Query psy8169
Match_columns 843
No_of_seqs 384 out of 3244
Neff 11.4
Searched_HMMs 46136
Date Fri Aug 16 20:20:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8169.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8169hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1074|consensus 100.0 8.2E-31 1.8E-35 266.5 7.2 294 275-738 605-933 (958)
2 KOG1074|consensus 100.0 1.9E-29 4.2E-34 256.7 8.2 115 181-329 605-735 (958)
3 KOG3608|consensus 99.9 1.8E-27 3.9E-32 216.9 14.3 315 23-535 32-382 (467)
4 KOG3608|consensus 99.9 4.8E-27 1E-31 214.1 15.1 232 244-741 137-381 (467)
5 KOG2462|consensus 99.9 4.2E-26 9.1E-31 203.6 6.8 137 505-797 130-266 (279)
6 KOG3623|consensus 99.9 8.3E-24 1.8E-28 211.6 16.4 108 124-234 210-331 (1007)
7 KOG2462|consensus 99.9 2.8E-24 6.2E-29 192.0 6.1 139 443-734 127-265 (279)
8 KOG3623|consensus 99.8 5.3E-21 1.1E-25 191.8 7.3 108 17-145 210-330 (1007)
9 KOG3576|consensus 99.6 1E-16 2.2E-21 134.9 3.0 82 46-148 116-197 (267)
10 KOG3576|consensus 99.6 3.6E-16 7.8E-21 131.7 2.9 127 151-304 114-241 (267)
11 KOG1146|consensus 99.2 4.8E-11 1E-15 130.8 9.7 123 664-805 1230-1359(1406)
12 PLN03086 PRLI-interacting fact 99.1 1.1E-10 2.3E-15 120.7 6.1 78 663-800 479-566 (567)
13 KOG1146|consensus 99.1 1.8E-10 3.9E-15 126.4 6.4 86 12-97 460-610 (1406)
14 PLN03086 PRLI-interacting fact 99.0 5.5E-10 1.2E-14 115.5 9.0 144 48-236 408-564 (567)
15 KOG3993|consensus 99.0 3.3E-10 7.1E-15 108.0 5.0 112 446-591 267-383 (500)
16 PHA00733 hypothetical protein 98.9 2.8E-10 6.1E-15 94.7 2.0 84 661-801 39-126 (128)
17 PHA00733 hypothetical protein 98.8 4.8E-09 1E-13 87.4 4.7 52 180-236 72-123 (128)
18 PHA02768 hypothetical protein; 98.8 3.2E-09 7E-14 70.5 1.6 43 17-63 5-47 (55)
19 KOG3993|consensus 98.6 3E-09 6.5E-14 101.6 -1.4 112 122-236 354-482 (500)
20 PHA02768 hypothetical protein; 98.6 1.7E-08 3.6E-13 67.2 1.9 44 275-320 5-48 (55)
21 PF13465 zf-H2C2_2: Zinc-finge 98.4 2E-07 4.4E-12 52.8 2.4 26 290-315 1-26 (26)
22 PF13465 zf-H2C2_2: Zinc-finge 98.4 1.8E-07 3.9E-12 53.0 1.6 24 33-58 2-25 (26)
23 PF05605 zf-Di19: Drought indu 98.3 9.4E-07 2E-11 61.2 4.2 53 124-179 2-54 (54)
24 PF05605 zf-Di19: Drought indu 98.3 7.4E-07 1.6E-11 61.7 3.4 52 663-737 3-54 (54)
25 PHA00732 hypothetical protein 98.2 4.2E-07 9.1E-12 67.7 1.1 46 713-797 2-47 (79)
26 PHA00616 hypothetical protein 98.2 1E-06 2.2E-11 55.6 2.1 35 17-53 1-35 (44)
27 PHA00732 hypothetical protein 98.1 1.7E-06 3.6E-11 64.6 2.4 44 17-68 1-45 (79)
28 PHA00616 hypothetical protein 98.1 2.2E-06 4.9E-11 54.1 1.9 39 275-313 1-39 (44)
29 PF00096 zf-C2H2: Zinc finger, 97.8 1E-05 2.3E-10 44.6 1.6 23 18-40 1-23 (23)
30 PF00096 zf-C2H2: Zinc finger, 97.8 7.8E-06 1.7E-10 45.1 0.6 22 775-796 1-22 (23)
31 PF13894 zf-C2H2_4: C2H2-type 97.7 1.4E-05 3E-10 44.9 0.7 24 775-798 1-24 (24)
32 KOG2231|consensus 97.6 0.00013 2.8E-09 77.3 6.7 97 193-299 161-263 (669)
33 PF12756 zf-C2H2_2: C2H2 type 97.6 2.1E-05 4.6E-10 64.3 0.7 73 664-736 1-74 (100)
34 PF13894 zf-C2H2_4: C2H2-type 97.4 4E-05 8.7E-10 43.0 0.6 24 713-736 1-24 (24)
35 PF12756 zf-C2H2_2: C2H2 type 97.4 6.4E-05 1.4E-09 61.4 1.8 72 127-204 2-73 (100)
36 COG5189 SFP1 Putative transcri 97.4 5E-05 1.1E-09 70.3 0.7 71 74-145 347-419 (423)
37 KOG2231|consensus 97.3 0.00044 9.5E-09 73.4 6.5 32 49-84 117-148 (669)
38 PF13912 zf-C2H2_6: C2H2-type 97.3 0.00015 3.3E-09 41.8 1.7 25 17-41 1-25 (27)
39 PF13912 zf-C2H2_6: C2H2-type 97.3 7.3E-05 1.6E-09 43.2 0.3 25 775-799 2-26 (27)
40 KOG2785|consensus 97.1 0.0012 2.6E-08 63.9 6.4 72 663-734 167-242 (390)
41 KOG2785|consensus 97.1 0.0014 3E-08 63.5 6.6 74 446-527 166-242 (390)
42 PF13909 zf-H2C2_5: C2H2-type 96.9 0.00037 8.1E-09 38.7 0.8 24 775-799 1-24 (24)
43 KOG2482|consensus 96.9 0.004 8.7E-08 58.9 7.8 77 447-527 280-356 (423)
44 PF13909 zf-H2C2_5: C2H2-type 96.8 0.00042 9E-09 38.5 0.4 24 713-737 1-24 (24)
45 COG5189 SFP1 Putative transcri 96.8 0.0015 3.3E-08 60.8 4.0 70 661-733 348-419 (423)
46 COG5236 Uncharacterized conser 96.6 0.0022 4.8E-08 60.5 4.3 140 47-236 151-305 (493)
47 PF09237 GAGA: GAGA factor; I 96.6 0.0011 2.5E-08 42.8 1.5 28 713-741 25-52 (54)
48 PF09237 GAGA: GAGA factor; I 96.5 0.00097 2.1E-08 43.1 0.9 27 775-801 25-51 (54)
49 KOG4173|consensus 96.5 0.0019 4.2E-08 55.9 2.9 93 661-802 78-174 (253)
50 smart00355 ZnF_C2H2 zinc finge 96.5 0.0021 4.6E-08 36.6 2.2 24 18-41 1-24 (26)
51 PF12874 zf-met: Zinc-finger o 96.4 0.0019 4.2E-08 36.3 1.4 22 18-39 1-22 (25)
52 KOG2482|consensus 96.3 0.0039 8.5E-08 58.9 4.0 194 506-734 145-356 (423)
53 smart00355 ZnF_C2H2 zinc finge 96.3 0.002 4.3E-08 36.7 1.3 22 775-796 1-22 (26)
54 COG5236 Uncharacterized conser 96.2 0.0047 1E-07 58.3 3.9 141 124-299 151-305 (493)
55 PF12874 zf-met: Zinc-finger o 95.8 0.0053 1.1E-07 34.5 1.5 20 156-175 2-21 (25)
56 PF12171 zf-C2H2_jaz: Zinc-fin 95.4 0.0049 1.1E-07 35.3 0.4 22 18-39 2-23 (27)
57 PF12171 zf-C2H2_jaz: Zinc-fin 95.3 0.01 2.2E-07 34.0 1.3 22 663-684 2-23 (27)
58 COG5048 FOG: Zn-finger [Genera 94.4 0.19 4.2E-06 54.8 9.8 57 274-330 32-90 (467)
59 PRK04860 hypothetical protein; 94.2 0.028 6.2E-07 49.1 2.0 38 275-316 119-156 (160)
60 KOG4173|consensus 94.0 0.035 7.7E-07 48.5 2.3 92 444-590 77-172 (253)
61 PF12013 DUF3505: Protein of u 93.9 0.051 1.1E-06 44.6 2.9 86 713-799 12-109 (109)
62 PRK04860 hypothetical protein; 93.7 0.036 7.7E-07 48.4 1.7 39 46-89 118-156 (160)
63 PF13913 zf-C2HC_2: zinc-finge 93.4 0.048 1E-06 30.4 1.3 21 663-684 3-23 (25)
64 COG4049 Uncharacterized protei 93.3 0.046 1E-06 36.0 1.3 32 775-806 18-49 (65)
65 PF12013 DUF3505: Protein of u 93.2 0.16 3.6E-06 41.6 4.8 84 505-589 11-109 (109)
66 PF13913 zf-C2HC_2: zinc-finge 92.6 0.11 2.4E-06 28.9 2.0 21 18-39 3-23 (25)
67 smart00451 ZnF_U1 U1-like zinc 92.1 0.068 1.5E-06 33.0 0.9 23 775-797 4-26 (35)
68 smart00451 ZnF_U1 U1-like zinc 92.0 0.12 2.7E-06 31.8 2.0 22 17-38 3-24 (35)
69 COG5048 FOG: Zn-finger [Genera 91.6 0.036 7.7E-07 60.6 -1.4 47 160-206 394-443 (467)
70 KOG2893|consensus 91.4 0.051 1.1E-06 48.6 -0.3 48 664-737 12-59 (341)
71 KOG2893|consensus 91.4 0.056 1.2E-06 48.4 -0.1 48 448-530 12-59 (341)
72 COG4049 Uncharacterized protei 88.5 0.2 4.3E-06 33.2 0.7 27 12-38 12-38 (65)
73 TIGR00622 ssl1 transcription f 86.8 1.1 2.3E-05 36.1 4.0 21 46-66 14-34 (112)
74 cd00350 rubredoxin_like Rubred 83.3 0.66 1.4E-05 28.1 1.1 24 276-311 2-25 (33)
75 PHA00626 hypothetical protein 83.2 0.38 8.2E-06 32.2 0.1 13 713-725 24-36 (59)
76 PF02892 zf-BED: BED zinc fing 82.6 0.58 1.3E-05 30.9 0.8 24 775-798 17-44 (45)
77 PF09986 DUF2225: Uncharacteri 79.5 0.7 1.5E-05 43.3 0.5 56 663-725 6-61 (214)
78 cd00729 rubredoxin_SM Rubredox 79.1 0.78 1.7E-05 27.9 0.4 12 17-28 2-13 (34)
79 PF09538 FYDLN_acid: Protein o 78.7 0.76 1.6E-05 37.1 0.4 12 181-192 9-20 (108)
80 KOG0717|consensus 78.5 3.5 7.6E-05 42.1 4.9 24 446-469 460-483 (508)
81 PF06524 NOA36: NOA36 protein; 77.7 0.69 1.5E-05 42.6 -0.1 28 300-327 206-233 (314)
82 PF10571 UPF0547: Uncharacteri 76.5 1.5 3.3E-05 24.7 1.1 9 127-135 17-25 (26)
83 PF09986 DUF2225: Uncharacteri 75.4 0.68 1.5E-05 43.4 -0.8 44 46-89 4-61 (214)
84 PF02892 zf-BED: BED zinc fing 74.5 2.4 5.1E-05 27.9 1.8 25 505-529 16-44 (45)
85 KOG2186|consensus 72.7 1.7 3.7E-05 40.1 1.0 12 455-466 210-221 (276)
86 smart00614 ZnF_BED BED zinc fi 72.6 1.7 3.6E-05 29.5 0.7 25 775-799 19-48 (50)
87 TIGR02098 MJ0042_CXXC MJ0042 f 71.8 2.6 5.6E-05 26.5 1.4 11 76-86 25-35 (38)
88 PF13719 zinc_ribbon_5: zinc-r 71.5 3 6.5E-05 26.0 1.6 12 75-86 24-35 (37)
89 PF05443 ROS_MUCR: ROS/MUCR tr 71.0 1.1 2.3E-05 37.6 -0.5 27 775-804 73-99 (132)
90 PRK00464 nrdR transcriptional 70.7 1.5 3.2E-05 38.2 0.1 18 713-730 29-46 (154)
91 KOG2186|consensus 70.2 2.3 4.9E-05 39.3 1.2 46 17-67 3-48 (276)
92 TIGR00622 ssl1 transcription f 69.0 8 0.00017 31.3 3.9 21 211-231 14-34 (112)
93 smart00531 TFIIE Transcription 68.9 3.2 7E-05 36.2 1.9 37 46-87 98-134 (147)
94 PRK00398 rpoP DNA-directed RNA 68.7 3.2 6.9E-05 27.5 1.4 12 76-87 3-14 (46)
95 PF13717 zinc_ribbon_4: zinc-r 67.6 4.8 0.00011 24.9 1.9 33 77-134 3-35 (36)
96 smart00531 TFIIE Transcription 66.7 6.8 0.00015 34.2 3.5 39 271-313 95-133 (147)
97 PF09538 FYDLN_acid: Protein o 65.9 2.4 5.3E-05 34.2 0.5 30 48-89 10-39 (108)
98 smart00734 ZnF_Rad18 Rad18-lik 65.7 5 0.00011 22.7 1.6 19 19-38 3-21 (26)
99 TIGR02300 FYDLN_acid conserved 65.0 2.4 5.1E-05 34.7 0.3 11 213-223 10-20 (129)
100 smart00659 RPOLCX RNA polymera 63.8 5 0.00011 26.2 1.6 27 275-312 2-28 (44)
101 COG2888 Predicted Zn-ribbon RN 62.2 5.4 0.00012 27.5 1.5 51 17-85 9-59 (61)
102 TIGR00373 conserved hypothetic 61.6 5.9 0.00013 35.0 2.2 31 46-86 108-138 (158)
103 COG1592 Rubrerythrin [Energy p 61.5 3.8 8.3E-05 36.0 1.0 9 663-671 135-143 (166)
104 KOG2071|consensus 60.7 16 0.00035 39.0 5.4 15 660-674 511-525 (579)
105 COG1198 PriA Primosomal protei 60.4 5.6 0.00012 44.7 2.2 13 119-131 457-469 (730)
106 PF12907 zf-met2: Zinc-binding 59.8 5.5 0.00012 25.2 1.2 26 775-800 2-30 (40)
107 PF15269 zf-C2H2_7: Zinc-finge 59.7 9.1 0.0002 24.3 2.0 24 504-527 19-42 (54)
108 COG1996 RPC10 DNA-directed RNA 59.4 5.2 0.00011 26.6 1.0 12 75-86 5-16 (49)
109 TIGR00373 conserved hypothetic 58.2 9.8 0.00021 33.7 2.9 33 272-313 106-138 (158)
110 PRK14890 putative Zn-ribbon RN 57.7 5.7 0.00012 27.5 1.1 10 662-671 25-34 (59)
111 PRK06266 transcription initiat 57.6 7.1 0.00015 35.3 2.0 33 46-88 116-148 (178)
112 PF15269 zf-C2H2_7: Zinc-finge 57.0 7.8 0.00017 24.6 1.5 23 662-684 20-42 (54)
113 COG1592 Rubrerythrin [Energy p 56.9 6.5 0.00014 34.6 1.6 24 275-311 134-157 (166)
114 PF09723 Zn-ribbon_8: Zinc rib 56.9 3.1 6.8E-05 26.8 -0.2 18 663-680 6-23 (42)
115 PRK06266 transcription initiat 56.7 10 0.00023 34.2 2.9 32 273-313 115-146 (178)
116 PF04959 ARS2: Arsenite-resist 56.2 6.3 0.00014 36.5 1.4 29 502-530 74-102 (214)
117 PF12907 zf-met2: Zinc-binding 55.8 4.3 9.2E-05 25.7 0.2 30 663-692 2-34 (40)
118 PF06524 NOA36: NOA36 protein; 54.9 5.7 0.00012 36.9 0.9 19 211-229 208-226 (314)
119 COG5188 PRP9 Splicing factor 3 53.7 20 0.00044 35.1 4.3 22 506-527 239-260 (470)
120 smart00834 CxxC_CXXC_SSSS Puta 53.3 4.4 9.5E-05 25.9 -0.0 16 663-678 6-21 (41)
121 PF04959 ARS2: Arsenite-resist 52.8 7 0.00015 36.2 1.2 26 775-800 78-103 (214)
122 KOG0717|consensus 49.4 22 0.00047 36.7 4.0 23 505-527 460-482 (508)
123 TIGR02605 CxxC_CxxC_SSSS putat 46.8 6.3 0.00014 26.9 -0.0 13 663-675 6-18 (52)
124 COG4957 Predicted transcriptio 46.7 6.2 0.00013 32.5 -0.1 28 775-805 77-104 (148)
125 PF03604 DNA_RNApol_7kD: DNA d 45.3 10 0.00022 22.7 0.7 6 214-219 19-24 (32)
126 COG5151 SSL1 RNA polymerase II 45.2 21 0.00046 34.2 3.0 22 124-145 388-409 (421)
127 COG1997 RPL43A Ribosomal prote 44.6 12 0.00025 28.4 1.0 31 123-165 34-64 (89)
128 PF14353 CpXC: CpXC protein 44.2 3.6 7.9E-05 35.0 -1.9 22 506-527 39-60 (128)
129 KOG2593|consensus 43.0 16 0.00034 37.4 2.0 36 46-85 127-162 (436)
130 COG2331 Uncharacterized protei 42.6 18 0.0004 26.4 1.7 20 710-733 10-29 (82)
131 COG0068 HypF Hydrogenase matur 41.9 2.7 5.9E-05 45.7 -3.6 63 19-92 103-167 (750)
132 PRK14873 primosome assembly pr 41.8 17 0.00037 40.9 2.3 14 71-84 405-418 (665)
133 KOG4377|consensus 41.6 12 0.00025 37.6 0.9 26 304-329 402-429 (480)
134 KOG4167|consensus 40.0 11 0.00025 40.9 0.5 26 182-207 793-818 (907)
135 KOG4377|consensus 40.0 29 0.00062 35.0 3.2 36 773-808 400-437 (480)
136 KOG1280|consensus 39.6 22 0.00048 34.9 2.3 40 123-162 78-117 (381)
137 KOG2807|consensus 38.8 32 0.00069 33.6 3.2 35 46-95 275-309 (378)
138 KOG2593|consensus 37.7 21 0.00045 36.6 1.9 22 502-523 125-146 (436)
139 KOG4124|consensus 37.1 8.2 0.00018 37.6 -0.9 71 74-145 347-419 (442)
140 KOG1842|consensus 37.0 19 0.00042 36.7 1.6 36 773-808 14-49 (505)
141 KOG1280|consensus 35.8 34 0.00074 33.7 2.9 30 445-474 78-107 (381)
142 TIGR00595 priA primosomal prot 35.2 24 0.00052 38.5 2.1 17 69-85 233-249 (505)
143 PF05443 ROS_MUCR: ROS/MUCR tr 35.0 21 0.00046 30.1 1.3 25 15-42 70-94 (132)
144 PRK09678 DNA-binding transcrip 34.8 8.5 0.00018 28.3 -0.9 41 276-318 2-44 (72)
145 PF13451 zf-trcl: Probable zin 34.5 22 0.00048 23.8 1.0 18 16-33 3-20 (49)
146 TIGR01206 lysW lysine biosynth 33.9 15 0.00032 25.3 0.2 12 663-674 3-14 (54)
147 KOG3940|consensus 32.8 51 0.0011 31.9 3.4 25 659-684 127-151 (351)
148 KOG2071|consensus 32.3 32 0.00069 37.0 2.3 27 301-327 416-442 (579)
149 KOG4167|consensus 31.8 32 0.00069 37.7 2.2 26 775-800 793-818 (907)
150 KOG2807|consensus 31.6 53 0.0012 32.1 3.4 21 211-231 289-309 (378)
151 COG0068 HypF Hydrogenase matur 31.6 8 0.00017 42.3 -2.1 28 126-161 153-180 (750)
152 PF07754 DUF1610: Domain of un 31.2 19 0.00041 19.9 0.3 11 772-782 14-24 (24)
153 KOG4118|consensus 31.0 36 0.00079 23.9 1.6 31 775-805 39-69 (74)
154 KOG3408|consensus 30.8 33 0.00071 27.9 1.6 25 14-38 54-78 (129)
155 COG3357 Predicted transcriptio 30.6 19 0.00041 27.4 0.3 28 46-84 57-84 (97)
156 smart00440 ZnF_C2C2 C2C2 Zinc 30.1 12 0.00027 23.8 -0.6 11 713-723 29-39 (40)
157 PRK04023 DNA polymerase II lar 29.9 42 0.00092 38.7 2.9 36 15-84 624-659 (1121)
158 KOG3408|consensus 29.3 35 0.00077 27.7 1.6 26 151-176 54-79 (129)
159 PRK04023 DNA polymerase II lar 28.4 43 0.00094 38.6 2.6 10 663-672 1038-1047(1121)
160 PF01780 Ribosomal_L37ae: Ribo 28.1 19 0.0004 27.8 -0.1 12 124-135 53-64 (90)
161 PF13240 zinc_ribbon_2: zinc-r 28.1 29 0.00062 19.0 0.6 6 127-132 16-21 (23)
162 PF08274 PhnA_Zn_Ribbon: PhnA 27.9 26 0.00056 20.7 0.5 12 300-311 16-27 (30)
163 PF05290 Baculo_IE-1: Baculovi 27.5 50 0.0011 27.6 2.1 55 15-90 78-135 (140)
164 PF02176 zf-TRAF: TRAF-type zi 27.2 28 0.00061 24.5 0.7 40 275-315 9-54 (60)
165 PF13878 zf-C2H2_3: zinc-finge 26.6 40 0.00087 21.7 1.2 22 183-204 15-38 (41)
166 PF12760 Zn_Tnp_IS1595: Transp 25.4 32 0.00068 22.8 0.6 9 663-671 19-27 (46)
167 COG1594 RPB9 DNA-directed RNA 25.2 12 0.00026 30.7 -1.7 14 663-676 23-36 (113)
168 PF09416 UPF1_Zn_bind: RNA hel 24.9 42 0.00092 29.0 1.4 23 152-174 12-40 (152)
169 COG4957 Predicted transcriptio 24.7 43 0.00093 27.8 1.3 23 17-42 76-98 (148)
170 PF04780 DUF629: Protein of un 24.6 63 0.0014 34.2 2.9 30 506-535 58-87 (466)
171 KOG2636|consensus 24.6 47 0.001 34.1 1.9 23 15-37 399-422 (497)
172 PF08790 zf-LYAR: LYAR-type C2 24.2 28 0.00062 20.1 0.2 20 663-683 1-20 (28)
173 KOG2272|consensus 23.8 52 0.0011 30.6 1.8 15 212-226 163-177 (332)
174 COG5151 SSL1 RNA polymerase II 23.7 74 0.0016 30.8 2.9 70 663-734 323-410 (421)
175 KOG1842|consensus 23.5 51 0.0011 33.9 1.9 31 711-741 14-44 (505)
176 KOG4124|consensus 23.4 42 0.00091 33.0 1.2 70 662-734 349-420 (442)
177 COG1655 Uncharacterized protei 23.3 21 0.00045 32.8 -0.7 13 155-167 20-32 (267)
178 PF14446 Prok-RING_1: Prokaryo 23.2 33 0.00071 23.6 0.4 14 77-90 6-19 (54)
179 PTZ00255 60S ribosomal protein 23.1 31 0.00068 26.7 0.3 14 123-136 53-66 (90)
180 PRK14714 DNA polymerase II lar 23.0 63 0.0014 38.6 2.7 11 76-86 692-702 (1337)
181 TIGR00280 L37a ribosomal prote 22.8 29 0.00063 26.9 0.1 14 123-136 52-65 (91)
182 PRK00432 30S ribosomal protein 22.3 30 0.00065 23.4 0.0 11 713-723 38-48 (50)
183 KOG4727|consensus 21.9 50 0.0011 28.8 1.2 28 656-683 69-96 (193)
184 COG1198 PriA Primosomal protei 21.7 56 0.0012 37.1 2.0 40 125-190 445-484 (730)
185 PF13821 DUF4187: Domain of un 21.5 99 0.0022 21.5 2.4 19 506-524 28-46 (55)
186 PF07503 zf-HYPF: HypF finger; 21.3 20 0.00044 22.0 -0.8 19 665-683 2-20 (35)
187 PF04780 DUF629: Protein of un 21.0 64 0.0014 34.1 2.1 28 446-473 57-84 (466)
188 COG1998 RPS31 Ribosomal protei 20.9 40 0.00086 22.4 0.4 9 713-721 38-46 (51)
189 PRK05580 primosome assembly pr 20.8 61 0.0013 37.1 2.1 15 71-85 403-417 (679)
190 PF08271 TF_Zn_Ribbon: TFIIB z 20.3 54 0.0012 21.2 0.9 12 123-134 18-29 (43)
191 PF01363 FYVE: FYVE zinc finge 20.1 38 0.00082 24.8 0.2 10 49-58 11-20 (69)
192 PF06220 zf-U1: U1 zinc finger 20.1 61 0.0013 20.4 1.1 22 712-733 3-26 (38)
No 1
>KOG1074|consensus
Probab=99.96 E-value=8.2e-31 Score=266.54 Aligned_cols=294 Identities=22% Similarity=0.356 Sum_probs=176.6
Q ss_pred eeecCcChhccCChHHHHHHHHHhcCCCceeccccchhcCChhhHHHHHHHccCCCCCCcccCCCCccccCCCCCCCCCC
Q psy8169 275 YLTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCTKNVSNGILNCDDNEGEYNGHGSHEENE 354 (843)
Q Consensus 275 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~c~~~~~~~~~~~~~~~~~ 354 (843)
+-.|.+|.+.......|+.|+++|+|++||+|.+|++.|.++.+|+.|+.+|....+
T Consensus 605 PNqCiiC~rVlSC~saLqmHyrtHtGERPFkCKiCgRAFtTkGNLkaH~~vHka~p~----------------------- 661 (958)
T KOG1074|consen 605 PNQCIICLRVLSCPSALQMHYRTHTGERPFKCKICGRAFTTKGNLKAHMSVHKAKPP----------------------- 661 (958)
T ss_pred ccceeeeeecccchhhhhhhhhcccCcCccccccccchhccccchhhcccccccCcc-----------------------
Confidence 457999999999999999999999999999999999999999999999998864332
Q ss_pred CCCCcchhchhhhhhHHHhhhhhhhhhhhhhhhcccccccCCCCcccccccCCCcchhhhccCCcccccCCCCCCCCCCC
Q psy8169 355 DDEDYDDMNEMMLVPVIKMELKEENEENEDRENQSEEENYTPVPEVSIKRETDPLSVEDIISAGEVSITPIPQSNTNNHG 434 (843)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (843)
T Consensus 662 -------------------------------------------------------------------------------- 661 (958)
T KOG1074|consen 662 -------------------------------------------------------------------------------- 661 (958)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCCCCceecc---cccccccChHHHHHHHHhhccC-CCCcccccccCCCCcchhhhHhhhccCCCCCCcccccc
Q psy8169 435 SGSTNNTQANKIIQCH---ICLKTFAKKDSLKKHMKVFHTY-ISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQCRI 510 (843)
Q Consensus 435 ~~~~~~~~~~~~~~C~---~C~~~f~~~~~L~~H~~~~H~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~ 510 (843)
..-.|.|+ +|.+.|.+.-.|.+|+++ |.+ ..+... .+ .+.+. ..-+|..
T Consensus 662 --------~R~q~ScP~~~ic~~kftn~V~lpQhIri-H~~~~~s~g~-------~a--~e~~~---------~adq~~~ 714 (958)
T KOG1074|consen 662 --------ARVQFSCPSTFICQKKFTNAVTLPQHIRI-HLGGQISNGG-------TA--AEGIL---------AADQCSS 714 (958)
T ss_pred --------ccccccCCchhhhcccccccccccceEEe-ecCCCCCCCc-------cc--ccccc---------hhcccch
Confidence 11347899 999999999999999999 653 222110 00 01110 1147999
Q ss_pred cccccCChHHHHHHHhhhccccCcchhhhhhhhhhhhhhhHHHHhhcccCCCC----CcccccccccccchHHHHHHHHH
Q psy8169 511 CSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKS----RIPCELCYKTFTRKDSLRKHMKI 586 (843)
Q Consensus 511 C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~C~~C~~~f~~~~~L~~H~~~ 586 (843)
|.+.|.....+..++.. |....... +..+....++.+. ++.+..|+..+.....+..+-..
T Consensus 715 ~qk~~~~a~~f~~~~se-~~~~~s~~--------------~~~~~~~t~t~~~~~tp~~~e~~~~~~~~~e~~i~~~g~t 779 (958)
T KOG1074|consen 715 CQKTFSDARSFSQQISE-QPSPESEP--------------DEQMDERTETEELDVTPPPPENSCGRELEGEMAISVRGST 779 (958)
T ss_pred hhhcccccccchhhhhc-cCCcccCC--------------cccccccccccccccCCCccccccccccCcccccccccch
Confidence 99999999999999887 42211100 0001111122222 67789999999888877766544
Q ss_pred hhccCCCCCCCCCCCCCCCcchhhhccCCcccc-----------cCc----cccCccc-ccCCC-ccc-ccCC-cC--CC
Q psy8169 587 FHTRRNPSANSGNSGTSAPPAVKLEQNGGEKVE-----------NST----SVENSTS-VENST-SVE-NSAN-VE--NT 645 (843)
Q Consensus 587 ~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~----~~~~~~~-~~~~~-~~~-~~~~-~~--~~ 645 (843)
. ........ ............+..+.++.. ... ...+... ..+.. ..+ +... .. +.
T Consensus 780 e-~asa~~~~--vg~~s~~~~~~~~~~T~~k~~~~~~~~~~~~~~~v~~~pvl~~~~~~~l~eg~~t~~n~~t~~~~~~s 856 (958)
T KOG1074|consen 780 E-EASANLDE--VGTVSAAGEAGEEDDTSEKPTQASSFPGEILAPSVNMDPVLWNQETSMLNEGLATKTNEITPEGPADS 856 (958)
T ss_pred h-hhhcChhh--hcCccccchhhhhcccCCCCcccccCCCcCCccccccCchhhcccccccccccccccccccCCCcchh
Confidence 2 10000000 000000000000000000000 000 0000000 00000 000 0000 00 00
Q ss_pred ccccCCCCCCCC------CCCCCCCCccccccccchhhhhhhhhccccCCCCCCccchhhcccccccccccccccccchh
Q psy8169 646 SSVDNRTSVGPV------APIDRIPCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCD 719 (843)
Q Consensus 646 ~~~~~~~~~~p~------~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~p~~~~~~~~~~~~~~~~~~~~~~~C~~C~ 719 (843)
.......+..++ +-.....|.+||+.|.+.++|..|+++ |++++| |.|.+|+
T Consensus 857 v~qs~~~p~l~p~l~~~~pvnn~h~C~vCgk~FsSSsALqiH~rT-Htg~KP---------------------F~C~fC~ 914 (958)
T KOG1074|consen 857 VIQSGGVPTLEPSLGRPGPVNNAHVCNVCGKQFSSSAALEIHMRT-HTGPKP---------------------FFCHFCE 914 (958)
T ss_pred hhhhccccccCCCCCCCCcccchhhhccchhcccchHHHHHhhhc-CCCCCC---------------------ccchhhh
Confidence 000000000010 111236799999999999999999999 999999 9999999
Q ss_pred hhhhhHHHHhhhhhhhcCC
Q psy8169 720 KSFTRKDSLKKHNRIFHGG 738 (843)
Q Consensus 720 ~~f~~~~~L~~H~~~~H~~ 738 (843)
+.|+++.+|+.||..|++.
T Consensus 915 ~aFttrgnLKvHMgtH~w~ 933 (958)
T KOG1074|consen 915 EAFTTRGNLKVHMGTHMWV 933 (958)
T ss_pred hhhhhhhhhhhhhcccccc
Confidence 9999999999999998883
No 2
>KOG1074|consensus
Probab=99.96 E-value=1.9e-29 Score=256.68 Aligned_cols=115 Identities=32% Similarity=0.632 Sum_probs=96.6
Q ss_pred cccccchhHhhcCHHHHHHHHhhccCccccCccccCcccccccchhhHHHhhhhcCCCccCCccccCCcccccCCHHHHH
Q psy8169 181 KYTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHIENNHLDYSCLECKAVGEEISFDTKKNLL 260 (843)
Q Consensus 181 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~~C~~C~~~~~~~~~~~~~~l~ 260 (843)
+-+|-+|.++..-...|+.|.++|+++ ++|+|.+|++.|.++.+|+.|| .+|+.
T Consensus 605 PNqCiiC~rVlSC~saLqmHyrtHtGE---RPFkCKiCgRAFtTkGNLkaH~-~vHka---------------------- 658 (958)
T KOG1074|consen 605 PNQCIICLRVLSCPSALQMHYRTHTGE---RPFKCKICGRAFTTKGNLKAHM-SVHKA---------------------- 658 (958)
T ss_pred ccceeeeeecccchhhhhhhhhcccCc---Cccccccccchhccccchhhcc-ccccc----------------------
Confidence 378999999999999999999999999 9999999999999999999998 66631
Q ss_pred HHHhhhcCCCCCcceeecC---cChhccCChHHHHHHHHHhcCCC-------------ceeccccchhcCChhhHHHHHH
Q psy8169 261 LHLKTKHKNVISNVYLTCL---ICFKTFLTEVDLGKHMKMHMDDN-------------QIQCRFCNKYFSRNYNLKQHMK 324 (843)
Q Consensus 261 ~H~~~~~~~~~~~~~~~C~---~C~~~f~~~~~L~~H~~~H~~~~-------------~~~C~~C~~~f~~~~~L~~H~~ 324 (843)
.++. +..+.|+ +|.+.|.+...|..|+++|.+.. .-+|..|.+.|.....+..++.
T Consensus 659 -----~p~~---R~q~ScP~~~ic~~kftn~V~lpQhIriH~~~~~s~g~~a~e~~~~adq~~~~qk~~~~a~~f~~~~s 730 (958)
T KOG1074|consen 659 -----KPPA---RVQFSCPSTFICQKKFTNAVTLPQHIRIHLGGQISNGGTAAEGILAADQCSSCQKTFSDARSFSQQIS 730 (958)
T ss_pred -----Cccc---cccccCCchhhhcccccccccccceEEeecCCCCCCCcccccccchhcccchhhhcccccccchhhhh
Confidence 1111 1258899 99999999999999999998431 1479999999999999999988
Q ss_pred HccCC
Q psy8169 325 TCTKN 329 (843)
Q Consensus 325 ~h~~~ 329 (843)
.+...
T Consensus 731 e~~~~ 735 (958)
T KOG1074|consen 731 EQPSP 735 (958)
T ss_pred ccCCc
Confidence 87443
No 3
>KOG3608|consensus
Probab=99.95 E-value=1.8e-27 Score=216.86 Aligned_cols=315 Identities=22% Similarity=0.422 Sum_probs=225.6
Q ss_pred chhhcCCHHHHHHHHhhc----cC---------CCCCccccc--ccccccCC-HHHHHHhHHhhccCCCceeCCCCCCcc
Q psy8169 23 CYKVFESRENLMRHLKIH----DD---------KESKRFKCE--QCDKRFSS-NAELNKHSSAIHQRLKLHECDLCGKNF 86 (843)
Q Consensus 23 C~~~f~~~~~l~~H~~~h----~~---------~~~~~~~C~--~C~~~f~~-~~~l~~H~~~~h~~~~~~~C~~C~~~f 86 (843)
|.+...+..+|..|+..| .. +....+.|. .|++..-+ ...|.+|+ ..|.-.. +|..
T Consensus 32 C~~~C~~~~s~~~h~~dHL~~h~~~~~e~~~~~eh~de~qC~w~~C~f~~~~~s~~l~RHv-y~H~y~~--~l~q----- 103 (467)
T KOG3608|consen 32 CQEICTGEWSLNGHIGDHLEHHAKAQDERGAHAEHTDEHQCTWNSCDFRTENSSADLIRHV-YFHCYHT--KLKQ----- 103 (467)
T ss_pred hhhhhcchhhhhhHHHHHHHhhhccccccccccccccceeEEeccCCccccchHHHHHhhh-hhhhhHH--HHHH-----
Confidence 556666666666555443 21 111257785 58887766 58899997 5552110 0000
Q ss_pred cchhhHHhhhcCCCCCCCCCChHHHhhhhhhhhcCCCcccCCc--chhccCChhHHHHhHhhhcCC-----------CC-
Q psy8169 87 SQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRLKLHECDL--CGKNFSQRNNLKRHLEEVHRT-----------DG- 152 (843)
Q Consensus 87 ~~~~~l~~H~~~~~~~~~~~~~~~l~~h~~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~h~~-----------~~- 152 (843)
.-+..|..|.-...|.-.|.... .+......|.|.+ |+..|.+...|..|+. .|.. ++
T Consensus 104 ~G~~al~~~~dig~c~~~f~~~~-------~ip~~g~~f~C~WedCe~~F~s~~ef~dHV~-~H~l~ceyd~~~~~~D~~ 175 (467)
T KOG3608|consen 104 QGKLALDLHPDIGACTAPFRLME-------KIPALGQNFRCGWEDCEREFVSIVEFQDHVV-KHALFCEYDIQKTPEDER 175 (467)
T ss_pred HHHHHHhcCCCcCcccCCcchhh-------ccccchhhhccChhhcCCcccCHHHHHHHHH-HhhhhhhhhhhhCCCCCC
Confidence 00111111211111111111111 1112223477875 9999999999999987 3411 12
Q ss_pred cccccc--cccccccCHHHHHHHHhhcCCCc-ccccchhHhhcCHHHHHHHHhhccCccccCccccCcccccccchhhHH
Q psy8169 153 MKFECY--VCSKVLATSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLK 229 (843)
Q Consensus 153 ~~~~C~--~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~~~f~~~~~l~ 229 (843)
..+.|. .|-+.|.++..|++|++.|.+++ ..|+.|+.-|.++..|..|++..+.... ++|+|..|.+.|.+...|.
T Consensus 176 pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~-n~fqC~~C~KrFaTeklL~ 254 (467)
T KOG3608|consen 176 PVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCGELFRTKTKLFDHLRRQTELNT-NSFQCAQCFKRFATEKLLK 254 (467)
T ss_pred ceeeccchhhhhhhccHHHHHHHHHhcCCCeEEecchHHHHhccccHHHHHHHhhhhhcC-CchHHHHHHHHHhHHHHHH
Confidence 235564 49999999999999999999988 8999999999999999999987765432 6899999999999999999
Q ss_pred HhhhhcCCCccCCccccCCcccccCCHHHHHHHHhhhcCCCCCcceeecCcChhccCChHHHHHHHHH-hcCCCceeccc
Q psy8169 230 AHIENNHLDYSCLECKAVGEEISFDTKKNLLLHLKTKHKNVISNVYLTCLICFKTFLTEVDLGKHMKM-HMDDNQIQCRF 308 (843)
Q Consensus 230 ~H~~~~H~~~~C~~C~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~-H~~~~~~~C~~ 308 (843)
.|+. .| +. .|+|+.|+.+....++|..|++. |..++||+|+.
T Consensus 255 ~Hv~-rH--------------------------vn----------~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~ 297 (467)
T KOG3608|consen 255 SHVV-RH--------------------------VN----------CYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDE 297 (467)
T ss_pred HHHH-Hh--------------------------hh----------cccccccccCCCChHHHHHHHHhhhccCCCccccc
Confidence 9983 22 11 38899999999999999999985 88899999999
Q ss_pred cchhcCChhhHHHHHHHccCCCCCCcccCCCCccccCCCCCCCCCCCCCCcchhchhhhhhHHHhhhhhhhhhhhhhhhc
Q psy8169 309 CNKYFSRNYNLKQHMKTCTKNVSNGILNCDDNEGEYNGHGSHEENEDDEDYDDMNEMMLVPVIKMELKEENEENEDRENQ 388 (843)
Q Consensus 309 C~~~f~~~~~L~~H~~~h~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (843)
|++.|.+...|.+|+..|.
T Consensus 298 Cd~~c~~esdL~kH~~~HS------------------------------------------------------------- 316 (467)
T KOG3608|consen 298 CDTRCVRESDLAKHVQVHS------------------------------------------------------------- 316 (467)
T ss_pred hhhhhccHHHHHHHHHhcc-------------------------------------------------------------
Confidence 9999999999999998764
Q ss_pred ccccccCCCCcccccccCCCcchhhhccCCcccccCCCCCCCCCCCCCCCCCCCCCCceeccc--ccccccChHHHHHHH
Q psy8169 389 SEEENYTPVPEVSIKRETDPLSVEDIISAGEVSITPIPQSNTNNHGSGSTNNTQANKIIQCHI--CLKTFAKKDSLKKHM 466 (843)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~--C~~~f~~~~~L~~H~ 466 (843)
+..|.|.. |.++|.+...|++|+
T Consensus 317 -------------------------------------------------------~~~y~C~h~~C~~s~r~~~q~~~H~ 341 (467)
T KOG3608|consen 317 -------------------------------------------------------KTVYQCEHPDCHYSVRTYTQMRRHF 341 (467)
T ss_pred -------------------------------------------------------ccceecCCCCCcHHHHHHHHHHHHH
Confidence 12488988 999999999999999
Q ss_pred HhhccCCCCcccccccCCCCcchhhhHhhhccCCCCCCcccccccccccCChHHHHHHHhhhccccCcc
Q psy8169 467 KVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQCRICSKTFTRKDSLRKHMRRFHIINDTN 535 (843)
Q Consensus 467 ~~~H~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~ 535 (843)
+.+|.+..| .+|.|..|++.|++-.+|.+|+++.|...-+.
T Consensus 342 ~evhEg~np----------------------------~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f~~Ps 382 (467)
T KOG3608|consen 342 LEVHEGNNP----------------------------ILYACHCCDRFFTSGKSLSAHLMKKHGFRLPS 382 (467)
T ss_pred HHhccCCCC----------------------------CceeeecchhhhccchhHHHHHHHhhcccCCC
Confidence 998866322 23999999999999999999999988754433
No 4
>KOG3608|consensus
Probab=99.95 E-value=4.8e-27 Score=214.13 Aligned_cols=232 Identities=25% Similarity=0.454 Sum_probs=191.5
Q ss_pred cccCCcccccCCHHHHHHHHhhhcC---------CCCCcceeecCc--ChhccCChHHHHHHHHHhcCCCceeccccchh
Q psy8169 244 CKAVGEEISFDTKKNLLLHLKTKHK---------NVISNVYLTCLI--CFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKY 312 (843)
Q Consensus 244 C~~~~~~~~~~~~~~l~~H~~~~~~---------~~~~~~~~~C~~--C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~ 312 (843)
|++.+|+..|.+...+..|+..|.- .......+-|.. |.+.|.++..|+.|++.|++++...|+.|+..
T Consensus 137 C~WedCe~~F~s~~ef~dHV~~H~l~ceyd~~~~~~D~~pv~~C~W~~Ct~~~~~k~~LreH~r~Hs~eKvvACp~Cg~~ 216 (467)
T KOG3608|consen 137 CGWEDCEREFVSIVEFQDHVVKHALFCEYDIQKTPEDERPVTMCNWAMCTKHMGNKYRLREHIRTHSNEKVVACPHCGEL 216 (467)
T ss_pred cChhhcCCcccCHHHHHHHHHHhhhhhhhhhhhCCCCCCceeeccchhhhhhhccHHHHHHHHHhcCCCeEEecchHHHH
Confidence 4444445556666665555544321 122234567764 99999999999999999999999999999999
Q ss_pred cCChhhHHHHHHHccCCCCCCcccCCCCccccCCCCCCCCCCCCCCcchhchhhhhhHHHhhhhhhhhhhhhhhhccccc
Q psy8169 313 FSRNYNLKQHMKTCTKNVSNGILNCDDNEGEYNGHGSHEENEDDEDYDDMNEMMLVPVIKMELKEENEENEDRENQSEEE 392 (843)
Q Consensus 313 f~~~~~L~~H~~~h~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (843)
|.++..|..|++.-+.
T Consensus 217 F~~~tkl~DH~rRqt~---------------------------------------------------------------- 232 (467)
T KOG3608|consen 217 FRTKTKLFDHLRRQTE---------------------------------------------------------------- 232 (467)
T ss_pred hccccHHHHHHHhhhh----------------------------------------------------------------
Confidence 9999999999986431
Q ss_pred ccCCCCcccccccCCCcchhhhccCCcccccCCCCCCCCCCCCCCCCCCCCCCceecccccccccChHHHHHHHHhhccC
Q psy8169 393 NYTPVPEVSIKRETDPLSVEDIISAGEVSITPIPQSNTNNHGSGSTNNTQANKIIQCHICLKTFAKKDSLKKHMKVFHTY 472 (843)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~ 472 (843)
....+|+|..|.+.|.+...|..|+.. |..
T Consensus 233 -------------------------------------------------l~~n~fqC~~C~KrFaTeklL~~Hv~r-Hvn 262 (467)
T KOG3608|consen 233 -------------------------------------------------LNTNSFQCAQCFKRFATEKLLKSHVVR-HVN 262 (467)
T ss_pred -------------------------------------------------hcCCchHHHHHHHHHhHHHHHHHHHHH-hhh
Confidence 112369999999999999999999998 643
Q ss_pred CCCcccccccCCCCcchhhhHhhhccCCCCCCcccccccccccCChHHHHHHHhhhccccCcchhhhhhhhhhhhhhhHH
Q psy8169 473 ISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQCRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDV 552 (843)
Q Consensus 473 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~~~~~~~~~ 552 (843)
. |+|+.|+-+....+.|.+||+..|.
T Consensus 263 -----------~---------------------ykCplCdmtc~~~ssL~~H~r~rHs---------------------- 288 (467)
T KOG3608|consen 263 -----------C---------------------YKCPLCDMTCSSASSLTTHIRYRHS---------------------- 288 (467)
T ss_pred -----------c---------------------ccccccccCCCChHHHHHHHHhhhc----------------------
Confidence 1 9999999999999999999998664
Q ss_pred HHhhcccCCCCCcccccccccccchHHHHHHHHHhhccCCCCCCCCCCCCCCCcchhhhccCCcccccCccccCcccccC
Q psy8169 553 ILKESGHEIKSRIPCELCYKTFTRKDSLRKHMKIFHTRRNPSANSGNSGTSAPPAVKLEQNGGEKVENSTSVENSTSVEN 632 (843)
Q Consensus 553 ~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (843)
..+||+|..|++.|.+.+.|.+|..+ |. .
T Consensus 289 --------~dkpfKCd~Cd~~c~~esdL~kH~~~-HS-------------------------~----------------- 317 (467)
T KOG3608|consen 289 --------KDKPFKCDECDTRCVRESDLAKHVQV-HS-------------------------K----------------- 317 (467)
T ss_pred --------cCCCccccchhhhhccHHHHHHHHHh-cc-------------------------c-----------------
Confidence 38999999999999999999999997 55 1
Q ss_pred CCcccccCCcCCCccccCCCCCCCCCCCCCCCCcc--ccccccchhhhhhhhhccccCCCCCCccchhhccccccccccc
Q psy8169 633 STSVENSANVENTSSVDNRTSVGPVAPIDRIPCTL--CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFI 710 (843)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~C~~--C~~~f~~~~~L~~H~~~~H~~~~p~~~~~~~~~~~~~~~~~~~ 710 (843)
++ |+|++ |.++|.+...|++|++.+|.|..|
T Consensus 318 -----------------------~~-----y~C~h~~C~~s~r~~~q~~~H~~evhEg~np------------------- 350 (467)
T KOG3608|consen 318 -----------------------TV-----YQCEHPDCHYSVRTYTQMRRHFLEVHEGNNP------------------- 350 (467)
T ss_pred -----------------------cc-----eecCCCCCcHHHHHHHHHHHHHHHhccCCCC-------------------
Confidence 11 99999 999999999999999999988877
Q ss_pred ccccccchhhhhhhHHHHhhhhhhhcCCCCC
Q psy8169 711 DRIRCELCDKSFTRKDSLKKHNRIFHGGADP 741 (843)
Q Consensus 711 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~ 741 (843)
.+|.|..|++.|++-.+|.+|++..|+-.-|
T Consensus 351 ~~Y~CH~Cdr~ft~G~~L~~HL~kkH~f~~P 381 (467)
T KOG3608|consen 351 ILYACHCCDRFFTSGKSLSAHLMKKHGFRLP 381 (467)
T ss_pred CceeeecchhhhccchhHHHHHHHhhcccCC
Confidence 2499999999999999999999999985444
No 5
>KOG2462|consensus
Probab=99.92 E-value=4.2e-26 Score=203.65 Aligned_cols=137 Identities=28% Similarity=0.640 Sum_probs=124.0
Q ss_pred cccccccccccCChHHHHHHHhhhccccCcchhhhhhhhhhhhhhhHHHHhhcccCCCCCcccccccccccchHHHHHHH
Q psy8169 505 IIQCRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIPCELCYKTFTRKDSLRKHM 584 (843)
Q Consensus 505 ~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~ 584 (843)
.|+|+.||+.+.+..+|.+|.+. |. .....+.|.|.+||+.|.+...|+.|+
T Consensus 130 r~~c~eCgk~ysT~snLsrHkQ~-H~---------------------------~~~s~ka~~C~~C~K~YvSmpALkMHi 181 (279)
T KOG2462|consen 130 RYKCPECGKSYSTSSNLSRHKQT-HR---------------------------SLDSKKAFSCKYCGKVYVSMPALKMHI 181 (279)
T ss_pred ceeccccccccccccccchhhcc-cc---------------------------cccccccccCCCCCceeeehHHHhhHh
Confidence 49999999999999999999998 65 222267899999999999999999999
Q ss_pred HHhhccCCCCCCCCCCCCCCCcchhhhccCCcccccCccccCcccccCCCcccccCCcCCCccccCCCCCCCCCCCCCCC
Q psy8169 585 KIFHTRRNPSANSGNSGTSAPPAVKLEQNGGEKVENSTSVENSTSVENSTSVENSANVENTSSVDNRTSVGPVAPIDRIP 664 (843)
Q Consensus 585 ~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 664 (843)
++ |+. | +.
T Consensus 182 rT-H~l-----------------------------------------------------------------~------c~ 189 (279)
T KOG2462|consen 182 RT-HTL-----------------------------------------------------------------P------CE 189 (279)
T ss_pred hc-cCC-----------------------------------------------------------------C------cc
Confidence 99 541 3 89
Q ss_pred CccccccccchhhhhhhhhccccCCCCCCccchhhcccccccccccccccccchhhhhhhHHHHhhhhhhhcCCCCCCcc
Q psy8169 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDSLKKHNRIFHGGADPKVM 744 (843)
Q Consensus 665 C~~C~~~f~~~~~L~~H~~~~H~~~~p~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~ 744 (843)
|.+||+.|....-|+-|+|+ |+|+|| |.|++|+++|+++++|+.||++|.+ .++
T Consensus 190 C~iCGKaFSRPWLLQGHiRT-HTGEKP---------------------F~C~hC~kAFADRSNLRAHmQTHS~-~K~--- 243 (279)
T KOG2462|consen 190 CGICGKAFSRPWLLQGHIRT-HTGEKP---------------------FSCPHCGKAFADRSNLRAHMQTHSD-VKK--- 243 (279)
T ss_pred cccccccccchHHhhccccc-ccCCCC---------------------ccCCcccchhcchHHHHHHHHhhcC-Ccc---
Confidence 99999999999999999999 999999 9999999999999999999999655 666
Q ss_pred hhhhhcCCcceeeeeecCCCCCCCCccccchhhchhhhhhhhhhhHHHHHhHh
Q psy8169 745 DEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNRTFTRNYNLKKHMKTV 797 (843)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~F~~~~~L~~H~~~~ 797 (843)
|+|..|+++|..++.|.+|...-
T Consensus 244 ------------------------------~qC~~C~KsFsl~SyLnKH~ES~ 266 (279)
T KOG2462|consen 244 ------------------------------HQCPRCGKSFALKSYLNKHSESA 266 (279)
T ss_pred ------------------------------ccCcchhhHHHHHHHHHHhhhhc
Confidence 99999999999999999998653
No 6
>KOG3623|consensus
Probab=99.91 E-value=8.3e-24 Score=211.57 Aligned_cols=108 Identities=28% Similarity=0.636 Sum_probs=100.9
Q ss_pred cccCCcchhccCChhHHHHhHhhhcCCCCcccccccccccccCHHHHHHHHhhcCC--------------CcccccchhH
Q psy8169 124 LHECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHNG--------------PKYTCEICAK 189 (843)
Q Consensus 124 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~--------------~~~~C~~C~~ 189 (843)
...|++|+..+.....|+.|++-.|...+..|.|..|.++|.+...|.+||.+|.. ++|+|..|++
T Consensus 210 lltcpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKFKCtECgK 289 (1007)
T KOG3623|consen 210 LLTCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKFKCTECGK 289 (1007)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccccccccch
Confidence 36799999999999999999998887788889999999999999999999999952 3599999999
Q ss_pred hhcCHHHHHHHHhhccCccccCccccCcccccccchhhHHHhhhh
Q psy8169 190 EFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHIEN 234 (843)
Q Consensus 190 ~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~ 234 (843)
.|..+..|+.|+++|.|+ ++|.|+.|+++|.....+..||..
T Consensus 290 AFKfKHHLKEHlRIHSGE---KPfeCpnCkKRFSHSGSySSHmSS 331 (1007)
T KOG3623|consen 290 AFKFKHHLKEHLRIHSGE---KPFECPNCKKRFSHSGSYSSHMSS 331 (1007)
T ss_pred hhhhHHHHHhhheeecCC---CCcCCcccccccccCCcccccccc
Confidence 999999999999999999 999999999999999999999843
No 7
>KOG2462|consensus
Probab=99.90 E-value=2.8e-24 Score=192.02 Aligned_cols=139 Identities=30% Similarity=0.673 Sum_probs=123.7
Q ss_pred CCCceecccccccccChHHHHHHHHhhccCCCCcccccccCCCCcchhhhHhhhccCCCCCCcccccccccccCChHHHH
Q psy8169 443 ANKIIQCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQCRICSKTFTRKDSLR 522 (843)
Q Consensus 443 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~ 522 (843)
....|+|+.||+.+.+..+|.+|.+. |.... ..+.+.|++|++.|.+..+|.
T Consensus 127 ~~~r~~c~eCgk~ysT~snLsrHkQ~-H~~~~---------------------------s~ka~~C~~C~K~YvSmpALk 178 (279)
T KOG2462|consen 127 KHPRYKCPECGKSYSTSSNLSRHKQT-HRSLD---------------------------SKKAFSCKYCGKVYVSMPALK 178 (279)
T ss_pred cCCceeccccccccccccccchhhcc-ccccc---------------------------ccccccCCCCCceeeehHHHh
Confidence 44579999999999999999999998 54321 112289999999999999999
Q ss_pred HHHhhhccccCcchhhhhhhhhhhhhhhHHHHhhcccCCCCCcccccccccccchHHHHHHHHHhhccCCCCCCCCCCCC
Q psy8169 523 KHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIPCELCYKTFTRKDSLRKHMKIFHTRRNPSANSGNSGT 602 (843)
Q Consensus 523 ~H~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~ 602 (843)
+|+|+ |. -++.|.+||+.|.+...|+-|+++ |+
T Consensus 179 MHirT-H~--------------------------------l~c~C~iCGKaFSRPWLLQGHiRT-HT------------- 211 (279)
T KOG2462|consen 179 MHIRT-HT--------------------------------LPCECGICGKAFSRPWLLQGHIRT-HT------------- 211 (279)
T ss_pred hHhhc-cC--------------------------------CCcccccccccccchHHhhccccc-cc-------------
Confidence 99998 53 489999999999999999999999 77
Q ss_pred CCCcchhhhccCCcccccCccccCcccccCCCcccccCCcCCCccccCCCCCCCCCCCCCCCCccccccccchhhhhhhh
Q psy8169 603 SAPPAVKLEQNGGEKVENSTSVENSTSVENSTSVENSANVENTSSVDNRTSVGPVAPIDRIPCTLCDKTFTRKDSLKKHI 682 (843)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~C~~C~~~f~~~~~L~~H~ 682 (843)
|++ | |.|++|++.|.++++|+.||
T Consensus 212 ------------GEK--------------------------------------P------F~C~hC~kAFADRSNLRAHm 235 (279)
T KOG2462|consen 212 ------------GEK--------------------------------------P------FSCPHCGKAFADRSNLRAHM 235 (279)
T ss_pred ------------CCC--------------------------------------C------ccCCcccchhcchHHHHHHH
Confidence 555 5 99999999999999999999
Q ss_pred hccccCCCCCCccchhhcccccccccccccccccchhhhhhhHHHHhhhhhh
Q psy8169 683 RIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDSLKKHNRI 734 (843)
Q Consensus 683 ~~~H~~~~p~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~ 734 (843)
++ |.+.++ |+|..|+|+|+.++.|.+|...
T Consensus 236 QT-HS~~K~---------------------~qC~~C~KsFsl~SyLnKH~ES 265 (279)
T KOG2462|consen 236 QT-HSDVKK---------------------HQCPRCGKSFALKSYLNKHSES 265 (279)
T ss_pred Hh-hcCCcc---------------------ccCcchhhHHHHHHHHHHhhhh
Confidence 99 999988 9999999999999999999754
No 8
>KOG3623|consensus
Probab=99.83 E-value=5.3e-21 Score=191.75 Aligned_cols=108 Identities=29% Similarity=0.618 Sum_probs=95.9
Q ss_pred ccccccchhhcCCHHHHHHHHhhccCCCCCcccccccccccCCHHHHHHhHHhhccC-------------CCceeCCCCC
Q psy8169 17 NHMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQR-------------LKLHECDLCG 83 (843)
Q Consensus 17 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~-------------~~~~~C~~C~ 83 (843)
...|++|++.+.....|+.|++.-+.+.+.-|.|..|.++|.+...|.+|+ ..|.. .+.|+|.+|+
T Consensus 210 lltcpycdrgykrltslkeHikyrhekne~nfsC~lCsytFAyRtQLErhm-~~hkpg~dqa~sltqsa~lRKFKCtECg 288 (1007)
T KOG3623|consen 210 LLTCPYCDRGYKRLTSLKEHIKYRHEKNEPNFSCMLCSYTFAYRTQLERHM-QLHKPGGDQAISLTQSALLRKFKCTECG 288 (1007)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhhhhhhHHHHHHHH-HhhcCCCcccccccchhhhccccccccc
Confidence 468999999999999999999865555567899999999999999999998 55633 3579999999
Q ss_pred CcccchhhHHhhhcCCCCCCCCCChHHHhhhhhhhhcCCCcccCCcchhccCChhHHHHhHh
Q psy8169 84 KNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRHLE 145 (843)
Q Consensus 84 ~~f~~~~~l~~H~~~~~~~~~~~~~~~l~~h~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~ 145 (843)
++|..+..|+.|+ +||.|+|||.|+.|++.|+....+..||.
T Consensus 289 KAFKfKHHLKEHl--------------------RIHSGEKPfeCpnCkKRFSHSGSySSHmS 330 (1007)
T KOG3623|consen 289 KAFKFKHHLKEHL--------------------RIHSGEKPFECPNCKKRFSHSGSYSSHMS 330 (1007)
T ss_pred hhhhhHHHHHhhh--------------------eeecCCCCcCCcccccccccCCccccccc
Confidence 9999999997666 89999999999999999999999999985
No 9
>KOG3576|consensus
Probab=99.63 E-value=1e-16 Score=134.88 Aligned_cols=82 Identities=39% Similarity=0.799 Sum_probs=62.6
Q ss_pred CcccccccccccCCHHHHHHhHHhhccCCCceeCCCCCCcccchhhHHhhhcCCCCCCCCCChHHHhhhhhhhhcCCCcc
Q psy8169 46 KRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRLKLH 125 (843)
Q Consensus 46 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~l~~h~~~~h~~~~~~ 125 (843)
-.|.|.+|++.|.-+..|.+|+ ..|...+.|.|..||+.|....+|++|+ +.|++.+||
T Consensus 116 d~ftCrvCgK~F~lQRmlnrh~-kch~~vkr~lct~cgkgfndtfdlkrh~--------------------rthtgvrpy 174 (267)
T KOG3576|consen 116 DSFTCRVCGKKFGLQRMLNRHL-KCHSDVKRHLCTFCGKGFNDTFDLKRHT--------------------RTHTGVRPY 174 (267)
T ss_pred CeeeeehhhhhhhHHHHHHHHh-hhccHHHHHHHhhccCcccchhhhhhhh--------------------ccccCcccc
Confidence 4577777777777777777777 6777777777777777777777777666 667777777
Q ss_pred cCCcchhccCChhHHHHhHhhhc
Q psy8169 126 ECDLCGKNFSQRNNLKRHLEEVH 148 (843)
Q Consensus 126 ~C~~C~~~f~~~~~l~~H~~~~h 148 (843)
+|..|++.|...-.|..|++.+|
T Consensus 175 kc~~c~kaftqrcsleshl~kvh 197 (267)
T KOG3576|consen 175 KCSLCEKAFTQRCSLESHLKKVH 197 (267)
T ss_pred chhhhhHHHHhhccHHHHHHHHc
Confidence 77777777777777777777766
No 10
>KOG3576|consensus
Probab=99.60 E-value=3.6e-16 Score=131.68 Aligned_cols=127 Identities=27% Similarity=0.473 Sum_probs=96.6
Q ss_pred CCcccccccccccccCHHHHHHHHhhcCCCc-ccccchhHhhcCHHHHHHHHhhccCccccCccccCcccccccchhhHH
Q psy8169 151 DGMKFECYVCSKVLATSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLK 229 (843)
Q Consensus 151 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~~~f~~~~~l~ 229 (843)
+...|.|.+|++.|.-...|.+||+.|...+ |-|..||+.|...-.|.+|+++|++. +||+|..|++.|..+-.|.
T Consensus 114 d~d~ftCrvCgK~F~lQRmlnrh~kch~~vkr~lct~cgkgfndtfdlkrh~rthtgv---rpykc~~c~kaftqrcsle 190 (267)
T KOG3576|consen 114 DQDSFTCRVCGKKFGLQRMLNRHLKCHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGV---RPYKCSLCEKAFTQRCSLE 190 (267)
T ss_pred CCCeeeeehhhhhhhHHHHHHHHhhhccHHHHHHHhhccCcccchhhhhhhhccccCc---cccchhhhhHHHHhhccHH
Confidence 4456888888888888888888888888755 88889999998888899999999887 8899999999999999999
Q ss_pred HhhhhcCCCccCCccccCCcccccCCHHHHHHHHhhhcCCCCCcceeecCcChhccCChHHHHHHHHHhcCCCce
Q psy8169 230 AHIENNHLDYSCLECKAVGEEISFDTKKNLLLHLKTKHKNVISNVYLTCLICFKTFLTEVDLGKHMKMHMDDNQI 304 (843)
Q Consensus 230 ~H~~~~H~~~~C~~C~~~~~~~~~~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~ 304 (843)
.|++++|.. . .... .+.. ....|.|..||.+-.....+..|++.|+..-++
T Consensus 191 shl~kvhgv-------------~----~~ya--yker-----r~kl~vcedcg~t~~~~e~~~~h~~~~hp~Spa 241 (267)
T KOG3576|consen 191 SHLKKVHGV-------------Q----HQYA--YKER-----RAKLYVCEDCGYTSERPEVYYLHLKLHHPFSPA 241 (267)
T ss_pred HHHHHHcCc-------------h----HHHH--HHHh-----hhheeeecccCCCCCChhHHHHHHHhcCCCCHH
Confidence 998888721 0 0000 0110 111588888888888888888888887766554
No 11
>KOG1146|consensus
Probab=99.19 E-value=4.8e-11 Score=130.77 Aligned_cols=123 Identities=15% Similarity=0.208 Sum_probs=71.2
Q ss_pred CCccccccccchhhhhhhhhccccCCC----CCCccchhhccccccc---ccccccccccchhhhhhhHHHHhhhhhhhc
Q psy8169 664 PCTLCDKTFTRKDSLKKHIRIFHTQNQ----PQHTNVIEVALGARAN---AAFIDRIRCELCDKSFTRKDSLKKHNRIFH 736 (843)
Q Consensus 664 ~C~~C~~~f~~~~~L~~H~~~~H~~~~----p~~~~~~~~~~~~~~~---~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H 736 (843)
.|..|...|.....+..|-+- -..+. -+.|..++..+..... .....+|.|..|...|.....|..|.+..-
T Consensus 1230 ~~~~~e~~f~~~~~~~~~a~~-~~~~~~~sGe~~c~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~k~~ 1308 (1406)
T KOG1146|consen 1230 LPNALEQPFPQEPEPTATAPP-KPPELPASGEGECGAVDELLTPSFGISTLDVTHRYLCRQCKMAFDGEAPLTAHQRKFC 1308 (1406)
T ss_pred cHHhhhcCccCcccccccCCC-CCCcCcCCCcchhhhccccccCccceeecccchhHHHHHHHhhhcchhHHHHHHHHHH
Confidence 366666666666666555432 11111 1345555554443333 334467999999999999999999984422
Q ss_pred CCCCCCcchhhhhcCCcceeeeeecCCCCCCCCccccchhhchhhhhhhhhhhHHHHHhHhhccCCCCc
Q psy8169 737 GGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNRTFTRNYNLKKHMKTVHKIDDNEP 805 (843)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~F~~~~~L~~H~~~~H~~~~~~~ 805 (843)
---++ . .....-.+. ......| |.+|...|.....|..|||..+......+
T Consensus 1309 ~~~~~--~----~~~~~~~l~-----------~~d~~~~-c~~c~~~~~~~~alqihm~~~~~~~kt~~ 1359 (1406)
T KOG1146|consen 1309 FAGRG--S----GGSMPPPLR-----------VPDCTYH-CLACEVLLSGREALQIHMRSSAHRRKTAP 1359 (1406)
T ss_pred hccCc--c----ccCCCCccc-----------Ccccccc-chHHHhhcchhHHHHHHHHHhhhcccCCC
Confidence 10000 0 000000000 0111225 99999999999999999999987544444
No 12
>PLN03086 PRLI-interacting factor K; Provisional
Probab=99.09 E-value=1.1e-10 Score=120.68 Aligned_cols=78 Identities=22% Similarity=0.510 Sum_probs=66.1
Q ss_pred CCCccccccccchhhhhhhhhccccCCCCCCccchhhcccccccccccccccccchhhhhh----------hHHHHhhhh
Q psy8169 663 IPCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFT----------RKDSLKKHN 732 (843)
Q Consensus 663 ~~C~~C~~~f~~~~~L~~H~~~~H~~~~p~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~----------~~~~L~~H~ 732 (843)
+.|+ ||+.+ .+..|..|+.. |...+| +.|.+|++.|. ..+.|..|.
T Consensus 479 v~Cp-Cg~~~-~R~~L~~H~~t-hCp~Kp---------------------i~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE 534 (567)
T PLN03086 479 LQCP-CGVVL-EKEQMVQHQAS-TCPLRL---------------------ITCRFCGDMVQAGGSAMDVRDRLRGMSEHE 534 (567)
T ss_pred ccCC-CCCCc-chhHHHhhhhc-cCCCCc---------------------eeCCCCCCccccCccccchhhhhhhHHHHH
Confidence 8999 99755 67999999988 888888 99999999995 245899998
Q ss_pred hhhcCCCCCCcchhhhhcCCcceeeeeecCCCCCCCCccccchhhchhhhhhhhhhhHHHHHhHhhcc
Q psy8169 733 RIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNRTFTRNYNLKKHMKTVHKI 800 (843)
Q Consensus 733 ~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~F~~~~~L~~H~~~~H~~ 800 (843)
.. .+ .++ +.|..||+.|.. ..|..|+..+|+.
T Consensus 535 ~~-CG-~rt---------------------------------~~C~~Cgk~Vrl-rdm~~H~~~~h~~ 566 (567)
T PLN03086 535 SI-CG-SRT---------------------------------APCDSCGRSVML-KEMDIHQIAVHQK 566 (567)
T ss_pred Hh-cC-Ccc---------------------------------eEccccCCeeee-hhHHHHHHHhhcC
Confidence 87 44 666 889999999876 6799999999974
No 13
>KOG1146|consensus
Probab=99.05 E-value=1.8e-10 Score=126.37 Aligned_cols=86 Identities=19% Similarity=0.440 Sum_probs=70.2
Q ss_pred cCCCCccccccchhhcCCHHHHHHHHhhccCC-----------------------CCCcccccccccccCCHHHHHHhHH
Q psy8169 12 HEYVENHMCELCYKVFESRENLMRHLKIHDDK-----------------------ESKRFKCEQCDKRFSSNAELNKHSS 68 (843)
Q Consensus 12 h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~-----------------------~~~~~~C~~C~~~f~~~~~l~~H~~ 68 (843)
+...+.|+|+.|++.|+....|..||+.-+.+ ..++|.|..|+.+++++.+|.+|++
T Consensus 460 ~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~Lsihlq 539 (1406)
T KOG1146|consen 460 HSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQ 539 (1406)
T ss_pred ecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeeeeeeecchHHHHHHH
Confidence 45568899999999999999999999872211 2378999999999999999999986
Q ss_pred hh-c-----------------------------------------cCCCceeCCCCCCcccchhhHHhhhc
Q psy8169 69 AI-H-----------------------------------------QRLKLHECDLCGKNFSQRNNLKRQAN 97 (843)
Q Consensus 69 ~~-h-----------------------------------------~~~~~~~C~~C~~~f~~~~~l~~H~~ 97 (843)
.. | .....+.|..|++...-..+|+.||.
T Consensus 540 S~~h~~~lee~~~~~g~~v~~~~~~v~s~~P~~ag~~~~ags~~pktkP~~~C~vc~yetniarnlrihmt 610 (1406)
T KOG1146|consen 540 SDLHRNELEEAEENAGEQVRLLPASVTSAVPEEAGLGPSAGSSGPKTKPSWRCEVCSYETNIARNLRIHMT 610 (1406)
T ss_pred HHhhHHHHHHHHhccccchhhhhhhhcccCcccccCCCCCCCCCCCCCCCcchhhhcchhhhhhccccccc
Confidence 43 2 11235899999999999999999986
No 14
>PLN03086 PRLI-interacting factor K; Provisional
Probab=99.04 E-value=5.5e-10 Score=115.53 Aligned_cols=144 Identities=20% Similarity=0.500 Sum_probs=103.2
Q ss_pred ccccccccccCCHHHHHHhHHhhccCCCceeCCC--CCCcccchhhHHhhhcCCCCCCCCCChHHHhhhhhhhhcCCCcc
Q psy8169 48 FKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDL--CGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRLKLH 125 (843)
Q Consensus 48 ~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~l~~h~~~~h~~~~~~ 125 (843)
-.|+.|..... ...|..|. ... .-..-.|+. |+..|.. ..+ .+.+
T Consensus 408 V~C~NC~~~i~-l~~l~lHe-~~C-~r~~V~Cp~~~Cg~v~~r-~el-----------------------------~~H~ 454 (567)
T PLN03086 408 VECRNCKHYIP-SRSIALHE-AYC-SRHNVVCPHDGCGIVLRV-EEA-----------------------------KNHV 454 (567)
T ss_pred EECCCCCCccc-hhHHHHHH-hhC-CCcceeCCcccccceeec-ccc-----------------------------ccCc
Confidence 46888876654 45667886 322 234456874 8888732 222 2335
Q ss_pred cCCcchhccCChhHHHHhHhhhcCCCCcccccccccccccCHHHHHHHHhhcCCCc-ccccchhHhhc----------CH
Q psy8169 126 ECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHNGPK-YTCEICAKEFT----------RV 194 (843)
Q Consensus 126 ~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~-~~C~~C~~~f~----------~~ 194 (843)
.|+.|++.|. ...|..|++.+| .+|.|+ |++.+ .+..|..|+.+|.+.+ +.|..|++.|. ..
T Consensus 455 ~C~~Cgk~f~-~s~LekH~~~~H----kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~ 527 (567)
T PLN03086 455 HCEKCGQAFQ-QGEMEKHMKVFH----EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAMDVRDRL 527 (567)
T ss_pred cCCCCCCccc-hHHHHHHHHhcC----CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCccccchhhhh
Confidence 7999999885 678899988543 678999 99755 6789999998887754 99999998884 24
Q ss_pred HHHHHHHhhccCccccCccccCcccccccchhhHHHhhhhcC
Q psy8169 195 YELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHIENNH 236 (843)
Q Consensus 195 ~~L~~H~~~h~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H 236 (843)
..|..|...+ +. +++.|..|++.+..+ .|..|+...|
T Consensus 528 s~Lt~HE~~C-G~---rt~~C~~Cgk~Vrlr-dm~~H~~~~h 564 (567)
T PLN03086 528 RGMSEHESIC-GS---RTAPCDSCGRSVMLK-EMDIHQIAVH 564 (567)
T ss_pred hhHHHHHHhc-CC---cceEccccCCeeeeh-hHHHHHHHhh
Confidence 5788888886 44 789999999887665 5788876665
No 15
>KOG3993|consensus
Probab=99.00 E-value=3.3e-10 Score=107.98 Aligned_cols=112 Identities=21% Similarity=0.375 Sum_probs=75.2
Q ss_pred ceecccccccccChHHHHHHH--HhhccCCCCcccccccCCCCcchhhhHhhhccCCCCCCcccccccccccCChHHHHH
Q psy8169 446 IIQCHICLKTFAKKDSLKKHM--KVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQCRICSKTFTRKDSLRK 523 (843)
Q Consensus 446 ~~~C~~C~~~f~~~~~L~~H~--~~~H~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~ 523 (843)
-|.|.+|...|.+.-.|.+|. +++|.. |+|+.|+++|....+|..
T Consensus 267 dyiCqLCK~kYeD~F~LAQHrC~RIV~vE---------------------------------YrCPEC~KVFsCPANLAS 313 (500)
T KOG3993|consen 267 DYICQLCKEKYEDAFALAQHRCPRIVHVE---------------------------------YRCPECDKVFSCPANLAS 313 (500)
T ss_pred HHHHHHHHHhhhhHHHHhhccCCeeEEee---------------------------------ecCCcccccccCchhhhh
Confidence 499999999999999999995 444432 999999999999999999
Q ss_pred HHhhhccccCcchhhhhhhhh---hhhhhhHHHHhhcccCCCCCcccccccccccchHHHHHHHHHhhccC
Q psy8169 524 HMRRFHIINDTNVKKEFTEGQ---INRNMLDVILKESGHEIKSRIPCELCYKTFTRKDSLRKHMKIFHTRR 591 (843)
Q Consensus 524 H~~~~H~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~ 591 (843)
|.|- |.-............. ..........+........-|.|..|+++|.+...|++|+.+||...
T Consensus 314 HRRW-HKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~~ 383 (500)
T KOG3993|consen 314 HRRW-HKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRAP 383 (500)
T ss_pred hhcc-cCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhccc
Confidence 9887 7533322210000000 00000000000111122458999999999999999999999976543
No 16
>PHA00733 hypothetical protein
Probab=98.94 E-value=2.8e-10 Score=94.70 Aligned_cols=84 Identities=21% Similarity=0.369 Sum_probs=69.9
Q ss_pred CCCCCccccccccchhhhhhh--hhc--cccCCCCCCccchhhcccccccccccccccccchhhhhhhHHHHhhhhhhhc
Q psy8169 661 DRIPCTLCDKTFTRKDSLKKH--IRI--FHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDSLKKHNRIFH 736 (843)
Q Consensus 661 ~~~~C~~C~~~f~~~~~L~~H--~~~--~H~~~~p~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H 736 (843)
+++.|.+|+..|.+...|..| ++. .+.+.+| |.|+.|++.|.+...|..|++.+
T Consensus 39 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kP---------------------y~C~~Cgk~Fss~s~L~~H~r~h- 96 (128)
T PHA00733 39 KRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSP---------------------YVCPLCLMPFSSSVSLKQHIRYT- 96 (128)
T ss_pred hhHHHHHHhhhccChhhhcchHHHHhhcccCCCCC---------------------ccCCCCCCcCCCHHHHHHHHhcC-
Confidence 448999999999988887777 222 2334566 99999999999999999999863
Q ss_pred CCCCCCcchhhhhcCCcceeeeeecCCCCCCCCccccchhhchhhhhhhhhhhHHHHHhHhhccC
Q psy8169 737 GGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNRTFTRNYNLKKHMKTVHKID 801 (843)
Q Consensus 737 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~F~~~~~L~~H~~~~H~~~ 801 (843)
..+ |.|.+|++.|.....|..|++..|++.
T Consensus 97 --~~~---------------------------------~~C~~CgK~F~~~~sL~~H~~~~h~~~ 126 (128)
T PHA00733 97 --EHS---------------------------------KVCPVCGKEFRNTDSTLDHVCKKHNIC 126 (128)
T ss_pred --CcC---------------------------------ccCCCCCCccCCHHHHHHHHHHhcCcc
Confidence 223 889999999999999999999999975
No 17
>PHA00733 hypothetical protein
Probab=98.81 E-value=4.8e-09 Score=87.38 Aligned_cols=52 Identities=27% Similarity=0.604 Sum_probs=28.5
Q ss_pred CcccccchhHhhcCHHHHHHHHhhccCccccCccccCcccccccchhhHHHhhhhcC
Q psy8169 180 PKYTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHIENNH 236 (843)
Q Consensus 180 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H 236 (843)
.+|.|+.|++.|.+...|..|++.|. .+|.|+.|++.|.....|..|+...|
T Consensus 72 kPy~C~~Cgk~Fss~s~L~~H~r~h~-----~~~~C~~CgK~F~~~~sL~~H~~~~h 123 (128)
T PHA00733 72 SPYVCPLCLMPFSSSVSLKQHIRYTE-----HSKVCPVCGKEFRNTDSTLDHVCKKH 123 (128)
T ss_pred CCccCCCCCCcCCCHHHHHHHHhcCC-----cCccCCCCCCccCCHHHHHHHHHHhc
Confidence 34555555555555555555555441 23555666666665555555555554
No 18
>PHA02768 hypothetical protein; Provisional
Probab=98.75 E-value=3.2e-09 Score=70.50 Aligned_cols=43 Identities=21% Similarity=0.557 Sum_probs=29.3
Q ss_pred ccccccchhhcCCHHHHHHHHhhccCCCCCcccccccccccCCHHHH
Q psy8169 17 NHMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAEL 63 (843)
Q Consensus 17 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l 63 (843)
.|.|++||+.|....+|..||++|+ ++|+|..|++.|...+.|
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~r~H~----k~~kc~~C~k~f~~~s~l 47 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHLRKHN----TNLKLSNCKRISLRTGEY 47 (55)
T ss_pred ccCcchhCCeeccHHHHHHHHHhcC----CcccCCcccceeccccee
Confidence 4677777777777777777777775 467777777776655544
No 19
>KOG3993|consensus
Probab=98.64 E-value=3e-09 Score=101.60 Aligned_cols=112 Identities=19% Similarity=0.249 Sum_probs=67.9
Q ss_pred CCcccCCcchhccCChhHHHHhHhhhcCCCCc---------------ccccccccccccCHHHHHHHHhhcCC--Ccccc
Q psy8169 122 LKLHECDLCGKNFSQRNNLKRHLEEVHRTDGM---------------KFECYVCSKVLATSHSLKRHLLIHNG--PKYTC 184 (843)
Q Consensus 122 ~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~---------------~~~C~~C~~~f~~~~~l~~H~~~h~~--~~~~C 184 (843)
...|.|.+|++.|.....|+.|+..+|..... .+.|..|.-.+.....--.+...+.+ ....|
T Consensus 354 ~gi~~C~~C~KkFrRqAYLrKHqlthq~~~~~k~~a~~f~~s~~~~l~~~~~~~a~h~~a~~~~g~~vl~~a~sael~~p 433 (500)
T KOG3993|consen 354 SGIFSCHTCGKKFRRQAYLRKHQLTHQRAPLAKEKAPKFLLSRVIPLMHFNQAVATHSSASDSHGDEVLYVAGSAELELP 433 (500)
T ss_pred CceeecHHhhhhhHHHHHHHHhHHhhhccccchhcccCcchhhcccccccccccccccccccccccceeeeeccccccCC
Confidence 34799999999999999999997755532211 13344444444333222222222222 12567
Q ss_pred cchhHhhcCHHHHHHHHhhccCccccCccccCcccccccchhhHHHhhhhcC
Q psy8169 185 EICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHIENNH 236 (843)
Q Consensus 185 ~~C~~~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~H 236 (843)
++|+--+.+...-.-+.+.-... ..|.|.+|.-.|.+...|.+|+...|
T Consensus 434 p~~~~ppsss~~sgg~~rlg~~~---q~f~~ky~~atfyss~~ltrhin~~H 482 (500)
T KOG3993|consen 434 PYDGSPPSSSGSSGGYGRLGIAE---QGFTCKYCPATFYSSPGLTRHINKCH 482 (500)
T ss_pred CCCCCCcccCCCCCccccccchh---hccccccchHhhhcCcchHhHhhhcC
Confidence 77776665554433343333333 56888899999988888888886666
No 20
>PHA02768 hypothetical protein; Provisional
Probab=98.62 E-value=1.7e-08 Score=67.16 Aligned_cols=44 Identities=16% Similarity=0.347 Sum_probs=40.3
Q ss_pred eeecCcChhccCChHHHHHHHHHhcCCCceeccccchhcCChhhHH
Q psy8169 275 YLTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLK 320 (843)
Q Consensus 275 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~ 320 (843)
.|.|+.||+.|.....|..|+++|. ++|+|..|++.|...+.|.
T Consensus 5 ~y~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~~~s~l~ 48 (55)
T PHA02768 5 GYECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISLRTGEYI 48 (55)
T ss_pred ccCcchhCCeeccHHHHHHHHHhcC--CcccCCcccceecccceeE
Confidence 5899999999999999999999999 6999999999999877664
No 21
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.40 E-value=2e-07 Score=52.77 Aligned_cols=26 Identities=35% Similarity=0.875 Sum_probs=23.8
Q ss_pred HHHHHHHHhcCCCceeccccchhcCC
Q psy8169 290 DLGKHMKMHMDDNQIQCRFCNKYFSR 315 (843)
Q Consensus 290 ~L~~H~~~H~~~~~~~C~~C~~~f~~ 315 (843)
+|..|+++|++++||.|+.|+++|.+
T Consensus 1 ~l~~H~~~H~~~k~~~C~~C~k~F~~ 26 (26)
T PF13465_consen 1 NLRRHMRTHTGEKPYKCPYCGKSFSN 26 (26)
T ss_dssp HHHHHHHHHSSSSSEEESSSSEEESS
T ss_pred CHHHHhhhcCCCCCCCCCCCcCeeCc
Confidence 48899999999999999999999964
No 22
>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A ....
Probab=98.37 E-value=1.8e-07 Score=52.98 Aligned_cols=24 Identities=46% Similarity=0.942 Sum_probs=13.2
Q ss_pred HHHHHhhccCCCCCcccccccccccC
Q psy8169 33 LMRHLKIHDDKESKRFKCEQCDKRFS 58 (843)
Q Consensus 33 l~~H~~~h~~~~~~~~~C~~C~~~f~ 58 (843)
|.+||++|++ ++||.|+.|+++|.
T Consensus 2 l~~H~~~H~~--~k~~~C~~C~k~F~ 25 (26)
T PF13465_consen 2 LRRHMRTHTG--EKPYKCPYCGKSFS 25 (26)
T ss_dssp HHHHHHHHSS--SSSEEESSSSEEES
T ss_pred HHHHhhhcCC--CCCCCCCCCcCeeC
Confidence 5555555555 35555555555554
No 23
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=98.29 E-value=9.4e-07 Score=61.16 Aligned_cols=53 Identities=30% Similarity=0.560 Sum_probs=42.8
Q ss_pred cccCCcchhccCChhHHHHhHhhhcCCCCcccccccccccccCHHHHHHHHhhcCC
Q psy8169 124 LHECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHNG 179 (843)
Q Consensus 124 ~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~ 179 (843)
.|.|++|++ ..+...|..|+...|..+.+.+.|++|...+. .+|..||..+++
T Consensus 2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H~ 54 (54)
T PF05605_consen 2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQHR 54 (54)
T ss_pred CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhcC
Confidence 488999999 56678899999888876677899999998654 488889887653
No 24
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=98.28 E-value=7.4e-07 Score=61.68 Aligned_cols=52 Identities=27% Similarity=0.483 Sum_probs=43.9
Q ss_pred CCCccccccccchhhhhhhhhccccCCCCCCccchhhcccccccccccccccccchhhhhhhHHHHhhhhhhhcC
Q psy8169 663 IPCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDSLKKHNRIFHG 737 (843)
Q Consensus 663 ~~C~~C~~~f~~~~~L~~H~~~~H~~~~p~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~ 737 (843)
|.|++|++ ..+...|..|+...|..+.. .+.|++|...+. ..|..|+...|+
T Consensus 3 f~CP~C~~-~~~~~~L~~H~~~~H~~~~~--------------------~v~CPiC~~~~~--~~l~~Hl~~~H~ 54 (54)
T PF05605_consen 3 FTCPYCGK-GFSESSLVEHCEDEHRSESK--------------------NVVCPICSSRVT--DNLIRHLNSQHR 54 (54)
T ss_pred cCCCCCCC-ccCHHHHHHHHHhHCcCCCC--------------------CccCCCchhhhh--hHHHHHHHHhcC
Confidence 99999999 56678999999998987643 289999999766 499999998884
No 25
>PHA00732 hypothetical protein
Probab=98.21 E-value=4.2e-07 Score=67.74 Aligned_cols=46 Identities=26% Similarity=0.590 Sum_probs=39.6
Q ss_pred ccccchhhhhhhHHHHhhhhhhhcCCCCCCcchhhhhcCCcceeeeeecCCCCCCCCccccchhhchhhhhhhhhhhHHH
Q psy8169 713 IRCELCDKSFTRKDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNRTFTRNYNLKK 792 (843)
Q Consensus 713 ~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~F~~~~~L~~ 792 (843)
|+|+.|++.|.+...|..|++.+|.+ +.|+.||++|. .|..
T Consensus 2 y~C~~Cgk~F~s~s~Lk~H~r~~H~~------------------------------------~~C~~CgKsF~---~l~~ 42 (79)
T PHA00732 2 FKCPICGFTTVTLFALKQHARRNHTL------------------------------------TKCPVCNKSYR---RLNQ 42 (79)
T ss_pred ccCCCCCCccCCHHHHHHHhhcccCC------------------------------------CccCCCCCEeC---Chhh
Confidence 89999999999999999999865541 56999999997 5999
Q ss_pred HHhHh
Q psy8169 793 HMKTV 797 (843)
Q Consensus 793 H~~~~ 797 (843)
|+++.
T Consensus 43 H~~~~ 47 (79)
T PHA00732 43 HFYSQ 47 (79)
T ss_pred hhccc
Confidence 99554
No 26
>PHA00616 hypothetical protein
Probab=98.17 E-value=1e-06 Score=55.59 Aligned_cols=35 Identities=17% Similarity=0.363 Sum_probs=27.0
Q ss_pred ccccccchhhcCCHHHHHHHHhhccCCCCCccccccc
Q psy8169 17 NHMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQC 53 (843)
Q Consensus 17 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C 53 (843)
+|+|+.||+.|..++.|..|++.|++ .++|+|+.=
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg--~~~~~~~~~ 35 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHK--QNKLTLEYF 35 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcC--CCccceeEE
Confidence 57888888888888888888888887 477777653
No 27
>PHA00732 hypothetical protein
Probab=98.10 E-value=1.7e-06 Score=64.58 Aligned_cols=44 Identities=27% Similarity=0.466 Sum_probs=34.4
Q ss_pred ccccccchhhcCCHHHHHHHHhh-ccCCCCCcccccccccccCCHHHHHHhHH
Q psy8169 17 NHMCELCYKVFESRENLMRHLKI-HDDKESKRFKCEQCDKRFSSNAELNKHSS 68 (843)
Q Consensus 17 ~~~C~~C~~~f~~~~~l~~H~~~-h~~~~~~~~~C~~C~~~f~~~~~l~~H~~ 68 (843)
+|.|+.|++.|.+..+|..|++. |. ++.|+.|++.|. .|..|++
T Consensus 1 py~C~~Cgk~F~s~s~Lk~H~r~~H~-----~~~C~~CgKsF~---~l~~H~~ 45 (79)
T PHA00732 1 MFKCPICGFTTVTLFALKQHARRNHT-----LTKCPVCNKSYR---RLNQHFY 45 (79)
T ss_pred CccCCCCCCccCCHHHHHHHhhcccC-----CCccCCCCCEeC---Chhhhhc
Confidence 57888888888888888888874 53 357888888887 4777873
No 28
>PHA00616 hypothetical protein
Probab=98.05 E-value=2.2e-06 Score=54.08 Aligned_cols=39 Identities=21% Similarity=0.421 Sum_probs=31.6
Q ss_pred eeecCcChhccCChHHHHHHHHHhcCCCceeccccchhc
Q psy8169 275 YLTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYF 313 (843)
Q Consensus 275 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f 313 (843)
+|+|+.||+.|.....|..|++.|+++++|.|++--..|
T Consensus 1 pYqC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~~y~~f 39 (44)
T PHA00616 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEYFYIYF 39 (44)
T ss_pred CCccchhhHHHhhHHHHHHHHHHhcCCCccceeEEEEEE
Confidence 478999999999999999999999999888887644333
No 29
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.82 E-value=1e-05 Score=44.63 Aligned_cols=23 Identities=43% Similarity=0.846 Sum_probs=15.4
Q ss_pred cccccchhhcCCHHHHHHHHhhc
Q psy8169 18 HMCELCYKVFESRENLMRHLKIH 40 (843)
Q Consensus 18 ~~C~~C~~~f~~~~~l~~H~~~h 40 (843)
|.|++|+++|.++..|..|++.|
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~H 23 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRRH 23 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhHC
Confidence 56677777777777777776654
No 30
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=97.76 E-value=7.8e-06 Score=45.12 Aligned_cols=22 Identities=41% Similarity=0.937 Sum_probs=21.0
Q ss_pred hhhchhhhhhhhhhhHHHHHhH
Q psy8169 775 ILCKICNRTFTRNYNLKKHMKT 796 (843)
Q Consensus 775 ~~C~~C~~~F~~~~~L~~H~~~ 796 (843)
|.|+.|++.|.+.+.|..||+.
T Consensus 1 y~C~~C~~~f~~~~~l~~H~~~ 22 (23)
T PF00096_consen 1 YKCPICGKSFSSKSNLKRHMRR 22 (23)
T ss_dssp EEETTTTEEESSHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHhH
Confidence 5799999999999999999998
No 31
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.67 E-value=1.4e-05 Score=44.87 Aligned_cols=24 Identities=38% Similarity=0.895 Sum_probs=20.8
Q ss_pred hhhchhhhhhhhhhhHHHHHhHhh
Q psy8169 775 ILCKICNRTFTRNYNLKKHMKTVH 798 (843)
Q Consensus 775 ~~C~~C~~~F~~~~~L~~H~~~~H 798 (843)
|.|++|++.|.+...|..|++++|
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred CCCcCCCCcCCcHHHHHHHHHhhC
Confidence 579999999999999999999987
No 32
>KOG2231|consensus
Probab=97.57 E-value=0.00013 Score=77.26 Aligned_cols=97 Identities=26% Similarity=0.520 Sum_probs=59.2
Q ss_pred CHHHHHHHHhhccC-ccccCc-cccCcccccccchhhHHHhhhhcCCCccCCccc-cCCcccccCCHHHHHHHHhhhcCC
Q psy8169 193 RVYELNIHKKLHED-ESVANQ-LKCEFCGKVFLKKSNLKAHIENNHLDYSCLECK-AVGEEISFDTKKNLLLHLKTKHKN 269 (843)
Q Consensus 193 ~~~~L~~H~~~h~~-~~~~~~-~~C~~C~~~f~~~~~l~~H~~~~H~~~~C~~C~-~~~~~~~~~~~~~l~~H~~~~~~~ 269 (843)
+...|..|+..-.. +...+. -.|.+|...|.....|..|++..| |.|-.|. ..++...|.....|..|.+..|
T Consensus 161 t~~el~~h~~~gd~d~~s~rGhp~C~~C~~~fld~~el~rH~~~~h--~~chfC~~~~~~neyy~~~~dLe~HfR~~H-- 236 (669)
T KOG2231|consen 161 TRAELNLHLMFGDPDDESCRGHPLCKFCHERFLDDDELYRHLRFDH--EFCHFCDYKTGQNEYYNDYDDLEEHFRKGH-- 236 (669)
T ss_pred hHHHHHHHHhcCCCccccccCCccchhhhhhhccHHHHHHhhccce--eheeecCcccccchhcccchHHHHHhhhcC--
Confidence 44556666554322 211111 457788888888888888876666 5566664 3344556677778888888776
Q ss_pred CCCcceeecC--cCh-hccCChHHHHHHHHHhc
Q psy8169 270 VISNVYLTCL--ICF-KTFLTEVDLGKHMKMHM 299 (843)
Q Consensus 270 ~~~~~~~~C~--~C~-~~f~~~~~L~~H~~~H~ 299 (843)
|.|. .|. +.|.....+..|++.|.
T Consensus 237 ------flCE~~~C~~~~f~~~~~~ei~lk~~~ 263 (669)
T KOG2231|consen 237 ------FLCEEEFCRTKKFYVAFELEIELKAHN 263 (669)
T ss_pred ------ccccccccccceeeehhHHHHHHHhhc
Confidence 6676 564 44555556666666554
No 33
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.57 E-value=2.1e-05 Score=64.27 Aligned_cols=73 Identities=26% Similarity=0.588 Sum_probs=22.1
Q ss_pred CCccccccccchhhhhhhhhccccCCCCCCccchhh-cccccccccccccccccchhhhhhhHHHHhhhhhhhc
Q psy8169 664 PCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEV-ALGARANAAFIDRIRCELCDKSFTRKDSLKKHNRIFH 736 (843)
Q Consensus 664 ~C~~C~~~f~~~~~L~~H~~~~H~~~~p~~~~~~~~-~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H 736 (843)
+|.+|+..|.+...|..|+...|.-..+..-.+... .+...........+.|.+|++.|.+...|..||+.++
T Consensus 1 ~C~~C~~~f~~~~~l~~H~~~~H~~~~~~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~~ 74 (100)
T PF12756_consen 1 QCLFCDESFSSVDDLLQHMKKKHGFDIPDQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSKH 74 (100)
T ss_dssp ------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHTT
T ss_pred CccccccccccccccccccccccccccccccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCcc
Confidence 499999999999999999998887654421111110 1111111111224999999999999999999999753
No 34
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=97.44 E-value=4e-05 Score=42.95 Aligned_cols=24 Identities=42% Similarity=0.913 Sum_probs=20.7
Q ss_pred ccccchhhhhhhHHHHhhhhhhhc
Q psy8169 713 IRCELCDKSFTRKDSLKKHNRIFH 736 (843)
Q Consensus 713 ~~C~~C~~~f~~~~~L~~H~~~~H 736 (843)
|.|++|++.|.+...|..|++.+|
T Consensus 1 ~~C~~C~~~~~~~~~l~~H~~~~H 24 (24)
T PF13894_consen 1 FQCPICGKSFRSKSELRQHMRTHH 24 (24)
T ss_dssp EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred CCCcCCCCcCCcHHHHHHHHHhhC
Confidence 689999999999999999999876
No 35
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=97.43 E-value=6.4e-05 Score=61.42 Aligned_cols=72 Identities=25% Similarity=0.453 Sum_probs=12.9
Q ss_pred CCcchhccCChhHHHHhHhhhcCCCCcccccccccccccCHHHHHHHHhhcCCCcccccchhHhhcCHHHHHHHHhhc
Q psy8169 127 CDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHNGPKYTCEICAKEFTRVYELNIHKKLH 204 (843)
Q Consensus 127 C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~L~~H~~~h 204 (843)
|..|+..|.+...|..|+...|... .+ ....+.....+..+++.-....+.|.+|+..|.+...|..||+.+
T Consensus 2 C~~C~~~f~~~~~l~~H~~~~H~~~-~~-----~~~~l~~~~~~~~~~~~~~~~~~~C~~C~~~f~s~~~l~~Hm~~~ 73 (100)
T PF12756_consen 2 CLFCDESFSSVDDLLQHMKKKHGFD-IP-----DQKYLVDPNRLLNYLRKKVKESFRCPYCNKTFRSREALQEHMRSK 73 (100)
T ss_dssp -----------------------------------------------------SSEEBSSSS-EESSHHHHHHHHHHT
T ss_pred ccccccccccccccccccccccccc-cc-----cccccccccccccccccccCCCCCCCccCCCCcCHHHHHHHHcCc
Confidence 6666666666666666665555211 00 111222333333343333233355555555555555555555543
No 36
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=97.38 E-value=5e-05 Score=70.25 Aligned_cols=71 Identities=25% Similarity=0.466 Sum_probs=44.0
Q ss_pred CCceeCCC--CCCcccchhhHHhhhcCCCCCCCCCChHHHhhhhhhhhcCCCcccCCcchhccCChhHHHHhHh
Q psy8169 74 LKLHECDL--CGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRHLE 145 (843)
Q Consensus 74 ~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~l~~h~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~ 145 (843)
+|||+|++ |.+.+.....|+-|+....|.......+.-..+. ..-...|||+|.+|++.++....|+.|..
T Consensus 347 ~KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~~~~-~F~~~~KPYrCevC~KRYKNlNGLKYHr~ 419 (423)
T COG5189 347 GKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMN-IFSAKDKPYRCEVCDKRYKNLNGLKYHRK 419 (423)
T ss_pred CceecCCCCCchhhhccccchhhhhhccccCcccCCCCCccccc-cccccCCceeccccchhhccCccceeccc
Confidence 36666665 6666666666666665444443333222222222 22345688999999999988888888865
No 37
>KOG2231|consensus
Probab=97.29 E-value=0.00044 Score=73.44 Aligned_cols=32 Identities=38% Similarity=0.814 Sum_probs=23.2
Q ss_pred cccccccccCCHHHHHHhHHhhccCCCceeCCCCCC
Q psy8169 49 KCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGK 84 (843)
Q Consensus 49 ~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~ 84 (843)
.|.+| ..|.+...|+.|+...|. .+.|.+|-.
T Consensus 117 ~~~~c-~~~~s~~~Lk~H~~~~H~---~~~c~lC~~ 148 (669)
T KOG2231|consen 117 ECLHC-TEFKSVENLKNHMRDQHK---LHLCSLCLQ 148 (669)
T ss_pred CCccc-cchhHHHHHHHHHHHhhh---hhccccccc
Confidence 47777 777788899999876664 466777643
No 38
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.28 E-value=0.00015 Score=41.83 Aligned_cols=25 Identities=32% Similarity=0.487 Sum_probs=17.0
Q ss_pred ccccccchhhcCCHHHHHHHHhhcc
Q psy8169 17 NHMCELCYKVFESRENLMRHLKIHD 41 (843)
Q Consensus 17 ~~~C~~C~~~f~~~~~l~~H~~~h~ 41 (843)
+|.|..|++.|.+..+|..|++.|.
T Consensus 1 ~~~C~~C~~~F~~~~~l~~H~~~h~ 25 (27)
T PF13912_consen 1 PFECDECGKTFSSLSALREHKRSHC 25 (27)
T ss_dssp SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred CCCCCccCCccCChhHHHHHhHHhc
Confidence 4667777777777777777776654
No 39
>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B.
Probab=97.27 E-value=7.3e-05 Score=43.17 Aligned_cols=25 Identities=24% Similarity=0.550 Sum_probs=23.6
Q ss_pred hhhchhhhhhhhhhhHHHHHhHhhc
Q psy8169 775 ILCKICNRTFTRNYNLKKHMKTVHK 799 (843)
Q Consensus 775 ~~C~~C~~~F~~~~~L~~H~~~~H~ 799 (843)
|.|..|++.|.+...|..|++.+++
T Consensus 2 ~~C~~C~~~F~~~~~l~~H~~~h~~ 26 (27)
T PF13912_consen 2 FECDECGKTFSSLSALREHKRSHCS 26 (27)
T ss_dssp EEETTTTEEESSHHHHHHHHCTTTT
T ss_pred CCCCccCCccCChhHHHHHhHHhcC
Confidence 8899999999999999999998875
No 40
>KOG2785|consensus
Probab=97.07 E-value=0.0012 Score=63.86 Aligned_cols=72 Identities=21% Similarity=0.308 Sum_probs=50.5
Q ss_pred CCCccccccccchhhhhhhhhccccCCCCCCccch-hhcccccccccccccccccchh---hhhhhHHHHhhhhhh
Q psy8169 663 IPCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVI-EVALGARANAAFIDRIRCELCD---KSFTRKDSLKKHNRI 734 (843)
Q Consensus 663 ~~C~~C~~~f~~~~~L~~H~~~~H~~~~p~~~~~~-~~~~~~~~~~~~~~~~~C~~C~---~~f~~~~~L~~H~~~ 734 (843)
-.|-+|++.|.+...-..||...|+---|-.-... ..++-..........|.|-+|+ +.|.+-.+.+.||+.
T Consensus 167 t~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~GLl~YLgeKV~~~~~CL~CN~~~~~f~sleavr~HM~~ 242 (390)
T KOG2785|consen 167 TDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEKGLLKYLGEKVGIGFICLFCNELGRPFSSLEAVRAHMRD 242 (390)
T ss_pred cceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchhHHHHHHHHHhccCceEEEeccccCcccccHHHHHHHhh
Confidence 67999999999999999999997764433111000 1122222223333458999999 999999999999965
No 41
>KOG2785|consensus
Probab=97.06 E-value=0.0014 Score=63.52 Aligned_cols=74 Identities=23% Similarity=0.383 Sum_probs=49.5
Q ss_pred ceecccccccccChHHHHHHHHhhccCCCCcccccccCCCCcchhhhHhhhccCCCCCCcccccccc---cccCChHHHH
Q psy8169 446 IIQCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQCRICS---KTFTRKDSLR 522 (843)
Q Consensus 446 ~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~C~---~~f~~~~~L~ 522 (843)
|-.|-+|+..+.+...-..||...|....|+-.-..... -.+.-+..... .-|.|-.|+ +.|.+..+.+
T Consensus 166 Pt~CLfC~~~~k~~e~~~~HM~~~HgffIPdreYL~D~~---GLl~YLgeKV~-----~~~~CL~CN~~~~~f~sleavr 237 (390)
T KOG2785|consen 166 PTDCLFCDKKSKSLEENLKHMFKEHGFFIPDREYLTDEK---GLLKYLGEKVG-----IGFICLFCNELGRPFSSLEAVR 237 (390)
T ss_pred CcceeecCCCcccHHHHHHHHhhccCCcCCchHhhhchh---HHHHHHHHHhc-----cCceEEEeccccCcccccHHHH
Confidence 367999999999999999999998876555321110000 01111111111 117899998 9999999999
Q ss_pred HHHhh
Q psy8169 523 KHMRR 527 (843)
Q Consensus 523 ~H~~~ 527 (843)
.||..
T Consensus 238 ~HM~~ 242 (390)
T KOG2785|consen 238 AHMRD 242 (390)
T ss_pred HHHhh
Confidence 99986
No 42
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=96.89 E-value=0.00037 Score=38.74 Aligned_cols=24 Identities=33% Similarity=0.627 Sum_probs=20.2
Q ss_pred hhhchhhhhhhhhhhHHHHHhHhhc
Q psy8169 775 ILCKICNRTFTRNYNLKKHMKTVHK 799 (843)
Q Consensus 775 ~~C~~C~~~F~~~~~L~~H~~~~H~ 799 (843)
|+|+.|++..+ ...|.+|++.+|+
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H~ 24 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHHP 24 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence 67999999998 9999999999985
No 43
>KOG2482|consensus
Probab=96.88 E-value=0.004 Score=58.86 Aligned_cols=77 Identities=21% Similarity=0.366 Sum_probs=47.9
Q ss_pred eecccccccccChHHHHHHHHhhccCCCCcccccccCCCCcchhhhHhhhccCCCCCCcccccccccccCChHHHHHHHh
Q psy8169 447 IQCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQCRICSKTFTRKDSLRKHMR 526 (843)
Q Consensus 447 ~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~ 526 (843)
..|-+|.....+...|..||+.+|..-- .+..+ ...-++...+....-.-.......|-.|.-.|.....|..||.
T Consensus 280 v~CLfC~~~~en~~~l~eHmk~vHe~Dl---~Ki~s-d~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm~ 355 (423)
T KOG2482|consen 280 VVCLFCTNFYENPVFLFEHMKIVHEFDL---LKIQS-DYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHMV 355 (423)
T ss_pred eEEEeeccchhhHHHHHHHHHHHHHhhH---Hhhcc-ccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhcc
Confidence 6899999999999999999999996411 11111 1011211111111000011122579999999999999999997
Q ss_pred h
Q psy8169 527 R 527 (843)
Q Consensus 527 ~ 527 (843)
.
T Consensus 356 e 356 (423)
T KOG2482|consen 356 E 356 (423)
T ss_pred c
Confidence 5
No 44
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=96.77 E-value=0.00042 Score=38.55 Aligned_cols=24 Identities=33% Similarity=0.620 Sum_probs=20.1
Q ss_pred ccccchhhhhhhHHHHhhhhhhhcC
Q psy8169 713 IRCELCDKSFTRKDSLKKHNRIFHG 737 (843)
Q Consensus 713 ~~C~~C~~~f~~~~~L~~H~~~~H~ 737 (843)
|+|+.|++... +..|.+|++.+|+
T Consensus 1 y~C~~C~y~t~-~~~l~~H~~~~H~ 24 (24)
T PF13909_consen 1 YKCPHCSYSTS-KSNLKRHLKRHHP 24 (24)
T ss_dssp EE-SSSS-EES-HHHHHHHHHHHHS
T ss_pred CCCCCCCCcCC-HHHHHHHHHhhCc
Confidence 68999999998 8999999999885
No 45
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=96.75 E-value=0.0015 Score=60.84 Aligned_cols=70 Identities=26% Similarity=0.481 Sum_probs=47.3
Q ss_pred CCCCCcc--ccccccchhhhhhhhhccccCCCCCCccchhhcccccccccccccccccchhhhhhhHHHHhhhhh
Q psy8169 661 DRIPCTL--CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDSLKKHNR 733 (843)
Q Consensus 661 ~~~~C~~--C~~~f~~~~~L~~H~~~~H~~~~p~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~ 733 (843)
++|+|++ |.++++++..|+.|+.--|...+.....-.+ ......+.-++|+|++|+|.+.....|+-|..
T Consensus 348 KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~p~---~~~~F~~~~KPYrCevC~KRYKNlNGLKYHr~ 419 (423)
T COG5189 348 KPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPE---KMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRK 419 (423)
T ss_pred ceecCCCCCchhhhccccchhhhhhccccCcccCCCCCcc---ccccccccCCceeccccchhhccCccceeccc
Confidence 5699988 9999999999999987333221111000000 01111233478999999999999999999964
No 46
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.64 E-value=0.0022 Score=60.47 Aligned_cols=140 Identities=29% Similarity=0.461 Sum_probs=75.0
Q ss_pred ccccc--ccccccCCHHHHHHhHHhhccCCCceeCCCCCC---cccchhhHHhhhcCCCCCCCCCChHHHhhhhhhhhcC
Q psy8169 47 RFKCE--QCDKRFSSNAELNKHSSAIHQRLKLHECDLCGK---NFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQR 121 (843)
Q Consensus 47 ~~~C~--~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~---~f~~~~~l~~H~~~~~~~~~~~~~~~l~~h~~~~h~~ 121 (843)
.|.|+ .|.........|..|....|. .+.|.+|-. .|.....| .++..|..|. ..-..
T Consensus 151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~---~~~C~~C~~nKk~F~~E~~l-------------F~~~~Lr~H~-~~G~~ 213 (493)
T COG5236 151 SFKCPKSKCHRRCGSLKELKKHYKAQHG---FVLCSECIGNKKDFWNEIRL-------------FRSSTLRDHK-NGGLE 213 (493)
T ss_pred HhcCCchhhhhhhhhHHHHHHHHHhhcC---cEEhHhhhcCcccCccceee-------------eecccccccc-cCCcc
Confidence 47887 488888888899999866554 467877732 34332211 1122222222 11111
Q ss_pred CCc----ccCCcchhccCChhHHHHhHhhhcCCCCcccccccccccccCHHHHHHHHhhcCCCcccccchhHhhcCHHHH
Q psy8169 122 LKL----HECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHNGPKYTCEICAKEFTRVYEL 197 (843)
Q Consensus 122 ~~~----~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~L 197 (843)
+.. -.|..|...|-+-..|..|++..| -.|.+|++.-. .=...|.+...|
T Consensus 214 e~GFKGHP~C~FC~~~FYdDDEL~~HcR~~H------E~ChICD~v~p--------------------~~~QYFK~Y~~L 267 (493)
T COG5236 214 EEGFKGHPLCIFCKIYFYDDDELRRHCRLRH------EACHICDMVGP--------------------IRYQYFKSYEDL 267 (493)
T ss_pred ccCcCCCchhhhccceecChHHHHHHHHhhh------hhhhhhhccCc--------------------cchhhhhCHHHH
Confidence 111 247777777777777777777555 24666654311 011234455555
Q ss_pred HHHHhhccCccccCccccCc--cc----ccccchhhHHHhhhhcC
Q psy8169 198 NIHKKLHEDESVANQLKCEF--CG----KVFLKKSNLKAHIENNH 236 (843)
Q Consensus 198 ~~H~~~h~~~~~~~~~~C~~--C~----~~f~~~~~l~~H~~~~H 236 (843)
..|.+.-+ |.|.+ |. ++|.....|..|+-..|
T Consensus 268 e~HF~~~h-------y~ct~qtc~~~k~~vf~~~~el~~h~~~~h 305 (493)
T COG5236 268 EAHFRNAH-------YCCTFQTCRVGKCYVFPYHTELLEHLTRFH 305 (493)
T ss_pred HHHhhcCc-------eEEEEEEEecCcEEEeccHHHHHHHHHHHh
Confidence 55554322 33332 21 46777777777776666
No 47
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=96.59 E-value=0.0011 Score=42.78 Aligned_cols=28 Identities=25% Similarity=0.573 Sum_probs=22.1
Q ss_pred ccccchhhhhhhHHHHhhhhhhhcCCCCC
Q psy8169 713 IRCELCDKSFTRKDSLKKHNRIFHGGADP 741 (843)
Q Consensus 713 ~~C~~C~~~f~~~~~L~~H~~~~H~~~~~ 741 (843)
-.|++|+..+....+|++|+...|+ .+|
T Consensus 25 atCP~C~a~~~~srnLrRHle~~H~-~k~ 52 (54)
T PF09237_consen 25 ATCPICGAVIRQSRNLRRHLEIRHF-KKP 52 (54)
T ss_dssp EE-TTT--EESSHHHHHHHHHHHTT-TS-
T ss_pred CCCCcchhhccchhhHHHHHHHHhc-ccC
Confidence 7899999999999999999999998 444
No 48
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=96.53 E-value=0.00097 Score=43.11 Aligned_cols=27 Identities=26% Similarity=0.583 Sum_probs=22.1
Q ss_pred hhhchhhhhhhhhhhHHHHHhHhhccC
Q psy8169 775 ILCKICNRTFTRNYNLKKHMKTVHKID 801 (843)
Q Consensus 775 ~~C~~C~~~F~~~~~L~~H~~~~H~~~ 801 (843)
-.|++|+..++...+|++||...|+..
T Consensus 25 atCP~C~a~~~~srnLrRHle~~H~~k 51 (54)
T PF09237_consen 25 ATCPICGAVIRQSRNLRRHLEIRHFKK 51 (54)
T ss_dssp EE-TTT--EESSHHHHHHHHHHHTTTS
T ss_pred CCCCcchhhccchhhHHHHHHHHhccc
Confidence 669999999999999999999999864
No 49
>KOG4173|consensus
Probab=96.52 E-value=0.0019 Score=55.95 Aligned_cols=93 Identities=24% Similarity=0.534 Sum_probs=72.2
Q ss_pred CCCCCcc--ccccccchhhhhhhhhccccCCCCCCccchhhcccccccccccccccccchhhhhhhHHHHhhhhhhhcCC
Q psy8169 661 DRIPCTL--CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDSLKKHNRIFHGG 738 (843)
Q Consensus 661 ~~~~C~~--C~~~f~~~~~L~~H~~~~H~~~~p~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~ 738 (843)
..|.|++ |...|.+......|+.+-|+ -.|.+|.+.|.+...|..|+..-|..
T Consensus 78 ~~~~cqvagc~~~~d~lD~~E~hY~~~h~-------------------------~sCs~C~r~~Pt~hLLd~HI~E~HDs 132 (253)
T KOG4173|consen 78 PAFACQVAGCCQVFDALDDYEHHYHTLHG-------------------------NSCSFCKRAFPTGHLLDAHILEWHDS 132 (253)
T ss_pred ccccccccchHHHHhhhhhHHHhhhhccc-------------------------chhHHHHHhCCchhhhhHHHHHHHHH
Confidence 3488988 99999999999999987676 46999999999999999999877741
Q ss_pred CCCCcchhhhhcCCcceeeeeecCCCCCCCCccccchhhch--hhhhhhhhhhHHHHHhHhhccCC
Q psy8169 739 ADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKI--CNRTFTRNYNLKKHMKTVHKIDD 802 (843)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~--C~~~F~~~~~L~~H~~~~H~~~~ 802 (843)
-.... ..++ -..|+|-+ |+..|.+...-+.||-..|....
T Consensus 133 -~Fqa~---veRG--------------------~dMy~ClvEgCt~KFkT~r~RkdH~I~~Hk~Pa 174 (253)
T KOG4173|consen 133 -LFQAL---VERG--------------------QDMYQCLVEGCTEKFKTSRDRKDHMIRMHKYPA 174 (253)
T ss_pred -HHHHH---HHcC--------------------ccHHHHHHHhhhhhhhhhhhhhhHHHHhccCCc
Confidence 00000 0000 11399977 99999999999999999998643
No 50
>smart00355 ZnF_C2H2 zinc finger.
Probab=96.52 E-value=0.0021 Score=36.60 Aligned_cols=24 Identities=38% Similarity=0.719 Sum_probs=16.1
Q ss_pred cccccchhhcCCHHHHHHHHhhcc
Q psy8169 18 HMCELCYKVFESRENLMRHLKIHD 41 (843)
Q Consensus 18 ~~C~~C~~~f~~~~~l~~H~~~h~ 41 (843)
|.|+.|++.|.+...|..|++.|.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~H~ 24 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRTHX 24 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHHhc
Confidence 456777777777777777776553
No 51
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=96.37 E-value=0.0019 Score=36.30 Aligned_cols=22 Identities=36% Similarity=0.837 Sum_probs=14.3
Q ss_pred cccccchhhcCCHHHHHHHHhh
Q psy8169 18 HMCELCYKVFESRENLMRHLKI 39 (843)
Q Consensus 18 ~~C~~C~~~f~~~~~l~~H~~~ 39 (843)
|.|.+|+++|.+...|..|++.
T Consensus 1 ~~C~~C~~~f~s~~~~~~H~~s 22 (25)
T PF12874_consen 1 FYCDICNKSFSSENSLRQHLRS 22 (25)
T ss_dssp EEETTTTEEESSHHHHHHHHTT
T ss_pred CCCCCCCCCcCCHHHHHHHHCc
Confidence 4566666666666666666654
No 52
>KOG2482|consensus
Probab=96.33 E-value=0.0039 Score=58.91 Aligned_cols=194 Identities=21% Similarity=0.318 Sum_probs=100.6
Q ss_pred cccccccccc-CChHHHHHHHhhhccccCcchhhhhhhhhhhhhhhHHHHhhcccCCCCCcccccccccccchHHHHHHH
Q psy8169 506 IQCRICSKTF-TRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIPCELCYKTFTRKDSLRKHM 584 (843)
Q Consensus 506 ~~C~~C~~~f-~~~~~L~~H~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~ 584 (843)
.+|-.|...+ ..++.+..|+-..|..+-......+-.. ..+..+.. . ...+.|-+|.+.|..+..|+.||
T Consensus 145 lqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvn----elLehLke-k----L~r~~CLyCekifrdkntLkeHM 215 (423)
T KOG2482|consen 145 LQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVN----ELLEHLKE-K----LERLRCLYCEKIFRDKNTLKEHM 215 (423)
T ss_pred eEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHH----HHHHHHHH-H----HhhheeeeeccccCCcHHHHHHH
Confidence 6899998855 4688888999888875533222211111 11111111 1 23789999999999999999999
Q ss_pred HHh-hccCCCCCCCCCCCCCCC---------cchhhhccCCcccccCccccCcccccCCCcccccCCcCCCccccCCCCC
Q psy8169 585 KIF-HTRRNPSANSGNSGTSAP---------PAVKLEQNGGEKVENSTSVENSTSVENSTSVENSANVENTSSVDNRTSV 654 (843)
Q Consensus 585 ~~~-H~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 654 (843)
+.. |..-+|.. ........- .....+.. .+..+.....+ . ..+.-..
T Consensus 216 rkK~HrrinPkn-reYDkfyiINY~ev~ks~t~~~~e~d-ret~~d~~E~D----~-------------~wsDw~e---- 272 (423)
T KOG2482|consen 216 RKKRHRRINPKN-REYDKFYIINYLEVGKSWTIVHSEDD-RETNEDINETD----D-------------TWSDWNE---- 272 (423)
T ss_pred HhccCcccCCCc-cccceEEEEeHhhcCCccchhhhhhh-hhhhccccccc----c-------------chhhhhc----
Confidence 863 33333321 111111000 00000000 00000000000 0 0000000
Q ss_pred CCCCCCCCCCCccccccccchhhhhhhhhccccCCCCCCccchhhcccccccccc-------cccccccchhhhhhhHHH
Q psy8169 655 GPVAPIDRIPCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAF-------IDRIRCELCDKSFTRKDS 727 (843)
Q Consensus 655 ~p~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~p~~~~~~~~~~~~~~~~~~-------~~~~~C~~C~~~f~~~~~ 727 (843)
-.++.....|-+|.....+...|..||..+|..+-.--. .+..+........ ...-.|-.|.-.|.....
T Consensus 273 -d~a~a~~v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~--sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~ 349 (423)
T KOG2482|consen 273 -DDAEALSVVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQ--SDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPG 349 (423)
T ss_pred -CCCCccceEEEeeccchhhHHHHHHHHHHHHHhhHHhhc--cccccchhhhhhHHHHHHHHhhccccccccccccCcch
Confidence 001111158999999999999999999999964321000 0000110110000 112468999999999999
Q ss_pred Hhhhhhh
Q psy8169 728 LKKHNRI 734 (843)
Q Consensus 728 L~~H~~~ 734 (843)
|..||.-
T Consensus 350 l~~hm~e 356 (423)
T KOG2482|consen 350 LLIHMVE 356 (423)
T ss_pred hhhhccc
Confidence 9999864
No 53
>smart00355 ZnF_C2H2 zinc finger.
Probab=96.29 E-value=0.002 Score=36.68 Aligned_cols=22 Identities=36% Similarity=0.747 Sum_probs=20.3
Q ss_pred hhhchhhhhhhhhhhHHHHHhH
Q psy8169 775 ILCKICNRTFTRNYNLKKHMKT 796 (843)
Q Consensus 775 ~~C~~C~~~F~~~~~L~~H~~~ 796 (843)
|.|..|++.|.....|..|++.
T Consensus 1 ~~C~~C~~~f~~~~~l~~H~~~ 22 (26)
T smart00355 1 YRCPECGKVFKSKSALKEHMRT 22 (26)
T ss_pred CCCCCCcchhCCHHHHHHHHHH
Confidence 5699999999999999999983
No 54
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.23 E-value=0.0047 Score=58.34 Aligned_cols=141 Identities=24% Similarity=0.415 Sum_probs=75.0
Q ss_pred cccCCc--chhccCChhHHHHhHhhhcCCCCccccccccc---ccccCHHHHHHHHhhcCCCcccccchhHhhcCHHHHH
Q psy8169 124 LHECDL--CGKNFSQRNNLKRHLEEVHRTDGMKFECYVCS---KVLATSHSLKRHLLIHNGPKYTCEICAKEFTRVYELN 198 (843)
Q Consensus 124 ~~~C~~--C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~C~---~~f~~~~~l~~H~~~h~~~~~~C~~C~~~f~~~~~L~ 198 (843)
.|.|+. |...+.....|+.|.+..|+ .+.|.+|- +.|... ...-++..|+
T Consensus 151 ~F~CP~skc~~~C~~~k~lk~H~K~~H~----~~~C~~C~~nKk~F~~E---------------------~~lF~~~~Lr 205 (493)
T COG5236 151 SFKCPKSKCHRRCGSLKELKKHYKAQHG----FVLCSECIGNKKDFWNE---------------------IRLFRSSTLR 205 (493)
T ss_pred HhcCCchhhhhhhhhHHHHHHHHHhhcC----cEEhHhhhcCcccCccc---------------------eeeeeccccc
Confidence 467764 77777777788888876552 46677764 233211 1112233344
Q ss_pred HHHhhccCccccC-ccccCcccccccchhhHHHhhhhcCCCccCCccccCCc--ccccCCHHHHHHHHhhhcCCCCCcce
Q psy8169 199 IHKKLHEDESVAN-QLKCEFCGKVFLKKSNLKAHIENNHLDYSCLECKAVGE--EISFDTKKNLLLHLKTKHKNVISNVY 275 (843)
Q Consensus 199 ~H~~~h~~~~~~~-~~~C~~C~~~f~~~~~l~~H~~~~H~~~~C~~C~~~~~--~~~~~~~~~l~~H~~~~~~~~~~~~~ 275 (843)
.|...-..+..-+ -=.|.+|...|..-..|..|++..| -.|.+|+.++. ...|.+...|..|.+..|
T Consensus 206 ~H~~~G~~e~GFKGHP~C~FC~~~FYdDDEL~~HcR~~H--E~ChICD~v~p~~~QYFK~Y~~Le~HF~~~h-------- 275 (493)
T COG5236 206 DHKNGGLEEEGFKGHPLCIFCKIYFYDDDELRRHCRLRH--EACHICDMVGPIRYQYFKSYEDLEAHFRNAH-------- 275 (493)
T ss_pred ccccCCccccCcCCCchhhhccceecChHHHHHHHHhhh--hhhhhhhccCccchhhhhCHHHHHHHhhcCc--------
Confidence 4433222210000 1135555555555555666655555 23444444432 234666677777766554
Q ss_pred eecCc--Ch----hccCChHHHHHHHHHhc
Q psy8169 276 LTCLI--CF----KTFLTEVDLGKHMKMHM 299 (843)
Q Consensus 276 ~~C~~--C~----~~f~~~~~L~~H~~~H~ 299 (843)
|.|.+ |. ..|.....|+.|+..-+
T Consensus 276 y~ct~qtc~~~k~~vf~~~~el~~h~~~~h 305 (493)
T COG5236 276 YCCTFQTCRVGKCYVFPYHTELLEHLTRFH 305 (493)
T ss_pred eEEEEEEEecCcEEEeccHHHHHHHHHHHh
Confidence 55543 31 46888888888886543
No 55
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=95.82 E-value=0.0053 Score=34.49 Aligned_cols=20 Identities=35% Similarity=0.798 Sum_probs=10.2
Q ss_pred ccccccccccCHHHHHHHHh
Q psy8169 156 ECYVCSKVLATSHSLKRHLL 175 (843)
Q Consensus 156 ~C~~C~~~f~~~~~l~~H~~ 175 (843)
.|.+|++.|.+...|..|++
T Consensus 2 ~C~~C~~~f~s~~~~~~H~~ 21 (25)
T PF12874_consen 2 YCDICNKSFSSENSLRQHLR 21 (25)
T ss_dssp EETTTTEEESSHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHC
Confidence 45555555555555555544
No 56
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=95.43 E-value=0.0049 Score=35.34 Aligned_cols=22 Identities=36% Similarity=0.745 Sum_probs=14.7
Q ss_pred cccccchhhcCCHHHHHHHHhh
Q psy8169 18 HMCELCYKVFESRENLMRHLKI 39 (843)
Q Consensus 18 ~~C~~C~~~f~~~~~l~~H~~~ 39 (843)
|.|..|++.|.+...|..|+++
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 5577777777777777666653
No 57
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=95.26 E-value=0.01 Score=34.00 Aligned_cols=22 Identities=36% Similarity=0.843 Sum_probs=20.8
Q ss_pred CCCccccccccchhhhhhhhhc
Q psy8169 663 IPCTLCDKTFTRKDSLKKHIRI 684 (843)
Q Consensus 663 ~~C~~C~~~f~~~~~L~~H~~~ 684 (843)
|.|..|++.|.+...|..|++.
T Consensus 2 ~~C~~C~k~f~~~~~~~~H~~s 23 (27)
T PF12171_consen 2 FYCDACDKYFSSENQLKQHMKS 23 (27)
T ss_dssp CBBTTTTBBBSSHHHHHCCTTS
T ss_pred CCcccCCCCcCCHHHHHHHHcc
Confidence 7899999999999999999975
No 58
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=94.39 E-value=0.19 Score=54.79 Aligned_cols=57 Identities=30% Similarity=0.595 Sum_probs=50.1
Q ss_pred ceeecCcChhccCChHHHHHHHHHhcCCCceeccc--cchhcCChhhHHHHHHHccCCC
Q psy8169 274 VYLTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRF--CNKYFSRNYNLKQHMKTCTKNV 330 (843)
Q Consensus 274 ~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~--C~~~f~~~~~L~~H~~~h~~~~ 330 (843)
..+.|+.|...|.....+..|.+.|.+++++.|.. |...+.....+..|...++...
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (467)
T COG5048 32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNNP 90 (467)
T ss_pred chhhcccccccccccchhhhhcccccccCCccccccccccccCCcchhhhhcccccccc
Confidence 35789999999999999999999999999999988 7788888888999988876543
No 59
>PRK04860 hypothetical protein; Provisional
Probab=94.15 E-value=0.028 Score=49.05 Aligned_cols=38 Identities=16% Similarity=0.456 Sum_probs=34.0
Q ss_pred eeecCcChhccCChHHHHHHHHHhcCCCceeccccchhcCCh
Q psy8169 275 YLTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRN 316 (843)
Q Consensus 275 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~ 316 (843)
+|.|. |+. ....+..|.++|.++++|.|..|+..|...
T Consensus 119 ~Y~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~~ 156 (160)
T PRK04860 119 PYRCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVFK 156 (160)
T ss_pred EEEcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEEe
Confidence 69998 987 778899999999999999999999988654
No 60
>KOG4173|consensus
Probab=94.03 E-value=0.035 Score=48.45 Aligned_cols=92 Identities=25% Similarity=0.516 Sum_probs=72.2
Q ss_pred CCceeccc--ccccccChHHHHHHHHhhccCCCCcccccccCCCCcchhhhHhhhccCCCCCCcccccccccccCChHHH
Q psy8169 444 NKIIQCHI--CLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQCRICSKTFTRKDSL 521 (843)
Q Consensus 444 ~~~~~C~~--C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L 521 (843)
...|.|++ |...|.+......|+...|. -.|..|.+.|++.--|
T Consensus 77 ~~~~~cqvagc~~~~d~lD~~E~hY~~~h~----------------------------------~sCs~C~r~~Pt~hLL 122 (253)
T KOG4173|consen 77 VPAFACQVAGCCQVFDALDDYEHHYHTLHG----------------------------------NSCSFCKRAFPTGHLL 122 (253)
T ss_pred cccccccccchHHHHhhhhhHHHhhhhccc----------------------------------chhHHHHHhCCchhhh
Confidence 34588987 99999999999999877675 3699999999999999
Q ss_pred HHHHhhhccccCcchhhhhhhhhhhhhhhHHHHhhcccCCCCCccc--ccccccccchHHHHHHHHHhhcc
Q psy8169 522 RKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIPC--ELCYKTFTRKDSLRKHMKIFHTR 590 (843)
Q Consensus 522 ~~H~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C--~~C~~~f~~~~~L~~H~~~~H~~ 590 (843)
..|+...|-. +--+..+.| ..-|.| .-|+-.|.+...-+.|+...|.-
T Consensus 123 d~HI~E~HDs------------------~Fqa~veRG---~dMy~ClvEgCt~KFkT~r~RkdH~I~~Hk~ 172 (253)
T KOG4173|consen 123 DAHILEWHDS------------------LFQALVERG---QDMYQCLVEGCTEKFKTSRDRKDHMIRMHKY 172 (253)
T ss_pred hHHHHHHHHH------------------HHHHHHHcC---ccHHHHHHHhhhhhhhhhhhhhhHHHHhccC
Confidence 9999887731 001111222 456889 66999999999999999888874
No 61
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=93.90 E-value=0.051 Score=44.61 Aligned_cols=86 Identities=14% Similarity=0.240 Sum_probs=50.9
Q ss_pred ccccchhhhhhhHHHHhhhhhhhcCCCCCCc---chhhhhcCC--cceeeeeecCCCCCCCC---ccccchhh----chh
Q psy8169 713 IRCELCDKSFTRKDSLKKHNRIFHGGADPKV---MDEQMARGS--ADFLEVVLNEDGEGEPV---SITNEILC----KIC 780 (843)
Q Consensus 713 ~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~C----~~C 780 (843)
..|..|+.+... +.+..|++..|....... +........ ...............++ ....+|.| ..|
T Consensus 12 lIC~~C~~av~~-~~v~~HL~~~H~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~p~~~~~Pi~gLp~~~G~~C~~~~~~C 90 (109)
T PF12013_consen 12 LICRQCQYAVQP-SEVESHLRKRHHILKSQERQRIVEAIRQWPDLLPDPDDLQIPPDPSPPIPGLPVYDGYRCQCDPPHC 90 (109)
T ss_pred EEeCCCCcccCc-hHHHHHHHHhcccccHHHHHHHHHHHHhhhhcccCccccCCCCCCCCcCCCCCCCCCeeeecCCCCC
Confidence 679999999876 899999996665332211 111111100 00000111111111111 12256999 999
Q ss_pred hhhhhhhhhHHHHHhHhhc
Q psy8169 781 NRTFTRNYNLKKHMKTVHK 799 (843)
Q Consensus 781 ~~~F~~~~~L~~H~~~~H~ 799 (843)
++.+++...+..|++.+|+
T Consensus 91 ~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 91 GYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred CcEeccHHHHHHHHHHhcC
Confidence 9999999999999999996
No 62
>PRK04860 hypothetical protein; Provisional
Probab=93.65 E-value=0.036 Score=48.44 Aligned_cols=39 Identities=15% Similarity=0.586 Sum_probs=32.9
Q ss_pred CcccccccccccCCHHHHHHhHHhhccCCCceeCCCCCCcccch
Q psy8169 46 KRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQR 89 (843)
Q Consensus 46 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~ 89 (843)
-+|.|. |+. ....+.+|. ++|.+.++|.|..|+..|...
T Consensus 118 ~~Y~C~-C~~---~~~~~rrH~-ri~~g~~~YrC~~C~~~l~~~ 156 (160)
T PRK04860 118 FPYRCK-CQE---HQLTVRRHN-RVVRGEAVYRCRRCGETLVFK 156 (160)
T ss_pred EEEEcC-CCC---eeCHHHHHH-HHhcCCccEECCCCCceeEEe
Confidence 468998 987 667889997 789999999999999988654
No 63
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=93.39 E-value=0.048 Score=30.40 Aligned_cols=21 Identities=43% Similarity=1.096 Sum_probs=18.4
Q ss_pred CCCccccccccchhhhhhhhhc
Q psy8169 663 IPCTLCDKTFTRKDSLKKHIRI 684 (843)
Q Consensus 663 ~~C~~C~~~f~~~~~L~~H~~~ 684 (843)
.+|+.||..| ....|..|+..
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~~ 23 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEKI 23 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHHh
Confidence 6799999999 88889999764
No 64
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=93.34 E-value=0.046 Score=36.04 Aligned_cols=32 Identities=19% Similarity=0.336 Sum_probs=29.2
Q ss_pred hhhchhhhhhhhhhhHHHHHhHhhccCCCCce
Q psy8169 775 ILCKICNRTFTRNYNLKKHMKTVHKIDDNEPY 806 (843)
Q Consensus 775 ~~C~~C~~~F~~~~~L~~H~~~~H~~~~~~~~ 806 (843)
+.|+.||..|.....+.+|...-|+...+.|.
T Consensus 18 lrCPRC~~~FR~~K~Y~RHVNKaH~~~~~r~k 49 (65)
T COG4049 18 LRCPRCGMVFRRRKDYIRHVNKAHGWLFGRGK 49 (65)
T ss_pred eeCCchhHHHHHhHHHHHHhhHHhhhhhcCCc
Confidence 88999999999999999999999998776664
No 65
>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.
Probab=93.17 E-value=0.16 Score=41.64 Aligned_cols=84 Identities=20% Similarity=0.371 Sum_probs=50.1
Q ss_pred cccccccccccCChHHHHHHHhhhccccCcchhhhhhhhh-----hhhhhhHHHHh------hcccCCCCCccc----cc
Q psy8169 505 IIQCRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQ-----INRNMLDVILK------ESGHEIKSRIPC----EL 569 (843)
Q Consensus 505 ~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~-----~~~~~~~~~~~------~~~~~~~~~~~C----~~ 569 (843)
...|..|+..... +.+..|++..|..........+.... +.....+.... ..+-.....|.| ..
T Consensus 11 vlIC~~C~~av~~-~~v~~HL~~~H~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~p~~~~~Pi~gLp~~~G~~C~~~~~~ 89 (109)
T PF12013_consen 11 VLICRQCQYAVQP-SEVESHLRKRHHILKSQERQRIVEAIRQWPDLLPDPDDLQIPPDPSPPIPGLPVYDGYRCQCDPPH 89 (109)
T ss_pred EEEeCCCCcccCc-hHHHHHHHHhcccccHHHHHHHHHHHHhhhhcccCccccCCCCCCCCcCCCCCCCCCeeeecCCCC
Confidence 3789999998776 88999999666543222111111110 00000000000 001111245899 99
Q ss_pred ccccccchHHHHHHHHHhhc
Q psy8169 570 CYKTFTRKDSLRKHMKIFHT 589 (843)
Q Consensus 570 C~~~f~~~~~L~~H~~~~H~ 589 (843)
|++.+.+...|+.|++.+|+
T Consensus 90 C~y~~~~~~~m~~H~~~~Hg 109 (109)
T PF12013_consen 90 CGYITRSKKTMRKHWRKEHG 109 (109)
T ss_pred CCcEeccHHHHHHHHHHhcC
Confidence 99999999999999998774
No 66
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=92.57 E-value=0.11 Score=28.94 Aligned_cols=21 Identities=33% Similarity=0.683 Sum_probs=13.7
Q ss_pred cccccchhhcCCHHHHHHHHhh
Q psy8169 18 HMCELCYKVFESRENLMRHLKI 39 (843)
Q Consensus 18 ~~C~~C~~~f~~~~~l~~H~~~ 39 (843)
..|++|++.| ...+|.+|+.+
T Consensus 3 ~~C~~CgR~F-~~~~l~~H~~~ 23 (25)
T PF13913_consen 3 VPCPICGRKF-NPDRLEKHEKI 23 (25)
T ss_pred CcCCCCCCEE-CHHHHHHHHHh
Confidence 4577777777 56666677653
No 67
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=92.07 E-value=0.068 Score=32.98 Aligned_cols=23 Identities=39% Similarity=0.817 Sum_probs=21.0
Q ss_pred hhhchhhhhhhhhhhHHHHHhHh
Q psy8169 775 ILCKICNRTFTRNYNLKKHMKTV 797 (843)
Q Consensus 775 ~~C~~C~~~F~~~~~L~~H~~~~ 797 (843)
|.|++|+..|.....+..|++..
T Consensus 4 ~~C~~C~~~~~~~~~~~~H~~gk 26 (35)
T smart00451 4 FYCKLCNVTFTDEISVEAHLKGK 26 (35)
T ss_pred eEccccCCccCCHHHHHHHHChH
Confidence 88999999999999999998754
No 68
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=91.97 E-value=0.12 Score=31.79 Aligned_cols=22 Identities=32% Similarity=0.661 Sum_probs=12.7
Q ss_pred ccccccchhhcCCHHHHHHHHh
Q psy8169 17 NHMCELCYKVFESRENLMRHLK 38 (843)
Q Consensus 17 ~~~C~~C~~~f~~~~~l~~H~~ 38 (843)
+|.|.+|++.|.+..++..|++
T Consensus 3 ~~~C~~C~~~~~~~~~~~~H~~ 24 (35)
T smart00451 3 GFYCKLCNVTFTDEISVEAHLK 24 (35)
T ss_pred CeEccccCCccCCHHHHHHHHC
Confidence 4556666666665655555553
No 69
>COG5048 FOG: Zn-finger [General function prediction only]
Probab=91.56 E-value=0.036 Score=60.58 Aligned_cols=47 Identities=30% Similarity=0.564 Sum_probs=24.9
Q ss_pred ccccccCHHHHHHHHhhcCCCc---ccccchhHhhcCHHHHHHHHhhccC
Q psy8169 160 CSKVLATSHSLKRHLLIHNGPK---YTCEICAKEFTRVYELNIHKKLHED 206 (843)
Q Consensus 160 C~~~f~~~~~l~~H~~~h~~~~---~~C~~C~~~f~~~~~L~~H~~~h~~ 206 (843)
|...+.....+..|...|.... +.+..|...+.....|..|++.|..
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (467)
T COG5048 394 CIRNFKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTN 443 (467)
T ss_pred hhhhhccccccccccccccccCCcCCCCCcchhhccCccccccccccccc
Confidence 4445555555555554444322 5555566666666666666655544
No 70
>KOG2893|consensus
Probab=91.41 E-value=0.051 Score=48.60 Aligned_cols=48 Identities=25% Similarity=0.538 Sum_probs=43.2
Q ss_pred CCccccccccchhhhhhhhhccccCCCCCCccchhhcccccccccccccccccchhhhhhhHHHHhhhhhhhcC
Q psy8169 664 PCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDSLKKHNRIFHG 737 (843)
Q Consensus 664 ~C~~C~~~f~~~~~L~~H~~~~H~~~~p~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~ 737 (843)
.|=+|++.|....-|.+|++..| |+|.+|.+...+--.|..|....|.
T Consensus 12 wcwycnrefddekiliqhqkakh--------------------------fkchichkkl~sgpglsihcmqvhk 59 (341)
T KOG2893|consen 12 WCWYCNREFDDEKILIQHQKAKH--------------------------FKCHICHKKLFSGPGLSIHCMQVHK 59 (341)
T ss_pred eeeecccccchhhhhhhhhhhcc--------------------------ceeeeehhhhccCCCceeehhhhhh
Confidence 49999999999999999999866 9999999998888889999777775
No 71
>KOG2893|consensus
Probab=91.39 E-value=0.056 Score=48.36 Aligned_cols=48 Identities=29% Similarity=0.569 Sum_probs=43.7
Q ss_pred ecccccccccChHHHHHHHHhhccCCCCcccccccCCCCcchhhhHhhhccCCCCCCcccccccccccCChHHHHHHHhh
Q psy8169 448 QCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQCRICSKTFTRKDSLRKHMRR 527 (843)
Q Consensus 448 ~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~ 527 (843)
.|=+|++.|....-|.+|.+..| |+|.+|.+...+--.|..|.-.
T Consensus 12 wcwycnrefddekiliqhqkakh-----------------------------------fkchichkkl~sgpglsihcmq 56 (341)
T KOG2893|consen 12 WCWYCNREFDDEKILIQHQKAKH-----------------------------------FKCHICHKKLFSGPGLSIHCMQ 56 (341)
T ss_pred eeeecccccchhhhhhhhhhhcc-----------------------------------ceeeeehhhhccCCCceeehhh
Confidence 49999999999999999998866 9999999999999999999887
Q ss_pred hcc
Q psy8169 528 FHI 530 (843)
Q Consensus 528 ~H~ 530 (843)
+|.
T Consensus 57 vhk 59 (341)
T KOG2893|consen 57 VHK 59 (341)
T ss_pred hhh
Confidence 785
No 72
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=88.49 E-value=0.2 Score=33.21 Aligned_cols=27 Identities=30% Similarity=0.540 Sum_probs=17.2
Q ss_pred cCCCCccccccchhhcCCHHHHHHHHh
Q psy8169 12 HEYVENHMCELCYKVFESRENLMRHLK 38 (843)
Q Consensus 12 h~~~~~~~C~~C~~~f~~~~~l~~H~~ 38 (843)
-.|+..++||-|+..|.....+.+|..
T Consensus 12 RDGE~~lrCPRC~~~FR~~K~Y~RHVN 38 (65)
T COG4049 12 RDGEEFLRCPRCGMVFRRRKDYIRHVN 38 (65)
T ss_pred cCCceeeeCCchhHHHHHhHHHHHHhh
Confidence 345666666666666666666666664
No 73
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=86.76 E-value=1.1 Score=36.08 Aligned_cols=21 Identities=14% Similarity=0.365 Sum_probs=12.7
Q ss_pred CcccccccccccCCHHHHHHh
Q psy8169 46 KRFKCEQCDKRFSSNAELNKH 66 (843)
Q Consensus 46 ~~~~C~~C~~~f~~~~~l~~H 66 (843)
-|..|+.|+-+.-+...|.+-
T Consensus 14 LP~~CpiCgLtLVss~HLARS 34 (112)
T TIGR00622 14 LPVECPICGLTLILSTHLARS 34 (112)
T ss_pred CCCcCCcCCCEEeccchHHHh
Confidence 456666666666655555553
No 74
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=83.32 E-value=0.66 Score=28.05 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=14.8
Q ss_pred eecCcChhccCChHHHHHHHHHhcCCCceeccccch
Q psy8169 276 LTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNK 311 (843)
Q Consensus 276 ~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~ 311 (843)
|.|.+||..+.... .++.|+.|+.
T Consensus 2 ~~C~~CGy~y~~~~------------~~~~CP~Cg~ 25 (33)
T cd00350 2 YVCPVCGYIYDGEE------------APWVCPVCGA 25 (33)
T ss_pred EECCCCCCEECCCc------------CCCcCcCCCC
Confidence 56777776654322 5667777764
No 75
>PHA00626 hypothetical protein
Probab=83.21 E-value=0.38 Score=32.19 Aligned_cols=13 Identities=15% Similarity=0.319 Sum_probs=11.6
Q ss_pred ccccchhhhhhhH
Q psy8169 713 IRCELCDKSFTRK 725 (843)
Q Consensus 713 ~~C~~C~~~f~~~ 725 (843)
|+|+.||+.|+.-
T Consensus 24 YkCkdCGY~ft~~ 36 (59)
T PHA00626 24 YVCCDCGYNDSKD 36 (59)
T ss_pred eEcCCCCCeechh
Confidence 9999999999864
No 76
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=82.56 E-value=0.58 Score=30.86 Aligned_cols=24 Identities=38% Similarity=0.751 Sum_probs=18.0
Q ss_pred hhhchhhhhhhhh----hhHHHHHhHhh
Q psy8169 775 ILCKICNRTFTRN----YNLKKHMKTVH 798 (843)
Q Consensus 775 ~~C~~C~~~F~~~----~~L~~H~~~~H 798 (843)
.+|.+|++.+... ++|.+|++..|
T Consensus 17 a~C~~C~~~~~~~~~~ts~l~~HL~~~h 44 (45)
T PF02892_consen 17 AKCKYCGKVIKYSSGGTSNLKRHLKKKH 44 (45)
T ss_dssp EEETTTTEE-----SSTHHHHHHHHHTT
T ss_pred EEeCCCCeEEeeCCCcHHHHHHhhhhhC
Confidence 6799999999874 89999998776
No 77
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=79.53 E-value=0.7 Score=43.31 Aligned_cols=56 Identities=21% Similarity=0.406 Sum_probs=33.9
Q ss_pred CCCccccccccchhhhhhhhhccccCCCCCCccchhhcccccccccccccccccchhhhhhhH
Q psy8169 663 IPCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRK 725 (843)
Q Consensus 663 ~~C~~C~~~f~~~~~L~~H~~~~H~~~~p~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~ 725 (843)
+.||+|+..|.+..-+...++......-+. .. + ...++-......|+.||++|...
T Consensus 6 ~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~-----~~-Y-~~vnP~~Y~V~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 6 ITCPVCGKEFKTKKVRSGKIRVIRRDSDFC-----PR-Y-KGVNPLFYEVWVCPHCGYAAFEE 61 (214)
T ss_pred eECCCCCCeeeeeEEEcCCceEeeecCCCc-----cc-c-CCCCCeeeeEEECCCCCCccccc
Confidence 789999999999887777776533221110 00 0 00112222235799999999855
No 78
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=79.14 E-value=0.78 Score=27.93 Aligned_cols=12 Identities=25% Similarity=0.650 Sum_probs=7.2
Q ss_pred ccccccchhhcC
Q psy8169 17 NHMCELCYKVFE 28 (843)
Q Consensus 17 ~~~C~~C~~~f~ 28 (843)
.|+|..||.++.
T Consensus 2 ~~~C~~CG~i~~ 13 (34)
T cd00729 2 VWVCPVCGYIHE 13 (34)
T ss_pred eEECCCCCCEeE
Confidence 356666666653
No 79
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=78.67 E-value=0.76 Score=37.06 Aligned_cols=12 Identities=42% Similarity=0.861 Sum_probs=6.1
Q ss_pred cccccchhHhhc
Q psy8169 181 KYTCEICAKEFT 192 (843)
Q Consensus 181 ~~~C~~C~~~f~ 192 (843)
|..|+.||.+|.
T Consensus 9 KR~Cp~CG~kFY 20 (108)
T PF09538_consen 9 KRTCPSCGAKFY 20 (108)
T ss_pred cccCCCCcchhc
Confidence 344555555554
No 80
>KOG0717|consensus
Probab=78.46 E-value=3.5 Score=42.07 Aligned_cols=24 Identities=29% Similarity=0.692 Sum_probs=21.7
Q ss_pred ceecccccccccChHHHHHHHHhh
Q psy8169 446 IIQCHICLKTFAKKDSLKKHMKVF 469 (843)
Q Consensus 446 ~~~C~~C~~~f~~~~~L~~H~~~~ 469 (843)
...|.-|+.+|.++.-|..|++..
T Consensus 460 ~~~C~tCr~~FdSRnkLF~Hlk~t 483 (508)
T KOG0717|consen 460 LISCTTCRESFDSRNKLFAHLKKT 483 (508)
T ss_pred hHhhhhhhhhccchhHHHHHhhhc
Confidence 468999999999999999999864
No 81
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=77.68 E-value=0.69 Score=42.57 Aligned_cols=28 Identities=14% Similarity=0.284 Sum_probs=21.4
Q ss_pred CCCceeccccchhcCChhhHHHHHHHcc
Q psy8169 300 DDNQIQCRFCNKYFSRNYNLKQHMKTCT 327 (843)
Q Consensus 300 ~~~~~~C~~C~~~f~~~~~L~~H~~~h~ 327 (843)
..++++|+.|++.......|..-.++|.
T Consensus 206 k~k~~PCPKCg~et~eTkdLSmStR~hk 233 (314)
T PF06524_consen 206 KGKPIPCPKCGYETQETKDLSMSTRSHK 233 (314)
T ss_pred cCCCCCCCCCCCcccccccceeeeecch
Confidence 3478899999998888777776666664
No 82
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=76.51 E-value=1.5 Score=24.67 Aligned_cols=9 Identities=44% Similarity=1.269 Sum_probs=5.1
Q ss_pred CCcchhccC
Q psy8169 127 CDLCGKNFS 135 (843)
Q Consensus 127 C~~C~~~f~ 135 (843)
|+.||+.|.
T Consensus 17 Cp~CG~~F~ 25 (26)
T PF10571_consen 17 CPHCGYDFE 25 (26)
T ss_pred CCCCCCCCc
Confidence 566665553
No 83
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=75.38 E-value=0.68 Score=43.38 Aligned_cols=44 Identities=20% Similarity=0.430 Sum_probs=25.4
Q ss_pred CcccccccccccCCHHHHHHhHHhh---------ccCCCc-----eeCCCCCCcccch
Q psy8169 46 KRFKCEQCDKRFSSNAELNKHSSAI---------HQRLKL-----HECDLCGKNFSQR 89 (843)
Q Consensus 46 ~~~~C~~C~~~f~~~~~l~~H~~~~---------h~~~~~-----~~C~~C~~~f~~~ 89 (843)
+.++|++|++.|.++.-+....+.. ..+..| ..||.||++|...
T Consensus 4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~ 61 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEE 61 (214)
T ss_pred CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccc
Confidence 4566777777776654443333211 122333 5799999998654
No 84
>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.
Probab=74.48 E-value=2.4 Score=27.93 Aligned_cols=25 Identities=24% Similarity=0.724 Sum_probs=17.4
Q ss_pred cccccccccccCCh----HHHHHHHhhhc
Q psy8169 505 IIQCRICSKTFTRK----DSLRKHMRRFH 529 (843)
Q Consensus 505 ~~~C~~C~~~f~~~----~~L~~H~~~~H 529 (843)
...|.+|++.+... ++|.+|++..|
T Consensus 16 ~a~C~~C~~~~~~~~~~ts~l~~HL~~~h 44 (45)
T PF02892_consen 16 KAKCKYCGKVIKYSSGGTSNLKRHLKKKH 44 (45)
T ss_dssp -EEETTTTEE-----SSTHHHHHHHHHTT
T ss_pred eEEeCCCCeEEeeCCCcHHHHHHhhhhhC
Confidence 37999999988764 89999996645
No 85
>KOG2186|consensus
Probab=72.70 E-value=1.7 Score=40.15 Aligned_cols=12 Identities=17% Similarity=0.329 Sum_probs=5.2
Q ss_pred cccChHHHHHHH
Q psy8169 455 TFAKKDSLKKHM 466 (843)
Q Consensus 455 ~f~~~~~L~~H~ 466 (843)
.|.+...+..-+
T Consensus 210 ~f~wa~~~~~~~ 221 (276)
T KOG2186|consen 210 QFEWAKGIKEIL 221 (276)
T ss_pred chhHHHHHHHHH
Confidence 344444444443
No 86
>smart00614 ZnF_BED BED zinc finger. DNA-binding domain in chromatin-boundary-element-binding proteins and transposases
Probab=72.65 E-value=1.7 Score=29.50 Aligned_cols=25 Identities=32% Similarity=0.816 Sum_probs=21.1
Q ss_pred hhhchhhhhhhhh-----hhHHHHHhHhhc
Q psy8169 775 ILCKICNRTFTRN-----YNLKKHMKTVHK 799 (843)
Q Consensus 775 ~~C~~C~~~F~~~-----~~L~~H~~~~H~ 799 (843)
-.|..|++.+... ++|.+|++..|.
T Consensus 19 a~C~~C~~~l~~~~~~gTs~L~rHl~~~h~ 48 (50)
T smart00614 19 AKCKYCGKKLSRSSKGGTSNLRRHLRRKHP 48 (50)
T ss_pred EEecCCCCEeeeCCCCCcHHHHHHHHhHCc
Confidence 5699999999776 699999997664
No 87
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=71.78 E-value=2.6 Score=26.48 Aligned_cols=11 Identities=27% Similarity=0.785 Sum_probs=5.7
Q ss_pred ceeCCCCCCcc
Q psy8169 76 LHECDLCGKNF 86 (843)
Q Consensus 76 ~~~C~~C~~~f 86 (843)
...|+.|+..|
T Consensus 25 ~v~C~~C~~~~ 35 (38)
T TIGR02098 25 KVRCGKCGHVW 35 (38)
T ss_pred EEECCCCCCEE
Confidence 34555555544
No 88
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=71.54 E-value=3 Score=26.03 Aligned_cols=12 Identities=33% Similarity=0.866 Sum_probs=6.3
Q ss_pred CceeCCCCCCcc
Q psy8169 75 KLHECDLCGKNF 86 (843)
Q Consensus 75 ~~~~C~~C~~~f 86 (843)
...+|+.|+..|
T Consensus 24 ~~vrC~~C~~~f 35 (37)
T PF13719_consen 24 RKVRCPKCGHVF 35 (37)
T ss_pred cEEECCCCCcEe
Confidence 345555555544
No 89
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=71.01 E-value=1.1 Score=37.63 Aligned_cols=27 Identities=37% Similarity=0.845 Sum_probs=18.0
Q ss_pred hhhchhhhhhhhhhhHHHHHhHhhccCCCC
Q psy8169 775 ILCKICNRTFTRNYNLKKHMKTVHKIDDNE 804 (843)
Q Consensus 775 ~~C~~C~~~F~~~~~L~~H~~~~H~~~~~~ 804 (843)
..|-.||+.|.. |++|++.||+..+.+
T Consensus 73 i~clecGk~~k~---LkrHL~~~~gltp~e 99 (132)
T PF05443_consen 73 IICLECGKKFKT---LKRHLRTHHGLTPEE 99 (132)
T ss_dssp EE-TBT--EESB---HHHHHHHTT-S-HHH
T ss_pred eEEccCCcccch---HHHHHHHccCCCHHH
Confidence 679999999966 699999999975433
No 90
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=70.69 E-value=1.5 Score=38.21 Aligned_cols=18 Identities=28% Similarity=0.547 Sum_probs=14.0
Q ss_pred ccccchhhhhhhHHHHhh
Q psy8169 713 IRCELCDKSFTRKDSLKK 730 (843)
Q Consensus 713 ~~C~~C~~~f~~~~~L~~ 730 (843)
++|+-||++|.+...+..
T Consensus 29 ~~c~~c~~~f~~~e~~~~ 46 (154)
T PRK00464 29 RECLACGKRFTTFERVEL 46 (154)
T ss_pred eeccccCCcceEeEeccC
Confidence 789999999987655443
No 91
>KOG2186|consensus
Probab=70.16 E-value=2.3 Score=39.34 Aligned_cols=46 Identities=20% Similarity=0.562 Sum_probs=36.2
Q ss_pred ccccccchhhcCCHHHHHHHHhhccCCCCCcccccccccccCCHHHHHHhH
Q psy8169 17 NHMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHS 67 (843)
Q Consensus 17 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~ 67 (843)
.|.|..||.+.. +..|.+||-...+ .-|.|-.|++.|.. .....|.
T Consensus 3 ~FtCnvCgEsvK-Kp~vekH~srCrn---~~fSCIDC~k~F~~-~sYknH~ 48 (276)
T KOG2186|consen 3 FFTCNVCGESVK-KPQVEKHMSRCRN---AYFSCIDCGKTFER-VSYKNHT 48 (276)
T ss_pred EEehhhhhhhcc-ccchHHHHHhccC---CeeEEeeccccccc-chhhhhh
Confidence 478888988875 5677788887776 57889889988887 6777776
No 92
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.99 E-value=8 Score=31.27 Aligned_cols=21 Identities=19% Similarity=0.574 Sum_probs=15.5
Q ss_pred CccccCcccccccchhhHHHh
Q psy8169 211 NQLKCEFCGKVFLKKSNLKAH 231 (843)
Q Consensus 211 ~~~~C~~C~~~f~~~~~l~~H 231 (843)
-|-.|+.|+....+...|.+-
T Consensus 14 LP~~CpiCgLtLVss~HLARS 34 (112)
T TIGR00622 14 LPVECPICGLTLILSTHLARS 34 (112)
T ss_pred CCCcCCcCCCEEeccchHHHh
Confidence 467788888887777777654
No 93
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=68.87 E-value=3.2 Score=36.22 Aligned_cols=37 Identities=16% Similarity=0.457 Sum_probs=20.0
Q ss_pred CcccccccccccCCHHHHHHhHHhhccCCCceeCCCCCCccc
Q psy8169 46 KRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFS 87 (843)
Q Consensus 46 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~ 87 (843)
.-|.|+.|+..|.....+..- . ....|.|+.||....
T Consensus 98 ~~Y~Cp~C~~~y~~~ea~~~~----d-~~~~f~Cp~Cg~~l~ 134 (147)
T smart00531 98 AYYKCPNCQSKYTFLEANQLL----D-MDGTFTCPRCGEELE 134 (147)
T ss_pred cEEECcCCCCEeeHHHHHHhc----C-CCCcEECCCCCCEEE
Confidence 456777777777643332220 1 123377777776553
No 94
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=68.65 E-value=3.2 Score=27.49 Aligned_cols=12 Identities=25% Similarity=0.755 Sum_probs=8.2
Q ss_pred ceeCCCCCCccc
Q psy8169 76 LHECDLCGKNFS 87 (843)
Q Consensus 76 ~~~C~~C~~~f~ 87 (843)
.|+|+.||..|.
T Consensus 3 ~y~C~~CG~~~~ 14 (46)
T PRK00398 3 EYKCARCGREVE 14 (46)
T ss_pred EEECCCCCCEEE
Confidence 577777777654
No 95
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=67.60 E-value=4.8 Score=24.90 Aligned_cols=33 Identities=21% Similarity=0.545 Sum_probs=22.8
Q ss_pred eeCCCCCCcccchhhHHhhhcCCCCCCCCCChHHHhhhhhhhhcCCCcccCCcchhcc
Q psy8169 77 HECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRLKLHECDLCGKNF 134 (843)
Q Consensus 77 ~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~l~~h~~~~h~~~~~~~C~~C~~~f 134 (843)
..|+.|+..|.-.... +-......+|+.|+..|
T Consensus 3 i~Cp~C~~~y~i~d~~-------------------------ip~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 3 ITCPNCQAKYEIDDEK-------------------------IPPKGRKVRCSKCGHVF 35 (36)
T ss_pred EECCCCCCEEeCCHHH-------------------------CCCCCcEEECCCCCCEe
Confidence 4789999888654432 33444568899998877
No 96
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=66.71 E-value=6.8 Score=34.22 Aligned_cols=39 Identities=18% Similarity=0.379 Sum_probs=26.1
Q ss_pred CCcceeecCcChhccCChHHHHHHHHHhcCCCceeccccchhc
Q psy8169 271 ISNVYLTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYF 313 (843)
Q Consensus 271 ~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f 313 (843)
..+..|.|+.|+..|.....+.. .. ....|.|+.|+...
T Consensus 95 ~~~~~Y~Cp~C~~~y~~~ea~~~---~d-~~~~f~Cp~Cg~~l 133 (147)
T smart00531 95 TNNAYYKCPNCQSKYTFLEANQL---LD-MDGTFTCPRCGEEL 133 (147)
T ss_pred cCCcEEECcCCCCEeeHHHHHHh---cC-CCCcEECCCCCCEE
Confidence 34557999999998876544432 01 23449999998765
No 97
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=65.90 E-value=2.4 Score=34.21 Aligned_cols=30 Identities=23% Similarity=0.582 Sum_probs=17.8
Q ss_pred ccccccccccCCHHHHHHhHHhhccCCCceeCCCCCCcccch
Q psy8169 48 FKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQR 89 (843)
Q Consensus 48 ~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~ 89 (843)
..|+.||++|-.. +..|..|+.||..|.-.
T Consensus 10 R~Cp~CG~kFYDL------------nk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 10 RTCPSCGAKFYDL------------NKDPIVCPKCGTEFPPE 39 (108)
T ss_pred ccCCCCcchhccC------------CCCCccCCCCCCccCcc
Confidence 4567777766541 12456677777766554
No 98
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=65.72 E-value=5 Score=22.67 Aligned_cols=19 Identities=21% Similarity=0.683 Sum_probs=13.5
Q ss_pred ccccchhhcCCHHHHHHHHh
Q psy8169 19 MCELCYKVFESRENLMRHLK 38 (843)
Q Consensus 19 ~C~~C~~~f~~~~~l~~H~~ 38 (843)
.||+|++.+ +...+..|+.
T Consensus 3 ~CPiC~~~v-~~~~in~HLD 21 (26)
T smart00734 3 QCPVCFREV-PENLINSHLD 21 (26)
T ss_pred cCCCCcCcc-cHHHHHHHHH
Confidence 578888777 5667777764
No 99
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=64.98 E-value=2.4 Score=34.71 Aligned_cols=11 Identities=27% Similarity=0.458 Sum_probs=5.3
Q ss_pred cccCccccccc
Q psy8169 213 LKCEFCGKVFL 223 (843)
Q Consensus 213 ~~C~~C~~~f~ 223 (843)
..|+.||.+|.
T Consensus 10 r~Cp~cg~kFY 20 (129)
T TIGR02300 10 RICPNTGSKFY 20 (129)
T ss_pred ccCCCcCcccc
Confidence 34555555444
No 100
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=63.78 E-value=5 Score=26.19 Aligned_cols=27 Identities=19% Similarity=0.412 Sum_probs=17.8
Q ss_pred eeecCcChhccCChHHHHHHHHHhcCCCceeccccchh
Q psy8169 275 YLTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKY 312 (843)
Q Consensus 275 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~ 312 (843)
.|.|..|+..|.-. ...+.+|+.|+..
T Consensus 2 ~Y~C~~Cg~~~~~~-----------~~~~irC~~CG~r 28 (44)
T smart00659 2 IYICGECGRENEIK-----------SKDVVRCRECGYR 28 (44)
T ss_pred EEECCCCCCEeecC-----------CCCceECCCCCce
Confidence 47788887776532 3456778888765
No 101
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=62.15 E-value=5.4 Score=27.48 Aligned_cols=51 Identities=16% Similarity=0.380 Sum_probs=29.8
Q ss_pred ccccccchhhcCCHHHHHHHHhhccCCCCCcccccccccccCCHHHHHHhHHhhccCCCceeCCCCCCc
Q psy8169 17 NHMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKN 85 (843)
Q Consensus 17 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~ 85 (843)
+=.|.-|++... .++..-.|.|+.||..--..-. +.-....+|.|+.||+.
T Consensus 9 ~~~CtSCg~~i~------------p~e~~v~F~CPnCGe~~I~Rc~------~CRk~g~~Y~Cp~CGF~ 59 (61)
T COG2888 9 PPVCTSCGREIA------------PGETAVKFPCPNCGEVEIYRCA------KCRKLGNPYRCPKCGFE 59 (61)
T ss_pred CceeccCCCEec------------cCCceeEeeCCCCCceeeehhh------hHHHcCCceECCCcCcc
Confidence 346777777642 2333456889999865443322 11122468999999863
No 102
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=61.57 E-value=5.9 Score=35.03 Aligned_cols=31 Identities=26% Similarity=0.484 Sum_probs=18.5
Q ss_pred CcccccccccccCCHHHHHHhHHhhccCCCceeCCCCCCcc
Q psy8169 46 KRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNF 86 (843)
Q Consensus 46 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f 86 (843)
.-|.|+.|+..|+....+. .-|.|+.||...
T Consensus 108 ~~Y~Cp~c~~r~tf~eA~~----------~~F~Cp~Cg~~L 138 (158)
T TIGR00373 108 MFFICPNMCVRFTFNEAME----------LNFTCPRCGAML 138 (158)
T ss_pred CeEECCCCCcEeeHHHHHH----------cCCcCCCCCCEe
Confidence 4466666666666655553 146677776654
No 103
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=61.55 E-value=3.8 Score=35.96 Aligned_cols=9 Identities=33% Similarity=0.807 Sum_probs=8.5
Q ss_pred CCCcccccc
Q psy8169 663 IPCTLCDKT 671 (843)
Q Consensus 663 ~~C~~C~~~ 671 (843)
|.|++||+.
T Consensus 135 ~vC~vCGy~ 143 (166)
T COG1592 135 WVCPVCGYT 143 (166)
T ss_pred EEcCCCCCc
Confidence 999999987
No 104
>KOG2071|consensus
Probab=60.69 E-value=16 Score=39.04 Aligned_cols=15 Identities=20% Similarity=0.691 Sum_probs=11.9
Q ss_pred CCCCCCccccccccc
Q psy8169 660 IDRIPCTLCDKTFTR 674 (843)
Q Consensus 660 ~~~~~C~~C~~~f~~ 674 (843)
.....|++|+..|..
T Consensus 511 e~~~~C~IC~EkFe~ 525 (579)
T KOG2071|consen 511 ERQASCPICQEKFEV 525 (579)
T ss_pred ccccCCcccccccce
Confidence 344899999999864
No 105
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=60.39 E-value=5.6 Score=44.67 Aligned_cols=13 Identities=31% Similarity=0.805 Sum_probs=7.3
Q ss_pred hcCCCcccCCcch
Q psy8169 119 HQRLKLHECDLCG 131 (843)
Q Consensus 119 h~~~~~~~C~~C~ 131 (843)
|...+...|.+||
T Consensus 457 H~~~~~L~CH~Cg 469 (730)
T COG1198 457 HKATGQLRCHYCG 469 (730)
T ss_pred ecCCCeeEeCCCC
Confidence 4444555666666
No 106
>PF12907 zf-met2: Zinc-binding
Probab=59.81 E-value=5.5 Score=25.24 Aligned_cols=26 Identities=42% Similarity=0.824 Sum_probs=21.7
Q ss_pred hhhchhhhhhhhh---hhHHHHHhHhhcc
Q psy8169 775 ILCKICNRTFTRN---YNLKKHMKTVHKI 800 (843)
Q Consensus 775 ~~C~~C~~~F~~~---~~L~~H~~~~H~~ 800 (843)
+.|.+|-.+|... ..|+.|....|.-
T Consensus 2 i~C~iC~qtF~~t~~~~~L~eH~enKHpK 30 (40)
T PF12907_consen 2 IICKICRQTFMQTTNEPQLKEHAENKHPK 30 (40)
T ss_pred cCcHHhhHHHHhcCCHHHHHHHHHccCCC
Confidence 6799999888554 5699999999975
No 107
>PF15269 zf-C2H2_7: Zinc-finger
Probab=59.68 E-value=9.1 Score=24.31 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.5
Q ss_pred CcccccccccccCChHHHHHHHhh
Q psy8169 504 AIIQCRICSKTFTRKDSLRKHMRR 527 (843)
Q Consensus 504 ~~~~C~~C~~~f~~~~~L~~H~~~ 527 (843)
-.|+|-.|.++...++.|-.||+.
T Consensus 19 ~~ykcfqcpftc~~kshl~nhmky 42 (54)
T PF15269_consen 19 FKYKCFQCPFTCNEKSHLFNHMKY 42 (54)
T ss_pred ccceeecCCcccchHHHHHHHHHH
Confidence 348999999999999999999975
No 108
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=59.36 E-value=5.2 Score=26.61 Aligned_cols=12 Identities=25% Similarity=0.711 Sum_probs=10.4
Q ss_pred CceeCCCCCCcc
Q psy8169 75 KLHECDLCGKNF 86 (843)
Q Consensus 75 ~~~~C~~C~~~f 86 (843)
..|+|..||+.|
T Consensus 5 ~~Y~C~~Cg~~~ 16 (49)
T COG1996 5 MEYKCARCGREV 16 (49)
T ss_pred EEEEhhhcCCee
Confidence 468999999988
No 109
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=58.16 E-value=9.8 Score=33.66 Aligned_cols=33 Identities=15% Similarity=0.397 Sum_probs=24.0
Q ss_pred CcceeecCcChhccCChHHHHHHHHHhcCCCceeccccchhc
Q psy8169 272 SNVYLTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYF 313 (843)
Q Consensus 272 ~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f 313 (843)
.+..|.|+.|+..|+...++. ..|.|+.||...
T Consensus 106 ~~~~Y~Cp~c~~r~tf~eA~~---------~~F~Cp~Cg~~L 138 (158)
T TIGR00373 106 NNMFFICPNMCVRFTFNEAME---------LNFTCPRCGAML 138 (158)
T ss_pred CCCeEECCCCCcEeeHHHHHH---------cCCcCCCCCCEe
Confidence 344788888888887777775 258888888653
No 110
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=57.66 E-value=5.7 Score=27.49 Aligned_cols=10 Identities=20% Similarity=0.760 Sum_probs=8.6
Q ss_pred CCCCcccccc
Q psy8169 662 RIPCTLCDKT 671 (843)
Q Consensus 662 ~~~C~~C~~~ 671 (843)
.|.|+.||..
T Consensus 25 ~F~CPnCG~~ 34 (59)
T PRK14890 25 KFLCPNCGEV 34 (59)
T ss_pred EeeCCCCCCe
Confidence 4899999987
No 111
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=57.63 E-value=7.1 Score=35.30 Aligned_cols=33 Identities=24% Similarity=0.615 Sum_probs=20.5
Q ss_pred CcccccccccccCCHHHHHHhHHhhccCCCceeCCCCCCcccc
Q psy8169 46 KRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQ 88 (843)
Q Consensus 46 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~ 88 (843)
.-|.|+.|+..|+....+. .-|.|+.||.....
T Consensus 116 ~~Y~Cp~C~~rytf~eA~~----------~~F~Cp~Cg~~L~~ 148 (178)
T PRK06266 116 MFFFCPNCHIRFTFDEAME----------YGFRCPQCGEMLEE 148 (178)
T ss_pred CEEECCCCCcEEeHHHHhh----------cCCcCCCCCCCCee
Confidence 4567777777777655542 24777777766543
No 112
>PF15269 zf-C2H2_7: Zinc-finger
Probab=57.04 E-value=7.8 Score=24.60 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.9
Q ss_pred CCCCccccccccchhhhhhhhhc
Q psy8169 662 RIPCTLCDKTFTRKDSLKKHIRI 684 (843)
Q Consensus 662 ~~~C~~C~~~f~~~~~L~~H~~~ 684 (843)
.|+|-.|+++..-++.|..||+.
T Consensus 20 ~ykcfqcpftc~~kshl~nhmky 42 (54)
T PF15269_consen 20 KYKCFQCPFTCNEKSHLFNHMKY 42 (54)
T ss_pred cceeecCCcccchHHHHHHHHHH
Confidence 37899999999999999999975
No 113
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=56.93 E-value=6.5 Score=34.57 Aligned_cols=24 Identities=25% Similarity=0.589 Sum_probs=19.5
Q ss_pred eeecCcChhccCChHHHHHHHHHhcCCCceeccccch
Q psy8169 275 YLTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNK 311 (843)
Q Consensus 275 ~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~ 311 (843)
.|.|++||.+ +-++.|-+||+|+-
T Consensus 134 ~~vC~vCGy~-------------~~ge~P~~CPiCga 157 (166)
T COG1592 134 VWVCPVCGYT-------------HEGEAPEVCPICGA 157 (166)
T ss_pred EEEcCCCCCc-------------ccCCCCCcCCCCCC
Confidence 6999999986 44678899999983
No 114
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=56.90 E-value=3.1 Score=26.85 Aligned_cols=18 Identities=22% Similarity=0.540 Sum_probs=13.6
Q ss_pred CCCccccccccchhhhhh
Q psy8169 663 IPCTLCDKTFTRKDSLKK 680 (843)
Q Consensus 663 ~~C~~C~~~f~~~~~L~~ 680 (843)
|+|..||..|.....+..
T Consensus 6 y~C~~Cg~~fe~~~~~~~ 23 (42)
T PF09723_consen 6 YRCEECGHEFEVLQSISE 23 (42)
T ss_pred EEeCCCCCEEEEEEEcCC
Confidence 899999999876654433
No 115
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=56.67 E-value=10 Score=34.24 Aligned_cols=32 Identities=19% Similarity=0.571 Sum_probs=22.5
Q ss_pred cceeecCcChhccCChHHHHHHHHHhcCCCceeccccchhc
Q psy8169 273 NVYLTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYF 313 (843)
Q Consensus 273 ~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f 313 (843)
+..|.|+.|+..|+...++. ..|.|+.||...
T Consensus 115 ~~~Y~Cp~C~~rytf~eA~~---------~~F~Cp~Cg~~L 146 (178)
T PRK06266 115 NMFFFCPNCHIRFTFDEAME---------YGFRCPQCGEML 146 (178)
T ss_pred CCEEECCCCCcEEeHHHHhh---------cCCcCCCCCCCC
Confidence 34788888888877666653 358888887654
No 116
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=56.21 E-value=6.3 Score=36.54 Aligned_cols=29 Identities=28% Similarity=0.557 Sum_probs=23.0
Q ss_pred CCCcccccccccccCChHHHHHHHhhhcc
Q psy8169 502 NNAIIQCRICSKTFTRKDSLRKHMRRFHI 530 (843)
Q Consensus 502 ~~~~~~C~~C~~~f~~~~~L~~H~~~~H~ 530 (843)
....|.|..|++.|.-..-+++||...|.
T Consensus 74 ~~~K~~C~lc~KlFkg~eFV~KHI~nKH~ 102 (214)
T PF04959_consen 74 DEDKWRCPLCGKLFKGPEFVRKHIFNKHP 102 (214)
T ss_dssp SSEEEEE-SSS-EESSHHHHHHHHHHH-H
T ss_pred cCCEECCCCCCcccCChHHHHHHHhhcCH
Confidence 34459999999999999999999999886
No 117
>PF12907 zf-met2: Zinc-binding
Probab=55.78 E-value=4.3 Score=25.72 Aligned_cols=30 Identities=33% Similarity=0.618 Sum_probs=24.0
Q ss_pred CCCcccccccc---chhhhhhhhhccccCCCCC
Q psy8169 663 IPCTLCDKTFT---RKDSLKKHIRIFHTQNQPQ 692 (843)
Q Consensus 663 ~~C~~C~~~f~---~~~~L~~H~~~~H~~~~p~ 692 (843)
++|.+|-.+|. +...|..|....|....+.
T Consensus 2 i~C~iC~qtF~~t~~~~~L~eH~enKHpK~~~~ 34 (40)
T PF12907_consen 2 IICKICRQTFMQTTNEPQLKEHAENKHPKNTFE 34 (40)
T ss_pred cCcHHhhHHHHhcCCHHHHHHHHHccCCCCCHH
Confidence 78999996665 5567999999889886553
No 118
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=54.93 E-value=5.7 Score=36.88 Aligned_cols=19 Identities=21% Similarity=0.501 Sum_probs=10.9
Q ss_pred CccccCcccccccchhhHH
Q psy8169 211 NQLKCEFCGKVFLKKSNLK 229 (843)
Q Consensus 211 ~~~~C~~C~~~f~~~~~l~ 229 (843)
+++.|+.|++....-..|.
T Consensus 208 k~~PCPKCg~et~eTkdLS 226 (314)
T PF06524_consen 208 KPIPCPKCGYETQETKDLS 226 (314)
T ss_pred CCCCCCCCCCcccccccce
Confidence 4566666666555544444
No 119
>COG5188 PRP9 Splicing factor 3a, subunit 3 [RNA processing and modification]
Probab=53.70 E-value=20 Score=35.05 Aligned_cols=22 Identities=23% Similarity=0.676 Sum_probs=20.1
Q ss_pred ccccccccccCChHHHHHHHhh
Q psy8169 506 IQCRICSKTFTRKDSLRKHMRR 527 (843)
Q Consensus 506 ~~C~~C~~~f~~~~~L~~H~~~ 527 (843)
+-|..|++.|.+...+..|+..
T Consensus 239 ~YC~~C~r~f~~~~VFe~Hl~g 260 (470)
T COG5188 239 VYCVKCGREFSRSKVFEYHLEG 260 (470)
T ss_pred eeeHhhhhHhhhhHHHHHHHhh
Confidence 6799999999999999999864
No 120
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=53.29 E-value=4.4 Score=25.93 Aligned_cols=16 Identities=25% Similarity=0.565 Sum_probs=12.3
Q ss_pred CCCccccccccchhhh
Q psy8169 663 IPCTLCDKTFTRKDSL 678 (843)
Q Consensus 663 ~~C~~C~~~f~~~~~L 678 (843)
|+|+.||..|......
T Consensus 6 y~C~~Cg~~fe~~~~~ 21 (41)
T smart00834 6 YRCEDCGHTFEVLQKI 21 (41)
T ss_pred EEcCCCCCEEEEEEec
Confidence 8999999988755443
No 121
>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []. Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.
Probab=52.81 E-value=7 Score=36.23 Aligned_cols=26 Identities=23% Similarity=0.473 Sum_probs=21.9
Q ss_pred hhhchhhhhhhhhhhHHHHHhHhhcc
Q psy8169 775 ILCKICNRTFTRNYNLKKHMKTVHKI 800 (843)
Q Consensus 775 ~~C~~C~~~F~~~~~L~~H~~~~H~~ 800 (843)
|.|.+|+|.|.-..-+++|+...|..
T Consensus 78 ~~C~lc~KlFkg~eFV~KHI~nKH~e 103 (214)
T PF04959_consen 78 WRCPLCGKLFKGPEFVRKHIFNKHPE 103 (214)
T ss_dssp EEE-SSS-EESSHHHHHHHHHHH-HH
T ss_pred ECCCCCCcccCChHHHHHHHhhcCHH
Confidence 99999999999999999999999974
No 122
>KOG0717|consensus
Probab=49.42 E-value=22 Score=36.70 Aligned_cols=23 Identities=26% Similarity=0.842 Sum_probs=21.2
Q ss_pred cccccccccccCChHHHHHHHhh
Q psy8169 505 IIQCRICSKTFTRKDSLRKHMRR 527 (843)
Q Consensus 505 ~~~C~~C~~~f~~~~~L~~H~~~ 527 (843)
...|..|+.+|.++..|-.|+..
T Consensus 460 ~~~C~tCr~~FdSRnkLF~Hlk~ 482 (508)
T KOG0717|consen 460 LISCTTCRESFDSRNKLFAHLKK 482 (508)
T ss_pred hHhhhhhhhhccchhHHHHHhhh
Confidence 37899999999999999999986
No 123
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=46.78 E-value=6.3 Score=26.92 Aligned_cols=13 Identities=31% Similarity=0.667 Sum_probs=11.2
Q ss_pred CCCccccccccch
Q psy8169 663 IPCTLCDKTFTRK 675 (843)
Q Consensus 663 ~~C~~C~~~f~~~ 675 (843)
|+|..||..|...
T Consensus 6 y~C~~Cg~~fe~~ 18 (52)
T TIGR02605 6 YRCTACGHRFEVL 18 (52)
T ss_pred EEeCCCCCEeEEE
Confidence 8999999999854
No 124
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=46.74 E-value=6.2 Score=32.46 Aligned_cols=28 Identities=29% Similarity=0.491 Sum_probs=23.2
Q ss_pred hhhchhhhhhhhhhhHHHHHhHhhccCCCCc
Q psy8169 775 ILCKICNRTFTRNYNLKKHMKTVHKIDDNEP 805 (843)
Q Consensus 775 ~~C~~C~~~F~~~~~L~~H~~~~H~~~~~~~ 805 (843)
+.|-.+|+.|.+ |++|+.+||+..+++.
T Consensus 77 IicLEDGkkfKS---LKRHL~t~~gmTPd~Y 104 (148)
T COG4957 77 IICLEDGKKFKS---LKRHLTTHYGLTPDEY 104 (148)
T ss_pred EEEeccCcchHH---HHHHHhcccCCCHHHH
Confidence 579999999965 9999999999755443
No 125
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=45.31 E-value=10 Score=22.74 Aligned_cols=6 Identities=50% Similarity=1.547 Sum_probs=2.3
Q ss_pred ccCccc
Q psy8169 214 KCEFCG 219 (843)
Q Consensus 214 ~C~~C~ 219 (843)
+|+.||
T Consensus 19 rC~~CG 24 (32)
T PF03604_consen 19 RCPECG 24 (32)
T ss_dssp SBSSSS
T ss_pred ECCcCC
Confidence 333333
No 126
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=45.18 E-value=21 Score=34.23 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=10.7
Q ss_pred cccCCcchhccCChhHHHHhHh
Q psy8169 124 LHECDLCGKNFSQRNNLKRHLE 145 (843)
Q Consensus 124 ~~~C~~C~~~f~~~~~l~~H~~ 145 (843)
.|+|+.|...|-..-+.-.|..
T Consensus 388 rY~Ce~CK~~FC~dCdvfiHe~ 409 (421)
T COG5151 388 RYQCELCKSTFCSDCDVFIHET 409 (421)
T ss_pred ceechhhhhhhhhhhHHHHHHH
Confidence 3555555555544444444443
No 127
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=44.64 E-value=12 Score=28.37 Aligned_cols=31 Identities=29% Similarity=0.663 Sum_probs=21.3
Q ss_pred CcccCCcchhccCChhHHHHhHhhhcCCCCccccccccccccc
Q psy8169 123 KLHECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLA 165 (843)
Q Consensus 123 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~C~~~f~ 165 (843)
..|.|+.|++.- +-+.....+.|..|++.|.
T Consensus 34 ~~~~Cp~C~~~~------------VkR~a~GIW~C~kCg~~fA 64 (89)
T COG1997 34 AKHVCPFCGRTT------------VKRIATGIWKCRKCGAKFA 64 (89)
T ss_pred cCCcCCCCCCcc------------eeeeccCeEEcCCCCCeec
Confidence 468888888762 1224455788888888886
No 128
>PF14353 CpXC: CpXC protein
Probab=44.22 E-value=3.6 Score=34.97 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=18.0
Q ss_pred ccccccccccCChHHHHHHHhh
Q psy8169 506 IQCRICSKTFTRKDSLRKHMRR 527 (843)
Q Consensus 506 ~~C~~C~~~f~~~~~L~~H~~~ 527 (843)
|.|+.||..|.-...+..|-..
T Consensus 39 ~~CP~Cg~~~~~~~p~lY~D~~ 60 (128)
T PF14353_consen 39 FTCPSCGHKFRLEYPLLYHDPE 60 (128)
T ss_pred EECCCCCCceecCCCEEEEcCC
Confidence 8999999999887777766554
No 129
>KOG2593|consensus
Probab=42.99 E-value=16 Score=37.36 Aligned_cols=36 Identities=22% Similarity=0.595 Sum_probs=22.4
Q ss_pred CcccccccccccCCHHHHHHhHHhhccCCCceeCCCCCCc
Q psy8169 46 KRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKN 85 (843)
Q Consensus 46 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~ 85 (843)
..|.|+.|.++|+....|.-= -.....|.|..|+--
T Consensus 127 ~~Y~Cp~C~kkyt~Lea~~L~----~~~~~~F~C~~C~ge 162 (436)
T KOG2593|consen 127 AGYVCPNCQKKYTSLEALQLL----DNETGEFHCENCGGE 162 (436)
T ss_pred ccccCCccccchhhhHHHHhh----cccCceEEEecCCCc
Confidence 467788888877765554322 223456788888654
No 130
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.61 E-value=18 Score=26.36 Aligned_cols=20 Identities=15% Similarity=0.373 Sum_probs=14.6
Q ss_pred cccccccchhhhhhhHHHHhhhhh
Q psy8169 710 IDRIRCELCDKSFTRKDSLKKHNR 733 (843)
Q Consensus 710 ~~~~~C~~C~~~f~~~~~L~~H~~ 733 (843)
+-.|+|..|+..|. +.+||+
T Consensus 10 tY~Y~c~~cg~~~d----vvq~~~ 29 (82)
T COG2331 10 TYSYECTECGNRFD----VVQAMT 29 (82)
T ss_pred ceEEeecccchHHH----HHHhcc
Confidence 34599999999875 556665
No 131
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=41.87 E-value=2.7 Score=45.66 Aligned_cols=63 Identities=21% Similarity=0.401 Sum_probs=40.3
Q ss_pred ccccchhhcCCHHHHHHHHhhccCCCCCcc-cccccccccCCHHHHHHhHHhhccCCCce-eCCCCCCcccchhhH
Q psy8169 19 MCELCYKVFESRENLMRHLKIHDDKESKRF-KCEQCDKRFSSNAELNKHSSAIHQRLKLH-ECDLCGKNFSQRNNL 92 (843)
Q Consensus 19 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~-~C~~C~~~f~~~~~l~~H~~~~h~~~~~~-~C~~C~~~f~~~~~l 92 (843)
.|+.|-+.+.++.+-..+ -|| .|..||-+|+-...|-.- +.++....| .|+.|.+.+....+.
T Consensus 103 ~C~~Cl~Ei~dp~~rrY~---------YPF~~CT~CGPRfTIi~alPYD--R~nTsM~~F~lC~~C~~EY~dP~nR 167 (750)
T COG0068 103 TCEDCLEEIFDPNSRRYL---------YPFINCTNCGPRFTIIEALPYD--RENTSMADFPLCPFCDKEYKDPLNR 167 (750)
T ss_pred hhHHHHHHhcCCCCccee---------ccccccCCCCcceeeeccCCCC--cccCccccCcCCHHHHHHhcCcccc
Confidence 577777665444222211 234 499999999987776555 334555555 599998888776665
No 132
>PRK14873 primosome assembly protein PriA; Provisional
Probab=41.84 E-value=17 Score=40.93 Aligned_cols=14 Identities=21% Similarity=0.532 Sum_probs=10.0
Q ss_pred ccCCCceeCCCCCC
Q psy8169 71 HQRLKLHECDLCGK 84 (843)
Q Consensus 71 h~~~~~~~C~~C~~ 84 (843)
|.......|.+||+
T Consensus 405 h~~~~~l~Ch~CG~ 418 (665)
T PRK14873 405 PSAGGTPRCRWCGR 418 (665)
T ss_pred ecCCCeeECCCCcC
Confidence 44556778888885
No 133
>KOG4377|consensus
Probab=41.60 E-value=12 Score=37.61 Aligned_cols=26 Identities=12% Similarity=0.370 Sum_probs=21.2
Q ss_pred eeccc--cchhcCChhhHHHHHHHccCC
Q psy8169 304 IQCRF--CNKYFSRNYNLKQHMKTCTKN 329 (843)
Q Consensus 304 ~~C~~--C~~~f~~~~~L~~H~~~h~~~ 329 (843)
|.|.. |+..+.+.+.+..|.+.|...
T Consensus 402 fhc~r~Gc~~tl~s~sqm~shkrkheRq 429 (480)
T KOG4377|consen 402 FHCDRLGCEATLYSVSQMASHKRKHERQ 429 (480)
T ss_pred eeecccCCceEEEehhhhhhhhhhhhhh
Confidence 55665 999999999999999888643
No 134
>KOG4167|consensus
Probab=40.04 E-value=11 Score=40.87 Aligned_cols=26 Identities=31% Similarity=0.676 Sum_probs=24.0
Q ss_pred ccccchhHhhcCHHHHHHHHhhccCc
Q psy8169 182 YTCEICAKEFTRVYELNIHKKLHEDE 207 (843)
Q Consensus 182 ~~C~~C~~~f~~~~~L~~H~~~h~~~ 207 (843)
|.|..|++.|.....+..||++|.-.
T Consensus 793 FpCreC~kvF~KiKSrNAHMK~Hr~q 818 (907)
T KOG4167|consen 793 FPCRECGKVFFKIKSRNAHMKTHRQQ 818 (907)
T ss_pred eehHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999999999999999643
No 135
>KOG4377|consensus
Probab=39.95 E-value=29 Score=35.03 Aligned_cols=36 Identities=19% Similarity=0.409 Sum_probs=28.8
Q ss_pred cchhhch--hhhhhhhhhhHHHHHhHhhccCCCCceee
Q psy8169 773 NEILCKI--CNRTFTRNYNLKKHMKTVHKIDDNEPYFA 808 (843)
Q Consensus 773 ~~~~C~~--C~~~F~~~~~L~~H~~~~H~~~~~~~~~~ 808 (843)
..|.|.. |+..|..-+.+..|-|.|-.....+|.+.
T Consensus 400 nhfhc~r~Gc~~tl~s~sqm~shkrkheRqeqgepaa~ 437 (480)
T KOG4377|consen 400 NHFHCDRLGCEATLYSVSQMASHKRKHERQEQGEPAAT 437 (480)
T ss_pred eeeeecccCCceEEEehhhhhhhhhhhhhhhhcccccc
Confidence 3467766 99999999999999999888766666544
No 136
>KOG1280|consensus
Probab=39.60 E-value=22 Score=34.94 Aligned_cols=40 Identities=18% Similarity=0.385 Sum_probs=28.4
Q ss_pred CcccCCcchhccCChhHHHHhHhhhcCCCCcccccccccc
Q psy8169 123 KLHECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSK 162 (843)
Q Consensus 123 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~C~~ 162 (843)
..|.|++|+..-.+...|..|+...|........|++|..
T Consensus 78 qSftCPyC~~~Gfte~~f~~Hv~s~Hpda~~~~icp~c~~ 117 (381)
T KOG1280|consen 78 QSFTCPYCGIMGFTERQFGTHVLSQHPEASTSVICPLCAA 117 (381)
T ss_pred ccccCCcccccccchhHHHHHhhhcCcccCcceeeecccc
Confidence 3688888888888888888888877743333455666653
No 137
>KOG2807|consensus
Probab=38.79 E-value=32 Score=33.58 Aligned_cols=35 Identities=23% Similarity=0.517 Sum_probs=24.8
Q ss_pred CcccccccccccCCHHHHHHhHHhhccCCCceeCCCCCCcccchhhHHhh
Q psy8169 46 KRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRQ 95 (843)
Q Consensus 46 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~~l~~H 95 (843)
.-|.|+.|.... -.-|-.|+.|+-......+|.+-
T Consensus 275 ~Gy~CP~Ckakv---------------CsLP~eCpiC~ltLVss~hLARS 309 (378)
T KOG2807|consen 275 GGYFCPQCKAKV---------------CSLPIECPICSLTLVSSPHLARS 309 (378)
T ss_pred CceeCCcccCee---------------ecCCccCCccceeEecchHHHHH
Confidence 458888885331 13477899999888888887654
No 138
>KOG2593|consensus
Probab=37.66 E-value=21 Score=36.58 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=18.0
Q ss_pred CCCcccccccccccCChHHHHH
Q psy8169 502 NNAIIQCRICSKTFTRKDSLRK 523 (843)
Q Consensus 502 ~~~~~~C~~C~~~f~~~~~L~~ 523 (843)
....|.|+.|++.|+....++.
T Consensus 125 ~~~~Y~Cp~C~kkyt~Lea~~L 146 (436)
T KOG2593|consen 125 NVAGYVCPNCQKKYTSLEALQL 146 (436)
T ss_pred ccccccCCccccchhhhHHHHh
Confidence 4445999999999999888764
No 139
>KOG4124|consensus
Probab=37.11 E-value=8.2 Score=37.60 Aligned_cols=71 Identities=23% Similarity=0.374 Sum_probs=44.9
Q ss_pred CCceeCCC--CCCcccchhhHHhhhcCCCCCCCCCChHHHhhhhhhhhcCCCcccCCcchhccCChhHHHHhHh
Q psy8169 74 LKLHECDL--CGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRHLE 145 (843)
Q Consensus 74 ~~~~~C~~--C~~~f~~~~~l~~H~~~~~~~~~~~~~~~l~~h~~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~ 145 (843)
.++|+|++ |.+.......|+.|.....|.........-..|. -.....|+|+|++|.+..+....|+-|..
T Consensus 347 ~~~~~~~vp~~~~~~~n~ng~~~~~~~~h~s~i~~~s~~~~ph~-~~~~~nk~~r~~i~~~~~k~~~~l~~~~~ 419 (442)
T KOG4124|consen 347 DKPYKCPVPNCDKAYKNQNGLKYHKLHGHCSPITTPTPAPIPHQ-GFVVENKPYRCEVCSKRYKNLNGLKYHRT 419 (442)
T ss_pred cCCCCCCCCcchhhcccCcceeeccccCcCCCCCCCCCCCCCcc-eeeeccCcccChhhhhhhccCCCCCceee
Confidence 45789965 9999999888988877555554332222112222 12234578888888888777766666643
No 140
>KOG1842|consensus
Probab=37.01 E-value=19 Score=36.66 Aligned_cols=36 Identities=22% Similarity=0.423 Sum_probs=30.2
Q ss_pred cchhhchhhhhhhhhhhHHHHHhHhhccCCCCceee
Q psy8169 773 NEILCKICNRTFTRNYNLKKHMKTVHKIDDNEPYFA 808 (843)
Q Consensus 773 ~~~~C~~C~~~F~~~~~L~~H~~~~H~~~~~~~~~~ 808 (843)
..|.|++|...|.....|..|+-..|...++.-..+
T Consensus 14 egflCPiC~~dl~~~~~L~~H~d~eH~~ed~~D~lg 49 (505)
T KOG1842|consen 14 EGFLCPICLLDLPNLSALNDHLDVEHFEEDEKDSLG 49 (505)
T ss_pred hcccCchHhhhhhhHHHHHHHHhhhccccchhhHhh
Confidence 349999999999999999999999999877643333
No 141
>KOG1280|consensus
Probab=35.82 E-value=34 Score=33.74 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=26.1
Q ss_pred CceecccccccccChHHHHHHHHhhccCCC
Q psy8169 445 KIIQCHICLKTFAKKDSLKKHMKVFHTYIS 474 (843)
Q Consensus 445 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~ 474 (843)
..|.|++|+..-.+...|..|+...|....
T Consensus 78 qSftCPyC~~~Gfte~~f~~Hv~s~Hpda~ 107 (381)
T KOG1280|consen 78 QSFTCPYCGIMGFTERQFGTHVLSQHPEAS 107 (381)
T ss_pred ccccCCcccccccchhHHHHHhhhcCcccC
Confidence 369999999999999999999999887643
No 142
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.16 E-value=24 Score=38.51 Aligned_cols=17 Identities=24% Similarity=0.612 Sum_probs=12.2
Q ss_pred hhccCCCceeCCCCCCc
Q psy8169 69 AIHQRLKLHECDLCGKN 85 (843)
Q Consensus 69 ~~h~~~~~~~C~~C~~~ 85 (843)
+.|.......|..||+.
T Consensus 233 ~~h~~~~~l~Ch~Cg~~ 249 (505)
T TIGR00595 233 TYHKKEGKLRCHYCGYQ 249 (505)
T ss_pred EEecCCCeEEcCCCcCc
Confidence 44555667889999865
No 143
>PF05443 ROS_MUCR: ROS/MUCR transcriptional regulator protein; InterPro: IPR008807 This family consists of several ROS/MUCR transcriptional regulator proteins. The ros chromosomal gene is present in octopine and nopaline strains of Agrobacterium tumefaciens as well as in Rhizobium meliloti (Sinorhizobium meliloti). This gene encodes a 15.5 kDa protein that specifically represses the virC and virD operons in the virulence region of the Ti plasmid [] and is necessary for succinoglycan production []. S. meliloti can produce two types of acidic exopolysaccharides, succinoglycan and galactoglucan, that are interchangeable for infection of Medicago sativa (Alfalfa) nodules. MucR from S. meliloti acts as a transcriptional repressor that blocks the expression of the exp genes responsible for galactoglucan production therefore allowing the exclusive production of succinoglycan [].; GO: 0003677 DNA binding, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2JSP_A.
Probab=34.96 E-value=21 Score=30.15 Aligned_cols=25 Identities=32% Similarity=0.588 Sum_probs=16.3
Q ss_pred CCccccccchhhcCCHHHHHHHHhhccC
Q psy8169 15 VENHMCELCYKVFESRENLMRHLKIHDD 42 (843)
Q Consensus 15 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~ 42 (843)
..-..|-+||+.|++. .+|++.|+|
T Consensus 70 ~d~i~clecGk~~k~L---krHL~~~~g 94 (132)
T PF05443_consen 70 PDYIICLECGKKFKTL---KRHLRTHHG 94 (132)
T ss_dssp SS-EE-TBT--EESBH---HHHHHHTT-
T ss_pred cCeeEEccCCcccchH---HHHHHHccC
Confidence 4457899999999764 899999976
No 144
>PRK09678 DNA-binding transcriptional regulator; Provisional
Probab=34.82 E-value=8.5 Score=28.35 Aligned_cols=41 Identities=15% Similarity=0.271 Sum_probs=21.0
Q ss_pred eecCcChhccCChHHHHHHHHHhcCCCceecc--ccchhcCChhh
Q psy8169 276 LTCLICFKTFLTEVDLGKHMKMHMDDNQIQCR--FCNKYFSRNYN 318 (843)
Q Consensus 276 ~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~--~C~~~f~~~~~ 318 (843)
+.|+.|+....-...-..+-. ..+.-++|. .|+.+|.+...
T Consensus 2 m~CP~Cg~~a~irtSr~~s~~--~~~~Y~qC~N~eCg~tF~t~es 44 (72)
T PRK09678 2 FHCPLCQHAAHARTSRYITDT--TKERYHQCQNVNCSATFITYES 44 (72)
T ss_pred ccCCCCCCccEEEEChhcChh--hheeeeecCCCCCCCEEEEEEE
Confidence 356666655422222222111 334556787 78888876543
No 145
>PF13451 zf-trcl: Probable zinc-binding domain
Probab=34.48 E-value=22 Score=23.79 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=8.7
Q ss_pred CccccccchhhcCCHHHH
Q psy8169 16 ENHMCELCYKVFESRENL 33 (843)
Q Consensus 16 ~~~~C~~C~~~f~~~~~l 33 (843)
+.+.|..||..|.-...=
T Consensus 3 k~l~C~dCg~~FvfTa~E 20 (49)
T PF13451_consen 3 KTLTCKDCGAEFVFTAGE 20 (49)
T ss_pred eeEEcccCCCeEEEehhH
Confidence 344555555555444333
No 146
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=33.89 E-value=15 Score=25.29 Aligned_cols=12 Identities=17% Similarity=0.498 Sum_probs=9.3
Q ss_pred CCCccccccccc
Q psy8169 663 IPCTLCDKTFTR 674 (843)
Q Consensus 663 ~~C~~C~~~f~~ 674 (843)
|.|+.||..+.-
T Consensus 3 ~~CP~CG~~iev 14 (54)
T TIGR01206 3 FECPDCGAEIEL 14 (54)
T ss_pred cCCCCCCCEEec
Confidence 789999987643
No 147
>KOG3940|consensus
Probab=32.77 E-value=51 Score=31.90 Aligned_cols=25 Identities=24% Similarity=0.687 Sum_probs=20.6
Q ss_pred CCCCCCCccccccccchhhhhhhhhc
Q psy8169 659 PIDRIPCTLCDKTFTRKDSLKKHIRI 684 (843)
Q Consensus 659 ~~~~~~C~~C~~~f~~~~~L~~H~~~ 684 (843)
+.+..+|++|...|. ...-.+|+..
T Consensus 127 ~~DYiQcpYC~RrFN-a~AAeRHinF 151 (351)
T KOG3940|consen 127 TLDYNQCPYCTRRFN-AQAAERHINF 151 (351)
T ss_pred Chhhhccchhhhccc-hhhhhhcccc
Confidence 445678999999999 8888999864
No 148
>KOG2071|consensus
Probab=32.25 E-value=32 Score=36.99 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=20.6
Q ss_pred CCceeccccchhcCChhhHHHHHHHcc
Q psy8169 301 DNQIQCRFCNKYFSRNYNLKQHMKTCT 327 (843)
Q Consensus 301 ~~~~~C~~C~~~f~~~~~L~~H~~~h~ 327 (843)
..+-+|..||.+|........||..|.
T Consensus 416 ~~pnqC~~CG~R~~~~ee~sk~md~H~ 442 (579)
T KOG2071|consen 416 DSPNQCKSCGLRFDDSEERSKHMDIHD 442 (579)
T ss_pred CCcchhcccccccccchhhhhHhhhhh
Confidence 445678888888888888777777664
No 149
>KOG4167|consensus
Probab=31.75 E-value=32 Score=37.72 Aligned_cols=26 Identities=27% Similarity=0.522 Sum_probs=24.0
Q ss_pred hhhchhhhhhhhhhhHHHHHhHhhcc
Q psy8169 775 ILCKICNRTFTRNYNLKKHMKTVHKI 800 (843)
Q Consensus 775 ~~C~~C~~~F~~~~~L~~H~~~~H~~ 800 (843)
|.|..|++.|..-..+..||++|-.-
T Consensus 793 FpCreC~kvF~KiKSrNAHMK~Hr~q 818 (907)
T KOG4167|consen 793 FPCRECGKVFFKIKSRNAHMKTHRQQ 818 (907)
T ss_pred eehHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999999999999998754
No 150
>KOG2807|consensus
Probab=31.63 E-value=53 Score=32.14 Aligned_cols=21 Identities=14% Similarity=0.493 Sum_probs=14.5
Q ss_pred CccccCcccccccchhhHHHh
Q psy8169 211 NQLKCEFCGKVFLKKSNLKAH 231 (843)
Q Consensus 211 ~~~~C~~C~~~f~~~~~l~~H 231 (843)
-|-.|+.|+.+.....+|.+-
T Consensus 289 LP~eCpiC~ltLVss~hLARS 309 (378)
T KOG2807|consen 289 LPIECPICSLTLVSSPHLARS 309 (378)
T ss_pred CCccCCccceeEecchHHHHH
Confidence 356788888777777666653
No 151
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=31.58 E-value=8 Score=42.28 Aligned_cols=28 Identities=25% Similarity=0.649 Sum_probs=17.1
Q ss_pred cCCcchhccCChhHHHHhHhhhcCCCCccccccccc
Q psy8169 126 ECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCS 161 (843)
Q Consensus 126 ~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~C~ 161 (843)
.|+.|.+.+.+..+-+-|.+ +..|+.|+
T Consensus 153 lC~~C~~EY~dP~nRRfHAQ--------p~aCp~CG 180 (750)
T COG0068 153 LCPFCDKEYKDPLNRRFHAQ--------PIACPKCG 180 (750)
T ss_pred CCHHHHHHhcCccccccccc--------cccCcccC
Confidence 37777777666665555533 45666666
No 152
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=31.17 E-value=19 Score=19.91 Aligned_cols=11 Identities=18% Similarity=0.407 Sum_probs=8.4
Q ss_pred ccchhhchhhh
Q psy8169 772 TNEILCKICNR 782 (843)
Q Consensus 772 ~~~~~C~~C~~ 782 (843)
...|.|+-||+
T Consensus 14 ~v~f~CPnCG~ 24 (24)
T PF07754_consen 14 AVPFPCPNCGF 24 (24)
T ss_pred CceEeCCCCCC
Confidence 34599999985
No 153
>KOG4118|consensus
Probab=31.02 E-value=36 Score=23.93 Aligned_cols=31 Identities=16% Similarity=0.348 Sum_probs=27.6
Q ss_pred hhhchhhhhhhhhhhHHHHHhHhhccCCCCc
Q psy8169 775 ILCKICNRTFTRNYNLKKHMKTVHKIDDNEP 805 (843)
Q Consensus 775 ~~C~~C~~~F~~~~~L~~H~~~~H~~~~~~~ 805 (843)
|+|.+|-........+..|....|...+.++
T Consensus 39 ~kCtVC~~~mpdpktfkqhfe~kHpk~~~P~ 69 (74)
T KOG4118|consen 39 HKCTVCMVQMPDPKTFKQHFENKHPKEPLPE 69 (74)
T ss_pred hhhHhhHhhCCCCchHHHHHhhcCCCCCCCH
Confidence 8899999999999999999999999765554
No 154
>KOG3408|consensus
Probab=30.78 E-value=33 Score=27.93 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=16.5
Q ss_pred CCCccccccchhhcCCHHHHHHHHh
Q psy8169 14 YVENHMCELCYKVFESRENLMRHLK 38 (843)
Q Consensus 14 ~~~~~~C~~C~~~f~~~~~l~~H~~ 38 (843)
|...|-|-.|.+-|.+...|..|.+
T Consensus 54 G~GqfyCi~CaRyFi~~~~l~~H~k 78 (129)
T KOG3408|consen 54 GGGQFYCIECARYFIDAKALKTHFK 78 (129)
T ss_pred CCceeehhhhhhhhcchHHHHHHHh
Confidence 3344667777777777777777764
No 155
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=30.56 E-value=19 Score=27.40 Aligned_cols=28 Identities=21% Similarity=0.596 Sum_probs=18.2
Q ss_pred CcccccccccccCCHHHHHHhHHhhccCCCceeCCCCCC
Q psy8169 46 KRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGK 84 (843)
Q Consensus 46 ~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~ 84 (843)
.|-+|..||+.|... . -.+|-+|+.|..
T Consensus 57 ~Pa~CkkCGfef~~~--------~---ik~pSRCP~CKS 84 (97)
T COG3357 57 RPARCKKCGFEFRDD--------K---IKKPSRCPKCKS 84 (97)
T ss_pred cChhhcccCcccccc--------c---cCCcccCCcchh
Confidence 356788888888761 1 145677888753
No 156
>smart00440 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding motif in transcriptional elongation factor TFIIS and RNA polymerases.
Probab=30.09 E-value=12 Score=23.80 Aligned_cols=11 Identities=18% Similarity=0.667 Sum_probs=8.2
Q ss_pred ccccchhhhhh
Q psy8169 713 IRCELCDKSFT 723 (843)
Q Consensus 713 ~~C~~C~~~f~ 723 (843)
|.|..|+..|.
T Consensus 29 y~C~~C~~~w~ 39 (40)
T smart00440 29 YVCTKCGHRWR 39 (40)
T ss_pred EEeCCCCCEeC
Confidence 78888887653
No 157
>PRK04023 DNA polymerase II large subunit; Validated
Probab=29.88 E-value=42 Score=38.73 Aligned_cols=36 Identities=22% Similarity=0.495 Sum_probs=23.1
Q ss_pred CCccccccchhhcCCHHHHHHHHhhccCCCCCcccccccccccCCHHHHHHhHHhhccCCCceeCCCCCC
Q psy8169 15 VENHMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGK 84 (843)
Q Consensus 15 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~ 84 (843)
.....|+.||... -.+.|+.||.. ....+.|+.|+.
T Consensus 624 Vg~RfCpsCG~~t------------------~~frCP~CG~~----------------Te~i~fCP~CG~ 659 (1121)
T PRK04023 624 IGRRKCPSCGKET------------------FYRRCPFCGTH----------------TEPVYRCPRCGI 659 (1121)
T ss_pred ccCccCCCCCCcC------------------CcccCCCCCCC----------------CCcceeCccccC
Confidence 3456788888772 12678888765 234567777754
No 158
>KOG3408|consensus
Probab=29.34 E-value=35 Score=27.74 Aligned_cols=26 Identities=27% Similarity=0.621 Sum_probs=17.3
Q ss_pred CCcccccccccccccCHHHHHHHHhh
Q psy8169 151 DGMKFECYVCSKVLATSHSLKRHLLI 176 (843)
Q Consensus 151 ~~~~~~C~~C~~~f~~~~~l~~H~~~ 176 (843)
+.-.|-|-.|.+.|.+...|..|.++
T Consensus 54 G~GqfyCi~CaRyFi~~~~l~~H~kt 79 (129)
T KOG3408|consen 54 GGGQFYCIECARYFIDAKALKTHFKT 79 (129)
T ss_pred CCceeehhhhhhhhcchHHHHHHHhc
Confidence 34456677777777777777777653
No 159
>PRK04023 DNA polymerase II large subunit; Validated
Probab=28.39 E-value=43 Score=38.64 Aligned_cols=10 Identities=30% Similarity=0.946 Sum_probs=6.1
Q ss_pred CCCccccccc
Q psy8169 663 IPCTLCDKTF 672 (843)
Q Consensus 663 ~~C~~C~~~f 672 (843)
|+|..||..|
T Consensus 1038 fRC~kC~~kY 1047 (1121)
T PRK04023 1038 FRCTKCGAKY 1047 (1121)
T ss_pred eeecccCccc
Confidence 5666666655
No 160
>PF01780 Ribosomal_L37ae: Ribosomal L37ae protein family; InterPro: IPR002674 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This ribosomal protein is found in archaebacteria and eukaryotes []. Ribosomal protein L37 has a single zinc finger-like motif of the C2-C2 type [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1E_Y 4A17_Y 4A1C_Y 4A1A_Y 3O58_g 3IZS_m 3O5H_g 1S1I_9 3IZR_m 1YSH_D ....
Probab=28.10 E-value=19 Score=27.84 Aligned_cols=12 Identities=42% Similarity=1.201 Sum_probs=7.5
Q ss_pred cccCCcchhccC
Q psy8169 124 LHECDLCGKNFS 135 (843)
Q Consensus 124 ~~~C~~C~~~f~ 135 (843)
.+.|..|++.|.
T Consensus 53 IW~C~~C~~~~A 64 (90)
T PF01780_consen 53 IWKCKKCGKKFA 64 (90)
T ss_dssp EEEETTTTEEEE
T ss_pred EeecCCCCCEEe
Confidence 466777766654
No 161
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=28.07 E-value=29 Score=18.95 Aligned_cols=6 Identities=50% Similarity=1.442 Sum_probs=3.1
Q ss_pred CCcchh
Q psy8169 127 CDLCGK 132 (843)
Q Consensus 127 C~~C~~ 132 (843)
|+.||.
T Consensus 16 C~~CG~ 21 (23)
T PF13240_consen 16 CPNCGT 21 (23)
T ss_pred hhhhCC
Confidence 555553
No 162
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=27.86 E-value=26 Score=20.67 Aligned_cols=12 Identities=25% Similarity=0.684 Sum_probs=5.9
Q ss_pred CCCceeccccch
Q psy8169 300 DDNQIQCRFCNK 311 (843)
Q Consensus 300 ~~~~~~C~~C~~ 311 (843)
+...|.|+.|+.
T Consensus 16 D~~~~vCp~C~~ 27 (30)
T PF08274_consen 16 DGELLVCPECGH 27 (30)
T ss_dssp -SSSEEETTTTE
T ss_pred cCCEEeCCcccc
Confidence 334555666553
No 163
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=27.49 E-value=50 Score=27.58 Aligned_cols=55 Identities=22% Similarity=0.489 Sum_probs=31.2
Q ss_pred CCccccccchhhcCCHHHHHHHHhhccCCCCCcccc---cccccccCCHHHHHHhHHhhccCCCceeCCCCCCcccchh
Q psy8169 15 VENHMCELCYKVFESRENLMRHLKIHDDKESKRFKC---EQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRN 90 (843)
Q Consensus 15 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C---~~C~~~f~~~~~l~~H~~~~h~~~~~~~C~~C~~~f~~~~ 90 (843)
...|.|.+|..+.....-| ||-.| .+|+.-+ ..|..|- +.|. +||.|.-+|.+..
T Consensus 78 ~~lYeCnIC~etS~ee~FL------------KPneCCgY~iCn~Cy---a~LWK~~-~~yp-----vCPvCkTSFKss~ 135 (140)
T PF05290_consen 78 PKLYECNICKETSAEERFL------------KPNECCGYSICNACY---ANLWKFC-NLYP-----VCPVCKTSFKSSS 135 (140)
T ss_pred CCceeccCcccccchhhcC------------CcccccchHHHHHHH---HHHHHHc-ccCC-----CCCcccccccccc
Confidence 3567777776665433222 33333 1343333 3566664 4443 7999999998754
No 164
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A.
Probab=27.21 E-value=28 Score=24.54 Aligned_cols=40 Identities=18% Similarity=0.534 Sum_probs=25.5
Q ss_pred eeecCc--ChhccCChHHHHHHHHHhcCCCceeccc----cchhcCC
Q psy8169 275 YLTCLI--CFKTFLTEVDLGKHMKMHMDDNQIQCRF----CNKYFSR 315 (843)
Q Consensus 275 ~~~C~~--C~~~f~~~~~L~~H~~~H~~~~~~~C~~----C~~~f~~ 315 (843)
...|+. |...+ ....|..|+...-..++..|++ |+..+..
T Consensus 9 ~v~C~~~cc~~~i-~r~~l~~H~~~~C~~~~v~C~~~~~GC~~~~~~ 54 (60)
T PF02176_consen 9 PVPCPNGCCNEMI-PRKELDDHLENECPKRPVPCPYSPYGCKERVPR 54 (60)
T ss_dssp EEE-TT--S-BEE-ECCCHHHHHHTTSTTSEEE-SS----S--EEEH
T ss_pred EeeCCCCCcccce-eHHHHHHHHHccCCCCcEECCCCCCCCCCccch
Confidence 467887 44434 4668889998777778888999 8877653
No 165
>PF13878 zf-C2H2_3: zinc-finger of acetyl-transferase ESCO
Probab=26.57 E-value=40 Score=21.65 Aligned_cols=22 Identities=32% Similarity=0.674 Sum_probs=10.3
Q ss_pred cccchhHhhc--CHHHHHHHHhhc
Q psy8169 183 TCEICAKEFT--RVYELNIHKKLH 204 (843)
Q Consensus 183 ~C~~C~~~f~--~~~~L~~H~~~h 204 (843)
.|+.|+..|. ....-..|.+.|
T Consensus 15 ~C~~CgM~Y~~~~~eD~~~H~~yH 38 (41)
T PF13878_consen 15 TCPTCGMLYSPGSPEDEKLHKKYH 38 (41)
T ss_pred CCCCCCCEECCCCHHHHHHHHHHH
Confidence 4555554443 344444454444
No 166
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=25.43 E-value=32 Score=22.77 Aligned_cols=9 Identities=33% Similarity=0.855 Sum_probs=7.5
Q ss_pred CCCcccccc
Q psy8169 663 IPCTLCDKT 671 (843)
Q Consensus 663 ~~C~~C~~~ 671 (843)
+.|+.||..
T Consensus 19 ~~CP~Cg~~ 27 (46)
T PF12760_consen 19 FVCPHCGST 27 (46)
T ss_pred CCCCCCCCe
Confidence 679999975
No 167
>COG1594 RPB9 DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]
Probab=25.19 E-value=12 Score=30.75 Aligned_cols=14 Identities=14% Similarity=0.413 Sum_probs=12.0
Q ss_pred CCCccccccccchh
Q psy8169 663 IPCTLCDKTFTRKD 676 (843)
Q Consensus 663 ~~C~~C~~~f~~~~ 676 (843)
+.|..||+.+....
T Consensus 23 l~C~kCgye~~~~~ 36 (113)
T COG1594 23 LVCRKCGYEEEASN 36 (113)
T ss_pred EECCCCCcchhccc
Confidence 89999999987664
No 168
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.
Probab=24.89 E-value=42 Score=29.04 Aligned_cols=23 Identities=22% Similarity=0.546 Sum_probs=13.3
Q ss_pred Cccccccccccccc------CHHHHHHHH
Q psy8169 152 GMKFECYVCSKVLA------TSHSLKRHL 174 (843)
Q Consensus 152 ~~~~~C~~C~~~f~------~~~~l~~H~ 174 (843)
....+|..|++-|= +.+++..|+
T Consensus 12 ~~vv~C~~c~kWFCNg~~~~s~SHIv~HL 40 (152)
T PF09416_consen 12 SCVVKCNTCNKWFCNGRGNTSGSHIVNHL 40 (152)
T ss_dssp CCEEEETTTTEEEES--TTSSS-HHHHHH
T ss_pred ccEeEcCCCCcEeecCCCCCcccHHHHHH
Confidence 34567777777662 345566665
No 169
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=24.69 E-value=43 Score=27.84 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=19.1
Q ss_pred ccccccchhhcCCHHHHHHHHhhccC
Q psy8169 17 NHMCELCYKVFESRENLMRHLKIHDD 42 (843)
Q Consensus 17 ~~~C~~C~~~f~~~~~l~~H~~~h~~ 42 (843)
-..|-++|+.|+ +|++|+.+|.+
T Consensus 76 ~IicLEDGkkfK---SLKRHL~t~~g 98 (148)
T COG4957 76 YIICLEDGKKFK---SLKRHLTTHYG 98 (148)
T ss_pred eEEEeccCcchH---HHHHHHhcccC
Confidence 468999999985 68899999876
No 170
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=24.62 E-value=63 Score=34.18 Aligned_cols=30 Identities=30% Similarity=0.413 Sum_probs=26.5
Q ss_pred ccccccccccCChHHHHHHHhhhccccCcc
Q psy8169 506 IQCRICSKTFTRKDSLRKHMRRFHIINDTN 535 (843)
Q Consensus 506 ~~C~~C~~~f~~~~~L~~H~~~~H~~~~~~ 535 (843)
+.|+.|.+.|.+...+..|+...|...-.+
T Consensus 58 WiCp~CskkF~d~~~~~~H~~~eH~~~l~P 87 (466)
T PF04780_consen 58 WICPRCSKKFSDAESCLSHMEQEHPAGLKP 87 (466)
T ss_pred eeCCcccceeCCHHHHHHHHHHhhhhhcCh
Confidence 689999999999999999999989876544
No 171
>KOG2636|consensus
Probab=24.57 E-value=47 Score=34.10 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=12.0
Q ss_pred CCccccccch-hhcCCHHHHHHHH
Q psy8169 15 VENHMCELCY-KVFESRENLMRHL 37 (843)
Q Consensus 15 ~~~~~C~~C~-~~f~~~~~l~~H~ 37 (843)
...|.|.||| +++.-+.+|.+|.
T Consensus 399 ~~ey~CEICGNy~Y~GrkaF~RHF 422 (497)
T KOG2636|consen 399 DIEYNCEICGNYVYKGRKAFDRHF 422 (497)
T ss_pred CcccceeeccCccccCcHHHHHHh
Confidence 3345555555 5555555555554
No 172
>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.
Probab=24.18 E-value=28 Score=20.06 Aligned_cols=20 Identities=40% Similarity=0.742 Sum_probs=13.5
Q ss_pred CCCccccccccchhhhhhhhh
Q psy8169 663 IPCTLCDKTFTRKDSLKKHIR 683 (843)
Q Consensus 663 ~~C~~C~~~f~~~~~L~~H~~ 683 (843)
|.|-.|++.| .....+.|..
T Consensus 1 ~sCiDC~~~F-~~~~y~~Ht~ 20 (28)
T PF08790_consen 1 FSCIDCSKDF-DGDSYKSHTS 20 (28)
T ss_dssp EEETTTTEEE-EGGGTTT---
T ss_pred CeeecCCCCc-CcCCcCCCCc
Confidence 4588899999 6677777764
No 173
>KOG2272|consensus
Probab=23.80 E-value=52 Score=30.65 Aligned_cols=15 Identities=33% Similarity=0.831 Sum_probs=9.3
Q ss_pred ccccCcccccccchh
Q psy8169 212 QLKCEFCGKVFLKKS 226 (843)
Q Consensus 212 ~~~C~~C~~~f~~~~ 226 (843)
-|+|.-|++...+.+
T Consensus 163 HFkCt~C~keL~sda 177 (332)
T KOG2272|consen 163 HFKCTTCGKELTSDA 177 (332)
T ss_pred ceecccccccccchh
Confidence 467777777655443
No 174
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=23.74 E-value=74 Score=30.77 Aligned_cols=70 Identities=21% Similarity=0.455 Sum_probs=43.8
Q ss_pred CCCccccccccchhhhhhhhhcccc-----------CC--CCCCccchhhcccccccccc-----cccccccchhhhhhh
Q psy8169 663 IPCTLCDKTFTRKDSLKKHIRIFHT-----------QN--QPQHTNVIEVALGARANAAF-----IDRIRCELCDKSFTR 724 (843)
Q Consensus 663 ~~C~~C~~~f~~~~~L~~H~~~~H~-----------~~--~p~~~~~~~~~~~~~~~~~~-----~~~~~C~~C~~~f~~ 724 (843)
..|+.|.........|.+-+. |. +. +..+|..|...|........ ..+|+|+.|...|-.
T Consensus 323 i~CP~Csl~LilsthLarSyh--hL~PLk~f~E~p~~~~~ks~~Cf~CQ~~fp~~~~~~~~~~~ss~rY~Ce~CK~~FC~ 400 (421)
T COG5151 323 ISCPICSLQLILSTHLARSYH--HLYPLKPFVEKPEGTNPKSTHCFVCQGPFPKPPVSPFDESTSSGRYQCELCKSTFCS 400 (421)
T ss_pred ccCcchhHHHHHHHHHHHHHH--hhccCcccccccCCCCCCCccceeccCCCCCCCCCcccccccccceechhhhhhhhh
Confidence 456767665554444444332 32 11 22347777766655444322 346999999999999
Q ss_pred HHHHhhhhhh
Q psy8169 725 KDSLKKHNRI 734 (843)
Q Consensus 725 ~~~L~~H~~~ 734 (843)
--....|...
T Consensus 401 dCdvfiHe~L 410 (421)
T COG5151 401 DCDVFIHETL 410 (421)
T ss_pred hhHHHHHHHH
Confidence 9899999776
No 175
>KOG1842|consensus
Probab=23.53 E-value=51 Score=33.87 Aligned_cols=31 Identities=19% Similarity=0.361 Sum_probs=27.8
Q ss_pred ccccccchhhhhhhHHHHhhhhhhhcCCCCC
Q psy8169 711 DRIRCELCDKSFTRKDSLKKHNRIFHGGADP 741 (843)
Q Consensus 711 ~~~~C~~C~~~f~~~~~L~~H~~~~H~~~~~ 741 (843)
..|-|++|..-|..-..|..|+-..|.+++.
T Consensus 14 egflCPiC~~dl~~~~~L~~H~d~eH~~ed~ 44 (505)
T KOG1842|consen 14 EGFLCPICLLDLPNLSALNDHLDVEHFEEDE 44 (505)
T ss_pred hcccCchHhhhhhhHHHHHHHHhhhccccch
Confidence 4599999999999999999999999987653
No 176
>KOG4124|consensus
Probab=23.41 E-value=42 Score=33.03 Aligned_cols=70 Identities=26% Similarity=0.449 Sum_probs=43.9
Q ss_pred CCCCcc--ccccccchhhhhhhhhccccCCCCCCccchhhcccccccccccccccccchhhhhhhHHHHhhhhhh
Q psy8169 662 RIPCTL--CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDSLKKHNRI 734 (843)
Q Consensus 662 ~~~C~~--C~~~f~~~~~L~~H~~~~H~~~~p~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~ 734 (843)
+|+|.+ |.+.+.+...|..|...-|.. |-..... .......+...-++|+|++|.+++..-..|.-|...
T Consensus 349 ~~~~~vp~~~~~~~n~ng~~~~~~~~h~s--~i~~~s~-~~~ph~~~~~~nk~~r~~i~~~~~k~~~~l~~~~~~ 420 (442)
T KOG4124|consen 349 PYKCPVPNCDKAYKNQNGLKYHKLHGHCS--PITTPTP-APIPHQGFVVENKPYRCEVCSKRYKNLNGLKYHRTH 420 (442)
T ss_pred CCCCCCCcchhhcccCcceeeccccCcCC--CCCCCCC-CCCCcceeeeccCcccChhhhhhhccCCCCCceeeh
Confidence 377855 999999999999998754432 2100000 001111123334679999999999887777777543
No 177
>COG1655 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.28 E-value=21 Score=32.81 Aligned_cols=13 Identities=31% Similarity=0.746 Sum_probs=6.7
Q ss_pred cccccccccccCH
Q psy8169 155 FECYVCSKVLATS 167 (843)
Q Consensus 155 ~~C~~C~~~f~~~ 167 (843)
+.|++|+..|...
T Consensus 20 ieCPvC~tkFkke 32 (267)
T COG1655 20 IECPVCNTKFKKE 32 (267)
T ss_pred eccCcccchhhhh
Confidence 4555555555443
No 178
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=23.15 E-value=33 Score=23.56 Aligned_cols=14 Identities=36% Similarity=1.042 Sum_probs=10.3
Q ss_pred eeCCCCCCcccchh
Q psy8169 77 HECDLCGKNFSQRN 90 (843)
Q Consensus 77 ~~C~~C~~~f~~~~ 90 (843)
-+|+.|++.|....
T Consensus 6 ~~C~~Cg~~~~~~d 19 (54)
T PF14446_consen 6 CKCPVCGKKFKDGD 19 (54)
T ss_pred ccChhhCCcccCCC
Confidence 47899998886543
No 179
>PTZ00255 60S ribosomal protein L37a; Provisional
Probab=23.09 E-value=31 Score=26.66 Aligned_cols=14 Identities=21% Similarity=0.553 Sum_probs=10.8
Q ss_pred CcccCCcchhccCC
Q psy8169 123 KLHECDLCGKNFSQ 136 (843)
Q Consensus 123 ~~~~C~~C~~~f~~ 136 (843)
..+.|..|++.|.-
T Consensus 53 GIW~C~~C~~~~AG 66 (90)
T PTZ00255 53 GIWRCKGCKKTVAG 66 (90)
T ss_pred EEEEcCCCCCEEeC
Confidence 46889999888754
No 180
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=23.04 E-value=63 Score=38.58 Aligned_cols=11 Identities=27% Similarity=0.703 Sum_probs=7.9
Q ss_pred ceeCCCCCCcc
Q psy8169 76 LHECDLCGKNF 86 (843)
Q Consensus 76 ~~~C~~C~~~f 86 (843)
+|.|+.||...
T Consensus 692 vy~CPsCGaev 702 (1337)
T PRK14714 692 VYVCPDCGAEV 702 (1337)
T ss_pred ceeCccCCCcc
Confidence 56888888753
No 181
>TIGR00280 L37a ribosomal protein L37a. This model finds eukaryotic ribosomal protein L37a and its archaeal orthologs. The nomeclature is tricky because eukaryotes have proteins called both L37 and L37a.
Probab=22.83 E-value=29 Score=26.88 Aligned_cols=14 Identities=29% Similarity=0.845 Sum_probs=10.6
Q ss_pred CcccCCcchhccCC
Q psy8169 123 KLHECDLCGKNFSQ 136 (843)
Q Consensus 123 ~~~~C~~C~~~f~~ 136 (843)
..+.|..|++.|.-
T Consensus 52 GIW~C~~C~~~~AG 65 (91)
T TIGR00280 52 GIWTCRKCGAKFAG 65 (91)
T ss_pred EEEEcCCCCCEEeC
Confidence 46889889887753
No 182
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=22.33 E-value=30 Score=23.44 Aligned_cols=11 Identities=18% Similarity=0.374 Sum_probs=9.0
Q ss_pred ccccchhhhhh
Q psy8169 713 IRCELCDKSFT 723 (843)
Q Consensus 713 ~~C~~C~~~f~ 723 (843)
|.|..||+.+-
T Consensus 38 ~~C~~Cgyt~~ 48 (50)
T PRK00432 38 WHCGKCGYTEF 48 (50)
T ss_pred EECCCcCCEEe
Confidence 89999998753
No 183
>KOG4727|consensus
Probab=21.90 E-value=50 Score=28.77 Aligned_cols=28 Identities=21% Similarity=0.408 Sum_probs=23.0
Q ss_pred CCCCCCCCCCccccccccchhhhhhhhh
Q psy8169 656 PVAPIDRIPCTLCDKTFTRKDSLKKHIR 683 (843)
Q Consensus 656 p~~~~~~~~C~~C~~~f~~~~~L~~H~~ 683 (843)
|......|-|.+|+-+|...-++..||.
T Consensus 69 p~sq~~GyyCdVCdcvvKDSinflDHiN 96 (193)
T KOG4727|consen 69 PRSQKGGYYCDVCDCVVKDSINFLDHIN 96 (193)
T ss_pred cccccCceeeeecceeehhhHHHHHHhc
Confidence 3334445999999999999999999985
No 184
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=21.72 E-value=56 Score=37.13 Aligned_cols=40 Identities=23% Similarity=0.554 Sum_probs=27.0
Q ss_pred ccCCcchhccCChhHHHHhHhhhcCCCCcccccccccccccCHHHHHHHHhhcCCCcccccchhHh
Q psy8169 125 HECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHNGPKYTCEICAKE 190 (843)
Q Consensus 125 ~~C~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~C~~C~~~ 190 (843)
++|+.|+.... .| .......|..|++.-. .+..|+.|+-.
T Consensus 445 ~~Cp~Cd~~lt-----------~H-~~~~~L~CH~Cg~~~~--------------~p~~Cp~Cgs~ 484 (730)
T COG1198 445 AECPNCDSPLT-----------LH-KATGQLRCHYCGYQEP--------------IPQSCPECGSE 484 (730)
T ss_pred ccCCCCCcceE-----------Ee-cCCCeeEeCCCCCCCC--------------CCCCCCCCCCC
Confidence 45888876632 33 3335678999998632 45789999854
No 185
>PF13821 DUF4187: Domain of unknown function (DUF4187)
Probab=21.53 E-value=99 Score=21.50 Aligned_cols=19 Identities=16% Similarity=0.555 Sum_probs=16.9
Q ss_pred ccccccccccCChHHHHHH
Q psy8169 506 IQCRICSKTFTRKDSLRKH 524 (843)
Q Consensus 506 ~~C~~C~~~f~~~~~L~~H 524 (843)
+-|-.||..|.+...|..+
T Consensus 28 ~YC~~Cg~~Y~d~~dL~~~ 46 (55)
T PF13821_consen 28 NYCFWCGTKYDDEEDLERN 46 (55)
T ss_pred ceeeeeCCccCCHHHHHhC
Confidence 6699999999999998766
No 186
>PF07503 zf-HYPF: HypF finger; InterPro: IPR011125 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Proteins of the HypF family are involved in the maturation and regulation of hydrogenase []. In the N terminus they appear to have two zinc finger domains that are similar to those found in the DnaJ chaperone []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A.
Probab=21.26 E-value=20 Score=22.03 Aligned_cols=19 Identities=21% Similarity=0.448 Sum_probs=10.5
Q ss_pred Cccccccccchhhhhhhhh
Q psy8169 665 CTLCDKTFTRKDSLKKHIR 683 (843)
Q Consensus 665 C~~C~~~f~~~~~L~~H~~ 683 (843)
|+.|.+.+.+..+-+.|..
T Consensus 2 C~~C~~Ey~~p~~RR~~~~ 20 (35)
T PF07503_consen 2 CDDCLKEYFDPSNRRFHYQ 20 (35)
T ss_dssp -HHHHHHHCSTTSTTTT-T
T ss_pred CHHHHHHHcCCCCCcccCc
Confidence 6667776666666555543
No 187
>PF04780 DUF629: Protein of unknown function (DUF629); InterPro: IPR006865 This domain represents a region of several plant proteins of unknown function. A C2H2 zinc finger is predicted in this region in some family members, but the spacing between the cysteine residues is not conserved throughout the family.
Probab=20.98 E-value=64 Score=34.15 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=25.3
Q ss_pred ceecccccccccChHHHHHHHHhhccCC
Q psy8169 446 IIQCHICLKTFAKKDSLKKHMKVFHTYI 473 (843)
Q Consensus 446 ~~~C~~C~~~f~~~~~L~~H~~~~H~~~ 473 (843)
-|.|+.|.+.|.+...+..|+...|.+.
T Consensus 57 FWiCp~CskkF~d~~~~~~H~~~eH~~~ 84 (466)
T PF04780_consen 57 FWICPRCSKKFSDAESCLSHMEQEHPAG 84 (466)
T ss_pred EeeCCcccceeCCHHHHHHHHHHhhhhh
Confidence 4789999999999999999999889764
No 188
>COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis]
Probab=20.90 E-value=40 Score=22.42 Aligned_cols=9 Identities=22% Similarity=0.637 Sum_probs=7.4
Q ss_pred ccccchhhh
Q psy8169 713 IRCELCDKS 721 (843)
Q Consensus 713 ~~C~~C~~~ 721 (843)
+.|..||++
T Consensus 38 ~~CGkCgyT 46 (51)
T COG1998 38 WACGKCGYT 46 (51)
T ss_pred eEeccccce
Confidence 789999875
No 189
>PRK05580 primosome assembly protein PriA; Validated
Probab=20.79 E-value=61 Score=37.11 Aligned_cols=15 Identities=27% Similarity=0.631 Sum_probs=10.5
Q ss_pred ccCCCceeCCCCCCc
Q psy8169 71 HQRLKLHECDLCGKN 85 (843)
Q Consensus 71 h~~~~~~~C~~C~~~ 85 (843)
|.......|..||+.
T Consensus 403 h~~~~~l~Ch~Cg~~ 417 (679)
T PRK05580 403 HRFQRRLRCHHCGYQ 417 (679)
T ss_pred ECCCCeEECCCCcCC
Confidence 445567788888865
No 190
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=20.26 E-value=54 Score=21.25 Aligned_cols=12 Identities=25% Similarity=0.443 Sum_probs=6.9
Q ss_pred CcccCCcchhcc
Q psy8169 123 KLHECDLCGKNF 134 (843)
Q Consensus 123 ~~~~C~~C~~~f 134 (843)
.-+.|+.||..-
T Consensus 18 g~~vC~~CG~Vl 29 (43)
T PF08271_consen 18 GELVCPNCGLVL 29 (43)
T ss_dssp TEEEETTT-BBE
T ss_pred CeEECCCCCCEe
Confidence 346788887643
No 191
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=20.13 E-value=38 Score=24.81 Aligned_cols=10 Identities=50% Similarity=1.169 Sum_probs=3.1
Q ss_pred cccccccccC
Q psy8169 49 KCEQCDKRFS 58 (843)
Q Consensus 49 ~C~~C~~~f~ 58 (843)
.|..|++.|.
T Consensus 11 ~C~~C~~~F~ 20 (69)
T PF01363_consen 11 NCMICGKKFS 20 (69)
T ss_dssp B-TTT--B-B
T ss_pred cCcCcCCcCC
Confidence 4555555553
No 192
>PF06220 zf-U1: U1 zinc finger; InterPro: IPR013085 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc finger motif found in several U1 small nuclear ribonucleoprotein C (U1-C) proteins. Some proteins contain multiple copies of this motif. The U1 small nuclear ribonucleoprotein (U1 snRNP) binds to the pre-mRNA 5' splice site at early stages of spliceosome assembly. Recruitment of U1 to a class of weak 5' splice site is promoted by binding of the protein TIA-1 to uridine-rich sequences immediately downstream from the 5' splice site. Binding of TIA-1 in the vicinity of a 5' splice site helps to stabilise U1 snRNP recruitment, at least in part, via a direct interaction with U1-C, thus providing one molecular mechanism for the function of this splicing regulator []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2VRD_A.
Probab=20.13 E-value=61 Score=20.43 Aligned_cols=22 Identities=36% Similarity=0.709 Sum_probs=9.6
Q ss_pred cccccchhhhhh-hH-HHHhhhhh
Q psy8169 712 RIRCELCDKSFT-RK-DSLKKHNR 733 (843)
Q Consensus 712 ~~~C~~C~~~f~-~~-~~L~~H~~ 733 (843)
+|-|++|+..|+ +. ..-+.|.+
T Consensus 3 ryyCdyC~~~~~~d~~~~Rk~H~~ 26 (38)
T PF06220_consen 3 RYYCDYCKKYLTHDSPSIRKQHER 26 (38)
T ss_dssp S-B-TTT--B-S--SHHHHHHHT-
T ss_pred CeecccccceecCCChHHHHHhhc
Confidence 489999999994 33 33356643
Done!