different Fn3 modules
{Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 24.0 bits (51), Expect = 5.4
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 151 LNEDGEGEPVSITV 164
+ +D E P+S T+
Sbjct: 78 VKDDKESVPISDTI 91
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 22.3 bits (47), Expect = 8.1
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 106 CELCDKSFTRKDSLKKHNRIFHG 128
C C K+F LK+H + G
Sbjct: 5 CAECGKAFVESSKLKRHQLVHTG 27
>d2fzcb2 g.41.7.1 (B:101-153) Aspartate carbamoyltransferase,
Regulatory-chain, C-terminal domain {Escherichia coli
[TaxId: 562]}
Length = 53
Score = 22.7 bits (49), Expect = 8.1
Identities = 4/15 (26%), Positives = 9/15 (60%)
Query: 103 RIRCELCDKSFTRKD 117
++C+ C+K F+
Sbjct: 35 ALKCKYCEKEFSHNV 49
>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 44
Score = 22.4 bits (47), Expect = 8.3
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 56 CTLCDKTFTRKDSLKKHI 73
C +C K F +DS +H+
Sbjct: 8 CNICAKRFMWRDSFHRHV 25
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.130 0.369
Gapped
Lambda K H
0.267 0.0611 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 568,564
Number of extensions: 23761
Number of successful extensions: 162
Number of sequences better than 10.0: 1
Number of HSP's gapped: 161
Number of HSP's successfully gapped: 86
Length of query: 167
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,322,926
Effective search space: 116417488
Effective search space used: 116417488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (22.9 bits)