BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy817
(854 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/287 (33%), Positives = 146/287 (50%), Gaps = 15/287 (5%)
Query: 155 LHLAAFNGSIKGC-SWLMLHGHDINFTKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHE-- 211
LH+AA G ++ + L TK +TPLH A V A+ L++ AH +
Sbjct: 117 LHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAG 176
Query: 212 ----TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILD-SG 266
T +H AV N +D V+LLL +P+ G +PLHIAA + + +++L G
Sbjct: 177 KNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG 236
Query: 267 MADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVEC 326
A+ + + VT LHLAA+ G+ E + +LL AN N N PLHL A+ V
Sbjct: 237 SANAE---SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPV 293
Query: 327 MEMLLRKGSQVNASDCDNRTPLH-ASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHI 385
++L++ G V+A+ TPLH AS NI V + LL+ A+VNA+ GYSP+H
Sbjct: 294 ADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLV---KFLLQHQADVNAKTKLGYSPLHQ 350
Query: 386 AALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRK 432
AA + V L+ +GA + + G++ L+I R S++ V K
Sbjct: 351 AAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK 397
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/271 (28%), Positives = 123/271 (45%), Gaps = 44/271 (16%)
Query: 155 LHLAAFNGSIKGCSWLMLHGHDINFTK-DSYTPLHFAVLGNYVDCAKFLIKNKAHIH--- 210
LH+A+F G + L+ G N + TPLH A + + AK+L++NKA ++
Sbjct: 18 LHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA 77
Query: 211 ---ETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGM 267
+T +H A + V+LLL NPN+ G +PLHI
Sbjct: 78 KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHI------------------ 119
Query: 268 ADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECM 327
AA G+VE + LLE A+ K PLH+AAK V
Sbjct: 120 -----------------AAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVA 162
Query: 328 EMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAA 387
E+LL + + NA+ + TPLH ++ N L + +++LL G + ++ GY+P+HIAA
Sbjct: 163 ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDI--VKLLLPRGGSPHSPAWNGYTPLHIAA 220
Query: 388 LSELSQCVDCLIMHGADISSKTPSGSSALSI 418
+ L+ +G ++++ G + L +
Sbjct: 221 KQNQVEVARSLLQYGGSANAESVQGVTPLHL 251
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 78/143 (54%), Gaps = 2/143 (1%)
Query: 279 VTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVN 338
+T LH+A+ G++ ++ LL+ A+ N N K + PLH+AA+ E + LL+ ++VN
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74
Query: 339 ASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCL 398
A D++TPLH + I + +++LL+ AN N G++P+HIAA + V L
Sbjct: 75 AKAKDDQTPLHC--AARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 132
Query: 399 IMHGADISSKTPSGSSALSIIMR 421
+ A + T G + L + +
Sbjct: 133 LEKEASQACMTKKGFTPLHVAAK 155
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 107 bits (267), Expect = 2e-23, Method: Composition-based stats.
Identities = 57/151 (37%), Positives = 92/151 (60%), Gaps = 2/151 (1%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
AA G + +RIL+ N A+ N + + PLHLAA E +E+LL+ G+ VNA D D
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
Query: 345 RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGAD 404
TPLH + L + +E+LLK+GA+VNA+D +G +P+H+AA + V+ L+ HGAD
Sbjct: 81 WTPLHLAADNGHLEI--VEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGAD 138
Query: 405 ISSKTPSGSSALSIIMRNTPSSISSVRKKLD 435
++++ G +A I + N ++ + +KL+
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 83.2 bits (204), Expect = 5e-16, Method: Composition-based stats.
Identities = 51/125 (40%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 262 ILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKC 321
IL + ADV+ ++ T LHLAA G+ E + +LL++ A+ N R+ PLHLAA
Sbjct: 32 ILMANGADVNAH-DDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADN 90
Query: 322 QSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYS 381
+E +E+LL+ G+ VNA D TPLH + + L + +E+LLK GA+VNA+D FG +
Sbjct: 91 GHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEI--VEVLLKHGADVNAQDKFGKT 148
Query: 382 PIHIA 386
I+
Sbjct: 149 AFDIS 153
Score = 74.3 bits (181), Expect = 3e-13, Method: Composition-based stats.
Identities = 46/129 (35%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 224 DCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALH 283
D V++L++ + N +++G +PLH+AA G ++ +L G ADV+ + + T LH
Sbjct: 28 DEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHG-ADVNARDTDGW-TPLH 85
Query: 284 LAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCD 343
LAA+NG++E + +LL+ A+ N ++ PLHLAA +E +E+LL+ G+ VNA D
Sbjct: 86 LAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKF 145
Query: 344 NRTPLHASL 352
+T S+
Sbjct: 146 GKTAFDISI 154
Score = 67.4 bits (163), Expect = 3e-11, Method: Composition-based stats.
Identities = 43/130 (33%), Positives = 71/130 (54%), Gaps = 2/130 (1%)
Query: 318 AAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDI 377
AA+ + + +L+ G+ VNA D TPLH L+ I +E+LLK GA+VNARD
Sbjct: 21 AARAGQDDEVRILMANGADVNAHDDQGSTPLH--LAAWIGHPEIVEVLLKHGADVNARDT 78
Query: 378 FGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSS 437
G++P+H+AA + + V+ L+ +GAD++++ G + L + I V K +
Sbjct: 79 DGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGAD 138
Query: 438 ISLQDPEAST 447
++ QD T
Sbjct: 139 VNAQDKFGKT 148
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 42/135 (31%), Positives = 72/135 (53%), Gaps = 9/135 (6%)
Query: 170 LMLHGHDINFTKDS-YTPLHFAVLGNYVDCAKFLIKNKAHIHE------TIVHSAVSTNA 222
LM +G D+N D TPLH A + + + L+K+ A ++ T +H A
Sbjct: 33 LMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGH 92
Query: 223 VDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTAL 282
++ V++LL + N + G++PLH+AADRG + ++ +L G ADV+ + K + TA
Sbjct: 93 LEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHG-ADVNAQDKFGK-TAF 150
Query: 283 HLAAENGYVECLRIL 297
++ +NG + IL
Sbjct: 151 DISIDNGNEDLAEIL 165
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 103 bits (256), Expect = 6e-22, Method: Composition-based stats.
Identities = 54/134 (40%), Positives = 85/134 (63%), Gaps = 2/134 (1%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
AA G + +RIL+ N A+ N +H + PLH+AA +E +E+LLR G+ VNA D +
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNG 68
Query: 345 RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGAD 404
TPLH + S L + +E+LLK+GA+VNA+D G +P+++AA + V+ L+ HGAD
Sbjct: 69 TTPLHLAASLGHLEI--VEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGAD 126
Query: 405 ISSKTPSGSSALSI 418
++++ G +A I
Sbjct: 127 VNAQDKFGKTAFDI 140
Score = 79.0 bits (193), Expect = 1e-14, Method: Composition-based stats.
Identities = 44/107 (41%), Positives = 65/107 (60%), Gaps = 2/107 (1%)
Query: 280 TALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNA 339
T LH+AA G++E + +LL N A+ N + PLHLAA +E +E+LL+ G+ VNA
Sbjct: 37 TPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNA 96
Query: 340 SDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIA 386
D TPL+ + L + +E+LLK GA+VNA+D FG + I+
Sbjct: 97 KDATGITPLYLAAYWGHLEI--VEVLLKHGADVNAQDKFGKTAFDIS 141
Score = 70.1 bits (170), Expect = 5e-12, Method: Composition-based stats.
Identities = 44/129 (34%), Positives = 75/129 (58%), Gaps = 2/129 (1%)
Query: 224 DCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALH 283
D V++L++ + N ++ G +PLH+AA G + ++ +L +G ADV+ T LH
Sbjct: 16 DEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNG-ADVN-AVDTNGTTPLH 73
Query: 284 LAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCD 343
LAA G++E + +LL+ A+ N ++ PL+LAA +E +E+LL+ G+ VNA D
Sbjct: 74 LAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKF 133
Query: 344 NRTPLHASL 352
+T S+
Sbjct: 134 GKTAFDISI 142
Score = 63.2 bits (152), Expect = 7e-10, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 74/138 (53%), Gaps = 3/138 (2%)
Query: 318 AAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDI 377
AA+ + + +L+ G+ NA D RTPLH + + L + +E+LL+ GA+VNA D
Sbjct: 9 AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEI--VEVLLRNGADVNAVDT 66
Query: 378 FGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSS 437
G +P+H+AA + V+ L+ +GAD+++K +G + L + I V K +
Sbjct: 67 NGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGAD 126
Query: 438 ISLQDPEASTK-DIELKL 454
++ QD T DI + +
Sbjct: 127 VNAQDKFGKTAFDISIDI 144
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 65/118 (55%), Gaps = 8/118 (6%)
Query: 197 DCAKFLIKNKA------HIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIA 250
D + L+ N A H T +H A + ++ V++LL + N ++ G +PLH+A
Sbjct: 16 DEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLA 75
Query: 251 ADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERN 308
A G + ++ +L G ADV+ K +T L+LAA G++E + +LL++ A+ N ++
Sbjct: 76 ASLGHLEIVEVLLKYG-ADVNAK-DATGITPLYLAAYWGHLEIVEVLLKHGADVNAQD 131
Score = 33.1 bits (74), Expect = 0.59, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 11/116 (9%)
Query: 105 EPDEMATLFSKASQAEK-----TTALLWCVFVKREDLLDALHQLGADLSN-DKYGA--LH 156
+ DE+ L + + A T L V ++++ L + GAD++ D G LH
Sbjct: 14 QDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLH 73
Query: 157 LAAFNGSIKGCSWLMLHGHDINFTKDS--YTPLHFAVLGNYVDCAKFLIKNKAHIH 210
LAA G ++ L+ +G D+N KD+ TPL+ A +++ + L+K+ A ++
Sbjct: 74 LAASLGHLEIVEVLLKYGADVN-AKDATGITPLYLAAYWGHLEIVEVLLKHGADVN 128
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 102 bits (254), Expect = 8e-22, Method: Composition-based stats.
Identities = 56/149 (37%), Positives = 90/149 (60%), Gaps = 2/149 (1%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
AA G + +RIL+ N A+ N ++ PLHLAA+ +E +E+LL+ G+ VNA D D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 345 RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGAD 404
TPLH + + L + +E+LLK GA+VNA+D GY+P+H+AA + V+ L+ GAD
Sbjct: 69 YTPLHLAAREGHLEI--VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126
Query: 405 ISSKTPSGSSALSIIMRNTPSSISSVRKK 433
++++ G + + +R I+ V +K
Sbjct: 127 VNAQDKFGKTPFDLAIREGHEDIAEVLQK 155
Score = 95.9 bits (237), Expect = 9e-20, Method: Composition-based stats.
Identities = 54/125 (43%), Positives = 80/125 (64%), Gaps = 3/125 (2%)
Query: 262 ILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKC 321
IL + ADV+ K K+ T LHLAA G++E + +LL+ A+ N ++ PLHLAA+
Sbjct: 20 ILMANGADVNAKDKDG-YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 78
Query: 322 QSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYS 381
+E +E+LL+ G+ VNA D D TPLH + + L + +E+LLK GA+VNA+D FG +
Sbjct: 79 GHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEI--VEVLLKAGADVNAQDKFGKT 136
Query: 382 PIHIA 386
P +A
Sbjct: 137 PFDLA 141
Score = 84.0 bits (206), Expect = 4e-16, Method: Composition-based stats.
Identities = 47/129 (36%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 224 DCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALH 283
D V++L++ + N + G +PLH+AA G + ++ +L +G ADV+ K K+ T LH
Sbjct: 16 DEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDG-YTPLH 73
Query: 284 LAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCD 343
LAA G++E + +LL+ A+ N ++ PLHLAA+ +E +E+LL+ G+ VNA D
Sbjct: 74 LAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 133
Query: 344 NRTPLHASL 352
+TP ++
Sbjct: 134 GKTPFDLAI 142
Score = 76.6 bits (187), Expect = 5e-14, Method: Composition-based stats.
Identities = 45/130 (34%), Positives = 72/130 (55%), Gaps = 2/130 (1%)
Query: 318 AAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDI 377
AA+ + + +L+ G+ VNA D D TPLH + + L + +E+LLK GA+VNA+D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEI--VEVLLKAGADVNAKDK 66
Query: 378 FGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSS 437
GY+P+H+AA + V+ L+ GAD+++K G + L + R I V K +
Sbjct: 67 DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126
Query: 438 ISLQDPEAST 447
++ QD T
Sbjct: 127 VNAQDKFGKT 136
Score = 66.6 bits (161), Expect = 6e-11, Method: Composition-based stats.
Identities = 48/162 (29%), Positives = 78/162 (48%), Gaps = 30/162 (18%)
Query: 170 LMLHGHDINFT-KDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQL 228
LM +G D+N KD YTPLH A +++ + L+K A +
Sbjct: 21 LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV------------------- 61
Query: 229 LLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAEN 288
N + G +PLH+AA G + ++ +L +G ADV+ K K+ T LHLAA
Sbjct: 62 --------NAKDKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKD-GYTPLHLAARE 111
Query: 289 GYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEML 330
G++E + +LL+ A+ N ++ + P LA + + E+L
Sbjct: 112 GHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 33/169 (19%)
Query: 133 REDLLDALHQLGADLS---NDKYGALHLAAFNGSIKGCSWLMLHGHDINFT-KDSYTPLH 188
++D + L GAD++ D Y LHLAA G ++ L+ G D+N KD YTPLH
Sbjct: 14 QDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLH 73
Query: 189 FAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLH 248
A +++ + L+K A + N + G +PLH
Sbjct: 74 LAAREGHLEIVEVLLKAGADV---------------------------NAKDKDGYTPLH 106
Query: 249 IAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRIL 297
+AA G + ++ +L +G ADV+ + K + T LA G+ + +L
Sbjct: 107 LAAREGHLEIVEVLLKAG-ADVNAQDKFGK-TPFDLAIREGHEDIAEVL 153
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 102 bits (253), Expect = 1e-21, Method: Composition-based stats.
Identities = 56/149 (37%), Positives = 90/149 (60%), Gaps = 2/149 (1%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
AA G + +RIL+ N A+ N ++ PLHLAA+ +E +E+LL+ G+ VNA D D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 68
Query: 345 RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGAD 404
TPLH + + L + +E+LLK GA+VNA+D GY+P+H+AA + V+ L+ GAD
Sbjct: 69 YTPLHLAAREGHLEI--VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126
Query: 405 ISSKTPSGSSALSIIMRNTPSSISSVRKK 433
++++ G + + + N I+ V +K
Sbjct: 127 VNAQDKFGKTPFDLAIDNGNEDIAEVLQK 155
Score = 95.9 bits (237), Expect = 9e-20, Method: Composition-based stats.
Identities = 54/125 (43%), Positives = 80/125 (64%), Gaps = 3/125 (2%)
Query: 262 ILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKC 321
IL + ADV+ K K+ T LHLAA G++E + +LL+ A+ N ++ PLHLAA+
Sbjct: 20 ILMANGADVNAKDKDG-YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 78
Query: 322 QSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYS 381
+E +E+LL+ G+ VNA D D TPLH + + L + +E+LLK GA+VNA+D FG +
Sbjct: 79 GHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEI--VEVLLKAGADVNAQDKFGKT 136
Query: 382 PIHIA 386
P +A
Sbjct: 137 PFDLA 141
Score = 84.0 bits (206), Expect = 4e-16, Method: Composition-based stats.
Identities = 47/129 (36%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 224 DCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALH 283
D V++L++ + N + G +PLH+AA G + ++ +L +G ADV+ K K+ T LH
Sbjct: 16 DEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDG-YTPLH 73
Query: 284 LAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCD 343
LAA G++E + +LL+ A+ N ++ PLHLAA+ +E +E+LL+ G+ VNA D
Sbjct: 74 LAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 133
Query: 344 NRTPLHASL 352
+TP ++
Sbjct: 134 GKTPFDLAI 142
Score = 76.6 bits (187), Expect = 5e-14, Method: Composition-based stats.
Identities = 45/130 (34%), Positives = 72/130 (55%), Gaps = 2/130 (1%)
Query: 318 AAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDI 377
AA+ + + +L+ G+ VNA D D TPLH + + L + +E+LLK GA+VNA+D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEI--VEVLLKAGADVNAKDK 66
Query: 378 FGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSS 437
GY+P+H+AA + V+ L+ GAD+++K G + L + R I V K +
Sbjct: 67 DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126
Query: 438 ISLQDPEAST 447
++ QD T
Sbjct: 127 VNAQDKFGKT 136
Score = 66.2 bits (160), Expect = 6e-11, Method: Composition-based stats.
Identities = 48/162 (29%), Positives = 78/162 (48%), Gaps = 30/162 (18%)
Query: 170 LMLHGHDINFT-KDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQL 228
LM +G D+N KD YTPLH A +++ + L+K A +
Sbjct: 21 LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV------------------- 61
Query: 229 LLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAEN 288
N + G +PLH+AA G + ++ +L +G ADV+ K K+ T LHLAA
Sbjct: 62 --------NAKDKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKD-GYTPLHLAARE 111
Query: 289 GYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEML 330
G++E + +LL+ A+ N ++ + P LA + + E+L
Sbjct: 112 GHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 48/169 (28%), Positives = 77/169 (45%), Gaps = 33/169 (19%)
Query: 133 REDLLDALHQLGADLS---NDKYGALHLAAFNGSIKGCSWLMLHGHDINFT-KDSYTPLH 188
++D + L GAD++ D Y LHLAA G ++ L+ G D+N KD YTPLH
Sbjct: 14 QDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLH 73
Query: 189 FAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLH 248
A +++ + L+K A + N + G +PLH
Sbjct: 74 LAAREGHLEIVEVLLKAGADV---------------------------NAKDKDGYTPLH 106
Query: 249 IAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRIL 297
+AA G + ++ +L +G ADV+ + K + T LA +NG + +L
Sbjct: 107 LAAREGHLEIVEVLLKAG-ADVNAQDKFGK-TPFDLAIDNGNEDIAEVL 153
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 102 bits (253), Expect = 1e-21, Method: Composition-based stats.
Identities = 58/151 (38%), Positives = 91/151 (60%), Gaps = 2/151 (1%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
AA G + +RIL+ N A+ N +H PLHLAA +E +E+LL+ G+ VNA D
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLG 80
Query: 345 RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGAD 404
TPLH + + L V +E+LLK GA+VNA D G++P+H+AA + V+ L+ HGAD
Sbjct: 81 VTPLHLAADRGHLEV--VEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGAD 138
Query: 405 ISSKTPSGSSALSIIMRNTPSSISSVRKKLD 435
++++ G +A I + N ++ + +KL+
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 85.5 bits (210), Expect = 1e-16, Method: Composition-based stats.
Identities = 48/107 (44%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
Query: 280 TALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNA 339
T LHLAA G++E + +LL+N A+ N + PLHLAA +E +E+LL+ G+ VNA
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVNA 108
Query: 340 SDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIA 386
+D + TPLH L+ NI + +E+LLK GA+VNA+D FG + I+
Sbjct: 109 NDHNGFTPLH--LAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDIS 153
Score = 80.1 bits (196), Expect = 4e-15, Method: Composition-based stats.
Identities = 48/129 (37%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 224 DCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALH 283
D V++L++ + N ++ G +PLH+AA G + ++ +L +G ADV+ VT LH
Sbjct: 28 DEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNG-ADVN-ADDSLGVTPLH 85
Query: 284 LAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCD 343
LAA+ G++E + +LL+N A+ N +H PLHLAA +E +E+LL+ G+ VNA D
Sbjct: 86 LAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKF 145
Query: 344 NRTPLHASL 352
+T S+
Sbjct: 146 GKTAFDISI 154
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 42/130 (32%), Positives = 69/130 (53%), Gaps = 2/130 (1%)
Query: 318 AAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDI 377
AA+ + + +L+ G+ VNASD TPLH + L + +E+LLK GA+VNA D
Sbjct: 21 AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEI--VEVLLKNGADVNADDS 78
Query: 378 FGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSS 437
G +P+H+AA + V+ L+ +GAD+++ +G + L + I V K +
Sbjct: 79 LGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGAD 138
Query: 438 ISLQDPEAST 447
++ QD T
Sbjct: 139 VNAQDKFGKT 148
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 30/140 (21%)
Query: 170 LMLHGHDINFTKD-SYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQL 228
LM +G D+N + +TPLH A +++ + L+KN A + NA D +
Sbjct: 33 LMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADV-----------NADDSL-- 79
Query: 229 LLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAEN 288
GV+PLH+AADRG + ++ +L +G ADV+ T LHLAA
Sbjct: 80 --------------GVTPLHLAADRGHLEVVEVLLKNG-ADVN-ANDHNGFTPLHLAANI 123
Query: 289 GYVECLRILLENHANCNERN 308
G++E + +LL++ A+ N ++
Sbjct: 124 GHLEIVEVLLKHGADVNAQD 143
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 101 bits (252), Expect = 2e-21, Method: Composition-based stats.
Identities = 55/146 (37%), Positives = 89/146 (60%), Gaps = 2/146 (1%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
AA G + +RIL+ N A+ N ++ PLHLAA+ +E +E+LL+ G+ VNA D D
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDG 80
Query: 345 RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGAD 404
TPLH + + L + +E+LLK GA+VNA+D GY+P+H+AA + V+ L+ GAD
Sbjct: 81 YTPLHLAAREGHLEI--VEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 138
Query: 405 ISSKTPSGSSALSIIMRNTPSSISSV 430
++++ G +A I + N ++ +
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEI 164
Score = 92.4 bits (228), Expect = 1e-18, Method: Composition-based stats.
Identities = 53/125 (42%), Positives = 79/125 (63%), Gaps = 3/125 (2%)
Query: 262 ILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKC 321
IL + ADV+ K K+ T LHLAA G++E + +LL+ A+ N ++ PLHLAA+
Sbjct: 32 ILMANGADVNAKDKDG-YTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAARE 90
Query: 322 QSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYS 381
+E +E+LL+ G+ VNA D D TPLH + + L + +E+LLK GA+VNA+D FG +
Sbjct: 91 GHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEI--VEVLLKAGADVNAQDKFGKT 148
Query: 382 PIHIA 386
I+
Sbjct: 149 AFDIS 153
Score = 81.6 bits (200), Expect = 2e-15, Method: Composition-based stats.
Identities = 47/129 (36%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 224 DCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALH 283
D V++L++ + N + G +PLH+AA G + ++ +L +G ADV+ K K+ T LH
Sbjct: 28 DEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDG-YTPLH 85
Query: 284 LAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCD 343
LAA G++E + +LL+ A+ N ++ PLHLAA+ +E +E+LL+ G+ VNA D
Sbjct: 86 LAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 145
Query: 344 NRTPLHASL 352
+T S+
Sbjct: 146 GKTAFDISI 154
Score = 76.6 bits (187), Expect = 5e-14, Method: Composition-based stats.
Identities = 45/130 (34%), Positives = 72/130 (55%), Gaps = 2/130 (1%)
Query: 318 AAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDI 377
AA+ + + +L+ G+ VNA D D TPLH + + L + +E+LLK GA+VNA+D
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEI--VEVLLKAGADVNAKDK 78
Query: 378 FGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSS 437
GY+P+H+AA + V+ L+ GAD+++K G + L + R I V K +
Sbjct: 79 DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 138
Query: 438 ISLQDPEAST 447
++ QD T
Sbjct: 139 VNAQDKFGKT 148
Score = 62.4 bits (150), Expect = 1e-09, Method: Composition-based stats.
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 30/140 (21%)
Query: 170 LMLHGHDINFT-KDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQL 228
LM +G D+N KD YTPLH A +++ + L+K A +
Sbjct: 33 LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV------------------- 73
Query: 229 LLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAEN 288
N + G +PLH+AA G + ++ +L +G ADV+ K K+ T LHLAA
Sbjct: 74 --------NAKDKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKD-GYTPLHLAARE 123
Query: 289 GYVECLRILLENHANCNERN 308
G++E + +LL+ A+ N ++
Sbjct: 124 GHLEIVEVLLKAGADVNAQD 143
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 101 bits (251), Expect = 2e-21, Method: Composition-based stats.
Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 2/151 (1%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
AA G + +RIL+ N A+ N + PLHLAAK +E +E+LL+ G+ VNA D
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYG 80
Query: 345 RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGAD 404
TPLH + L + +E+LLK GA+VNA+D G++P+H+AA + V+ L+ +GAD
Sbjct: 81 ATPLHLAADNGHLEI--VEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGAD 138
Query: 405 ISSKTPSGSSALSIIMRNTPSSISSVRKKLD 435
++++ G +A I + N ++ + +KL+
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 84.3 bits (207), Expect = 3e-16, Method: Composition-based stats.
Identities = 45/107 (42%), Positives = 69/107 (64%), Gaps = 2/107 (1%)
Query: 280 TALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNA 339
T LHLAA+ G++E + +LL+ A+ N ++ PLHLAA +E +E+LL+ G+ VNA
Sbjct: 49 TPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNA 108
Query: 340 SDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIA 386
D + TPLH + L + +E+LLK+GA+VNA+D FG + I+
Sbjct: 109 KDYEGFTPLHLAAYDGHLEI--VEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 46/129 (35%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Query: 224 DCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALH 283
D V++L++ + N + G +PLH+AA G + ++ +L G ADV+ T LH
Sbjct: 28 DEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYG-ADVN-AWDNYGATPLH 85
Query: 284 LAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCD 343
LAA+NG++E + +LL++ A+ N ++++ PLHLAA +E +E+LL+ G+ VNA D
Sbjct: 86 LAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKF 145
Query: 344 NRTPLHASL 352
+T S+
Sbjct: 146 GKTAFDISI 154
Score = 73.2 bits (178), Expect = 6e-13, Method: Composition-based stats.
Identities = 43/130 (33%), Positives = 73/130 (56%), Gaps = 2/130 (1%)
Query: 318 AAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDI 377
AA+ + + +L+ G+ VNA+D TPLH + L + +E+LLK+GA+VNA D
Sbjct: 21 AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEI--VEVLLKYGADVNAWDN 78
Query: 378 FGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSS 437
+G +P+H+AA + + V+ L+ HGAD+++K G + L + + I V K +
Sbjct: 79 YGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGAD 138
Query: 438 ISLQDPEAST 447
++ QD T
Sbjct: 139 VNAQDKFGKT 148
Score = 63.5 bits (153), Expect = 5e-10, Method: Composition-based stats.
Identities = 40/118 (33%), Positives = 67/118 (56%), Gaps = 8/118 (6%)
Query: 197 DCAKFLIKNKAHIH------ETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIA 250
D + L+ N A ++ T +H A T ++ V++LL + N +N G +PLH+A
Sbjct: 28 DEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLA 87
Query: 251 ADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERN 308
AD G + ++ +L G ADV+ K E T LHLAA +G++E + +LL+ A+ N ++
Sbjct: 88 ADNGHLEIVEVLLKHG-ADVNAKDYE-GFTPLHLAAYDGHLEIVEVLLKYGADVNAQD 143
Score = 47.8 bits (112), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 49/81 (60%), Gaps = 6/81 (7%)
Query: 135 DLLDALHQLGADLSN-DKYGA--LHLAAFNGSIKGCSWLMLHGHDINFTKD--SYTPLHF 189
++++ L + GAD++ D YGA LHLAA NG ++ L+ HG D+N KD +TPLH
Sbjct: 61 EIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVN-AKDYEGFTPLHL 119
Query: 190 AVLGNYVDCAKFLIKNKAHIH 210
A +++ + L+K A ++
Sbjct: 120 AAYDGHLEIVEVLLKYGADVN 140
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 35/170 (20%)
Query: 133 REDLLDALHQLGADL-SNDKYG--ALHLAAFNGSIKGCSWLMLHGHDINFTKDSY--TPL 187
++D + L GAD+ + D G LHLAA G ++ L+ +G D+N D+Y TPL
Sbjct: 26 QDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVN-AWDNYGATPL 84
Query: 188 HFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPL 247
H A +++ + L+K+ A + N + +G +PL
Sbjct: 85 HLAADNGHLEIVEVLLKHGADV---------------------------NAKDYEGFTPL 117
Query: 248 HIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRIL 297
H+AA G + ++ +L G ADV+ + K + TA ++ +NG + IL
Sbjct: 118 HLAAYDGHLEIVEVLLKYG-ADVNAQDKFGK-TAFDISIDNGNEDLAEIL 165
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 100 bits (250), Expect = 3e-21, Method: Composition-based stats.
Identities = 56/151 (37%), Positives = 91/151 (60%), Gaps = 2/151 (1%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
AA G + +RIL+ N A+ N R+ PLHLAA +E +E+LL+ G+ VNA D
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLG 80
Query: 345 RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGAD 404
TPLH + + L + +E+LLK GA+VNA D G++P+H+AA + V+ L+ +GAD
Sbjct: 81 VTPLHLAARRGHLEI--VEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD 138
Query: 405 ISSKTPSGSSALSIIMRNTPSSISSVRKKLD 435
++++ G +A I + N ++ + +KL+
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 87.8 bits (216), Expect = 2e-17, Method: Composition-based stats.
Identities = 47/107 (43%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
Query: 280 TALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNA 339
T LHLAA G++E + +LL+N A+ N ++ PLHLAA+ +E +E+LL+ G+ VNA
Sbjct: 49 TPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVNA 108
Query: 340 SDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIA 386
SD TPLH + + L + +E+LLK GA+VNA+D FG + I+
Sbjct: 109 SDSHGFTPLHLAAKRGHLEI--VEVLLKNGADVNAQDKFGKTAFDIS 153
Score = 79.3 bits (194), Expect = 9e-15, Method: Composition-based stats.
Identities = 49/129 (37%), Positives = 77/129 (59%), Gaps = 2/129 (1%)
Query: 224 DCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALH 283
D V++L++ + N + G +PLH+AA G + ++ +L +G ADV+ K VT LH
Sbjct: 28 DEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNG-ADVNAK-DSLGVTPLH 85
Query: 284 LAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCD 343
LAA G++E + +LL+N A+ N + PLHLAAK +E +E+LL+ G+ VNA D
Sbjct: 86 LAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKF 145
Query: 344 NRTPLHASL 352
+T S+
Sbjct: 146 GKTAFDISI 154
Score = 65.9 bits (159), Expect = 9e-11, Method: Composition-based stats.
Identities = 41/130 (31%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
Query: 318 AAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDI 377
AA+ + + +L+ G+ VNA D TPLH L+ + + +E+LLK GA+VNA+D
Sbjct: 21 AARAGQDDEVRILMANGADVNARDFTGWTPLH--LAAHFGHLEIVEVLLKNGADVNAKDS 78
Query: 378 FGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSS 437
G +P+H+AA + V+ L+ +GAD+++ G + L + + I V K +
Sbjct: 79 LGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD 138
Query: 438 ISLQDPEAST 447
++ QD T
Sbjct: 139 VNAQDKFGKT 148
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 34/142 (23%)
Query: 170 LMLHGHDIN---FTKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCV 226
LM +G D+N FT +TPLH A +++ + L+KN A + NA D +
Sbjct: 33 LMANGADVNARDFT--GWTPLHLAAHFGHLEIVEVLLKNGADV-----------NAKDSL 79
Query: 227 QLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAA 286
GV+PLH+AA RG + ++ +L +G ADV+ + T LHLAA
Sbjct: 80 ----------------GVTPLHLAARRGHLEIVEVLLKNG-ADVN-ASDSHGFTPLHLAA 121
Query: 287 ENGYVECLRILLENHANCNERN 308
+ G++E + +LL+N A+ N ++
Sbjct: 122 KRGHLEIVEVLLKNGADVNAQD 143
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 48/170 (28%), Positives = 81/170 (47%), Gaps = 35/170 (20%)
Query: 133 REDLLDALHQLGADLSNDKYGA---LHLAAFNGSIKGCSWLMLHGHDINFTKDSY--TPL 187
++D + L GAD++ + LHLAA G ++ L+ +G D+N KDS TPL
Sbjct: 26 QDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVN-AKDSLGVTPL 84
Query: 188 HFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPL 247
H A +++ + L+KN A + N ++ G +PL
Sbjct: 85 HLAARRGHLEIVEVLLKNGADV---------------------------NASDSHGFTPL 117
Query: 248 HIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRIL 297
H+AA RG + ++ +L +G ADV+ + K + TA ++ +NG + IL
Sbjct: 118 HLAAKRGHLEIVEVLLKNG-ADVNAQDKFGK-TAFDISIDNGNEDLAEIL 165
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 100 bits (248), Expect = 4e-21, Method: Composition-based stats.
Identities = 53/146 (36%), Positives = 88/146 (60%), Gaps = 2/146 (1%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
AA G + +RIL+ N A+ N + PLHLAA+ +E +E+LL+ G+ VNA D
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG 80
Query: 345 RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGAD 404
TPLH + + L + +E+LLK+GA+VNA D G +P+H+AA + + V+ L+ +GAD
Sbjct: 81 STPLHLAAKRGHLEI--VEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGAD 138
Query: 405 ISSKTPSGSSALSIIMRNTPSSISSV 430
++++ G +A I + N ++ +
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEI 164
Score = 87.8 bits (216), Expect = 2e-17, Method: Composition-based stats.
Identities = 47/107 (43%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Query: 280 TALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNA 339
T LHLAA G++E + +LL+N A+ N + PLHLAAK +E +E+LL+ G+ VNA
Sbjct: 49 TPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNA 108
Query: 340 SDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIA 386
D TPLH + L + +E+LLK+GA+VNA+D FG + I+
Sbjct: 109 DDTIGSTPLHLAADTGHLEI--VEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 69.7 bits (169), Expect = 6e-12, Method: Composition-based stats.
Identities = 45/129 (34%), Positives = 74/129 (57%), Gaps = 2/129 (1%)
Query: 224 DCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALH 283
D V++L++ + N + G +PLH+AA G + ++ +L +G ADV+ T LH
Sbjct: 28 DEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNG-ADVN-ALDFSGSTPLH 85
Query: 284 LAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCD 343
LAA+ G++E + +LL+ A+ N + PLHLAA +E +E+LL+ G+ VNA D
Sbjct: 86 LAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKF 145
Query: 344 NRTPLHASL 352
+T S+
Sbjct: 146 GKTAFDISI 154
Score = 66.6 bits (161), Expect = 5e-11, Method: Composition-based stats.
Identities = 42/130 (32%), Positives = 69/130 (53%), Gaps = 2/130 (1%)
Query: 318 AAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDI 377
AA+ + + +L+ G+ VNA D TPLH L+ + + +E+LLK GA+VNA D
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDTYGDTPLH--LAARVGHLEIVEVLLKNGADVNALDF 78
Query: 378 FGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSS 437
G +P+H+AA + V+ L+ +GAD+++ GS+ L + I V K +
Sbjct: 79 SGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGAD 138
Query: 438 ISLQDPEAST 447
++ QD T
Sbjct: 139 VNAQDKFGKT 148
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 74/136 (54%), Gaps = 11/136 (8%)
Query: 170 LMLHGHDINFTKDSY--TPLHFAVLGNYVDCAKFLIKNKAHIH------ETIVHSAVSTN 221
LM +G D+N +D+Y TPLH A +++ + L+KN A ++ T +H A
Sbjct: 33 LMANGADVN-AEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRG 91
Query: 222 AVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTA 281
++ V++LL + N + G +PLH+AAD G + ++ +L G ADV+ + K + TA
Sbjct: 92 HLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYG-ADVNAQDKFGK-TA 149
Query: 282 LHLAAENGYVECLRIL 297
++ +NG + IL
Sbjct: 150 FDISIDNGNEDLAEIL 165
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 99.8 bits (247), Expect = 6e-21, Method: Composition-based stats.
Identities = 55/151 (36%), Positives = 93/151 (61%), Gaps = 2/151 (1%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
AA G + +RIL+ N A+ N + + PLHLAA +E +E+LL+ G+ VNA+D
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG 80
Query: 345 RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGAD 404
TPLH + L + +E+LLK GA+VNA D +G++P+H+AA + + V+ L+ +GAD
Sbjct: 81 DTPLHLAALYGHLEI--VEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD 138
Query: 405 ISSKTPSGSSALSIIMRNTPSSISSVRKKLD 435
++++ G +A I + N ++ + +KL+
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 84.7 bits (208), Expect = 2e-16, Method: Composition-based stats.
Identities = 50/125 (40%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
Query: 262 ILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKC 321
IL + ADV+ + + T LHLAA G++E + +LL++ A+ N + PLHLAA
Sbjct: 32 ILMANGADVNAEDDSGK-TPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALY 90
Query: 322 QSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYS 381
+E +E+LL+ G+ VNA+D TPLH + L + +E+LLK+GA+VNA+D FG +
Sbjct: 91 GHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEI--VEVLLKYGADVNAQDKFGKT 148
Query: 382 PIHIA 386
I+
Sbjct: 149 AFDIS 153
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 47/129 (36%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
Query: 224 DCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALH 283
D V++L++ + N ++ G +PLH+AA +G + ++ +L G ADV+ K T LH
Sbjct: 28 DEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHG-ADVNAADKMGD-TPLH 85
Query: 284 LAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCD 343
LAA G++E + +LL+N A+ N + PLHLAA +E +E+LL+ G+ VNA D
Sbjct: 86 LAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKF 145
Query: 344 NRTPLHASL 352
+T S+
Sbjct: 146 GKTAFDISI 154
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 43/130 (33%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
Query: 318 AAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDI 377
AA+ + + +L+ G+ VNA D +TPLH + K L + +E+LLK GA+VNA D
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEI--VEVLLKHGADVNAADK 78
Query: 378 FGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSS 437
G +P+H+AAL + V+ L+ +GAD+++ G + L + I V K +
Sbjct: 79 MGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD 138
Query: 438 ISLQDPEAST 447
++ QD T
Sbjct: 139 VNAQDKFGKT 148
Score = 60.5 bits (145), Expect = 4e-09, Method: Composition-based stats.
Identities = 42/135 (31%), Positives = 74/135 (54%), Gaps = 9/135 (6%)
Query: 170 LMLHGHDINFTKDS-YTPLHFAVLGNYVDCAKFLIKNKAHIH------ETIVHSAVSTNA 222
LM +G D+N DS TPLH A + +++ + L+K+ A ++ +T +H A
Sbjct: 33 LMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGH 92
Query: 223 VDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTAL 282
++ V++LL + N + G +PLH+AAD G + ++ +L G ADV+ + K + TA
Sbjct: 93 LEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYG-ADVNAQDKFGK-TAF 150
Query: 283 HLAAENGYVECLRIL 297
++ +NG + IL
Sbjct: 151 DISIDNGNEDLAEIL 165
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 99.8 bits (247), Expect = 6e-21, Method: Composition-based stats.
Identities = 57/151 (37%), Positives = 91/151 (60%), Gaps = 2/151 (1%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
AA G + +RIL+ N A+ N + PLHLAA +E +E+LL+ G+ VNA D
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXG 80
Query: 345 RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGAD 404
TPLH L+ I + +E+LLK GA+VNA D +G +P+H+AA+ + V+ L+ HGAD
Sbjct: 81 STPLH--LAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138
Query: 405 ISSKTPSGSSALSIIMRNTPSSISSVRKKLD 435
++++ G +A I + N ++ + +KL+
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 80.1 bits (196), Expect = 4e-15, Method: Composition-based stats.
Identities = 51/125 (40%), Positives = 75/125 (60%), Gaps = 3/125 (2%)
Query: 262 ILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKC 321
IL + ADV+ T +T LHLAA G++E + +LL++ A+ N + PLHLAA
Sbjct: 32 ILMANGADVN-ATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALI 90
Query: 322 QSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYS 381
+E +E+LL+ G+ VNA D TPLH + L + +E+LLK GA+VNA+D FG +
Sbjct: 91 GHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEI--VEVLLKHGADVNAQDKFGKT 148
Query: 382 PIHIA 386
I+
Sbjct: 149 AFDIS 153
Score = 70.1 bits (170), Expect = 5e-12, Method: Composition-based stats.
Identities = 44/130 (33%), Positives = 71/130 (54%), Gaps = 2/130 (1%)
Query: 318 AAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDI 377
AA+ + + +L+ G+ VNA+D TPLH + + L + +E+LLK GA+VNA DI
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEI--VEVLLKHGADVNAIDI 78
Query: 378 FGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSS 437
G +P+H+AAL + V+ L+ HGAD+++ G + L + I V K +
Sbjct: 79 XGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138
Query: 438 ISLQDPEAST 447
++ QD T
Sbjct: 139 VNAQDKFGKT 148
Score = 68.9 bits (167), Expect = 1e-11, Method: Composition-based stats.
Identities = 47/132 (35%), Positives = 75/132 (56%), Gaps = 8/132 (6%)
Query: 224 DCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADV---DIKTKERRVT 280
D V++L++ + N + G++PLH+AA G + ++ +L G ADV DI T
Sbjct: 28 DEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHG-ADVNAIDIXGS----T 82
Query: 281 ALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNAS 340
LHLAA G++E + +LL++ A+ N + PLHLAA +E +E+LL+ G+ VNA
Sbjct: 83 PLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQ 142
Query: 341 DCDNRTPLHASL 352
D +T S+
Sbjct: 143 DKFGKTAFDISI 154
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 30/140 (21%)
Query: 170 LMLHGHDINFTKDS-YTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQL 228
LM +G D+N T S TPLH A +++ + L+K+ A + NA+D
Sbjct: 33 LMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADV-----------NAIDIX-- 79
Query: 229 LLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAEN 288
G +PLH+AA G + ++ +L G ADV+ T LHLAA
Sbjct: 80 --------------GSTPLHLAALIGHLEIVEVLLKHG-ADVN-AVDTWGDTPLHLAAIM 123
Query: 289 GYVECLRILLENHANCNERN 308
G++E + +LL++ A+ N ++
Sbjct: 124 GHLEIVEVLLKHGADVNAQD 143
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 33/169 (19%)
Query: 133 REDLLDALHQLGADL-SNDKYG--ALHLAAFNGSIKGCSWLMLHGHDINFTK-DSYTPLH 188
++D + L GAD+ + D G LHLAA G ++ L+ HG D+N TPLH
Sbjct: 26 QDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLH 85
Query: 189 FAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLH 248
A L +++ + L+K+ A + NAVD G +PLH
Sbjct: 86 LAALIGHLEIVEVLLKHGADV-----------NAVD----------------TWGDTPLH 118
Query: 249 IAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRIL 297
+AA G + ++ +L G ADV+ + K + TA ++ +NG + IL
Sbjct: 119 LAAIMGHLEIVEVLLKHG-ADVNAQDKFGK-TAFDISIDNGNEDLAEIL 165
Score = 29.6 bits (65), Expect = 7.9, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 122 TTALLWCVFVKREDLLDALHQLGADLSN-DKYG--ALHLAAFNGSIKGCSWLMLHGHDIN 178
+T L + ++++ L + GAD++ D +G LHLAA G ++ L+ HG D+N
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 179 FTKDSYTPLHFAV 191
+D + F +
Sbjct: 141 -AQDKFGKTAFDI 152
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 99.4 bits (246), Expect = 7e-21, Method: Composition-based stats.
Identities = 56/146 (38%), Positives = 87/146 (59%), Gaps = 2/146 (1%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
AA G + +RIL+ N A+ N + PLHLAA +E +E+LL+ G+ VNASD
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG 72
Query: 345 RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGAD 404
TPLH + L + +E+LLK GA+VNA D G++P+H+AALS + V+ L+ HGAD
Sbjct: 73 ITPLHLAAYDGHLEI--VEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGAD 130
Query: 405 ISSKTPSGSSALSIIMRNTPSSISSV 430
++++ G +A I + ++ +
Sbjct: 131 VNAQDALGLTAFDISINQGQEDLAEI 156
Score = 84.3 bits (207), Expect = 2e-16, Method: Composition-based stats.
Identities = 52/125 (41%), Positives = 75/125 (60%), Gaps = 3/125 (2%)
Query: 262 ILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKC 321
IL + ADV+ T + +T LHLAA NG +E + +LL+N A+ N + PLHLAA
Sbjct: 24 ILMANGADVN-ATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYD 82
Query: 322 QSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYS 381
+E +E+LL+ G+ VNA D TPLH + L + +E+LLK GA+VNA+D G +
Sbjct: 83 GHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEI--VEVLLKHGADVNAQDALGLT 140
Query: 382 PIHIA 386
I+
Sbjct: 141 AFDIS 145
Score = 79.3 bits (194), Expect = 8e-15, Method: Composition-based stats.
Identities = 46/138 (33%), Positives = 82/138 (59%), Gaps = 2/138 (1%)
Query: 217 AVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKE 276
A + D V++L++ + N ++ G++PLH+AA G + ++ +L +G ADV+ +
Sbjct: 13 AAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNG-ADVN-ASDS 70
Query: 277 RRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQ 336
+T LHLAA +G++E + +LL++ A+ N + PLHLAA +E +E+LL+ G+
Sbjct: 71 AGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGAD 130
Query: 337 VNASDCDNRTPLHASLSK 354
VNA D T S+++
Sbjct: 131 VNAQDALGLTAFDISINQ 148
Score = 68.9 bits (167), Expect = 1e-11, Method: Composition-based stats.
Identities = 44/128 (34%), Positives = 72/128 (56%), Gaps = 3/128 (2%)
Query: 315 LHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNA 374
L AA Q E + +L+ G+ VNA+D + TPLH + + L + +E+LLK GA+VNA
Sbjct: 11 LEAAAAGQDDE-VRILMANGADVNATDDNGLTPLHLAAANGQLEI--VEVLLKNGADVNA 67
Query: 375 RDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKL 434
D G +P+H+AA + V+ L+ HGAD+++ +G + L + + I V K
Sbjct: 68 SDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKH 127
Query: 435 DSSISLQD 442
+ ++ QD
Sbjct: 128 GADVNAQD 135
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 68/141 (48%), Gaps = 32/141 (22%)
Query: 170 LMLHGHDINFTKDS-YTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQL 228
LM +G D+N T D+ TPLH A ++ + L+KN A +
Sbjct: 25 LMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADV------------------- 65
Query: 229 LLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERR-VTALHLAAE 287
N ++ G++PLH+AA G + ++ +L G D+ +R T LHLAA
Sbjct: 66 --------NASDSAGITPLHLAAYDGHLEIVEVLLKHG---ADVNAYDRAGWTPLHLAAL 114
Query: 288 NGYVECLRILLENHANCNERN 308
+G +E + +LL++ A+ N ++
Sbjct: 115 SGQLEIVEVLLKHGADVNAQD 135
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 50/80 (62%), Gaps = 4/80 (5%)
Query: 135 DLLDALHQLGADL-SNDKYG--ALHLAAFNGSIKGCSWLMLHGHDIN-FTKDSYTPLHFA 190
++++ L + GAD+ ++D G LHLAA++G ++ L+ HG D+N + + +TPLH A
Sbjct: 53 EIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLA 112
Query: 191 VLGNYVDCAKFLIKNKAHIH 210
L ++ + L+K+ A ++
Sbjct: 113 ALSGQLEIVEVLLKHGADVN 132
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 10/140 (7%)
Query: 125 LLWCVFVKREDLLDALHQLGADL-SNDKYG--ALHLAAFNGSIKGCSWLMLHGHDINFTK 181
LL ++D + L GAD+ + D G LHLAA NG ++ L+ +G D+N +
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD 69
Query: 182 DS-YTPLHFAVLGNYVDCAKFLIKNKAHIHE------TIVHSAVSTNAVDCVQLLLSLQI 234
+ TPLH A +++ + L+K+ A ++ T +H A + ++ V++LL
Sbjct: 70 SAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGA 129
Query: 235 NPNVLNNKGVSPLHIAADRG 254
+ N + G++ I+ ++G
Sbjct: 130 DVNAQDALGLTAFDISINQG 149
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 98.6 bits (244), Expect = 1e-20, Method: Composition-based stats.
Identities = 57/151 (37%), Positives = 91/151 (60%), Gaps = 2/151 (1%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
AA G + +RIL+ N A+ N + PLHLAA +E +E+LL+ G+ VNA D
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMG 80
Query: 345 RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGAD 404
TPLH L+ I + +E+LLK GA+VNA D +G +P+H+AA+ + V+ L+ HGAD
Sbjct: 81 STPLH--LAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138
Query: 405 ISSKTPSGSSALSIIMRNTPSSISSVRKKLD 435
++++ G +A I + N ++ + +KL+
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 80.1 bits (196), Expect = 5e-15, Method: Composition-based stats.
Identities = 51/125 (40%), Positives = 75/125 (60%), Gaps = 3/125 (2%)
Query: 262 ILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKC 321
IL + ADV+ T +T LHLAA G++E + +LL++ A+ N + PLHLAA
Sbjct: 32 ILMANGADVN-ATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALI 90
Query: 322 QSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYS 381
+E +E+LL+ G+ VNA D TPLH + L + +E+LLK GA+VNA+D FG +
Sbjct: 91 GHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEI--VEVLLKHGADVNAQDKFGKT 148
Query: 382 PIHIA 386
I+
Sbjct: 149 AFDIS 153
Score = 70.9 bits (172), Expect = 3e-12, Method: Composition-based stats.
Identities = 44/130 (33%), Positives = 71/130 (54%), Gaps = 2/130 (1%)
Query: 318 AAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDI 377
AA+ + + +L+ G+ VNA+D TPLH + + L + +E+LLK GA+VNA DI
Sbjct: 21 AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEI--VEVLLKHGADVNAIDI 78
Query: 378 FGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSS 437
G +P+H+AAL + V+ L+ HGAD+++ G + L + I V K +
Sbjct: 79 MGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138
Query: 438 ISLQDPEAST 447
++ QD T
Sbjct: 139 VNAQDKFGKT 148
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 47/132 (35%), Positives = 75/132 (56%), Gaps = 8/132 (6%)
Query: 224 DCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADV---DIKTKERRVT 280
D V++L++ + N + G++PLH+AA G + ++ +L G ADV DI T
Sbjct: 28 DEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHG-ADVNAIDIMGS----T 82
Query: 281 ALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNAS 340
LHLAA G++E + +LL++ A+ N + PLHLAA +E +E+LL+ G+ VNA
Sbjct: 83 PLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQ 142
Query: 341 DCDNRTPLHASL 352
D +T S+
Sbjct: 143 DKFGKTAFDISI 154
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/140 (30%), Positives = 69/140 (49%), Gaps = 30/140 (21%)
Query: 170 LMLHGHDINFTKDS-YTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQL 228
LM +G D+N T S TPLH A +++ + L+K+ A + NA+D +
Sbjct: 33 LMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADV-----------NAIDIM-- 79
Query: 229 LLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAEN 288
G +PLH+AA G + ++ +L G ADV+ T LHLAA
Sbjct: 80 --------------GSTPLHLAALIGHLEIVEVLLKHG-ADVN-AVDTWGDTPLHLAAIM 123
Query: 289 GYVECLRILLENHANCNERN 308
G++E + +LL++ A+ N ++
Sbjct: 124 GHLEIVEVLLKHGADVNAQD 143
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 33/169 (19%)
Query: 133 REDLLDALHQLGADL-SNDKYG--ALHLAAFNGSIKGCSWLMLHGHDINFTK-DSYTPLH 188
++D + L GAD+ + D G LHLAA G ++ L+ HG D+N TPLH
Sbjct: 26 QDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLH 85
Query: 189 FAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLH 248
A L +++ + L+K+ A + NAVD G +PLH
Sbjct: 86 LAALIGHLEIVEVLLKHGADV-----------NAVD----------------TWGDTPLH 118
Query: 249 IAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRIL 297
+AA G + ++ +L G ADV+ + K + TA ++ +NG + IL
Sbjct: 119 LAAIMGHLEIVEVLLKHG-ADVNAQDKFGK-TAFDISIDNGNEDLAEIL 165
Score = 29.6 bits (65), Expect = 8.1, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 122 TTALLWCVFVKREDLLDALHQLGADLSN-DKYG--ALHLAAFNGSIKGCSWLMLHGHDIN 178
+T L + ++++ L + GAD++ D +G LHLAA G ++ L+ HG D+N
Sbjct: 81 STPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 179 FTKDSYTPLHFAV 191
+D + F +
Sbjct: 141 -AQDKFGKTAFDI 152
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 98.2 bits (243), Expect = 2e-20, Method: Composition-based stats.
Identities = 55/146 (37%), Positives = 88/146 (60%), Gaps = 2/146 (1%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
AA G + +RIL+ N A+ N ++ PLHLAA +E +E+LL+ G+ VNASD
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG 80
Query: 345 RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGAD 404
TPLH + + L + +E+LLK GA+VNA D G++P+H+AA + V+ L+ HGAD
Sbjct: 81 ITPLHLAAATGHLEI--VEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD 138
Query: 405 ISSKTPSGSSALSIIMRNTPSSISSV 430
++++ G +A I + N ++ +
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEI 164
Score = 90.9 bits (224), Expect = 3e-18, Method: Composition-based stats.
Identities = 54/125 (43%), Positives = 76/125 (60%), Gaps = 3/125 (2%)
Query: 262 ILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKC 321
IL + ADV+ T T LHLAA NG++E + +LL+N A+ N + PLHLAA
Sbjct: 32 ILMANGADVN-ATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAAT 90
Query: 322 QSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYS 381
+E +E+LL+ G+ VNA D D TPLH + L + +E+LLK GA+VNA+D FG +
Sbjct: 91 GHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEI--VEVLLKHGADVNAQDKFGKT 148
Query: 382 PIHIA 386
I+
Sbjct: 149 AFDIS 153
Score = 82.4 bits (202), Expect = 9e-16, Method: Composition-based stats.
Identities = 47/129 (36%), Positives = 79/129 (61%), Gaps = 2/129 (1%)
Query: 224 DCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALH 283
D V++L++ + N +N G +PLH+AA G + ++ +L +G ADV+ + +T LH
Sbjct: 28 DEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNG-ADVN-ASDLTGITPLH 85
Query: 284 LAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCD 343
LAA G++E + +LL++ A+ N ++ PLHLAAK +E +E+LL+ G+ VNA D
Sbjct: 86 LAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKF 145
Query: 344 NRTPLHASL 352
+T S+
Sbjct: 146 GKTAFDISI 154
Score = 75.1 bits (183), Expect = 2e-13, Method: Composition-based stats.
Identities = 44/130 (33%), Positives = 73/130 (56%), Gaps = 2/130 (1%)
Query: 318 AAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDI 377
AA+ + + +L+ G+ VNA+D D TPLH + S L + +E+LLK GA+VNA D+
Sbjct: 21 AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEI--VEVLLKNGADVNASDL 78
Query: 378 FGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSS 437
G +P+H+AA + + V+ L+ HGAD+++ G + L + + I V K +
Sbjct: 79 TGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD 138
Query: 438 ISLQDPEAST 447
++ QD T
Sbjct: 139 VNAQDKFGKT 148
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 75/135 (55%), Gaps = 9/135 (6%)
Query: 170 LMLHGHDINFT-KDSYTPLHFAVLGNYVDCAKFLIKNKAHIHE------TIVHSAVSTNA 222
LM +G D+N T D YTPLH A +++ + L+KN A ++ T +H A +T
Sbjct: 33 LMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGH 92
Query: 223 VDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTAL 282
++ V++LL + N +N G +PLH+AA G + ++ +L G ADV+ + K + TA
Sbjct: 93 LEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHG-ADVNAQDKFGK-TAF 150
Query: 283 HLAAENGYVECLRIL 297
++ +NG + IL
Sbjct: 151 DISIDNGNEDLAEIL 165
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 97.4 bits (241), Expect = 3e-20, Method: Composition-based stats.
Identities = 56/151 (37%), Positives = 90/151 (59%), Gaps = 2/151 (1%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
AA G + +RIL+ N A+ N ++ PLHLAA +E +E+LL+ G+ V+ASD
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG 80
Query: 345 RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGAD 404
TPLH + L + +E+LLK GA+VNA D G +P+H+AA + V+ L+ HGAD
Sbjct: 81 YTPLHLAAYWGHLEI--VEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD 138
Query: 405 ISSKTPSGSSALSIIMRNTPSSISSVRKKLD 435
++++ G +A I + N ++ + +KL+
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 82.4 bits (202), Expect = 9e-16, Method: Composition-based stats.
Identities = 50/125 (40%), Positives = 75/125 (60%), Gaps = 3/125 (2%)
Query: 262 ILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKC 321
IL + ADV+ T LHLAA +G++E + +LL++ A+ + + PLHLAA
Sbjct: 32 ILMANGADVN-AADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYW 90
Query: 322 QSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYS 381
+E +E+LL+ G+ VNA D D TPLH + L + +E+LLK GA+VNA+D FG +
Sbjct: 91 GHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEI--VEVLLKHGADVNAQDKFGKT 148
Query: 382 PIHIA 386
I+
Sbjct: 149 AFDIS 153
Score = 80.1 bits (196), Expect = 5e-15, Method: Composition-based stats.
Identities = 49/129 (37%), Positives = 76/129 (58%), Gaps = 2/129 (1%)
Query: 224 DCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALH 283
D V++L++ + N +N G +PLH+AA G + ++ +L G ADVD + T LH
Sbjct: 28 DEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHG-ADVD-ASDVFGYTPLH 85
Query: 284 LAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCD 343
LAA G++E + +LL+N A+ N + PLHLAAK +E +E+LL+ G+ VNA D
Sbjct: 86 LAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKF 145
Query: 344 NRTPLHASL 352
+T S+
Sbjct: 146 GKTAFDISI 154
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 42/130 (32%), Positives = 72/130 (55%), Gaps = 2/130 (1%)
Query: 318 AAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDI 377
AA+ + + +L+ G+ VNA+D TPLH + L + +E+LLK GA+V+A D+
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEI--VEVLLKHGADVDASDV 78
Query: 378 FGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSS 437
FGY+P+H+AA + V+ L+ +GAD+++ G + L + + I V K +
Sbjct: 79 FGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD 138
Query: 438 ISLQDPEAST 447
++ QD T
Sbjct: 139 VNAQDKFGKT 148
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 46/169 (27%), Positives = 82/169 (48%), Gaps = 33/169 (19%)
Query: 133 REDLLDALHQLGADLS---NDKYGALHLAAFNGSIKGCSWLMLHGHDINFTKD-SYTPLH 188
++D + L GAD++ N LHLAA++G ++ L+ HG D++ + YTPLH
Sbjct: 26 QDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLH 85
Query: 189 FAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLH 248
A +++ + L+KN A + N +++ G++PLH
Sbjct: 86 LAAYWGHLEIVEVLLKNGADV---------------------------NAMDSDGMTPLH 118
Query: 249 IAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRIL 297
+AA G + ++ +L G ADV+ + K + TA ++ +NG + IL
Sbjct: 119 LAAKWGYLEIVEVLLKHG-ADVNAQDKFGK-TAFDISIDNGNEDLAEIL 165
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 97.1 bits (240), Expect = 4e-20, Method: Composition-based stats.
Identities = 55/128 (42%), Positives = 84/128 (65%), Gaps = 4/128 (3%)
Query: 243 GVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHA 302
G +PLH+AA G + +K +L++G ADV+ K K R T LHLAA NG++E +++LLE A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAGA 59
Query: 303 NCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPL 362
+ N ++ + PLHLAA+ +E +++LL G+ VNA D + RTPLH + L V +
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV--V 117
Query: 363 EILLKWGA 370
++LL+ GA
Sbjct: 118 KLLLEAGA 125
Score = 97.1 bits (240), Expect = 4e-20, Method: Composition-based stats.
Identities = 52/124 (41%), Positives = 81/124 (65%), Gaps = 2/124 (1%)
Query: 280 TALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNA 339
T LHLAA NG++E +++LLE A+ N ++ + PLHLAA+ +E +++LL G+ VNA
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 340 SDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLI 399
D + RTPLH + L V +++LL+ GA+VNA+D G +P+H+AA + + V L+
Sbjct: 64 KDKNGRTPLHLAARNGHLEV--VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 400 MHGA 403
GA
Sbjct: 122 EAGA 125
Score = 85.5 bits (210), Expect = 1e-16, Method: Composition-based stats.
Identities = 48/124 (38%), Positives = 77/124 (62%), Gaps = 2/124 (1%)
Query: 212 TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVD 271
T +H A ++ V+LLL + N + G +PLH+AA G + +K +L++G ADV+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVN 62
Query: 272 IKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLL 331
K K R T LHLAA NG++E +++LLE A+ N ++ + PLHLAA+ +E +++LL
Sbjct: 63 AKDKNGR-TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 332 RKGS 335
G+
Sbjct: 122 EAGA 125
Score = 82.0 bits (201), Expect = 1e-15, Method: Composition-based stats.
Identities = 44/111 (39%), Positives = 71/111 (63%), Gaps = 2/111 (1%)
Query: 312 QIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGAN 371
+ PLHLAA+ +E +++LL G+ VNA D + RTPLH + L V +++LL+ GA+
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV--VKLLLEAGAD 60
Query: 372 VNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRN 422
VNA+D G +P+H+AA + + V L+ GAD+++K +G + L + RN
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 111
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 50/149 (33%), Positives = 75/149 (50%), Gaps = 30/149 (20%)
Query: 155 LHLAAFNGSIKGCSWLMLHGHDINFT-KDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETI 213
LHLAA NG ++ L+ G D+N K+ TPLH A +++ K L++ A +
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV---- 61
Query: 214 VHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIK 273
N + G +PLH+AA G + +K +L++G ADV+ K
Sbjct: 62 -----------------------NAKDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAK 97
Query: 274 TKERRVTALHLAAENGYVECLRILLENHA 302
K R T LHLAA NG++E +++LLE A
Sbjct: 98 DKNGR-TPLHLAARNGHLEVVKLLLEAGA 125
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 32/105 (30%), Positives = 59/105 (56%), Gaps = 2/105 (1%)
Query: 343 DNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHG 402
+ RTPLH + L V +++LL+ GA+VNA+D G +P+H+AA + + V L+ G
Sbjct: 1 NGRTPLHLAARNGHLEV--VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 403 ADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSSISLQDPEAST 447
AD+++K +G + L + RN + + + + ++ +D T
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT 103
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 135 DLLDALHQLGADL-SNDKYG--ALHLAAFNGSIKGCSWLMLHGHDINFT-KDSYTPLHFA 190
+++ L + GAD+ + DK G LHLAA NG ++ L+ G D+N K+ TPLH A
Sbjct: 49 EVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 108
Query: 191 VLGNYVDCAKFLIKNKAH 208
+++ K L++ A+
Sbjct: 109 ARNGHLEVVKLLLEAGAY 126
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 96.3 bits (238), Expect = 7e-20, Method: Composition-based stats.
Identities = 54/151 (35%), Positives = 89/151 (58%), Gaps = 2/151 (1%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
AA G + +RIL+ N A+ N + PLHL +E +E+LL+ + VNASD
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG 80
Query: 345 RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGAD 404
TPLH + + L + +E+LLK+GA+VNA D GY+P+H+AA + V+ L+ +GAD
Sbjct: 81 WTPLHLAAYRGHLEI--VEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGAD 138
Query: 405 ISSKTPSGSSALSIIMRNTPSSISSVRKKLD 435
++++ G +A I + N ++ + +KL+
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 83.2 bits (204), Expect = 6e-16, Method: Composition-based stats.
Identities = 44/108 (40%), Positives = 66/108 (61%), Gaps = 2/108 (1%)
Query: 279 VTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVN 338
+T LHL NG++E + +LL+ A+ N + PLHLAA +E +E+LL+ G+ VN
Sbjct: 48 ITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN 107
Query: 339 ASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIA 386
A D TPLH + L + +E+LLK+GA+VNA+D FG + I+
Sbjct: 108 AMDYQGYTPLHLAAEDGHLEI--VEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 69.7 bits (169), Expect = 7e-12, Method: Composition-based stats.
Identities = 43/129 (33%), Positives = 75/129 (58%), Gaps = 2/129 (1%)
Query: 224 DCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALH 283
D V++L++ + N + G++PLH+ + G + ++ +L ADV+ K T LH
Sbjct: 28 DEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYA-ADVNASDKSGW-TPLH 85
Query: 284 LAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCD 343
LAA G++E + +LL+ A+ N +++ PLHLAA+ +E +E+LL+ G+ VNA D
Sbjct: 86 LAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKF 145
Query: 344 NRTPLHASL 352
+T S+
Sbjct: 146 GKTAFDISI 154
Score = 67.0 bits (162), Expect = 4e-11, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 71/130 (54%), Gaps = 2/130 (1%)
Query: 318 AAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDI 377
AA+ + + +L+ G+ VNA+D TPLH ++ L + +E+LLK+ A+VNA D
Sbjct: 21 AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEI--IEVLLKYAADVNASDK 78
Query: 378 FGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSS 437
G++P+H+AA + V+ L+ +GAD+++ G + L + + I V K +
Sbjct: 79 SGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGAD 138
Query: 438 ISLQDPEAST 447
++ QD T
Sbjct: 139 VNAQDKFGKT 148
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 66/118 (55%), Gaps = 8/118 (6%)
Query: 197 DCAKFLIKNKAHIHE------TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIA 250
D + L+ N A ++ T +H V+ ++ +++LL + N + G +PLH+A
Sbjct: 28 DEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLA 87
Query: 251 ADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERN 308
A RG + ++ +L G ADV+ + T LHLAAE+G++E + +LL+ A+ N ++
Sbjct: 88 AYRGHLEIVEVLLKYG-ADVN-AMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQD 143
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 73/136 (53%), Gaps = 11/136 (8%)
Query: 170 LMLHGHDINFTKDSY--TPLHFAVLGNYVDCAKFLIKNKAHIHE------TIVHSAVSTN 221
LM +G D+N D + TPLH V +++ + L+K A ++ T +H A
Sbjct: 33 LMANGADVN-ANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRG 91
Query: 222 AVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTA 281
++ V++LL + N ++ +G +PLH+AA+ G + ++ +L G ADV+ + K + TA
Sbjct: 92 HLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYG-ADVNAQDKFGK-TA 149
Query: 282 LHLAAENGYVECLRIL 297
++ +NG + IL
Sbjct: 150 FDISIDNGNEDLAEIL 165
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 135 DLLDALHQLGADL-SNDKYG--ALHLAAFNGSIKGCSWLMLHGHDIN-FTKDSYTPLHFA 190
++++ L + AD+ ++DK G LHLAA+ G ++ L+ +G D+N YTPLH A
Sbjct: 61 EIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLA 120
Query: 191 VLGNYVDCAKFLIKNKAHIH 210
+++ + L+K A ++
Sbjct: 121 AEDGHLEIVEVLLKYGADVN 140
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 93.2 bits (230), Expect = 5e-19, Method: Composition-based stats.
Identities = 55/151 (36%), Positives = 90/151 (59%), Gaps = 2/151 (1%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
AA G + +RIL+ N A+ N + PLHLAA +E +E+LL+ G+ VNA D
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLG 80
Query: 345 RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGAD 404
TPLH L+ + + +E+LLK GA+VNA+D G +P+H+AA + V+ L+ +GAD
Sbjct: 81 STPLH--LAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGAD 138
Query: 405 ISSKTPSGSSALSIIMRNTPSSISSVRKKLD 435
++++ G +A I + N ++ + +KL+
Sbjct: 139 VNAQDKFGKTAFDISINNGNEDLAEILQKLN 169
Score = 85.9 bits (211), Expect = 9e-17, Method: Composition-based stats.
Identities = 46/107 (42%), Positives = 70/107 (65%), Gaps = 2/107 (1%)
Query: 280 TALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNA 339
T LHLAA G++E + +LL+N A+ N + PLHLAA +E +E+LL+ G+ VNA
Sbjct: 49 TPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNA 108
Query: 340 SDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIA 386
D + TPLH + ++ L + +E+LLK+GA+VNA+D FG + I+
Sbjct: 109 KDDNGITPLHLAANRGHLEI--VEVLLKYGADVNAQDKFGKTAFDIS 153
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 46/130 (35%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
Query: 224 DCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALH 283
D V++L++ + N + G +PLH+AA G + ++ +L +G ADV+ T LH
Sbjct: 28 DEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNG-ADVN-AYDTLGSTPLH 85
Query: 284 LAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCD 343
LAA G++E + +LL+N A+ N ++ PLHLAA +E +E+LL+ G+ VNA D
Sbjct: 86 LAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKF 145
Query: 344 NRTPLHASLS 353
+T S++
Sbjct: 146 GKTAFDISIN 155
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 42/130 (32%), Positives = 70/130 (53%), Gaps = 2/130 (1%)
Query: 318 AAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDI 377
AA+ + + +L+ G+ VNA+D TPLH + L + +E+LLK GA+VNA D
Sbjct: 21 AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEI--VEVLLKNGADVNAYDT 78
Query: 378 FGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSS 437
G +P+H+AA + V+ L+ +GAD+++K +G + L + I V K +
Sbjct: 79 LGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGAD 138
Query: 438 ISLQDPEAST 447
++ QD T
Sbjct: 139 VNAQDKFGKT 148
Score = 59.7 bits (143), Expect = 7e-09, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 73/135 (54%), Gaps = 9/135 (6%)
Query: 170 LMLHGHDINFTKD-SYTPLHFAVLGNYVDCAKFLIKNKAHIH------ETIVHSAVSTNA 222
LM +G D+N +TPLH A +++ + L+KN A ++ T +H A
Sbjct: 33 LMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGH 92
Query: 223 VDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTAL 282
++ V++LL + N ++ G++PLH+AA+RG + ++ +L G ADV+ + K + TA
Sbjct: 93 LEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYG-ADVNAQDKFGK-TAF 150
Query: 283 HLAAENGYVECLRIL 297
++ NG + IL
Sbjct: 151 DISINNGNEDLAEIL 165
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 92.4 bits (228), Expect = 9e-19, Method: Composition-based stats.
Identities = 52/138 (37%), Positives = 85/138 (61%), Gaps = 2/138 (1%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
AA G + +RIL+ N A+ N ++ PLHLAA +E +E+LL+ G+ V+A+D
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYG 80
Query: 345 RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGAD 404
TPLH + L + +E+LLK+GA+VNA D+ G +P+H+AA + V+ L+ +GAD
Sbjct: 81 FTPLHLAAMTGHLEI--VEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGAD 138
Query: 405 ISSKTPSGSSALSIIMRN 422
++++ G +A I + N
Sbjct: 139 VNAQDKFGKTAFDISIDN 156
Score = 81.6 bits (200), Expect = 2e-15, Method: Composition-based stats.
Identities = 49/125 (39%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
Query: 262 ILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKC 321
IL + ADV+ +T LHLAA +G++E + +LL++ A+ + + PLHLAA
Sbjct: 32 ILIANGADVN-AVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMT 90
Query: 322 QSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYS 381
+E +E+LL+ G+ VNA D TPLH + + L + +E+LLK+GA+VNA+D FG +
Sbjct: 91 GHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEI--VEVLLKYGADVNAQDKFGKT 148
Query: 382 PIHIA 386
I+
Sbjct: 149 AFDIS 153
Score = 75.9 bits (185), Expect = 9e-14, Method: Composition-based stats.
Identities = 47/129 (36%), Positives = 75/129 (58%), Gaps = 2/129 (1%)
Query: 224 DCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALH 283
D V++L++ + N ++N G++PLH+AA G + ++ +L G ADVD T LH
Sbjct: 28 DEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHG-ADVD-AADVYGFTPLH 85
Query: 284 LAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCD 343
LAA G++E + +LL+ A+ N + PLHLAA +E +E+LL+ G+ VNA D
Sbjct: 86 LAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKF 145
Query: 344 NRTPLHASL 352
+T S+
Sbjct: 146 GKTAFDISI 154
Score = 72.4 bits (176), Expect = 1e-12, Method: Composition-based stats.
Identities = 41/130 (31%), Positives = 74/130 (56%), Gaps = 2/130 (1%)
Query: 318 AAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDI 377
AA+ + + +L+ G+ VNA D TPLH + L + +E+LLK GA+V+A D+
Sbjct: 21 AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEI--VEVLLKHGADVDAADV 78
Query: 378 FGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSS 437
+G++P+H+AA++ + V+ L+ +GAD+++ +GS+ L + I V K +
Sbjct: 79 YGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGAD 138
Query: 438 ISLQDPEAST 447
++ QD T
Sbjct: 139 VNAQDKFGKT 148
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 70/127 (55%), Gaps = 9/127 (7%)
Query: 170 LMLHGHDINFTKDS-YTPLHFAVLGNYVDCAKFLIKNKAHIHE------TIVHSAVSTNA 222
L+ +G D+N ++ TPLH A + +++ + L+K+ A + T +H A T
Sbjct: 33 LIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGH 92
Query: 223 VDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTAL 282
++ V++LL + N + G +PLH+AAD G + ++ +L G ADV+ + K + TA
Sbjct: 93 LEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYG-ADVNAQDKFGK-TAF 150
Query: 283 HLAAENG 289
++ +NG
Sbjct: 151 DISIDNG 157
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 92.0 bits (227), Expect = 1e-18, Method: Composition-based stats.
Identities = 54/151 (35%), Positives = 90/151 (59%), Gaps = 2/151 (1%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
AA G + +RIL+ N A+ N + PLHLAA +E +E+LL+ G+ VNA D
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAG 80
Query: 345 RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGAD 404
TPL + L + +E+LLK GA+VNA D+ G++P+H+AA+ + V+ L+ +GAD
Sbjct: 81 MTPLRLAALFGHLEI--VEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD 138
Query: 405 ISSKTPSGSSALSIIMRNTPSSISSVRKKLD 435
++++ G +A I + N ++ + +KL+
Sbjct: 139 VNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169
Score = 85.9 bits (211), Expect = 9e-17, Method: Composition-based stats.
Identities = 47/107 (43%), Positives = 69/107 (64%), Gaps = 2/107 (1%)
Query: 280 TALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNA 339
T LHLAA NG++E + +LL+N A+ N +H PL LAA +E +E+LL+ G+ VNA
Sbjct: 49 TPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNA 108
Query: 340 SDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIA 386
+D + TPLH + L + +E+LLK GA+VNA+D FG + I+
Sbjct: 109 NDMEGHTPLHLAAMFGHLEI--VEVLLKNGADVNAQDKFGKTAFDIS 153
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 45/129 (34%), Positives = 75/129 (58%), Gaps = 2/129 (1%)
Query: 224 DCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALH 283
D V++L++ + N + G +PLH+AA G + ++ +L +G ADV+ +T L
Sbjct: 28 DEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG-ADVN-AVDHAGMTPLR 85
Query: 284 LAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCD 343
LAA G++E + +LL+N A+ N + + PLHLAA +E +E+LL+ G+ VNA D
Sbjct: 86 LAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKF 145
Query: 344 NRTPLHASL 352
+T S+
Sbjct: 146 GKTAFDISI 154
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 2/130 (1%)
Query: 318 AAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDI 377
AA+ + + +L+ G+ VNA D TPLH + L + +E+LLK GA+VNA D
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEI--VEVLLKNGADVNAVDH 78
Query: 378 FGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSS 437
G +P+ +AAL + V+ L+ +GAD+++ G + L + I V K +
Sbjct: 79 AGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD 138
Query: 438 ISLQDPEAST 447
++ QD T
Sbjct: 139 VNAQDKFGKT 148
Score = 52.8 bits (125), Expect = 8e-07, Method: Composition-based stats.
Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 33/169 (19%)
Query: 133 REDLLDALHQLGADLSNDK---YGALHLAAFNGSIKGCSWLMLHGHDINFTKDS-YTPLH 188
R+D + L GAD++ + + LHLAAFNG ++ L+ +G D+N + TPL
Sbjct: 26 RDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLR 85
Query: 189 FAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLH 248
A L +++ + L+KN A + N + +G +PLH
Sbjct: 86 LAALFGHLEIVEVLLKNGADV---------------------------NANDMEGHTPLH 118
Query: 249 IAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRIL 297
+AA G + ++ +L +G ADV+ + K + TA ++ +NG + IL
Sbjct: 119 LAAMFGHLEIVEVLLKNG-ADVNAQDKFGK-TAFDISIDNGNEDLAEIL 165
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 57/110 (51%), Gaps = 7/110 (6%)
Query: 362 LEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMR 421
+ IL+ GA+VNA D G++P+H+AA + + V+ L+ +GAD+++ +G + L +
Sbjct: 30 VRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL 89
Query: 422 NTPSSISSVRKKLDSSISLQDPEASTKDIELKLNFKY------ILQNGPD 465
I V K + ++ D E T + L F + +L+NG D
Sbjct: 90 FGHLEIVEVLLKNGADVNANDMEGHTP-LHLAAMFGHLEIVEVLLKNGAD 138
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 90.5 bits (223), Expect = 3e-18, Method: Composition-based stats.
Identities = 50/134 (37%), Positives = 79/134 (58%), Gaps = 2/134 (1%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
AAENG + ++ L+EN A+ N + + PLH AAK E +++L+ KG+ VNA D D
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 70
Query: 345 RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGAD 404
RTPLH + + + +++L+ GA+VNA+D G +P+H AA + V LI GAD
Sbjct: 71 RTPLHYAAKEGHKEI--VKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD 128
Query: 405 ISSKTPSGSSALSI 418
+++ G + L +
Sbjct: 129 VNTSDSDGRTPLDL 142
Score = 81.6 bits (200), Expect = 2e-15, Method: Composition-based stats.
Identities = 48/137 (35%), Positives = 82/137 (59%), Gaps = 4/137 (2%)
Query: 250 AADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNH 309
AA+ G +K ++++G ADV+ + R T LH AA+ G+ E +++L+ A+ N ++
Sbjct: 11 AAENGNKDRVKDLIENG-ADVNASDSDGR-TPLHYAAKEGHKEIVKLLISKGADVNAKDS 68
Query: 310 KEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWG 369
+ PLH AAK E +++L+ KG+ VNA D D RTPLH + + + +++L+ G
Sbjct: 69 DGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEI--VKLLISKG 126
Query: 370 ANVNARDIFGYSPIHIA 386
A+VN D G +P+ +A
Sbjct: 127 ADVNTSDSDGRTPLDLA 143
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 330 LLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALS 389
L+ G+ VNASD D RTPLH + + + +++L+ GA+VNA+D G +P+H AA
Sbjct: 23 LIENGADVNASDSDGRTPLHYAAKEGHKEI--VKLLISKGADVNAKDSDGRTPLHYAAKE 80
Query: 390 ELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSSISLQDPEAST 447
+ V LI GAD+++K G + L + I + + ++ D + T
Sbjct: 81 GHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRT 138
Score = 63.5 bits (153), Expect = 5e-10, Method: Composition-based stats.
Identities = 45/144 (31%), Positives = 77/144 (53%), Gaps = 8/144 (5%)
Query: 197 DCAKFLIKNKAHIH------ETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIA 250
D K LI+N A ++ T +H A + V+LL+S + N ++ G +PLH A
Sbjct: 18 DRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYA 77
Query: 251 ADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHK 310
A G +K ++ G ADV+ K + R T LH AA+ G+ E +++L+ A+ N +
Sbjct: 78 AKEGHKEIVKLLISKG-ADVNAKDSDGR-TPLHYAAKEGHKEIVKLLISKGADVNTSDSD 135
Query: 311 EQIPLHLAAKCQSVECMEMLLRKG 334
+ PL LA + + E +++L ++G
Sbjct: 136 GRTPLDLAREHGNEEIVKLLEKQG 159
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 88.6 bits (218), Expect = 1e-17, Method: Composition-based stats.
Identities = 50/134 (37%), Positives = 79/134 (58%), Gaps = 2/134 (1%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
AAENG + ++ L+EN A+ N + + PLH AA+ E +++L+ KG+ VNA D D
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDG 70
Query: 345 RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGAD 404
RTPLH + V +++L+ GA+VNA+D G +P+H AA + + V LI GAD
Sbjct: 71 RTPLHHAAENGHKEV--VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD 128
Query: 405 ISSKTPSGSSALSI 418
+++ G + L +
Sbjct: 129 VNTSDSDGRTPLDL 142
Score = 84.0 bits (206), Expect = 4e-16, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 82/137 (59%), Gaps = 4/137 (2%)
Query: 250 AADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNH 309
AA+ G +K ++++G ADV+ + R T LH AAENG+ E +++L+ A+ N ++
Sbjct: 11 AAENGNKDRVKDLIENG-ADVNASDSDGR-TPLHHAAENGHKEVVKLLISKGADVNAKDS 68
Query: 310 KEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWG 369
+ PLH AA+ E +++L+ KG+ VNA D D RTPLH + V +++L+ G
Sbjct: 69 DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV--VKLLISKG 126
Query: 370 ANVNARDIFGYSPIHIA 386
A+VN D G +P+ +A
Sbjct: 127 ADVNTSDSDGRTPLDLA 143
Score = 68.6 bits (166), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/144 (32%), Positives = 79/144 (54%), Gaps = 8/144 (5%)
Query: 197 DCAKFLIKNKAHIH------ETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIA 250
D K LI+N A ++ T +H A + V+LL+S + N ++ G +PLH A
Sbjct: 18 DRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHA 77
Query: 251 ADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHK 310
A+ G +K ++ G ADV+ K + R T LH AAENG+ E +++L+ A+ N +
Sbjct: 78 AENGHKEVVKLLISKG-ADVNAKDSDGR-TPLHHAAENGHKEVVKLLISKGADVNTSDSD 135
Query: 311 EQIPLHLAAKCQSVECMEMLLRKG 334
+ PL LA + + E +++L ++G
Sbjct: 136 GRTPLDLAREHGNEEVVKLLEKQG 159
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 330 LLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALS 389
L+ G+ VNASD D RTPLH + V +++L+ GA+VNA+D G +P+H AA +
Sbjct: 23 LIENGADVNASDSDGRTPLHHAAENGHKEV--VKLLISKGADVNAKDSDGRTPLHHAAEN 80
Query: 390 ELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSSISLQDPEAST 447
+ V LI GAD+++K G + L N + + + ++ D + T
Sbjct: 81 GHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRT 138
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 86.7 bits (213), Expect = 6e-17, Method: Composition-based stats.
Identities = 51/125 (40%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Query: 224 DCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALH 283
D V+ LL +PN ++ G +PLH AA+ G +K +L G AD + K + R T LH
Sbjct: 18 DRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKG-ADPNAKDSDGR-TPLH 75
Query: 284 LAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCD 343
AAENG+ E +++LL A+ N ++ + PLH AA+ E +++LL KG+ N SD D
Sbjct: 76 YAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSD 135
Query: 344 NRTPL 348
RTPL
Sbjct: 136 GRTPL 140
Score = 82.8 bits (203), Expect = 7e-16, Method: Composition-based stats.
Identities = 49/134 (36%), Positives = 76/134 (56%), Gaps = 2/134 (1%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
AAENG + ++ LLEN A+ N + + PLH AA+ E +++LL KG+ NA D D
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG 70
Query: 345 RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGAD 404
RTPLH + + +++LL GA+ NA+D G +P+H AA + + V L+ GAD
Sbjct: 71 RTPLHYAAENGHKEI--VKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD 128
Query: 405 ISSKTPSGSSALSI 418
++ G + L +
Sbjct: 129 PNTSDSDGRTPLDL 142
Score = 79.7 bits (195), Expect = 6e-15, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 79/137 (57%), Gaps = 4/137 (2%)
Query: 250 AADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNH 309
AA+ G +K +L++G AD + + R T LH AAENG+ E +++LL A+ N ++
Sbjct: 11 AAENGNKDRVKDLLENG-ADPNASDSDGR-TPLHYAAENGHKEIVKLLLSKGADPNAKDS 68
Query: 310 KEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWG 369
+ PLH AA+ E +++LL KG+ NA D D RTPLH + + +++LL G
Sbjct: 69 DGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEI--VKLLLSKG 126
Query: 370 ANVNARDIFGYSPIHIA 386
A+ N D G +P+ +A
Sbjct: 127 ADPNTSDSDGRTPLDLA 143
Score = 70.1 bits (170), Expect = 6e-12, Method: Composition-based stats.
Identities = 44/123 (35%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 212 TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVD 271
T +H A + V+LLLS +PN ++ G +PLH AA+ G +K +L G AD +
Sbjct: 39 TPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKG-ADPN 97
Query: 272 IKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLL 331
K + R T LH AAENG+ E +++LL A+ N + + PL LA + + E +++L
Sbjct: 98 AKDSDGR-TPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLE 156
Query: 332 RKG 334
++G
Sbjct: 157 KQG 159
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 330 LLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALS 389
LL G+ NASD D RTPLH + + +++LL GA+ NA+D G +P+H AA +
Sbjct: 23 LLENGADPNASDSDGRTPLHYAAENGHKEI--VKLLLSKGADPNAKDSDGRTPLHYAAEN 80
Query: 390 ELSQCVDCLIMHGADISSKTPSGSSALSIIMRN 422
+ V L+ GAD ++K G + L N
Sbjct: 81 GHKEIVKLLLSKGADPNAKDSDGRTPLHYAAEN 113
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 85.9 bits (211), Expect = 8e-17, Method: Composition-based stats.
Identities = 49/134 (36%), Positives = 78/134 (58%), Gaps = 2/134 (1%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
AAENG + ++ LLEN A+ N + + PLHLAA+ E +++LL +G+ NA D D
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG 70
Query: 345 RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGAD 404
+TPLH + V +++LL GA+ NA+D G +P+H+AA + + V L+ GAD
Sbjct: 71 KTPLHLAAENGHKEV--VKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD 128
Query: 405 ISSKTPSGSSALSI 418
++ G + L +
Sbjct: 129 PNTSDSDGRTPLDL 142
Score = 83.6 bits (205), Expect = 4e-16, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 82/137 (59%), Gaps = 4/137 (2%)
Query: 250 AADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNH 309
AA+ G +K +L++G ADV+ + + T LHLAAENG+ E +++LL A+ N ++
Sbjct: 11 AAENGNKDRVKDLLENG-ADVNASDSDGK-TPLHLAAENGHKEVVKLLLSQGADPNAKDS 68
Query: 310 KEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWG 369
+ PLHLAA+ E +++LL +G+ NA D D +TPLH + V +++LL G
Sbjct: 69 DGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEV--VKLLLSQG 126
Query: 370 ANVNARDIFGYSPIHIA 386
A+ N D G +P+ +A
Sbjct: 127 ADPNTSDSDGRTPLDLA 143
Score = 74.3 bits (181), Expect = 3e-13, Method: Composition-based stats.
Identities = 49/144 (34%), Positives = 82/144 (56%), Gaps = 8/144 (5%)
Query: 197 DCAKFLIKNKAHIH------ETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIA 250
D K L++N A ++ +T +H A + V+LLLS +PN ++ G +PLH+A
Sbjct: 18 DRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLA 77
Query: 251 ADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHK 310
A+ G +K +L G AD + K + + T LHLAAENG+ E +++LL A+ N +
Sbjct: 78 AENGHKEVVKLLLSQG-ADPNAKDSDGK-TPLHLAAENGHKEVVKLLLSQGADPNTSDSD 135
Query: 311 EQIPLHLAAKCQSVECMEMLLRKG 334
+ PL LA + + E +++L ++G
Sbjct: 136 GRTPLDLAREHGNEEVVKLLEKQG 159
Score = 63.2 bits (152), Expect = 6e-10, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 330 LLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALS 389
LL G+ VNASD D +TPLH + V +++LL GA+ NA+D G +P+H+AA +
Sbjct: 23 LLENGADVNASDSDGKTPLHLAAENGHKEV--VKLLLSQGADPNAKDSDGKTPLHLAAEN 80
Query: 390 ELSQCVDCLIMHGADISSKTPSGSSALSIIMRN 422
+ V L+ GAD ++K G + L + N
Sbjct: 81 GHKEVVKLLLSQGADPNAKDSDGKTPLHLAAEN 113
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 51/168 (30%), Positives = 76/168 (45%), Gaps = 33/168 (19%)
Query: 134 EDLLDALHQLGADLS---NDKYGALHLAAFNGSIKGCSWLMLHGHDINFT-KDSYTPLHF 189
+D + L + GAD++ +D LHLAA NG + L+ G D N D TPLH
Sbjct: 17 KDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHL 76
Query: 190 AVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHI 249
A + + V+LLLS +PN ++ G +PLH+
Sbjct: 77 AAENGH---------------------------KEVVKLLLSQGADPNAKDSDGKTPLHL 109
Query: 250 AADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRIL 297
AA+ G +K +L G AD + + R T L LA E+G E +++L
Sbjct: 110 AAENGHKEVVKLLLSQG-ADPNTSDSDGR-TPLDLAREHGNEEVVKLL 155
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 82.4 bits (202), Expect = 1e-15, Method: Composition-based stats.
Identities = 69/234 (29%), Positives = 120/234 (51%), Gaps = 22/234 (9%)
Query: 211 ETIVHSAVSTNAVDCVQLLLSL----QINPNVLNNKGVSPLHIAADRGLISCLKAILDSG 266
+T +H AV + V L++L ++ NN +PLH+A L S ++ ++ +G
Sbjct: 10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69
Query: 267 MADVDIKTKERRVTALHLAAENGYVECLRILLENHA----NCNERNHKEQIPLHLAAKCQ 322
+ + + + TA HLA E+ CLR LL++ A + RN+ LH+A +
Sbjct: 70 ASPMALDRHGQ--TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE 127
Query: 323 SVECMEMLLRKGSQVNASDCDN-RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYS 381
E +++LL +G+ ++A D + R+PL ++ N LS+ +++LL+ GANVNA+ G S
Sbjct: 128 CQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM--VQLLLQHGANVNAQMYSGSS 185
Query: 382 PIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLD 435
+H A+ L V L+ GAD S+L +TP ++ R+ +D
Sbjct: 186 ALHSASGRGLLPLVRTLVRSGAD---------SSLKNCHNDTPLMVARSRRVID 230
Score = 61.6 bits (148), Expect = 2e-09, Method: Composition-based stats.
Identities = 55/222 (24%), Positives = 101/222 (45%), Gaps = 20/222 (9%)
Query: 155 LHLAAFNGSIKGCSWLM----LHGHDINFTKD-SYTPLHFAVLGNYVDCAKFLIKNKAHI 209
LH+A G++ L+ G +++ + TPLH AV+ + L+ A
Sbjct: 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP 72
Query: 210 H------ETIVHSAVSTNAVDCVQLLLSLQINPNVL-----NNKGVSPLHIAADRGLISC 258
+T H A + C++ LL P L N G++ LH+A +
Sbjct: 73 MALDRHGQTAAHLACEHRSPTCLRALLD-SAAPGTLDLEARNYDGLTALHVAVNTECQET 131
Query: 259 LKAILDSGMADVD-IKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHL 317
++ +L+ G AD+D + K R +H A EN + +++LL++ AN N + + LH
Sbjct: 132 VQLLLERG-ADIDAVDIKSGRSPLIH-AVENNSLSMVQLLLQHGANVNAQMYSGSSALHS 189
Query: 318 AAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSV 359
A+ + + L+R G+ + +C N TPL + S+ ++ +
Sbjct: 190 ASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDI 231
Score = 32.3 bits (72), Expect = 1.1, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 11/137 (8%)
Query: 136 LLDALHQLGADLSNDKYG---ALHLAAFNGSIKGCSWLMLHGHDINFT--KDSYTPLHFA 190
LLD+ DL Y ALH+A + L+ G DI+ K +PL A
Sbjct: 98 LLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHA 157
Query: 191 VLGNYVDCAKFLIKNKAHIH------ETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGV 244
V N + + L+++ A+++ + +HSA + V+ L+ + ++ N
Sbjct: 158 VENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHND 217
Query: 245 SPLHIAADRGLISCLKA 261
+PL +A R +I L+
Sbjct: 218 TPLMVARSRRVIDILRG 234
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 106/208 (50%), Gaps = 19/208 (9%)
Query: 152 YGALHLAAFNGSIKGCSWLMLHGHDINF-TKDSYTPLHFAVLGNYVDCAKFLIKNKAHIH 210
+ +H AA +G L+ G +N T D +PLH A LG ++ C K L+K+ A ++
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 211 ------ETIVHSAVSTNAVDCVQLLL----SLQINPNVLNNKGVSPLHIAADRGLISCLK 260
T + +A + + DCV LLL S+Q ++ SP+H AA RG + C+
Sbjct: 64 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL-----ASPIHEAARRGHVECVN 118
Query: 261 AILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAK 320
+++ G ++D K T L+LA EN C++ LLE+ A+ N+ ++ PLH A+
Sbjct: 119 SLIAYG-GNIDHKISHLG-TPLYLACENQQRACVKKLLESGADVNQGKGQDS-PLHAVAR 175
Query: 321 CQSVECMEMLLRKGSQVNASDCDNRTPL 348
S E +L+ G+ A + + + P+
Sbjct: 176 TASEELACLLMDFGADTQAKNAEGKRPV 203
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 101/208 (48%), Gaps = 7/208 (3%)
Query: 245 SPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANC 304
SP+H AA G L+ ++ G A V+I T + V+ LH A G++ C++ILL++ A
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWA-VNIITADH-VSPLHEACLGGHLSCVKILLKHGAQV 62
Query: 305 NERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEI 364
N PL A S +C+ +LL+ G+ V + D +P+H + + V +
Sbjct: 63 NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRG--HVECVNS 119
Query: 365 LLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTP 424
L+ +G N++ + +P+++A ++ CV L+ GAD+ ++ S L + R
Sbjct: 120 LIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV-NQGKGQDSPLHAVARTAS 178
Query: 425 SSISSVRKKLDSSISLQDPEASTKDIEL 452
++ + + ++ E + +EL
Sbjct: 179 EELACLLMDFGADTQAKNAEGK-RPVEL 205
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 8/189 (4%)
Query: 237 NVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRI 296
N++ VSPLH A G +SC+K +L G A V+ T + T L A +G +C+ +
Sbjct: 30 NIITADHVSPLHEACLGGHLSCVKILLKHG-AQVNGVTADWH-TPLFNACVSGSWDCVNL 87
Query: 297 LLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNI 356
LL++ A+ + P+H AA+ VEC+ L+ G ++ TPL+ +
Sbjct: 88 LLQHGASVQPESDLAS-PIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQ 146
Query: 357 LSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMH-GADISSKTPSGSSA 415
+ ++ LL+ GA+VN + SP+H A + S+ + CL+M GAD +K G
Sbjct: 147 RAC--VKKLLESGADVN-QGKGQDSPLHAVARTA-SEELACLLMDFGADTQAKNAEGKRP 202
Query: 416 LSIIMRNTP 424
+ ++ +P
Sbjct: 203 VELVPPESP 211
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 82/210 (39%), Gaps = 50/210 (23%)
Query: 127 WCVFVKREDLLDALHQ--LGADLSNDK----YGA--------LHLAAFNGSIKGCSW--- 169
W V + D + LH+ LG LS K +GA H FN + G SW
Sbjct: 27 WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSG-SWDCV 85
Query: 170 --LMLHGHDINFTKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQ 227
L+ HG + D +P+H A +V+C LI +I I H
Sbjct: 86 NLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG---------- 135
Query: 228 LLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAE 287
+PL++A + +C+K +L+SG D+ + + + LH A
Sbjct: 136 -----------------TPLYLACENQQRACVKKLLESG---ADVNQGKGQDSPLHAVAR 175
Query: 288 NGYVECLRILLENHANCNERNHKEQIPLHL 317
E +L++ A+ +N + + P+ L
Sbjct: 176 TASEELACLLMDFGADTQAKNAEGKRPVEL 205
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 13/174 (7%)
Query: 314 PLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVN 373
P+H AA + L+ +G VN D+ +PLH + LS ++ILLK GA VN
Sbjct: 6 PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSC--VKILLKHGAQVN 63
Query: 374 ARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSV--- 430
++P+ A +S CV+ L+ HGA + ++ S R ++S+
Sbjct: 64 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAY 123
Query: 431 RKKLDSSIS-LQDPEASTKDIELKLNFKYILQNGPDGEIGMLKIFQNDGQKEIL 483
+D IS L P + + + K +L++G D + Q GQ L
Sbjct: 124 GGNIDHKISHLGTPLYLACENQQRACVKKLLESGAD-------VNQGKGQDSPL 170
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 80.5 bits (197), Expect = 4e-15, Method: Composition-based stats.
Identities = 42/118 (35%), Positives = 73/118 (61%), Gaps = 2/118 (1%)
Query: 318 AAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDI 377
AA+ + + +L+ G+ VNA D D TPLH L+ + + +E+LLK+GA+VNA D
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLH--LAAQLGHLEIVEVLLKYGADVNAEDN 78
Query: 378 FGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLD 435
FG +P+H+AA+ + V+ L+ HGAD++++ G +A I + N ++ + +KL+
Sbjct: 79 FGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 71.6 bits (174), Expect = 2e-12, Method: Composition-based stats.
Identities = 42/102 (41%), Positives = 62/102 (60%), Gaps = 2/102 (1%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
AA G + +RIL+ N A+ N + PLHLAA+ +E +E+LL+ G+ VNA D
Sbjct: 21 AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFG 80
Query: 345 RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIA 386
TPLH + + L + +E+LLK GA+VNA+D FG + I+
Sbjct: 81 ITPLHLAAIRGHLEI--VEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 262 ILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKC 321
IL + ADV+ E +T LHLAA+ G++E + +LL+ A+ N ++ PLHLAA
Sbjct: 32 ILMANGADVN-ALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIR 90
Query: 322 QSVECMEMLLRKGSQVNASDCDNRTPLHASL 352
+E +E+LL+ G+ VNA D +T S+
Sbjct: 91 GHLEIVEVLLKHGADVNAQDKFGKTAFDISI 121
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 30/129 (23%)
Query: 170 LMLHGHDIN-FTKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQL 228
LM +G D+N +D TPLH A +++ + L+K A +
Sbjct: 33 LMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADV------------------- 73
Query: 229 LLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAEN 288
N +N G++PLH+AA RG + ++ +L G ADV+ + K + TA ++ +N
Sbjct: 74 --------NAEDNFGITPLHLAAIRGHLEIVEVLLKHG-ADVNAQDKFGK-TAFDISIDN 123
Query: 289 GYVECLRIL 297
G + IL
Sbjct: 124 GNEDLAEIL 132
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 45/86 (52%)
Query: 362 LEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMR 421
+ IL+ GA+VNA D G +P+H+AA + V+ L+ +GAD++++ G + L +
Sbjct: 30 VRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAI 89
Query: 422 NTPSSISSVRKKLDSSISLQDPEAST 447
I V K + ++ QD T
Sbjct: 90 RGHLEIVEVLLKHGADVNAQDKFGKT 115
Score = 37.0 bits (84), Expect = 0.052, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 133 REDLLDALHQLGAD---LSNDKYGALHLAAFNGSIKGCSWLMLHGHDINFTKDSY--TPL 187
++D + L GAD L D LHLAA G ++ L+ +G D+N +D++ TPL
Sbjct: 26 QDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN-AEDNFGITPL 84
Query: 188 HFAVLGNYVDCAKFLIKNKAHIH 210
H A + +++ + L+K+ A ++
Sbjct: 85 HLAAIRGHLEIVEVLLKHGADVN 107
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 105/208 (50%), Gaps = 19/208 (9%)
Query: 152 YGALHLAAFNGSIKGCSWLMLHGHDINF-TKDSYTPLHFAVLGNYVDCAKFLIKNKAHIH 210
+ +H AA +G L+ G +N T D +PLH A LG ++ C K L+K+ A ++
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119
Query: 211 ------ETIVHSAVSTNAVDCVQLLL----SLQINPNVLNNKGVSPLHIAADRGLISCLK 260
T + +A + + DCV LLL S+Q ++ SP+H AA RG + C+
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDL-----ASPIHEAARRGHVECVN 174
Query: 261 AILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAK 320
+++ G ++D K T L+LA EN C++ LLE+ A+ N+ ++ PLH +
Sbjct: 175 SLIAYG-GNIDHKISHLG-TPLYLACENQQRACVKKLLESGADVNQGKGQDS-PLHAVVR 231
Query: 321 CQSVECMEMLLRKGSQVNASDCDNRTPL 348
S E +L+ G+ A + + + P+
Sbjct: 232 TASEELACLLMDFGADTQAKNAEGKRPV 259
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 85/162 (52%), Gaps = 5/162 (3%)
Query: 245 SPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANC 304
SP+H AA G L+ ++ G A V+I T + V+ LH A G++ C++ILL++ A
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWA-VNIITADH-VSPLHEACLGGHLSCVKILLKHGAQV 118
Query: 305 NERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEI 364
N PL A S +C+ +LL+ G+ V + D +P+H + + V +
Sbjct: 119 NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRG--HVECVNS 175
Query: 365 LLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADIS 406
L+ +G N++ + +P+++A ++ CV L+ GAD++
Sbjct: 176 LIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN 217
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/189 (29%), Positives = 95/189 (50%), Gaps = 8/189 (4%)
Query: 237 NVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRI 296
N++ VSPLH A G +SC+K +L G A V+ T + T L A +G +C+ +
Sbjct: 86 NIITADHVSPLHEACLGGHLSCVKILLKHG-AQVNGVTADWH-TPLFNACVSGSWDCVNL 143
Query: 297 LLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNI 356
LL++ A+ + P+H AA+ VEC+ L+ G ++ TPL+ +
Sbjct: 144 LLQHGASVQPESDLAS-PIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQ 202
Query: 357 LSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMH-GADISSKTPSGSSA 415
+ ++ LL+ GA+VN + SP+H A + S+ + CL+M GAD +K G
Sbjct: 203 RAC--VKKLLESGADVN-QGKGQDSPLH-AVVRTASEELACLLMDFGADTQAKNAEGKRP 258
Query: 416 LSIIMRNTP 424
+ ++ +P
Sbjct: 259 VELVPPESP 267
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 81/210 (38%), Gaps = 50/210 (23%)
Query: 127 WCVFVKREDLLDALHQ--LGADLSNDK----YGA--------LHLAAFNGSIKGCSW--- 169
W V + D + LH+ LG LS K +GA H FN + G SW
Sbjct: 83 WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSG-SWDCV 141
Query: 170 --LMLHGHDINFTKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQ 227
L+ HG + D +P+H A +V+C LI +I I H
Sbjct: 142 NLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG---------- 191
Query: 228 LLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAE 287
+PL++A + +C+K +L+SG D+ + + + LH
Sbjct: 192 -----------------TPLYLACENQQRACVKKLLESG---ADVNQGKGQDSPLHAVVR 231
Query: 288 NGYVECLRILLENHANCNERNHKEQIPLHL 317
E +L++ A+ +N + + P+ L
Sbjct: 232 TASEELACLLMDFGADTQAKNAEGKRPVEL 261
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 314 PLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVN 373
P+H AA + L+ +G VN D+ +PLH + LS ++ILLK GA VN
Sbjct: 62 PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSC--VKILLKHGAQVN 119
Query: 374 ARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKT 409
++P+ A +S CV+ L+ HGA + ++
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES 155
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 111/230 (48%), Gaps = 10/230 (4%)
Query: 214 VHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIK 273
+H+A VD +L+ N + + +PL AA+ + +K ++ +G A VD K
Sbjct: 15 LHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG-ALVDPK 73
Query: 274 TKERRVTALHLAAENGYVECLRILLEN-HANCNERNHKEQIPLHLAAKCQSVECMEMLLR 332
E T LHLAA+ G+ E ++ LL N + N ++ P+ A + + V+ +++LL
Sbjct: 74 DAEGS-TCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS 132
Query: 333 KGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELS 392
KGS +N D + LH + + + EILL +++A +I G SP+HIAA
Sbjct: 133 KGSDINIRDNEENICLHWAAFSGCVDI--AEILLAAKCDLHAVNIHGDSPLHIAARENRY 190
Query: 393 QCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSSISLQD 442
CV + +D++ K G + L N S V L S +LQD
Sbjct: 191 DCVVLFLSRDSDVTLKNKEGETPLQCASLN-----SQVWSALQMSKALQD 235
Score = 75.9 bits (185), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 109/219 (49%), Gaps = 11/219 (5%)
Query: 150 DKYGALHLAAFNGSIKGCSWLMLHGHDIN-FTKDSYTPLHFAVLGNYVDCAKFLIKNKAH 208
+K LH AA G + C L+ G +I+ ++D TPL A N+++ K+LIK A
Sbjct: 10 NKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL 69
Query: 209 IH------ETIVHSAVSTNAVDCVQLLLS-LQINPNVLNNKGVSPLHIAADRGLISCLKA 261
+ T +H A + VQ LLS Q++ N ++ G +P+ A + + +K
Sbjct: 70 VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKL 129
Query: 262 ILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKC 321
+L G +D++I+ E + LH AA +G V+ ILL + + N PLH+AA+
Sbjct: 130 LLSKG-SDINIRDNEENIC-LHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARE 187
Query: 322 QSVECMEMLLRKGSQVNASDCDNRTPLH-ASLSKNILSV 359
+C+ + L + S V + + TPL ASL+ + S
Sbjct: 188 NRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSA 226
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 71/132 (53%), Gaps = 3/132 (2%)
Query: 276 ERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGS 335
+ + + LH AAE G+V+ +L++ AN + + ++ PL AA+ +E ++ L++ G+
Sbjct: 9 QNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA 68
Query: 336 QVNASDCDNRTPLHASLSKNILSVHPLEILLKWGA-NVNARDIFGYSPIHIAALSELSQC 394
V+ D + T LH + K V ++ LL G +VN +D G++P+ A +
Sbjct: 69 LVDPKDAEGSTCLHLAAKKGHYEV--VQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDL 126
Query: 395 VDCLIMHGADIS 406
V L+ G+DI+
Sbjct: 127 VKLLLSKGSDIN 138
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 301 HANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVH 360
H N + ++ PLH AA+ V+ ML++ G+ ++ D RTPL + N L
Sbjct: 1 HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEA- 59
Query: 361 PLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGA-DISSKTPSG 412
++ L+K GA V+ +D G + +H+AA + V L+ +G D++ + G
Sbjct: 60 -VKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGG 111
Score = 35.8 bits (81), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 53/138 (38%), Gaps = 41/138 (29%)
Query: 123 TALLWCVFVKREDLLDALHQLGADLS---NDKYGALHLAAFNGSIKGCSWLMLHGHDINF 179
T ++W K DL+ L G+D++ N++ LH AAF+G
Sbjct: 113 TPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGC---------------- 156
Query: 180 TKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHS------AVSTNAVDCVQLLLSLQ 233
VD A+ L+ K +H +H A N DCV L LS
Sbjct: 157 ----------------VDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRD 200
Query: 234 INPNVLNNKGVSPLHIAA 251
+ + N +G +PL A+
Sbjct: 201 SDVTLKNKEGETPLQCAS 218
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 77.4 bits (189), Expect = 3e-14, Method: Composition-based stats.
Identities = 44/102 (43%), Positives = 62/102 (60%), Gaps = 2/102 (1%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
AA G + +RIL+ N A+ N + K PLHLAA +E +E+LL+ G+ VNA D D
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDG 80
Query: 345 RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIA 386
TPLH + L + +E+LLK GA+VNA+D FG + I+
Sbjct: 81 STPLHLAALFGHLEI--VEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 74.3 bits (181), Expect = 3e-13, Method: Composition-based stats.
Identities = 41/118 (34%), Positives = 71/118 (60%), Gaps = 2/118 (1%)
Query: 318 AAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDI 377
AA+ + + +L+ G+ VNA+D TPLH + + L + +E+LLK GA+VNA D
Sbjct: 21 AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEI--VEVLLKHGADVNAHDN 78
Query: 378 FGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLD 435
G +P+H+AAL + V+ L+ HGAD++++ G +A I + N ++ + +KL+
Sbjct: 79 DGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 262 ILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKC 321
IL + ADV+ ++ T LHLAA+ ++E + +LL++ A+ N ++ PLHLAA
Sbjct: 32 ILMANGADVNANDRKGN-TPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALF 90
Query: 322 QSVECMEMLLRKGSQVNASDCDNRTPLHASL 352
+E +E+LL+ G+ VNA D +T S+
Sbjct: 91 GHLEIVEVLLKHGADVNAQDKFGKTAFDISI 121
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 28/86 (32%), Positives = 46/86 (53%)
Query: 362 LEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMR 421
+ IL+ GA+VNA D G +P+H+AA + + V+ L+ HGAD+++ GS+ L +
Sbjct: 30 VRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAAL 89
Query: 422 NTPSSISSVRKKLDSSISLQDPEAST 447
I V K + ++ QD T
Sbjct: 90 FGHLEIVEVLLKHGADVNAQDKFGKT 115
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 133 REDLLDALHQLGADL-SNDKYG--ALHLAAFNGSIKGCSWLMLHGHDIN-FTKDSYTPLH 188
++D + L GAD+ +ND+ G LHLAA ++ L+ HG D+N D TPLH
Sbjct: 26 QDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLH 85
Query: 189 FAVLGNYVDCAKFLIKNKAHIH 210
A L +++ + L+K+ A ++
Sbjct: 86 LAALFGHLEIVEVLLKHGADVN 107
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 56/107 (52%), Gaps = 8/107 (7%)
Query: 197 DCAKFLIKNKAHIH------ETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIA 250
D + L+ N A ++ T +H A + ++ V++LL + N +N G +PLH+A
Sbjct: 28 DEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLA 87
Query: 251 ADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRIL 297
A G + ++ +L G ADV+ + K + TA ++ +NG + IL
Sbjct: 88 ALFGHLEIVEVLLKHG-ADVNAQDKFGK-TAFDISIDNGNEDLAEIL 132
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 77.0 bits (188), Expect = 4e-14, Method: Composition-based stats.
Identities = 43/102 (42%), Positives = 64/102 (62%), Gaps = 2/102 (1%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
A G + +RIL+ N A+ N + PLHLAAK +E +E+LL+ G+ VNASD
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWG 80
Query: 345 RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIA 386
RTPLH L+ + + +E+LL++GA+VNA+D FG + I+
Sbjct: 81 RTPLH--LAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Score = 70.1 bits (170), Expect = 4e-12, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Query: 327 MEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIA 386
+ +L+ G+ VNA D TPLH + + L + +E+LLK GA+VNA D +G +P+H+A
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEI--VEVLLKHGADVNASDSWGRTPLHLA 87
Query: 387 ALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLD 435
A + V+ L+ +GAD++++ G +A I + N ++ + +KL+
Sbjct: 88 ATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 262 ILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKC 321
IL + ADV+ + VT LHLAA+ G++E + +LL++ A+ N + + PLHLAA
Sbjct: 32 ILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATV 90
Query: 322 QSVECMEMLLRKGSQVNASDCDNRTPLHASL 352
+E +E+LL G+ VNA D +T S+
Sbjct: 91 GHLEIVEVLLEYGADVNAQDKFGKTAFDISI 121
Score = 56.2 bits (134), Expect = 8e-08, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 224 DCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALH 283
D V++L++ + N +++ GV+PLH+AA RG + ++ +L G ADV+ R T LH
Sbjct: 28 DEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG-ADVNASDSWGR-TPLH 85
Query: 284 LAAENGYVECLRILLENHANCNERN 308
LAA G++E + +LLE A+ N ++
Sbjct: 86 LAATVGHLEIVEVLLEYGADVNAQD 110
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 44/86 (51%)
Query: 362 LEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMR 421
+ IL+ GA+VNA D G +P+H+AA + V+ L+ HGAD+++ G + L +
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAAT 89
Query: 422 NTPSSISSVRKKLDSSISLQDPEAST 447
I V + + ++ QD T
Sbjct: 90 VGHLEIVEVLLEYGADVNAQDKFGKT 115
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 30/129 (23%)
Query: 170 LMLHGHDINFTKDS-YTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQL 228
LM +G D+N D+ TPLH A +++ + L+K+ A +
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV------------------- 73
Query: 229 LLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAEN 288
N ++ G +PLH+AA G + ++ +L+ G ADV+ + K + TA ++ +N
Sbjct: 74 --------NASDSWGRTPLHLAATVGHLEIVEVLLEYG-ADVNAQDKFGK-TAFDISIDN 123
Query: 289 GYVECLRIL 297
G + IL
Sbjct: 124 GNEDLAEIL 132
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 133 REDLLDALHQLGADLSN-DKYGA--LHLAAFNGSIKGCSWLMLHGHDINFTKDSY--TPL 187
++D + L GAD++ D G LHLAA G ++ L+ HG D+N DS+ TPL
Sbjct: 26 QDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ASDSWGRTPL 84
Query: 188 HFAVLGNYVDCAKFLIKNKAHIH 210
H A +++ + L++ A ++
Sbjct: 85 HLAATVGHLEIVEVLLEYGADVN 107
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 77.0 bits (188), Expect = 4e-14, Method: Composition-based stats.
Identities = 43/102 (42%), Positives = 64/102 (62%), Gaps = 2/102 (1%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
A G + +RIL+ N A+ N + PLHLAAK +E +E+LL+ G+ VNASD
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWG 80
Query: 345 RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIA 386
RTPLH L+ + + +E+LL++GA+VNA+D FG + I+
Sbjct: 81 RTPLH--LAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Score = 72.8 bits (177), Expect = 7e-13, Method: Composition-based stats.
Identities = 38/109 (34%), Positives = 67/109 (61%), Gaps = 2/109 (1%)
Query: 327 MEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIA 386
+ +L+ G+ VNA D TPLH + + L + +E+LLK GA+VNA DI+G +P+H+A
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEI--VEVLLKHGADVNASDIWGRTPLHLA 87
Query: 387 ALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLD 435
A + V+ L+ +GAD++++ G +A I + N ++ + +KL+
Sbjct: 88 ATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 262 ILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKC 321
IL + ADV+ + VT LHLAA+ G++E + +LL++ A+ N + + PLHLAA
Sbjct: 32 ILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATV 90
Query: 322 QSVECMEMLLRKGSQVNASDCDNRTPLHASL 352
+E +E+LL G+ VNA D +T S+
Sbjct: 91 GHLEIVEVLLEYGADVNAQDKFGKTAFDISI 121
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 54/85 (63%), Gaps = 2/85 (2%)
Query: 224 DCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALH 283
D V++L++ + N +++ GV+PLH+AA RG + ++ +L G ADV+ R T LH
Sbjct: 28 DEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG-ADVNASDIWGR-TPLH 85
Query: 284 LAAENGYVECLRILLENHANCNERN 308
LAA G++E + +LLE A+ N ++
Sbjct: 86 LAATVGHLEIVEVLLEYGADVNAQD 110
Score = 42.7 bits (99), Expect = 9e-04, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 44/86 (51%)
Query: 362 LEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMR 421
+ IL+ GA+VNA D G +P+H+AA + V+ L+ HGAD+++ G + L +
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAAT 89
Query: 422 NTPSSISSVRKKLDSSISLQDPEAST 447
I V + + ++ QD T
Sbjct: 90 VGHLEIVEVLLEYGADVNAQDKFGKT 115
Score = 38.9 bits (89), Expect = 0.012, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 30/129 (23%)
Query: 170 LMLHGHDINFTKDS-YTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQL 228
LM +G D+N D+ TPLH A +++ + L+K+ A + NA D
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV-----------NASDIW-- 79
Query: 229 LLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAEN 288
G +PLH+AA G + ++ +L+ G ADV+ + K + TA ++ +N
Sbjct: 80 --------------GRTPLHLAATVGHLEIVEVLLEYG-ADVNAQDKFGK-TAFDISIDN 123
Query: 289 GYVECLRIL 297
G + IL
Sbjct: 124 GNEDLAEIL 132
Score = 32.3 bits (72), Expect = 1.2, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 133 REDLLDALHQLGADLSN-DKYGA--LHLAAFNGSIKGCSWLMLHGHDINFTKD-SYTPLH 188
++D + L GAD++ D G LHLAA G ++ L+ HG D+N + TPLH
Sbjct: 26 QDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLH 85
Query: 189 FAVLGNYVDCAKFLIKNKAHIH 210
A +++ + L++ A ++
Sbjct: 86 LAATVGHLEIVEVLLEYGADVN 107
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 39/109 (35%), Positives = 68/109 (62%), Gaps = 2/109 (1%)
Query: 327 MEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIA 386
+ +L+ G+ VNA D TPLH + + L + +E+LLK GA+VNARDI+G +P+H+A
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEI--VEVLLKHGADVNARDIWGRTPLHLA 87
Query: 387 ALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLD 435
A + V+ L+ +GAD++++ G +A I + N ++ + +KL+
Sbjct: 88 ATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 75.1 bits (183), Expect = 2e-13, Method: Composition-based stats.
Identities = 42/102 (41%), Positives = 63/102 (61%), Gaps = 2/102 (1%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
A G + +RIL+ N A+ N + PLHLAAK +E +E+LL+ G+ VNA D
Sbjct: 21 ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWG 80
Query: 345 RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIA 386
RTPLH L+ + + +E+LL++GA+VNA+D FG + I+
Sbjct: 81 RTPLH--LAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDIS 120
Score = 60.8 bits (146), Expect = 3e-09, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 55/91 (60%), Gaps = 1/91 (1%)
Query: 262 ILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKC 321
IL + ADV+ + VT LHLAA+ G++E + +LL++ A+ N R+ + PLHLAA
Sbjct: 32 ILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATV 90
Query: 322 QSVECMEMLLRKGSQVNASDCDNRTPLHASL 352
+E +E+LL G+ VNA D +T S+
Sbjct: 91 GHLEIVEVLLEYGADVNAQDKFGKTAFDISI 121
Score = 55.8 bits (133), Expect = 9e-08, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
Query: 224 DCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALH 283
D V++L++ + N +++ GV+PLH+AA RG + ++ +L G ADV+ + R T LH
Sbjct: 28 DEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG-ADVNARDIWGR-TPLH 85
Query: 284 LAAENGYVECLRILLENHANCNERN 308
LAA G++E + +LLE A+ N ++
Sbjct: 86 LAATVGHLEIVEVLLEYGADVNAQD 110
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 45/86 (52%)
Query: 362 LEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMR 421
+ IL+ GA+VNA D G +P+H+AA + V+ L+ HGAD++++ G + L +
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAAT 89
Query: 422 NTPSSISSVRKKLDSSISLQDPEAST 447
I V + + ++ QD T
Sbjct: 90 VGHLEIVEVLLEYGADVNAQDKFGKT 115
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 30/129 (23%)
Query: 170 LMLHGHDINFTKDS-YTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQL 228
LM +G D+N D+ TPLH A +++ + L+K+ A + NA D
Sbjct: 33 LMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV-----------NARDIW-- 79
Query: 229 LLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAEN 288
G +PLH+AA G + ++ +L+ G ADV+ + K + TA ++ +N
Sbjct: 80 --------------GRTPLHLAATVGHLEIVEVLLEYG-ADVNAQDKFGK-TAFDISIDN 123
Query: 289 GYVECLRIL 297
G + IL
Sbjct: 124 GNEDLAEIL 132
Score = 33.5 bits (75), Expect = 0.57, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 133 REDLLDALHQLGADLSN-DKYGA--LHLAAFNGSIKGCSWLMLHGHDINFTKDSY--TPL 187
++D + L GAD++ D G LHLAA G ++ L+ HG D+N +D + TPL
Sbjct: 26 QDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ARDIWGRTPL 84
Query: 188 HFAVLGNYVDCAKFLIKNKAHIH 210
H A +++ + L++ A ++
Sbjct: 85 HLAATVGHLEIVEVLLEYGADVN 107
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 71/136 (52%), Gaps = 3/136 (2%)
Query: 285 AAENGYVECLRILLE-NHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCD 343
AA+ G VE ++ L NC + ++ PLH AA V +E LL+ G+ V+A D
Sbjct: 17 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 76
Query: 344 NRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGA 403
PLH + S V E+L+K GA VN D++ ++P+H AA + L+ HGA
Sbjct: 77 GLVPLHNACSYGHYEV--AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 134
Query: 404 DISSKTPSGSSALSII 419
D + K G++ L ++
Sbjct: 135 DPTKKNRDGNTPLDLV 150
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 277 RRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQ 336
R+ T LH AA V + LL++ A+ + ++ +PLH A E E+L++ G+
Sbjct: 43 RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV 102
Query: 337 VNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHI 385
VN +D TPLH + +K + ++LL+ GA+ ++ G +P+ +
Sbjct: 103 VNVADLWKFTPLHEAAAKGKYEI--CKLLLQHGADPTKKNRDGNTPLDL 149
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
Query: 217 AVSTNAVDCVQLLLSLQ-INPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTK 275
A V+ V+ L ++Q +N + + +PLH AA +S ++ +L G ADV K K
Sbjct: 17 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG-ADVHAKDK 75
Query: 276 ERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGS 335
V LH A G+ E +L+++ A N + + PLH AA E ++LL+ G+
Sbjct: 76 GGLV-PLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 134
Query: 336 QVNASDCDNRTPL 348
+ D TPL
Sbjct: 135 DPTKKNRDGNTPL 147
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
Query: 146 DLSNDKYGALHLAAFNGSIKGCSWLMLHGHDINFT-KDSYTPLHFAVLGNYVDCAKFLIK 204
D+ + LH AA + +L+ HG D++ K PLH A + + A+ L+K
Sbjct: 39 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 98
Query: 205 NKAHIHE------TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAAD 252
+ A ++ T +H A + + +LLL +P N G +PL + D
Sbjct: 99 HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD 152
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 185 TPLHFAVLGNYVDCAKFLIKNKAHIHE------TIVHSAVSTNAVDCVQLLLSLQINPNV 238
TPLHFA N V ++L+++ A +H +H+A S + +LL+ NV
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 105
Query: 239 LNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKE 276
+ +PLH AA +G K +L G AD K ++
Sbjct: 106 ADLWKFTPLHEAAAKGKYEICKLLLQHG-ADPTKKNRD 142
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 71/136 (52%), Gaps = 3/136 (2%)
Query: 285 AAENGYVECLRILLE-NHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCD 343
AA+ G VE ++ L NC + ++ PLH AA V +E LL+ G+ V+A D
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 74
Query: 344 NRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGA 403
PLH + S V E+L+K GA VN D++ ++P+H AA + L+ HGA
Sbjct: 75 GLVPLHNACSYGHYEV--AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 132
Query: 404 DISSKTPSGSSALSII 419
D + K G++ L ++
Sbjct: 133 DPTKKNRDGNTPLDLV 148
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Query: 277 RRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQ 336
R+ T LH AA V + LL++ A+ + ++ +PLH A E E+L++ G+
Sbjct: 41 RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV 100
Query: 337 VNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHI 385
VN +D TPLH + +K + ++LL+ GA+ ++ G +P+ +
Sbjct: 101 VNVADLWKFTPLHEAAAKGKYEI--CKLLLQHGADPTKKNRDGNTPLDL 147
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
Query: 217 AVSTNAVDCVQLLLSLQ-INPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTK 275
A V+ V+ L ++Q +N + + +PLH AA +S ++ +L G ADV K K
Sbjct: 15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG-ADVHAKDK 73
Query: 276 ERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGS 335
V LH A G+ E +L+++ A N + + PLH AA E ++LL+ G+
Sbjct: 74 GGLV-PLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 132
Query: 336 QVNASDCDNRTPL 348
+ D TPL
Sbjct: 133 DPTKKNRDGNTPL 145
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
Query: 146 DLSNDKYGALHLAAFNGSIKGCSWLMLHGHDINFT-KDSYTPLHFAVLGNYVDCAKFLIK 204
D+ + LH AA + +L+ HG D++ K PLH A + + A+ L+K
Sbjct: 37 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 96
Query: 205 NKAHIHE------TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAAD 252
+ A ++ T +H A + + +LLL +P N G +PL + D
Sbjct: 97 HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD 150
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 185 TPLHFAVLGNYVDCAKFLIKNKAHIHE------TIVHSAVSTNAVDCVQLLLSLQINPNV 238
TPLHFA N V ++L+++ A +H +H+A S + +LL+ NV
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103
Query: 239 LNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKE 276
+ +PLH AA +G K +L G AD K ++
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLLQHG-ADPTKKNRD 140
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 71/136 (52%), Gaps = 3/136 (2%)
Query: 285 AAENGYVECLRILLE-NHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCD 343
AA+ G VE ++ L NC + ++ PLH AA V +E LL+ G+ V+A D
Sbjct: 19 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG 78
Query: 344 NRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGA 403
PLH + S V E+L+K GA VN D++ ++P+H AA + L+ HGA
Sbjct: 79 GLVPLHNACSYGHYEV--AELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 136
Query: 404 DISSKTPSGSSALSII 419
D + K G++ L ++
Sbjct: 137 DPTKKNRDGNTPLDLV 152
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 21/156 (13%)
Query: 243 GVSPLHIAADRGLISCLKAILDSGMADVDIKTK-------------ERRVTALHLAAENG 289
G+S + ADR L+ KA DV+ K R+ T LH AA
Sbjct: 4 GISLGNSEADRQLLEAAKA------GDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYN 57
Query: 290 YVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLH 349
V + LL++ A+ + ++ +PLH A E E+L++ G+ VN +D TPLH
Sbjct: 58 RVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLH 117
Query: 350 ASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHI 385
+ +K + ++LL+ GA+ ++ G +P+ +
Sbjct: 118 EAAAKGKYEI--CKLLLQHGADPTKKNRDGNTPLDL 151
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
Query: 217 AVSTNAVDCVQLLLSLQ-INPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTK 275
A V+ V+ L ++Q +N + + +PLH AA +S ++ +L G ADV K K
Sbjct: 19 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG-ADVHAKDK 77
Query: 276 ERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGS 335
V LH A G+ E +L+++ A N + + PLH AA E ++LL+ G+
Sbjct: 78 GGLV-PLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGA 136
Query: 336 QVNASDCDNRTPL 348
+ D TPL
Sbjct: 137 DPTKKNRDGNTPL 149
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 51/114 (44%), Gaps = 7/114 (6%)
Query: 146 DLSNDKYGALHLAAFNGSIKGCSWLMLHGHDINFT-KDSYTPLHFAVLGNYVDCAKFLIK 204
D+ + LH AA + +L+ HG D++ K PLH A + + A+ L+K
Sbjct: 41 DIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVK 100
Query: 205 NKAHIHE------TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAAD 252
+ A ++ T +H A + + +LLL +P N G +PL + D
Sbjct: 101 HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD 154
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 185 TPLHFAVLGNYVDCAKFLIKNKAHIHE------TIVHSAVSTNAVDCVQLLLSLQINPNV 238
TPLHFA N V ++L+++ A +H +H+A S + +LL+ NV
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 107
Query: 239 LNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKE 276
+ +PLH AA +G K +L G AD K ++
Sbjct: 108 ADLWKFTPLHEAAAKGKYEICKLLLQHG-ADPTKKNRD 144
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 125/261 (47%), Gaps = 33/261 (12%)
Query: 151 KYGALHLAAFNGSIKGCSWLMLHGHDINFT-KDSYTPLHFAVLGNYVDCAKFLIKNKAHI 209
K LHLAA ++ L+ HG D++ K PLH A + + + L+K+ A +
Sbjct: 58 KSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACV 117
Query: 210 HE------TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLI------- 256
+ T +H A S N V+ LLLS +P ++N G S + +A L
Sbjct: 118 NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF 177
Query: 257 ---SCLKAILDSGMADV---------DIKTKERRVTALHLAAENGYV---ECLRILLENH 301
S L+A ++ +A V + K + TALH A + + + +LL
Sbjct: 178 KGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKG 237
Query: 302 ANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLH-ASLSKNILSVH 360
AN NE+N PLH+AA+ + ME+L + G+++NA D +T LH A+L+ ++ +
Sbjct: 238 ANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTC- 296
Query: 361 PLEILLKWGANVNARDIFGYS 381
+LL +G++ + + G++
Sbjct: 297 --RLLLSYGSDPSIISLQGFT 315
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 87/169 (51%), Gaps = 10/169 (5%)
Query: 260 KAILDSGMADVDIK---TKERRVTALHLAAENGYVECLRILLEN-HANCNERNHKEQIPL 315
K+ LD +AD K T E + L AA +G E L LL + NC+ + ++ PL
Sbjct: 5 KSALD--LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPL 62
Query: 316 HLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNAR 375
HLAA V +++LL+ G+ V+A D PLH + S V E+LLK GA VNA
Sbjct: 63 HLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEV--TELLLKHGACVNAM 120
Query: 376 DIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTP 424
D++ ++P+H AA + L+ HGAD + G SA + M TP
Sbjct: 121 DLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSA--VDMAPTP 167
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 63/117 (53%), Gaps = 2/117 (1%)
Query: 277 RRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQ 336
R+ T LHLAA V +++LL++ A+ + ++ +PLH A E E+LL+ G+
Sbjct: 57 RKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC 116
Query: 337 VNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQ 393
VNA D TPLH + SKN + V +LL GA+ + G S + +A EL +
Sbjct: 117 VNAMDLWQFTPLHEAASKNRVEV--CSLLLSHGADPTLVNCHGKSAVDMAPTPELRE 171
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 109/261 (41%), Gaps = 57/261 (21%)
Query: 211 ETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADV 270
+ ++ +A S N + LL L +N + + + +PLH+AA + ++ +L G ADV
Sbjct: 26 DELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG-ADV 84
Query: 271 DIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEML 330
K K V LH A G+ E +LL++ A N + + PLH AA VE +L
Sbjct: 85 HAKDKGGLVP-LHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLL 143
Query: 331 LRKGSQVNASDCDNRTPL--------------------------HASLSK---------- 354
L G+ +C ++ + A L+K
Sbjct: 144 LSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEII 203
Query: 355 --------------NILSVHP-----LEILLKWGANVNARDIFGYSPIHIAALSELSQCV 395
+ S+HP E+LL+ GANVN ++ +P+H+AA + +
Sbjct: 204 NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVM 263
Query: 396 DCLIMHGADISSKTPSGSSAL 416
+ L HGA +++ G +AL
Sbjct: 264 EVLHKHGAKMNALDSLGQTAL 284
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 135 DLLDALHQLGADLSN-DKYG--ALHLAAFNGSIKGCSWLMLHGHD 176
D+++ LH+ GA ++ D G ALH AA G ++ C L+ +G D
Sbjct: 261 DVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSD 305
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 40/93 (43%), Positives = 63/93 (67%), Gaps = 2/93 (2%)
Query: 243 GVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHA 302
G +PLH+AA G + +K +L++G ADV+ K K R T LHLAA NG++E +++LLE A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAGA 59
Query: 303 NCNERNHKEQIPLHLAAKCQSVECMEMLLRKGS 335
+ N ++ + PLHLAA+ +E +++LL G+
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 75.1 bits (183), Expect = 2e-13, Method: Composition-based stats.
Identities = 39/91 (42%), Positives = 60/91 (65%), Gaps = 2/91 (2%)
Query: 280 TALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNA 339
T LHLAA NG++E +++LLE A+ N ++ + PLHLAA+ +E +++LL G+ VNA
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 340 SDCDNRTPLHASLSKNILSVHPLEILLKWGA 370
D + RTPLH + L V +++LL+ GA
Sbjct: 64 KDKNGRTPLHLAARNGHLEV--VKLLLEAGA 92
Score = 68.9 bits (167), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/92 (41%), Positives = 59/92 (64%), Gaps = 2/92 (2%)
Query: 312 QIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGAN 371
+ PLHLAA+ +E +++LL G+ VNA D + RTPLH + L V +++LL+ GA+
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV--VKLLLEAGAD 60
Query: 372 VNARDIFGYSPIHIAALSELSQCVDCLIMHGA 403
VNA+D G +P+H+AA + + V L+ GA
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 62.8 bits (151), Expect = 9e-10, Method: Composition-based stats.
Identities = 37/91 (40%), Positives = 56/91 (61%), Gaps = 2/91 (2%)
Query: 212 TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVD 271
T +H A ++ V+LLL + N + G +PLH+AA G + +K +L++G ADV+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVN 62
Query: 272 IKTKERRVTALHLAAENGYVECLRILLENHA 302
K K R T LHLAA NG++E +++LLE A
Sbjct: 63 AKDKNGR-TPLHLAARNGHLEVVKLLLEAGA 92
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 50/80 (62%), Gaps = 2/80 (2%)
Query: 343 DNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHG 402
+ RTPLH + L V +++LL+ GA+VNA+D G +P+H+AA + + V L+ G
Sbjct: 1 NGRTPLHLAARNGHLEV--VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 403 ADISSKTPSGSSALSIIMRN 422
AD+++K +G + L + RN
Sbjct: 59 ADVNAKDKNGRTPLHLAARN 78
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 6/88 (6%)
Query: 185 TPLHFAVLGNYVDCAKFLIKNKAHIH------ETIVHSAVSTNAVDCVQLLLSLQINPNV 238
TPLH A +++ K L++ A ++ T +H A ++ V+LLL + N
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 239 LNNKGVSPLHIAADRGLISCLKAILDSG 266
+ G +PLH+AA G + +K +L++G
Sbjct: 64 KDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 135 DLLDALHQLGADL-SNDKYG--ALHLAAFNGSIKGCSWLMLHGHDINFT-KDSYTPLHFA 190
+++ L + GAD+ + DK G LHLAA NG ++ L+ G D+N K+ TPLH A
Sbjct: 16 EVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLA 75
Query: 191 VLGNYVDCAKFLIKNKAH 208
+++ K L++ A+
Sbjct: 76 ARNGHLEVVKLLLEAGAY 93
Score = 33.1 bits (74), Expect = 0.63, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 36/69 (52%)
Query: 379 GYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSSI 438
G +P+H+AA + + V L+ GAD+++K +G + L + RN + + + + +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 439 SLQDPEAST 447
+ +D T
Sbjct: 62 NAKDKNGRT 70
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 73.6 bits (179), Expect = 4e-13, Method: Composition-based stats.
Identities = 42/102 (41%), Positives = 62/102 (60%), Gaps = 2/102 (1%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
AA G + +RIL N A+ N ++ PLHLAA +E +E+LL+ G+ VNA+
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTG 80
Query: 345 RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIA 386
RTPLH + + L + +E+LLK GA+VNA+D FG + I+
Sbjct: 81 RTPLHLAAWADHLEI--VEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 39/117 (33%), Positives = 69/117 (58%), Gaps = 2/117 (1%)
Query: 318 AAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDI 377
AA+ + + +L G+ VNA+D TPLH L+ + + +E+LLK GA+VNA
Sbjct: 21 AARAGQDDEVRILTANGADVNANDYWGHTPLH--LAAMLGHLEIVEVLLKNGADVNATGN 78
Query: 378 FGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKL 434
G +P+H+AA ++ + V+ L+ HGAD++++ G +A I + N ++ + +KL
Sbjct: 79 TGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 45/73 (61%)
Query: 280 TALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNA 339
T LHLAA G++E + +LL+N A+ N + + PLHLAA +E +E+LL+ G+ VNA
Sbjct: 49 TPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNA 108
Query: 340 SDCDNRTPLHASL 352
D +T S+
Sbjct: 109 QDKFGKTAFDISI 121
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 47/86 (54%)
Query: 362 LEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMR 421
+ IL GA+VNA D +G++P+H+AA+ + V+ L+ +GAD+++ +G + L +
Sbjct: 30 VRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAW 89
Query: 422 NTPSSISSVRKKLDSSISLQDPEAST 447
I V K + ++ QD T
Sbjct: 90 ADHLEIVEVLLKHGADVNAQDKFGKT 115
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 224 DCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALH 283
D V++L + + N + G +PLH+AA G + ++ +L +G ADV+ R T LH
Sbjct: 28 DEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNG-ADVNATGNTGR-TPLH 85
Query: 284 LAAENGYVECLRILLENHANCNERN 308
LAA ++E + +LL++ A+ N ++
Sbjct: 86 LAAWADHLEIVEVLLKHGADVNAQD 110
Score = 36.6 bits (83), Expect = 0.068, Method: Composition-based stats.
Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 30/129 (23%)
Query: 170 LMLHGHDINFTKD-SYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQL 228
L +G D+N +TPLH A + +++ + L+KN A ++ T
Sbjct: 33 LTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNAT---------------- 76
Query: 229 LLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAEN 288
N G +PLH+AA + ++ +L G ADV+ + K + TA ++ +N
Sbjct: 77 -----------GNTGRTPLHLAAWADHLEIVEVLLKHG-ADVNAQDKFGK-TAFDISIDN 123
Query: 289 GYVECLRIL 297
G + IL
Sbjct: 124 GNEDLAEIL 132
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 78/146 (53%), Gaps = 3/146 (2%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
AA G + +RIL+ N A + PLHLAA+ E+LLR G +A +
Sbjct: 9 AARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD 67
Query: 345 RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGAD 404
RTPLH + S+ ++ +E+LLK GA+VNA+D+ + +H A + V+ LI +GAD
Sbjct: 68 RTPLHMAASEGHANI--VEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD 125
Query: 405 ISSKTPSGSSALSIIMRNTPSSISSV 430
+ +++ +A I + N ++ +
Sbjct: 126 VHTQSKFCKTAFDISIDNGNEDLAEI 151
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 282 LHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASD 341
LHLAA+ G+ +LL + + R ++ PLH+AA +E+LL+ G+ VNA D
Sbjct: 38 LHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKD 97
Query: 342 CDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIF 378
T LH + N V +E+L+K+GA+V+ + F
Sbjct: 98 MLKMTALHWATEHNHQEV--VELLIKYGADVHTQSKF 132
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 57/96 (59%), Gaps = 2/96 (2%)
Query: 243 GVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHA 302
G SPLH+AA G S + +L +G++ D +TK R T LH+AA G+ + +LL++ A
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVS-RDARTKVDR-TPLHMAASEGHANIVEVLLKHGA 91
Query: 303 NCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVN 338
+ N ++ + LH A + E +E+L++ G+ V+
Sbjct: 92 DVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH 127
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 214 VHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIK 273
+H A ++LL ++ + +PLH+AA G + ++ +L G ADV+ K
Sbjct: 38 LHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHG-ADVNAK 96
Query: 274 TKERRVTALHLAAENGYVECLRILLENHANCNERN 308
++TALH A E+ + E + +L++ A+ + ++
Sbjct: 97 DM-LKMTALHWATEHNHQEVVELLIKYGADVHTQS 130
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 125 LLWCVFVKREDLLDALHQLGADLSNDKYGA--LHLAAFNGSIKGCSWLMLHGHDINF-TK 181
LL ++D + L GA + D G LHLAA G L+ G + TK
Sbjct: 6 LLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK 65
Query: 182 DSYTPLHFAVLGNYVDCAKFLIKNKAHIHE------TIVHSAVSTNAVDCVQLLL 230
TPLH A + + + L+K+ A ++ T +H A N + V+LL+
Sbjct: 66 VDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 102/213 (47%), Gaps = 35/213 (16%)
Query: 153 GALHLAA-FNGSIKGCSWLMLHGHDINFTK-DSYTPLHFAVLGNYVDCAKFLIKNKAHIH 210
GA+ LAA +G + L+ G DIN+ D T LH A + + VD KFL++N A+I+
Sbjct: 41 GAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANIN 100
Query: 211 ETI------VHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAA------------- 251
+ +H+A S +D + L+S + +N++G +PL IA
Sbjct: 101 QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN 160
Query: 252 -------------DRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILL 298
+R ++ + L+SG + D++ + TALH+AA GY E L++L+
Sbjct: 161 RQGVDIEAARKEEERIMLRDARQWLNSGHIN-DVRHAKSGGTALHVAAAKGYTEVLKLLI 219
Query: 299 ENHANCNERNHKEQIPLHLAAKCQSVECMEMLL 331
+ + N +++ PLH AA E +L+
Sbjct: 220 QARYDVNIKDYDGWTPLHAAAHWGKEEACRILV 252
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 279 VTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVN 338
+TALH A + V+ ++ L+EN AN N+ +++ IPLH AA C ++ E L+ +G+ V
Sbjct: 74 LTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG 133
Query: 339 ASDCDNRTPL 348
A + + TPL
Sbjct: 134 AVNSEGDTPL 143
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 6/103 (5%)
Query: 319 AKCQSVECMEML--LRKGSQVNASDCDNRTPLH-ASLSKNILSVHPLEILLKWGANVNAR 375
A C S + E+L L +G+ +N ++ D T LH A + N+ V + L++ GAN+N
Sbjct: 46 AACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMV---KFLVENGANINQP 102
Query: 376 DIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSI 418
D G+ P+H AA + LI GA + + G + L I
Sbjct: 103 DNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
A +G E + LLE A+ N N LH A +V+ ++ L+ G+ +N D +
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEG 106
Query: 345 RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHI 385
PLHA+ S L + E L+ GA+V A + G +P+ I
Sbjct: 107 WIPLHAAASCGYLDI--AEYLISQGAHVGAVNSEGDTPLDI 145
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 70.5 bits (171), Expect = 4e-12, Method: Composition-based stats.
Identities = 39/118 (33%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
Query: 318 AAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDI 377
AA+ + + +L+ G+ VNA D TPLH + + L + +E+LLK GA+VNA D
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEI--VEVLLKNGADVNAIDA 78
Query: 378 FGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLD 435
G +P+H+ A+ + V+ L+ HGAD++++ G +A I + N ++ + +KL+
Sbjct: 79 IGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
Score = 69.7 bits (169), Expect = 6e-12, Method: Composition-based stats.
Identities = 42/102 (41%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
AA G + +RIL+ N A+ N + PLHLAA +E +E+LL+ G+ VNA D
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG 80
Query: 345 RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIA 386
TPLH L + +E+LLK GA+VNA+D FG + I+
Sbjct: 81 ETPLHLVAMYGHLEI--VEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 56.6 bits (135), Expect = 6e-08, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 1/91 (1%)
Query: 262 ILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKC 321
IL + ADV+ + K +T LHLAA N ++E + +LL+N A+ N + + PLHL A
Sbjct: 32 ILMANGADVNAEDKVG-LTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMY 90
Query: 322 QSVECMEMLLRKGSQVNASDCDNRTPLHASL 352
+E +E+LL+ G+ VNA D +T S+
Sbjct: 91 GHLEIVEVLLKHGADVNAQDKFGKTAFDISI 121
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 48/86 (55%)
Query: 362 LEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMR 421
+ IL+ GA+VNA D G +P+H+AA+++ + V+ L+ +GAD+++ G + L ++
Sbjct: 30 VRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAM 89
Query: 422 NTPSSISSVRKKLDSSISLQDPEAST 447
I V K + ++ QD T
Sbjct: 90 YGHLEIVEVLLKHGADVNAQDKFGKT 115
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 30/129 (23%)
Query: 170 LMLHGHDINFT-KDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQL 228
LM +G D+N K TPLH A + ++++ + L+KN A + NA+D +
Sbjct: 33 LMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADV-----------NAIDAI-- 79
Query: 229 LLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAEN 288
G +PLH+ A G + ++ +L G ADV+ + K + TA ++ +N
Sbjct: 80 --------------GETPLHLVAMYGHLEIVEVLLKHG-ADVNAQDKFGK-TAFDISIDN 123
Query: 289 GYVECLRIL 297
G + IL
Sbjct: 124 GNEDLAEIL 132
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 70.1 bits (170), Expect = 5e-12, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
Query: 318 AAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDI 377
AA+ + + +L+ G+ VNA D TPL+ + + L + +E+LLK GA+VNA D
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEI--VEVLLKNGADVNAVDA 78
Query: 378 FGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLD 435
G++P+H+AA + + L+ HGAD++++ G +A I + N ++ + +KL+
Sbjct: 79 IGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136
Score = 67.4 bits (163), Expect = 3e-11, Method: Composition-based stats.
Identities = 41/102 (40%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
AA G + +RIL+ N A+ N ++ PL+LA +E +E+LL+ G+ VNA D
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIG 80
Query: 345 RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIA 386
TPLH L+ I + E+LLK GA+VNA+D FG + I+
Sbjct: 81 FTPLH--LAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDIS 120
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 262 ILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKC 321
IL + ADV+ K E +T L+LA +G++E + +LL+N A+ N + PLHLAA
Sbjct: 32 ILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI 90
Query: 322 QSVECMEMLLRKGSQVNASDCDNRTPLHASL 352
+E E+LL+ G+ VNA D +T S+
Sbjct: 91 GHLEIAEVLLKHGADVNAQDKFGKTAFDISI 121
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 32/130 (24%)
Query: 170 LMLHGHDINFTKDSY--TPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQ 227
LM +G D+N KD Y TPL+ A +++ + L+KN A + NAVD +
Sbjct: 33 LMANGADVN-AKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-----------NAVDAI- 79
Query: 228 LLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAE 287
G +PLH+AA G + + +L G ADV+ + K + TA ++
Sbjct: 80 ---------------GFTPLHLAAFIGHLEIAEVLLKHG-ADVNAQDKFGK-TAFDISIG 122
Query: 288 NGYVECLRIL 297
NG + IL
Sbjct: 123 NGNEDLAEIL 132
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 46/86 (53%)
Query: 362 LEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMR 421
+ IL+ GA+VNA+D +G +P+++A + V+ L+ +GAD+++ G + L +
Sbjct: 30 VRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAF 89
Query: 422 NTPSSISSVRKKLDSSISLQDPEAST 447
I+ V K + ++ QD T
Sbjct: 90 IGHLEIAEVLLKHGADVNAQDKFGKT 115
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 8/177 (4%)
Query: 181 KDSYTPLHFAVLGNYVDCAKFLIK------NKAHIHETIVHSAVSTNAVDCVQLLLSLQI 234
+DS T LH+A + + +FL++ +K + +H A S + V+ LL
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 97
Query: 235 NPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECL 294
N +N G +PLH AA + +L+ G A+ D K TA+H AA G ++ +
Sbjct: 98 QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG-ANPDAK-DHYEATAMHRAAAKGNLKMI 155
Query: 295 RILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHAS 351
ILL A+ N ++ + PLHLA + VE ++L+ +G+ + + + +TPL +
Sbjct: 156 HILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 212
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 98/192 (51%), Gaps = 6/192 (3%)
Query: 259 LKAILDSGMADVDI--KTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLH 316
L+ + +S +AD + +T + TALH A G+ E + LL+ N+++ PLH
Sbjct: 19 LEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLH 78
Query: 317 LAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEI-LLKWGANVNAR 375
+AA E ++ LL KG+QVNA + + TPLH + SKN H + + LL+ GAN +A+
Sbjct: 79 IAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKN---RHEIAVMLLEGGANPDAK 135
Query: 376 DIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLD 435
D + + +H AA + + L+ + A + + G++ L + + +
Sbjct: 136 DHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG 195
Query: 436 SSISLQDPEAST 447
+SI +++ E T
Sbjct: 196 ASIYIENKEEKT 207
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 8/177 (4%)
Query: 181 KDSYTPLHFAVLGNYVDCAKFLIK------NKAHIHETIVHSAVSTNAVDCVQLLLSLQI 234
+DS T LH+A + + +FL++ +K + +H A S + V+ LL
Sbjct: 39 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 98
Query: 235 NPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECL 294
N +N G +PLH AA + +L+ G A+ D K TA+H AA G ++ +
Sbjct: 99 QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG-ANPDAK-DHYEATAMHRAAAKGNLKMI 156
Query: 295 RILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHAS 351
ILL A+ N ++ + PLHLA + VE ++L+ +G+ + + + +TPL +
Sbjct: 157 HILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA 213
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/163 (31%), Positives = 88/163 (53%), Gaps = 6/163 (3%)
Query: 259 LKAILDSGMADVDI--KTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLH 316
L+ + +S +AD + +T + TALH A G+ E + LL+ N+++ PLH
Sbjct: 20 LEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLH 79
Query: 317 LAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEI-LLKWGANVNAR 375
+AA E ++ LL KG+QVNA + + TPLH + SKN H + + LL+ GAN +A+
Sbjct: 80 IAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKN---RHEIAVMLLEGGANPDAK 136
Query: 376 DIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSI 418
D + + +H AA + + L+ + A + + G++ L +
Sbjct: 137 DHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHL 179
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 2/136 (1%)
Query: 312 QIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGAN 371
+ LH A E +E LL+ G VN D +PLH + S + ++ LL GA
Sbjct: 42 RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEI--VKALLGKGAQ 99
Query: 372 VNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVR 431
VNA + G +P+H AA + L+ GA+ +K ++A+ + +
Sbjct: 100 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL 159
Query: 432 KKLDSSISLQDPEAST 447
+S ++QD E +T
Sbjct: 160 LYYKASTNIQDTEGNT 175
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 4/175 (2%)
Query: 212 TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVD 271
T +H A S + V+ LL L + N ++ G SPLHIAA G +KA+L G A V+
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKG-AHVN 100
Query: 272 IKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLL 331
+ T LH AA E +LLE AN + ++H + +H AA +++ + +LL
Sbjct: 101 A-VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL 159
Query: 332 RKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIA 386
+ N D + TPLH + + V + L+ GA++ + +P+ +A
Sbjct: 160 FYKASTNIQDTEGNTPLHLACDEE--RVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 94/196 (47%), Gaps = 4/196 (2%)
Query: 273 KTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLR 332
+T + TALH A G+ E + LL+ N+++ PLH+AA E ++ LL
Sbjct: 35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLV 94
Query: 333 KGSQVNASDCDNRTPLHASLSKNILSVHPLEI-LLKWGANVNARDIFGYSPIHIAALSEL 391
KG+ VNA + + TPLH + SKN H + + LL+ GAN +A+D + + +H AA
Sbjct: 95 KGAHVNAVNQNGCTPLHYAASKN---RHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGN 151
Query: 392 SQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSSISLQDPEASTKDIE 451
+ V L+ + A + + G++ L + + +SI +++ E T
Sbjct: 152 LKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQV 211
Query: 452 LKLNFKYILQNGPDGE 467
K IL+ +GE
Sbjct: 212 AKGGLGLILKRLAEGE 227
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 8/177 (4%)
Query: 181 KDSYTPLHFAVLGNYVDCAKFLIK------NKAHIHETIVHSAVSTNAVDCVQLLLSLQI 234
+DS T LH+A + + +FL++ +K + +H A S + V+ LL
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGA 97
Query: 235 NPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECL 294
+ N +N G +PLH AA + +L+ G A+ D K TA+H AA G ++ +
Sbjct: 98 HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG-ANPDAK-DHYDATAMHRAAAKGNLKMV 155
Query: 295 RILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHAS 351
ILL A+ N ++ + PLHLA + VE + L+ +G+ + + + +TPL +
Sbjct: 156 HILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 88/180 (48%), Gaps = 14/180 (7%)
Query: 111 TLFSKASQAEKTTALLWCVFVKREDLLDALHQLGADLSNDK----YGALHLAAFNGSIKG 166
+L ++ Q + TAL W ++++ L QLG + NDK + LH+AA G +
Sbjct: 31 SLATRTDQ-DSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGXDEI 88
Query: 167 CSWLMLHGHDIN-FTKDSYTPLHFAVLGNYVDCAKFLIKNKA------HIHETIVHSAVS 219
L++ G +N ++ TPLH+A N + A L++ A H T +H A +
Sbjct: 89 VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAA 148
Query: 220 TNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRV 279
+ V +LL + + N+ + +G +PLH+A D + K ++ G A + I+ KE +
Sbjct: 149 KGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG-ASIYIENKEEKT 207
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 325 ECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIH 384
E E +L S +D D+RT LH + S + +E LL+ G VN +D G+SP+H
Sbjct: 21 ELKERILADKSLATRTDQDSRTALHWACSAGHTEI--VEFLLQLGVPVNDKDDAGWSPLH 78
Query: 385 IAALSELSQCVDCLIMHGADISSKTPSGSSAL 416
IAA + + V L++ GA +++ +G + L
Sbjct: 79 IAASAGXDEIVKALLVKGAHVNAVNQNGCTPL 110
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 86/175 (49%), Gaps = 4/175 (2%)
Query: 212 TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVD 271
T +H A S + V+ LL L + N ++ G SPLHIAA G +KA+L G A V+
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKG-AHVN 100
Query: 272 IKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLL 331
+ T LH AA E +LLE AN + ++H + +H AA +++ + +LL
Sbjct: 101 A-VNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL 159
Query: 332 RKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIA 386
+ N D + TPLH + + V + L+ GA++ + +P+ +A
Sbjct: 160 FYKASTNIQDTEGNTPLHLACDEE--RVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 94/196 (47%), Gaps = 4/196 (2%)
Query: 273 KTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLR 332
+T + TALH A G+ E + LL+ N+++ PLH+AA E ++ LL
Sbjct: 35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLV 94
Query: 333 KGSQVNASDCDNRTPLHASLSKNILSVHPLEI-LLKWGANVNARDIFGYSPIHIAALSEL 391
KG+ VNA + + TPLH + SKN H + + LL+ GAN +A+D + + +H AA
Sbjct: 95 KGAHVNAVNQNGCTPLHYAASKN---RHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGN 151
Query: 392 SQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSSISLQDPEASTKDIE 451
+ V L+ + A + + G++ L + + +SI +++ E T
Sbjct: 152 LKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQV 211
Query: 452 LKLNFKYILQNGPDGE 467
K IL+ +GE
Sbjct: 212 AKGGLGLILKRLAEGE 227
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 8/177 (4%)
Query: 181 KDSYTPLHFAVLGNYVDCAKFLIK------NKAHIHETIVHSAVSTNAVDCVQLLLSLQI 234
+DS T LH+A + + +FL++ +K + +H A S + V+ LL
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGA 97
Query: 235 NPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECL 294
+ N +N G +PLH AA + +L+ G A+ D K TA+H AA G ++ +
Sbjct: 98 HVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG-ANPDAK-DHYDATAMHRAAAKGNLKMV 155
Query: 295 RILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHAS 351
ILL A+ N ++ + PLHLA + VE + L+ +G+ + + + +TPL +
Sbjct: 156 HILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA 212
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 88/180 (48%), Gaps = 14/180 (7%)
Query: 111 TLFSKASQAEKTTALLWCVFVKREDLLDALHQLGADLSNDK----YGALHLAAFNGSIKG 166
+L ++ Q + TAL W ++++ L QLG + NDK + LH+AA G +
Sbjct: 31 SLATRTDQ-DSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASAGRDEI 88
Query: 167 CSWLMLHGHDIN-FTKDSYTPLHFAVLGNYVDCAKFLIKNKA------HIHETIVHSAVS 219
L++ G +N ++ TPLH+A N + A L++ A H T +H A +
Sbjct: 89 VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAA 148
Query: 220 TNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRV 279
+ V +LL + + N+ + +G +PLH+A D + K ++ G A + I+ KE +
Sbjct: 149 KGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG-ASIYIENKEEKT 207
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 325 ECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIH 384
E E +L S +D D+RT LH + S + +E LL+ G VN +D G+SP+H
Sbjct: 21 ELKERILADKSLATRTDQDSRTALHWACSAGHTEI--VEFLLQLGVPVNDKDDAGWSPLH 78
Query: 385 IAALSELSQCVDCLIMHGADISSKTPSGSSAL 416
IAA + + V L++ GA +++ +G + L
Sbjct: 79 IAASAGRDEIVKALLVKGAHVNAVNQNGCTPL 110
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 67.0 bits (162), Expect = 5e-11, Method: Composition-based stats.
Identities = 41/96 (42%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Query: 280 TALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNA 339
T LH AA+NG+ E ++ LL A+ N R+ PLHLAAK E +++LL KG+ VNA
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70
Query: 340 SDCDNRTPLHASLSKNILSVHPLEILLKWGANVNAR 375
D TP H L+K +++L GA+VNAR
Sbjct: 71 RSKDGNTPEH--LAKKNGHHEIVKLLDAKGADVNAR 104
Score = 59.3 bits (142), Expect = 8e-09, Method: Composition-based stats.
Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 2/96 (2%)
Query: 314 PLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVN 373
PLH AAK E ++ LL KG+ VNA D TPLH + + +++LL GA+VN
Sbjct: 12 PLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEI--VKLLLAKGADVN 69
Query: 374 ARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKT 409
AR G +P H+A + + V L GAD+++++
Sbjct: 70 ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 50.4 bits (119), Expect = 4e-06, Method: Composition-based stats.
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 212 TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVD 271
T +H+A + V+ LLS + N + G +PLH+AA G +K +L G ADV+
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG-ADVN 69
Query: 272 IKTKERRVTALHLAAENGYVECLRILLENHANCNERN 308
++K+ T HLA +NG+ E +++L A+ N R+
Sbjct: 70 ARSKDGN-TPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 6/82 (7%)
Query: 343 DNRTPLHASLSKNILSVHPLEI--LLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIM 400
D TPLH + +KN H E+ LL GA+VNAR G +P+H+AA + ++ V L+
Sbjct: 8 DGNTPLHNA-AKN---GHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLA 63
Query: 401 HGADISSKTPSGSSALSIIMRN 422
GAD+++++ G++ + +N
Sbjct: 64 KGADVNARSKDGNTPEHLAKKN 85
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 29/128 (22%)
Query: 148 SNDKYGALHLAAFNGSIKGCSWLMLHGHDINF-TKDSYTPLHFAVLGNYVDCAKFLIKNK 206
S D LH AA NG + L+ G D+N +KD TPLH A + + K L+
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 207 AHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSG 266
A + N + G +P H+A G +K +LD+
Sbjct: 66 ADV---------------------------NARSKDGNTPEHLAKKNGHHEIVK-LLDAK 97
Query: 267 MADVDIKT 274
ADV+ ++
Sbjct: 98 GADVNARS 105
Score = 30.4 bits (67), Expect = 4.3, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 30/49 (61%)
Query: 379 GYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSI 427
G +P+H AA + ++ V L+ GAD+++++ G++ L + +N + I
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEI 57
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 56/183 (30%), Positives = 87/183 (47%), Gaps = 11/183 (6%)
Query: 183 SYTPLHFAVLGNYVDCAKFLIKNKAHI-------HETIVHSAVSTNAVDCVQLLLSLQIN 235
S PLH A + N + L+ +K + +H +VS A + LLS N
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61
Query: 236 PNV---LNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVE 292
N+ ++ G +P HIA G + +K++ D + K + VT LHLA + E
Sbjct: 62 VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 293 CLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKG-SQVNASDCDNRTPLHAS 351
+ L+EN A+ ++ QIPLH AA S++ +E+L G S VN D TPL +
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 352 LSK 354
L++
Sbjct: 182 LAE 184
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 176 DIN-FTKDSYTPLHFAVLGNYVDCAKFLIKNKAHI------HETIVHSAVSTNAVDCVQL 228
D+N T T LH AV + + ++FLI+N A + ++ +H A S ++ ++L
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL 158
Query: 229 LLSLQINP-NVLNNKGVSPLHIAADRG 254
L L + N + +G +PL A G
Sbjct: 159 LCGLGKSAVNWQDKQGWTPLFHALAEG 185
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 74/145 (51%), Gaps = 4/145 (2%)
Query: 214 VHSAVSTNAVDCVQLLLSLQINPNV---LNNKGVSPLHIAADRGLISCLKAILDSGMADV 270
+H +VS A + LLS N N+ ++ G +P HIA G + +K++ D +
Sbjct: 40 LHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD 99
Query: 271 DIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEML 330
K + VT LHLA + E + L+EN A+ ++ QIPLH AA S++ +E+L
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
Query: 331 LRKG-SQVNASDCDNRTPLHASLSK 354
G S VN D TPL +L++
Sbjct: 160 CGLGKSAVNWQDKQGWTPLFHALAE 184
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 176 DIN-FTKDSYTPLHFAVLGNYVDCAKFLIKNKAHI------HETIVHSAVSTNAVDCVQL 228
D+N T T LH AV + + ++FLI+N A + ++ +H A S ++ ++L
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL 158
Query: 229 LLSLQINP-NVLNNKGVSPLHIAADRG 254
L L + N + +G +PL A G
Sbjct: 159 LCGLGKSAVNWQDKQGWTPLFHALAEG 185
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 65.9 bits (159), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 74/145 (51%), Gaps = 4/145 (2%)
Query: 214 VHSAVSTNAVDCVQLLLSLQINPNV---LNNKGVSPLHIAADRGLISCLKAILDSGMADV 270
+H +VS A + LLS N N+ ++ G +P HIA G + +K++ D +
Sbjct: 40 LHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD 99
Query: 271 DIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEML 330
K + VT LHLA + E + L+EN A+ ++ QIPLH AA S++ +E+L
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
Query: 331 LRKG-SQVNASDCDNRTPLHASLSK 354
G S VN D TPL +L++
Sbjct: 160 CGLGKSAVNWQDKQGWTPLFHALAE 184
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 176 DIN-FTKDSYTPLHFAVLGNYVDCAKFLIKNKAHI------HETIVHSAVSTNAVDCVQL 228
D+N T T LH AV + + ++FLI+N A + ++ +H A S ++ ++L
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL 158
Query: 229 LLSLQINP-NVLNNKGVSPLHIAADRG 254
L L + N + +G +PL A G
Sbjct: 159 LCGLGKSAVNWQDKQGWTPLFHALAEG 185
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 47/174 (27%), Positives = 88/174 (50%), Gaps = 4/174 (2%)
Query: 274 TKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRK 333
T + + LH+AA +G + + +LL++ AN RN + +PLHLA + + ++ LL
Sbjct: 82 TSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDS 141
Query: 334 GSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQ 393
++ N D TPL + S + + +LL+ GA++NA + G + +H A + +
Sbjct: 142 NAKPNKKDLSGNTPLIYACSGGHHEL--VALLLQHGASINASNNKGNTALHEAVIEKHVF 199
Query: 394 CVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSSISLQDPEAST 447
V+ L++HGA + +A+ +N S I + + + S ++ D A T
Sbjct: 200 VVELLLLHGASVQVLNKRQRTAVDCAEQN--SKIMELLQVVPSCVASLDDVAET 251
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 45/137 (32%), Positives = 75/137 (54%), Gaps = 6/137 (4%)
Query: 237 NVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRI 296
NV + G SPLH+AA G + +L G A+ + ++ V LHLA + G+ + ++
Sbjct: 80 NVTSQDGSSPLHVAALHGRADLIPLLLKHG-ANAGARNADQAV-PLHLACQQGHFQVVKC 137
Query: 297 LLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLH-ASLSKN 355
LL+++A N+++ PL A E + +LL+ G+ +NAS+ T LH A + K+
Sbjct: 138 LLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKH 197
Query: 356 ILSVHPLEILLKWGANV 372
+ V E+LL GA+V
Sbjct: 198 VFVV---ELLLLHGASV 211
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 8/136 (5%)
Query: 214 VHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIK 273
+H A D + LLL N N PLH+A +G +K +LDS + K
Sbjct: 90 LHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDS-----NAK 144
Query: 274 TKERRV---TALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEML 330
++ + T L A G+ E + +LL++ A+ N N+K LH A + V +E+L
Sbjct: 145 PNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELL 204
Query: 331 LRKGSQVNASDCDNRT 346
L G+ V + RT
Sbjct: 205 LLHGASVQVLNKRQRT 220
Score = 33.9 bits (76), Expect = 0.42, Method: Composition-based stats.
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 12/150 (8%)
Query: 133 REDLLDALHQLGADL---SNDKYGALHLAAFNGSIKGCSWLMLHGHDINFTKD--SYTPL 187
R DL+ L + GA+ + D+ LHLA G + L+ N KD TPL
Sbjct: 98 RADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN-KKDLSGNTPL 156
Query: 188 HFAVLGNYVDCAKFLIKNKAHIH------ETIVHSAVSTNAVDCVQLLLSLQINPNVLNN 241
+A G + + L+++ A I+ T +H AV V V+LLL + VLN
Sbjct: 157 IYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNK 216
Query: 242 KGVSPLHIAADRGLISCLKAILDSGMADVD 271
+ + + A I L ++ S +A +D
Sbjct: 217 RQRTAVDCAEQNSKIMELLQVVPSCVASLD 246
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 369 GANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSI 418
G NV ++D G SP+H+AAL + + L+ HGA+ ++ + L +
Sbjct: 78 GVNVTSQD--GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHL 125
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 64/114 (56%), Gaps = 2/114 (1%)
Query: 270 VDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEM 329
+D T R T LH+A+ G + + LL+N ++ N ++H PLH A ++ +E+
Sbjct: 2 IDPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVEL 61
Query: 330 LLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPI 383
LL+ + VN + N +PLH + + + +++LL +GA+ NA +IFG P+
Sbjct: 62 LLQHKALVNTTGYQNDSPLHDAAKNGHVDI--VKLLLSYGASRNAVNIFGLRPV 113
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
Query: 155 LHLAAFNGSIKGCSWLMLHGHDINFTKDS-YTPLHFAVLGNYVDCAKFLIKNKAHIHET- 212
LH+A+ G I +L+ +G D N + +TPLH A ++ + L+++KA ++ T
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTG 73
Query: 213 -----IVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCL 259
+H A VD V+LLLS + N +N G+ P+ D + S L
Sbjct: 74 YQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLL 125
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 2/96 (2%)
Query: 308 NHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLK 367
NH+ + LH+A+ + +E LL+ GS N D TPLH + + L V +E+LL+
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKV--VELLLQ 64
Query: 368 WGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGA 403
A VN SP+H AA + V L+ +GA
Sbjct: 65 HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGA 100
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 208 HIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGM 267
H ET++H A + V+ LL +PNV ++ G +PLH A + G + ++ +L
Sbjct: 8 HRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH-K 66
Query: 268 ADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERN 308
A V+ T + + LH AA+NG+V+ +++LL A+ N N
Sbjct: 67 ALVNT-TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 185 TPLHFAVLGNYVDCAKFLIKN------KAHIHETIVHSAVSTNAVDCVQLLLSLQINPNV 238
T LH A + + ++L++N K H T +H A + + V+LLL + N
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT 71
Query: 239 LNNKGVSPLHIAADRGLISCLKAILDSGMA 268
+ SPLH AA G + +K +L G +
Sbjct: 72 TGYQNDSPLHDAAKNGHVDIVKLLLSYGAS 101
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 212 TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVD 271
T +H+AV + D V+LLL +P + G +P +AA G + LK L G ADV+
Sbjct: 41 TPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKG-ADVN 99
Query: 272 IKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHL----------AAKC 321
+ TA AA G V+ L+ L + AN N R ++ L AA+
Sbjct: 100 -ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 158
Query: 322 QSVECMEMLLRK-GSQVNASDCDNRTPL-HASLSKNILSVHPL-EILLKWGANVNARDIF 378
VE +++LL + G+ VNA D R L HA LS + V + +LL GA+VN R
Sbjct: 159 GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER 218
Query: 379 GYSPIHIA 386
G +P+ +A
Sbjct: 219 GKTPLILA 226
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Query: 265 SGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSV 324
G A+V+ + +E T LH A + + + +LL + A+ R P LAA SV
Sbjct: 26 EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSV 85
Query: 325 ECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNAR 375
+ +++ L KG+ VN D T + V L+ L K GANVN R
Sbjct: 86 KLLKLFLSKGADVNECDFYGFTAFMEAAVYG--KVKALKFLYKRGANVNLR 134
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 92/188 (48%), Gaps = 15/188 (7%)
Query: 212 TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVD 271
T +H+AV + D V+LLL +P + G +P +AA G + LK L G ADV+
Sbjct: 61 TPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKG-ADVN 119
Query: 272 IKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHL----------AAKC 321
+ TA AA G V+ L+ L + AN N R ++ L AA+
Sbjct: 120 -ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 178
Query: 322 QSVECMEMLLRK-GSQVNASDCDNRTPL-HASLSKNILSVHPL-EILLKWGANVNARDIF 378
VE +++LL + G+ VNA D R L HA LS + V + +LL GA+VN R
Sbjct: 179 GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER 238
Query: 379 GYSPIHIA 386
G +P+ +A
Sbjct: 239 GKTPLILA 246
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Query: 265 SGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSV 324
G A+V+ + +E T LH A + + + +LL + A+ R P LAA SV
Sbjct: 46 EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSV 105
Query: 325 ECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNAR 375
+ +++ L KG+ VN D T + V L+ L K GANVN R
Sbjct: 106 KLLKLFLSKGADVNECDFYGFTAFMEAAVYG--KVKALKFLYKRGANVNLR 154
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 60.1 bits (144), Expect = 5e-09, Method: Composition-based stats.
Identities = 59/188 (31%), Positives = 92/188 (48%), Gaps = 13/188 (6%)
Query: 170 LMLHGHDINFTKDSY--TPLHFAVLGNYVDCAKFLIKNKAHIH------ETIVHSAVSTN 221
L+ G ++N T D T LH A D AK L+ A + T +H+AV+ +
Sbjct: 36 LLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAAD 95
Query: 222 AVDCVQLLL-SLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERR-V 279
A+ Q+LL + N N + G +PL +AA + ++ ++ AD DI +
Sbjct: 96 AMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLI---TADADINAADNSGK 152
Query: 280 TALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNA 339
TALH AA E + ILL +HAN + ++ K++ PL LAA+ S E + LL +
Sbjct: 153 TALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREI 212
Query: 340 SDCDNRTP 347
+D +R P
Sbjct: 213 TDHMDRLP 220
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 58/176 (32%), Positives = 87/176 (49%), Gaps = 24/176 (13%)
Query: 243 GVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHA 302
G++PL IAA RG LD+G DI+ E + + + LL A
Sbjct: 2 GLTPLMIAAVRG------GGLDTGE---DIENNE-----------DSTAQVISDLLAQGA 41
Query: 303 NCNERNHKE-QIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHP 361
N K + LHLAA+ + + LL G+ N+ D RTPLHA+++ + + V
Sbjct: 42 ELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGV-- 99
Query: 362 LEILLKWGA-NVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSAL 416
+ILL+ A N+NAR G +P+ +AA + V+ LI ADI++ SG +AL
Sbjct: 100 FQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTAL 155
Score = 56.2 bits (134), Expect = 8e-08, Method: Composition-based stats.
Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 5/150 (3%)
Query: 239 LNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILL 298
++ G + LH+AA K +LD+G AD + + R T LH A + +ILL
Sbjct: 47 MDKTGETSLHLAARFARADAAKRLLDAG-ADANSQDNTGR-TPLHAAVAADAMGVFQILL 104
Query: 299 ENHA-NCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNIL 357
N A N N R H PL LAA+ +E L+ + +NA+D +T LH + + N
Sbjct: 105 RNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVN-- 162
Query: 358 SVHPLEILLKWGANVNARDIFGYSPIHIAA 387
+ + ILL AN +A+D +P+ +AA
Sbjct: 163 NTEAVNILLMHHANRDAQDDKDETPLFLAA 192
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 54/194 (27%), Positives = 87/194 (44%), Gaps = 10/194 (5%)
Query: 135 DLLDALHQLGADLSNDKYGALHLAAFNGSIKGCSWLMLHGHDINFTKDS-YTPLHFAVLG 193
DLL +L A + +LHLAA L+ G D N ++ TPLH AV
Sbjct: 35 DLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAA 94
Query: 194 NYVDCAKFLIKNKA-------HIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSP 246
+ + + L++N+A H T + A V+ L++ + N +N G +
Sbjct: 95 DAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTA 154
Query: 247 LHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNE 306
LH AA + IL A+ D + ++ T L LAA G E + LL+N AN
Sbjct: 155 LHWAAAVNNTEAVN-ILLMHHANRDAQ-DDKDETPLFLAAREGSYEASKALLDNFANREI 212
Query: 307 RNHKEQIPLHLAAK 320
+H +++P +A++
Sbjct: 213 TDHMDRLPRDVASE 226
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 60.1 bits (144), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 69/137 (50%), Gaps = 4/137 (2%)
Query: 280 TALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNA 339
T L +A G + L+EN +++ + L A K + E LL KGS VN
Sbjct: 37 TPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT 96
Query: 340 SDCDNRTPLHASLSKNILSVHPLE-ILLKWGANVNARDIFGYSPIHIAALSELSQCVDCL 398
D +TPL S+ I + LL+ GANVN R++ G +P+ +A+ S+ V L
Sbjct: 97 KDFSGKTPLMWSI---IFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153
Query: 399 IMHGADISSKTPSGSSA 415
+ GADIS++ +G +A
Sbjct: 154 LELGADISARDLTGLTA 170
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 2/138 (1%)
Query: 305 NERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEI 364
N R+ + PL +A ++ L+ ++ D + T L ++ N L + E
Sbjct: 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIA--EK 86
Query: 365 LLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTP 424
LL G+NVN +D G +P+ + + S+ L+ HGA+++ + G + L + +
Sbjct: 87 LLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGR 146
Query: 425 SSISSVRKKLDSSISLQD 442
S I +L + IS +D
Sbjct: 147 SEIVKKLLELGADISARD 164
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 59.3 bits (142), Expect = 8e-09, Method: Composition-based stats.
Identities = 52/179 (29%), Positives = 86/179 (48%), Gaps = 32/179 (17%)
Query: 208 HIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGM 267
++ +T +H AV TN + + LL +P + + +G +PLH+A ++G CL
Sbjct: 40 NLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQG---CL-------- 88
Query: 268 ADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECM 327
A V + T+ T HL H+ N+ LHLA+ + +
Sbjct: 89 ASVGVLTQS--CTTPHL----------------HSILKATNYNGHTCLHLASIHGYLGIV 130
Query: 328 EMLLRKGSQVNASD-CDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHI 385
E+L+ G+ VNA + C+ RT LH L+ ++ + + +LLK GA+VN GYSP +
Sbjct: 131 ELLVSLGADVNAQEPCNGRTALH--LAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 187
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 19/140 (13%)
Query: 291 VECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHA 350
+E +R + + A N +N+ +Q PLHLA E E LL G D TPLH
Sbjct: 22 MEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHL 81
Query: 351 S-----------LSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLI 399
+ L+++ + H IL A + G++ +H+A++ V+ L+
Sbjct: 82 ACEQGCLASVGVLTQSCTTPHLHSIL-------KATNYNGHTCLHLASIHGYLGIVELLV 134
Query: 400 MHGADISSKTP-SGSSALSI 418
GAD++++ P +G +AL +
Sbjct: 135 SLGADVNAQEPCNGRTALHL 154
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/156 (31%), Positives = 80/156 (51%), Gaps = 11/156 (7%)
Query: 237 NVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRI 296
N NN +PLH+A +A+L +G D +++ R T LHLA E G + + +
Sbjct: 39 NFQNNLQQTPLHLAVITNQPEIAEALLGAG-CDPELRDF-RGNTPLHLACEQGCLASVGV 96
Query: 297 LLEN------HANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASD-CDNRTPLH 349
L ++ H+ N+ LHLA+ + +E+L+ G+ VNA + C+ RT LH
Sbjct: 97 LTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALH 156
Query: 350 ASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHI 385
L+ ++ + + +LLK GA+VN GYSP +
Sbjct: 157 --LAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQL 190
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 9/135 (6%)
Query: 291 VECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHA 350
+E +R + + A N +N+ +Q PLHLA E E LL G D TPLH
Sbjct: 25 MEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHL 84
Query: 351 SLSKNILSVHPLEILLKWGANVNARDIF------GYSPIHIAALSELSQCVDCLIMHGAD 404
+ + L+ + +L + + I G++ +H+A++ V+ L+ GAD
Sbjct: 85 ACEQGCLA--SVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD 142
Query: 405 ISSKTP-SGSSALSI 418
++++ P +G +AL +
Sbjct: 143 VNAQEPCNGRTALHL 157
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 57.0 bits (136), Expect = 5e-08, Method: Composition-based stats.
Identities = 55/170 (32%), Positives = 91/170 (53%), Gaps = 9/170 (5%)
Query: 185 TPLHFAVLGNYVDCAKFLIKNKA------HIHETIVHSAVSTNAVDCVQLLL-SLQINPN 237
T LH A + D AK L++ A ++ T +H+AVS +A Q+LL + + +
Sbjct: 24 TALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLD 83
Query: 238 VLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRIL 297
+ G +PL +AA L L+ +++S ADV+ + +ALH AA V+ +L
Sbjct: 84 ARMHDGTTPLILAARLALEGMLEDLINS-HADVN-AVDDLGKSALHWAAAVNNVDAAVVL 141
Query: 298 LENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTP 347
L+N AN + +N+KE+ PL LAA+ S E ++LL + + +D +R P
Sbjct: 142 LKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLP 191
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 36/113 (31%), Positives = 59/113 (52%), Gaps = 3/113 (2%)
Query: 305 NERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEI 364
N+ + + LHLAA+ + + LL + D RTPLHA++S + V +I
Sbjct: 16 NQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGV--FQI 73
Query: 365 LLKWGA-NVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSAL 416
LL+ A +++AR G +P+ +AA L ++ LI AD+++ G SAL
Sbjct: 74 LLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSAL 126
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 280 TALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLR-KGSQVN 338
TALHLAA + + LLE A+ +++ + PLH A + ++LLR + + ++
Sbjct: 24 TALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLD 83
Query: 339 ASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCL 398
A D TPL L+ + LE L+ A+VNA D G S +H AA L
Sbjct: 84 ARMHDGTTPL--ILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 141
Query: 399 IMHGAD 404
+ +GA+
Sbjct: 142 LKNGAN 147
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 54/194 (27%), Positives = 92/194 (47%), Gaps = 17/194 (8%)
Query: 138 DALHQLGADLSN--DKYG--ALHLAAFNGSIKGCSWLMLHGHDINFTKD-SYTPLHFAVL 192
D ++Q GA L N D+ G ALHLAA L+ D + TPLH AV
Sbjct: 6 DFIYQ-GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVS 64
Query: 193 GNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQL--------LLSLQINPNVLNNKGV 244
+ + L++N+A + +H +T + +L L++ + N +++ G
Sbjct: 65 ADAQGVFQILLRNRATDLDARMHDG-TTPLILAARLALEGMLEDLINSHADVNAVDDLGK 123
Query: 245 SPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANC 304
S LH AA + +L +G A+ D++ + T L LAA G E ++LL++ AN
Sbjct: 124 SALHWAAAVNNVDAAVVLLKNG-ANKDMQNNKEE-TPLFLAAREGSYETAKVLLDHFANR 181
Query: 305 NERNHKEQIPLHLA 318
+ +H +++P +A
Sbjct: 182 DITDHMDRLPRDIA 195
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 5/169 (2%)
Query: 237 NVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRI 296
N + G + LH+AA K +L++ AD I+ R T LH A +I
Sbjct: 16 NQTDRTGETALHLAARYSRSDAAKRLLEAS-ADAXIQDNMGR-TPLHAAVSADAQGVFQI 73
Query: 297 LLENHA-NCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKN 355
LL N A + + R H PL LAA+ +E L+ + VNA D ++ LH + + N
Sbjct: 74 LLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVN 133
Query: 356 ILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGAD 404
+ +LLK GAN + ++ +P+ +AA + L+ H A+
Sbjct: 134 NVDAA--VVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFAN 180
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 3/176 (1%)
Query: 211 ETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADV 270
ET +H A + D + LL + + +N G +PLH A + +L + D+
Sbjct: 23 ETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDL 82
Query: 271 DIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEML 330
D + + T L LAA L L+ +HA+ N + + LH AA +V+ +L
Sbjct: 83 DARMHDG-TTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 141
Query: 331 LRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIA 386
L+ G+ + + TPL + + S ++LL AN + D P IA
Sbjct: 142 LKNGANKDMQNNKEETPLFLAAREG--SYETAKVLLDHFANRDITDHMDRLPRDIA 195
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 55.8 bits (133), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 7/138 (5%)
Query: 214 VHSAVSTNAVDCVQLLLSLQINPNVLNN---KGVSPLHIAADRGLISCLKAILDSGMADV 270
+H + +D QL L+ N++N +G +PL A+ G I ++ +L+ G AD
Sbjct: 6 IHQLAAQGELD--QLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG-ADP 62
Query: 271 DIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEML 330
I KER +AL LA+ GY + + +LLE + N + PL A + V+C+E L
Sbjct: 63 HILAKERE-SALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121
Query: 331 LRKGSQVNASDCDNRTPL 348
L +G+ + TP+
Sbjct: 122 LARGADLTTEADSGYTPM 139
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 11/126 (8%)
Query: 183 SYTPLHFAVLGNYVDCAKFLIKNKAHIH------ETIVHSAVSTNAVDCVQLLLSLQINP 236
+TPL +A ++ +FL++ A H E+ + A + D V LLL ++
Sbjct: 36 GFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDI 95
Query: 237 NVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTK-ERRVTALHLAAENGYVECLR 295
N+ + G +PL A + C++A+L G D+ T+ + T + LA GY + +
Sbjct: 96 NIYDWNGGTPLLYAVRGNHVKCVEALLARG---ADLTTEADSGYTPMDLAVALGYRKVQQ 152
Query: 296 ILLENH 301
+ +ENH
Sbjct: 153 V-IENH 157
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 85/203 (41%), Gaps = 41/203 (20%)
Query: 247 LHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNE 306
+H A +G + LK L G V+ K ER T L A+ G +E +R LLE A+ +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVN-KPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 307 RNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILL 366
+ + L LA+ + + +LL + +N D + TPL ++ N
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGN----------- 113
Query: 367 KWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSS----ALSIIMRN 422
H+ +CV+ L+ GAD++++ SG + A+++ R
Sbjct: 114 -----------------HV-------KCVEALLARGADLTTEADSGYTPMDLAVALGYRK 149
Query: 423 TPSSISS-VRKKLDSSISLQDPE 444
I + + K S++ DPE
Sbjct: 150 VQQVIENHILKLFQSNLVPADPE 172
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 7/138 (5%)
Query: 214 VHSAVSTNAVDCVQLLLSLQINPNVLNN---KGVSPLHIAADRGLISCLKAILDSGMADV 270
+H + +D QL L+ N++N +G +PL A+ G I ++ +L+ G AD
Sbjct: 6 IHQLAAQGELD--QLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG-ADP 62
Query: 271 DIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEML 330
I KER +AL LA+ GY + + +LLE + N + PL A V+C+E L
Sbjct: 63 HILAKERE-SALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKCVEAL 121
Query: 331 LRKGSQVNASDCDNRTPL 348
L +G+ + TP+
Sbjct: 122 LARGADLTTEADSGYTPM 139
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 11/126 (8%)
Query: 183 SYTPLHFAVLGNYVDCAKFLIKNKAHIH------ETIVHSAVSTNAVDCVQLLLSLQINP 236
+TPL +A ++ +FL++ A H E+ + A + D V LLL ++
Sbjct: 36 GFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDI 95
Query: 237 NVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTK-ERRVTALHLAAENGYVECLR 295
N+ + G +PL A + C++A+L G D+ T+ + T + LA GY + +
Sbjct: 96 NIYDWNGGTPLLYAVHGNHVKCVEALLARG---ADLTTEADSGYTPMDLAVALGYRKVQQ 152
Query: 296 ILLENH 301
+ +ENH
Sbjct: 153 V-IENH 157
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 87/203 (42%), Gaps = 41/203 (20%)
Query: 247 LHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNE 306
+H A +G + LK L G V+ K ER T L A+ G +E +R LLE A+ +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVN-KPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 307 RNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILL 366
+ + L LA+ + + +LL + +N D + TPL + +VH
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPL-------LYAVH------ 111
Query: 367 KWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSS----ALSIIMRN 422
G +V +CV+ L+ GAD++++ SG + A+++ R
Sbjct: 112 --GNHV--------------------KCVEALLARGADLTTEADSGYTPMDLAVALGYRK 149
Query: 423 TPSSISS-VRKKLDSSISLQDPE 444
I + + K S++ DPE
Sbjct: 150 VQQVIENHILKLFQSNLVPADPE 172
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 52/170 (30%), Positives = 91/170 (53%), Gaps = 9/170 (5%)
Query: 185 TPLHFAVLGNYVDCAKFLIKNKA------HIHETIVHSAVSTNAVDCVQLLL-SLQINPN 237
T LH A + D AK L++ A ++ T +H+AVS +A Q+L+ + + +
Sbjct: 59 TALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 118
Query: 238 VLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRIL 297
+ G +PL +AA + L+ +++S ADV+ + +ALH AA V+ +L
Sbjct: 119 ARMHDGTTPLILAARLAVEGMLEDLINS-HADVN-AVDDLGKSALHWAAAVNNVDAAVVL 176
Query: 298 LENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTP 347
L+N AN + +N++E+ PL LAA+ S E ++LL + + +D +R P
Sbjct: 177 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLP 226
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 59/193 (30%), Positives = 92/193 (47%), Gaps = 15/193 (7%)
Query: 138 DALHQLGADLSN--DKYGA--LHLAAFNGSIKGCSWLMLHGHDINFTKD-SYTPLHFAVL 192
D ++Q GA L N D+ GA LHLAA L+ D N + TPLH AV
Sbjct: 41 DFIYQ-GASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS 99
Query: 193 GNYVDCAKFLIKNKAHIHETIVHSAVST---NAVDCVQLLLSLQINP----NVLNNKGVS 245
+ + LI+N+A + +H + A V+ +L IN N +++ G S
Sbjct: 100 ADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKS 159
Query: 246 PLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCN 305
LH AA + +L +G A+ D++ R T L LAA G E ++LL++ AN +
Sbjct: 160 ALHWAAAVNNVDAAVVLLKNG-ANKDMQNN-REETPLFLAAREGSYETAKVLLDHFANRD 217
Query: 306 ERNHKEQIPLHLA 318
+H +++P +A
Sbjct: 218 ITDHMDRLPRDIA 230
Score = 49.7 bits (117), Expect = 7e-06, Method: Composition-based stats.
Identities = 53/190 (27%), Positives = 83/190 (43%), Gaps = 27/190 (14%)
Query: 234 INPNVLNNKGVSPLHIAADRGLISCLKAILDSGM------------------ADVDIKTK 275
++ NV G +PL IA SC L++G A + +T
Sbjct: 1 MDVNVRGPDGFTPLMIA------SCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTD 54
Query: 276 ERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLR-KG 334
TALHLAA + + LLE A+ N +++ + PLH A + ++L+R +
Sbjct: 55 RTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 114
Query: 335 SQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQC 394
+ ++A D TPL L+ + LE L+ A+VNA D G S +H AA
Sbjct: 115 TDLDARMHDGTTPL--ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDA 172
Query: 395 VDCLIMHGAD 404
L+ +GA+
Sbjct: 173 AVVLLKNGAN 182
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 5/169 (2%)
Query: 237 NVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRI 296
N + G + LH+AA K +L++ AD +I+ R T LH A +I
Sbjct: 51 NQTDRTGATALHLAAAYSRSDAAKRLLEAS-ADANIQDNMGR-TPLHAAVSADAQGVFQI 108
Query: 297 LLENHA-NCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKN 355
L+ N A + + R H PL LAA+ +E L+ + VNA D ++ LH + + N
Sbjct: 109 LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN 168
Query: 356 ILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGAD 404
+ +LLK GAN + ++ +P+ +AA + L+ H A+
Sbjct: 169 NVDAA--VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 215
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 3/113 (2%)
Query: 305 NERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEI 364
N+ + LHLAA + + LL + N D RTPLHA++S + V +I
Sbjct: 51 NQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGV--FQI 108
Query: 365 LLKWGA-NVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSAL 416
L++ A +++AR G +P+ +AA + ++ LI AD+++ G SAL
Sbjct: 109 LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 161
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 3/197 (1%)
Query: 190 AVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHI 249
AV+ +++ L T +H A + + D + LL + N+ +N G +PLH
Sbjct: 37 AVISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHA 96
Query: 250 AADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNH 309
A + ++ + D+D + + T L LAA L L+ +HA+ N +
Sbjct: 97 AVSADAQGVFQILIRNRATDLDARMHDG-TTPLILAARLAVEGMLEDLINSHADVNAVDD 155
Query: 310 KEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWG 369
+ LH AA +V+ +LL+ G+ + + TPL + + S ++LL
Sbjct: 156 LGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG--SYETAKVLLDHF 213
Query: 370 ANVNARDIFGYSPIHIA 386
AN + D P IA
Sbjct: 214 ANRDITDHMDRLPRDIA 230
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 52/170 (30%), Positives = 91/170 (53%), Gaps = 9/170 (5%)
Query: 185 TPLHFAVLGNYVDCAKFLIKNKA------HIHETIVHSAVSTNAVDCVQLLL-SLQINPN 237
T LH A + D AK L++ A ++ T +H+AVS +A Q+L+ + + +
Sbjct: 60 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 119
Query: 238 VLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRIL 297
+ G +PL +AA + L+ +++S ADV+ + +ALH AA V+ +L
Sbjct: 120 ARMHDGTTPLILAARLAVEGMLEDLINS-HADVN-AVDDLGKSALHWAAAVNNVDAAVVL 177
Query: 298 LENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTP 347
L+N AN + +N++E+ PL LAA+ S E ++LL + + +D +R P
Sbjct: 178 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLP 227
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 59/193 (30%), Positives = 92/193 (47%), Gaps = 15/193 (7%)
Query: 138 DALHQLGADLSN--DKYG--ALHLAAFNGSIKGCSWLMLHGHDINFTKD-SYTPLHFAVL 192
D ++Q GA L N D+ G ALHLAA L+ D N + TPLH AV
Sbjct: 42 DFIYQ-GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS 100
Query: 193 GNYVDCAKFLIKNKAHIHETIVHSAVST---NAVDCVQLLLSLQINP----NVLNNKGVS 245
+ + LI+N+A + +H + A V+ +L IN N +++ G S
Sbjct: 101 ADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKS 160
Query: 246 PLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCN 305
LH AA + +L +G A+ D++ R T L LAA G E ++LL++ AN +
Sbjct: 161 ALHWAAAVNNVDAAVVLLKNG-ANKDMQNN-REETPLFLAAREGSYETAKVLLDHFANRD 218
Query: 306 ERNHKEQIPLHLA 318
+H +++P +A
Sbjct: 219 ITDHMDRLPRDIA 231
Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 3/126 (2%)
Query: 280 TALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLR-KGSQVN 338
TALHLAA + + LLE A+ N +++ + PLH A + ++L+R + + ++
Sbjct: 60 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 119
Query: 339 ASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCL 398
A D TPL L+ + LE L+ A+VNA D G S +H AA L
Sbjct: 120 ARMHDGTTPL--ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 177
Query: 399 IMHGAD 404
+ +GA+
Sbjct: 178 LKNGAN 183
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 305 NERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEI 364
N+ + + LHLAA+ + + LL + N D RTPLHA++S + V +I
Sbjct: 52 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGV--FQI 109
Query: 365 LLKWGA-NVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSAL 416
L++ A +++AR G +P+ +AA + ++ LI AD+++ G SAL
Sbjct: 110 LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 162
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 3/197 (1%)
Query: 190 AVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHI 249
AV+ +++ L ET +H A + D + LL + N+ +N G +PLH
Sbjct: 38 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHA 97
Query: 250 AADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNH 309
A + ++ + D+D + + T L LAA L L+ +HA+ N +
Sbjct: 98 AVSADAQGVFQILIRNRATDLDARMHD-GTTPLILAARLAVEGMLEDLINSHADVNAVDD 156
Query: 310 KEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWG 369
+ LH AA +V+ +LL+ G+ + + TPL + + S ++LL
Sbjct: 157 LGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG--SYETAKVLLDHF 214
Query: 370 ANVNARDIFGYSPIHIA 386
AN + D P IA
Sbjct: 215 ANRDITDHMDRLPRDIA 231
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 5/169 (2%)
Query: 237 NVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRI 296
N + G + LH+AA K +L++ AD +I+ R T LH A +I
Sbjct: 52 NQTDRTGETALHLAARYSRSDAAKRLLEAS-ADANIQDNMGR-TPLHAAVSADAQGVFQI 109
Query: 297 LLENHA-NCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKN 355
L+ N A + + R H PL LAA+ +E L+ + VNA D ++ LH + + N
Sbjct: 110 LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN 169
Query: 356 ILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGAD 404
+ +LLK GAN + ++ +P+ +AA + L+ H A+
Sbjct: 170 NVDAA--VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 216
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 52/170 (30%), Positives = 91/170 (53%), Gaps = 9/170 (5%)
Query: 185 TPLHFAVLGNYVDCAKFLIKNKA------HIHETIVHSAVSTNAVDCVQLLL-SLQINPN 237
T LH A + D AK L++ A ++ T +H+AVS +A Q+L+ + + +
Sbjct: 59 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 118
Query: 238 VLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRIL 297
+ G +PL +AA + L+ +++S ADV+ + +ALH AA V+ +L
Sbjct: 119 ARMHDGTTPLILAARLAVEGMLEDLINS-HADVN-AVDDLGKSALHWAAAVNNVDAAVVL 176
Query: 298 LENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTP 347
L+N AN + +N++E+ PL LAA+ S E ++LL + + +D +R P
Sbjct: 177 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLP 226
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 59/193 (30%), Positives = 92/193 (47%), Gaps = 15/193 (7%)
Query: 138 DALHQLGADLSN--DKYG--ALHLAAFNGSIKGCSWLMLHGHDINFTKD-SYTPLHFAVL 192
D ++Q GA L N D+ G ALHLAA L+ D N + TPLH AV
Sbjct: 41 DFIYQ-GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS 99
Query: 193 GNYVDCAKFLIKNKAHIHETIVHSAVST---NAVDCVQLLLSLQINP----NVLNNKGVS 245
+ + LI+N+A + +H + A V+ +L IN N +++ G S
Sbjct: 100 ADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKS 159
Query: 246 PLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCN 305
LH AA + +L +G A+ D++ R T L LAA G E ++LL++ AN +
Sbjct: 160 ALHWAAAVNNVDAAVVLLKNG-ANKDMQNN-REETPLFLAAREGSYETAKVLLDHFANRD 217
Query: 306 ERNHKEQIPLHLA 318
+H +++P +A
Sbjct: 218 ITDHMDRLPRDIA 230
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 3/126 (2%)
Query: 280 TALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLR-KGSQVN 338
TALHLAA + + LLE A+ N +++ + PLH A + ++L+R + + ++
Sbjct: 59 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 118
Query: 339 ASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCL 398
A D TPL L+ + LE L+ A+VNA D G S +H AA L
Sbjct: 119 ARMHDGTTPL--ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 176
Query: 399 IMHGAD 404
+ +GA+
Sbjct: 177 LKNGAN 182
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 305 NERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEI 364
N+ + + LHLAA+ + + LL + N D RTPLHA++S + V +I
Sbjct: 51 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGV--FQI 108
Query: 365 LLKWGA-NVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSAL 416
L++ A +++AR G +P+ +AA + ++ LI AD+++ G SAL
Sbjct: 109 LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 161
Score = 47.0 bits (110), Expect = 5e-05, Method: Composition-based stats.
Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 3/197 (1%)
Query: 190 AVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHI 249
AV+ +++ L ET +H A + D + LL + N+ +N G +PLH
Sbjct: 37 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHA 96
Query: 250 AADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNH 309
A + ++ + D+D + + T L LAA L L+ +HA+ N +
Sbjct: 97 AVSADAQGVFQILIRNRATDLDARMHD-GTTPLILAARLAVEGMLEDLINSHADVNAVDD 155
Query: 310 KEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWG 369
+ LH AA +V+ +LL+ G+ + + TPL + + S ++LL
Sbjct: 156 LGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG--SYETAKVLLDHF 213
Query: 370 ANVNARDIFGYSPIHIA 386
AN + D P IA
Sbjct: 214 ANRDITDHMDRLPRDIA 230
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 5/169 (2%)
Query: 237 NVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRI 296
N + G + LH+AA K +L++ AD +I+ R T LH A +I
Sbjct: 51 NQTDRTGETALHLAARYSRSDAAKRLLEAS-ADANIQDNMGR-TPLHAAVSADAQGVFQI 108
Query: 297 LLENHA-NCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKN 355
L+ N A + + R H PL LAA+ +E L+ + VNA D ++ LH + + N
Sbjct: 109 LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN 168
Query: 356 ILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGAD 404
+ +LLK GAN + ++ +P+ +AA + L+ H A+
Sbjct: 169 NVDAA--VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 215
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 52/170 (30%), Positives = 91/170 (53%), Gaps = 9/170 (5%)
Query: 185 TPLHFAVLGNYVDCAKFLIKNKA------HIHETIVHSAVSTNAVDCVQLLL-SLQINPN 237
T LH A + D AK L++ A ++ T +H+AVS +A Q+L+ + + +
Sbjct: 27 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 86
Query: 238 VLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRIL 297
+ G +PL +AA + L+ +++S ADV+ + +ALH AA V+ +L
Sbjct: 87 ARMHDGTTPLILAARLAVEGMLEDLINS-HADVN-AVDDLGKSALHWAAAVNNVDAAVVL 144
Query: 298 LENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTP 347
L+N AN + +N++E+ PL LAA+ S E ++LL + + +D +R P
Sbjct: 145 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLP 194
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 59/193 (30%), Positives = 92/193 (47%), Gaps = 15/193 (7%)
Query: 138 DALHQLGADLSN--DKYG--ALHLAAFNGSIKGCSWLMLHGHDINFTKD-SYTPLHFAVL 192
D ++Q GA L N D+ G ALHLAA L+ D N + TPLH AV
Sbjct: 9 DFIYQ-GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVS 67
Query: 193 GNYVDCAKFLIKNKAHIHETIVHSAVST---NAVDCVQLLLSLQINP----NVLNNKGVS 245
+ + LI+N+A + +H + A V+ +L IN N +++ G S
Sbjct: 68 ADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKS 127
Query: 246 PLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCN 305
LH AA + +L +G A+ D++ R T L LAA G E ++LL++ AN +
Sbjct: 128 ALHWAAAVNNVDAAVVLLKNG-ANKDMQNN-REETPLFLAAREGSYETAKVLLDHFANRD 185
Query: 306 ERNHKEQIPLHLA 318
+H +++P +A
Sbjct: 186 ITDHMDRLPRDIA 198
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 3/126 (2%)
Query: 280 TALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLR-KGSQVN 338
TALHLAA + + LLE A+ N +++ + PLH A + ++L+R + + ++
Sbjct: 27 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 86
Query: 339 ASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCL 398
A D TPL L+ + LE L+ A+VNA D G S +H AA L
Sbjct: 87 ARMHDGTTPL--ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 144
Query: 399 IMHGAD 404
+ +GA+
Sbjct: 145 LKNGAN 150
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 60/113 (53%), Gaps = 3/113 (2%)
Query: 305 NERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEI 364
N+ + + LHLAA+ + + LL + N D RTPLHA++S + V +I
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGV--FQI 76
Query: 365 LLKWGA-NVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSAL 416
L++ A +++AR G +P+ +AA + ++ LI AD+++ G SAL
Sbjct: 77 LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSAL 129
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 49/197 (24%), Positives = 84/197 (42%), Gaps = 3/197 (1%)
Query: 190 AVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHI 249
AV+ +++ L ET +H A + D + LL + N+ +N G +PLH
Sbjct: 5 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHA 64
Query: 250 AADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNH 309
A + ++ + D+D + + T L LAA L L+ +HA+ N +
Sbjct: 65 AVSADAQGVFQILIRNRATDLDARMHD-GTTPLILAARLAVEGMLEDLINSHADVNAVDD 123
Query: 310 KEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWG 369
+ LH AA +V+ +LL+ G+ + + TPL + + S ++LL
Sbjct: 124 LGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG--SYETAKVLLDHF 181
Query: 370 ANVNARDIFGYSPIHIA 386
AN + D P IA
Sbjct: 182 ANRDITDHMDRLPRDIA 198
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 5/169 (2%)
Query: 237 NVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRI 296
N + G + LH+AA K +L++ AD +I+ R T LH A +I
Sbjct: 19 NQTDRTGETALHLAARYSRSDAAKRLLEAS-ADANIQDNMGR-TPLHAAVSADAQGVFQI 76
Query: 297 LLENHA-NCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKN 355
L+ N A + + R H PL LAA+ +E L+ + VNA D ++ LH + + N
Sbjct: 77 LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN 136
Query: 356 ILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGAD 404
+ +LLK GAN + ++ +P+ +AA + L+ H A+
Sbjct: 137 NVDAA--VVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN 183
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 86/180 (47%), Gaps = 3/180 (1%)
Query: 240 NNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLE 299
+ + V+ LH AA I +K + G A VD + T LH A G++ + L++
Sbjct: 39 DKENVTLLHWAAINNRIDLVKYYISKG-AIVDQLGGDLNSTPLHWATRQGHLSMVVQLMK 97
Query: 300 NHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSV 359
A+ + + + +HLAA+ + L+ KG V+ D + TPL + + SV
Sbjct: 98 YGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRT-HSV 156
Query: 360 HPLEILLKWGANVNARDIF-GYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSI 418
P +LL + +VN D + + +H A L+ + + L+ GA++ ++ G SAL +
Sbjct: 157 DPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDL 216
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 87/204 (42%), Gaps = 41/204 (20%)
Query: 162 GSIKGCSWLMLHGHDINF-TKDSYTPLHFAVLGNYVDCAKFLIKNKA-------HIHETI 213
G + C L+ G+D+ K++ T LH+A + N +D K+ I A ++ T
Sbjct: 20 GIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTP 79
Query: 214 VHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSG----MAD 269
+H A + V L+ +P++++ +G S +H+AA G S + ++ G M D
Sbjct: 80 LHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMD 139
Query: 270 -----------------------------VDIKTKERRVTALHLAAENGYVECLRILLEN 300
V++ K + TALH A G + +LLE
Sbjct: 140 QNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA 199
Query: 301 HANCNERNHKEQIPLHLAAKCQSV 324
AN + +N K + L LA + ++V
Sbjct: 200 GANVDAQNIKGESALDLAKQRKNV 223
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCD- 343
A + G E R L+E + + + + LH AA ++ ++ + KG+ V+ D
Sbjct: 16 ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL 75
Query: 344 NRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGA 403
N TPLH + + LS+ + L+K+GA+ + D G S IH+AA + V LI G
Sbjct: 76 NSTPLHWATRQGHLSM--VVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQ 133
Query: 404 DISSKTPSGSSAL 416
D+ +G + L
Sbjct: 134 DVDMMDQNGMTPL 146
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
Query: 237 NVLNN---KGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVEC 293
NV+N+ +G +PL AA G I+ ++ +L +G AD + K R +AL LA GY +
Sbjct: 43 NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG-ADPQLLGKGRE-SALSLACSKGYTDI 100
Query: 294 LRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGS 335
+++LL+ + NE + PL A V+C++MLL G+
Sbjct: 101 VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 142
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 10/132 (7%)
Query: 177 INFT-KDSYTPLHFAVLGNYVDCAKFLIKNKAHIH------ETIVHSAVSTNAVDCVQLL 229
IN T ++ +TPL +A + +FL++N A E+ + A S D V++L
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 104
Query: 230 LSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENG 289
L ++ N + G +PL A + C+K +L+SG AD I+T + ++ LA G
Sbjct: 105 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG-ADPTIET-DSGYNSMDLAVALG 162
Query: 290 YVECLRILLENH 301
Y ++ ++E+H
Sbjct: 163 Y-RSVQQVIESH 173
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 2/150 (1%)
Query: 281 ALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNAS 340
++H A G + L +E N + + PL AA + +E LL+ G+
Sbjct: 22 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 81
Query: 341 DCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIM 400
+ L + SK + +++LL G +VN D G +P+ A +CV L+
Sbjct: 82 GKGRESALSLACSKGYTDI--VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 139
Query: 401 HGADISSKTPSGSSALSIIMRNTPSSISSV 430
GAD + +T SG +++ + + S+ V
Sbjct: 140 SGADPTIETDSGYNSMDLAVALGYRSVQQV 169
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 274 TKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRK 333
T E T L AA +G + + LL+N A+ + L LA + ++MLL
Sbjct: 48 TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDC 107
Query: 334 GSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIA 386
G VN D + TPL ++ N V +++LL+ GA+ GY+ + +A
Sbjct: 108 GVDVNEYDWNGGTPLLYAVHGN--HVKCVKMLLESGADPTIETDSGYNSMDLA 158
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
Query: 237 NVLNN---KGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVEC 293
NV+N+ +G +PL AA G I+ ++ +L +G AD + K R +AL LA GY +
Sbjct: 25 NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG-ADPQLLGKGRE-SALSLACSKGYTDI 82
Query: 294 LRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGS 335
+++LL+ + NE + PL A V+C++MLL G+
Sbjct: 83 VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 124
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 10/132 (7%)
Query: 177 INFT-KDSYTPLHFAVLGNYVDCAKFLIKNKAHIH------ETIVHSAVSTNAVDCVQLL 229
IN T ++ +TPL +A + +FL++N A E+ + A S D V++L
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 86
Query: 230 LSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENG 289
L ++ N + G +PL A + C+K +L+SG AD I+T + ++ LA G
Sbjct: 87 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG-ADPTIET-DSGYNSMDLAVALG 144
Query: 290 YVECLRILLENH 301
Y ++ ++E+H
Sbjct: 145 Y-RSVQQVIESH 155
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 2/150 (1%)
Query: 281 ALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNAS 340
++H A G + L +E N + + PL AA + +E LL+ G+
Sbjct: 4 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 63
Query: 341 DCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIM 400
+ L + SK + +++LL G +VN D G +P+ A +CV L+
Sbjct: 64 GKGRESALSLACSKGYTDI--VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 121
Query: 401 HGADISSKTPSGSSALSIIMRNTPSSISSV 430
GAD + +T SG +++ + + S+ V
Sbjct: 122 SGADPTIETDSGYNSMDLAVALGYRSVQQV 151
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 274 TKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRK 333
T E T L AA +G + + LL+N A+ + L LA + ++MLL
Sbjct: 30 TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDC 89
Query: 334 GSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIA 386
G VN D + TPL ++ N V +++LL+ GA+ GY+ + +A
Sbjct: 90 GVDVNEYDWNGGTPLLYAVHGN--HVKCVKMLLESGADPTIETDSGYNSMDLA 140
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 5/102 (4%)
Query: 237 NVLNN---KGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVEC 293
NV+N+ +G +PL AA G I+ ++ +L +G AD + K R +AL LA GY +
Sbjct: 27 NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG-ADPQLLGKGRE-SALSLACSKGYTDI 84
Query: 294 LRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGS 335
+++LL+ + NE + PL A V+C++MLL G+
Sbjct: 85 VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 126
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 10/132 (7%)
Query: 177 INFT-KDSYTPLHFAVLGNYVDCAKFLIKNKAHIH------ETIVHSAVSTNAVDCVQLL 229
IN T ++ +TPL +A + +FL++N A E+ + A S D V++L
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 88
Query: 230 LSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENG 289
L ++ N + G +PL A + C+K +L+SG AD I+T + ++ LA G
Sbjct: 89 LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG-ADPTIET-DSGYNSMDLAVALG 146
Query: 290 YVECLRILLENH 301
Y ++ ++E+H
Sbjct: 147 Y-RSVQQVIESH 157
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 66/150 (44%), Gaps = 2/150 (1%)
Query: 281 ALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNAS 340
++H A G + L +E N + + PL AA + +E LL+ G+
Sbjct: 6 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL 65
Query: 341 DCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIM 400
+ L + SK + +++LL G +VN D G +P+ A +CV L+
Sbjct: 66 GKGRESALSLACSKGYTDI--VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 123
Query: 401 HGADISSKTPSGSSALSIIMRNTPSSISSV 430
GAD + +T SG +++ + + S+ V
Sbjct: 124 SGADPTIETDSGYNSMDLAVALGYRSVQQV 153
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 274 TKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRK 333
T E T L AA +G + + LL+N A+ + L LA + ++MLL
Sbjct: 32 TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDC 91
Query: 334 GSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIA 386
G VN D + TPL ++ N V +++LL+ GA+ GY+ + +A
Sbjct: 92 GVDVNEYDWNGGTPLLYAVHGN--HVKCVKMLLESGADPTIETDSGYNSMDLA 142
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 289 GYVECLRILLENHAN-CNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTP 347
G +R+ L+N N N+ + PLH A + +EML+ +G+++N + + TP
Sbjct: 16 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP 75
Query: 348 LHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADIS 406
LH + S + ++ LL++ A++NA + G P+H A Q + L+ +GA +S
Sbjct: 76 LHLAASHGHRDI--VQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS 132
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 4/153 (2%)
Query: 221 NAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVT 280
NAV L + + + N ++ G SPLH A G + ++ ++ G A +++ + T
Sbjct: 17 NAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG-ARINVMNRGDD-T 74
Query: 281 ALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNAS 340
LHLAA +G+ + ++ LL+ A+ N N +PLH A + E L+ G+ V S
Sbjct: 75 PLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV--S 132
Query: 341 DCDNRTPLHASLSKNILSVHPLEILLKWGANVN 373
C+ + +K L E K G N+N
Sbjct: 133 ICNKYGEMPVDKAKAPLRELLRERAEKMGQNLN 165
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 335 SQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQC 394
+ +N D +PLH + + +V +E+L+ GA +N + +P+H+AA
Sbjct: 30 NDLNQGDDHGFSPLHWACREGRSAV--VEMLIMRGARINVMNRGDDTPLHLAASHGHRDI 87
Query: 395 VDCLIMHGADISSKTPSGSSAL 416
V L+ + ADI++ G+ L
Sbjct: 88 VQKLLQYKADINAVNEHGNVPL 109
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 10/114 (8%)
Query: 106 PDEMATLFSKASQAEKTTALLWCVFVKREDLLDALHQLGADLSNDKYGALHLAAFNGSIK 165
P+ M +F++ + LW ++ + L+Q G D + LH A G
Sbjct: 3 PEFMDDIFTQCREGNAVAVRLWL-----DNTENDLNQ-GDDHG---FSPLHWACREGRSA 53
Query: 166 GCSWLMLHGHDIN-FTKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAV 218
L++ G IN + TPLH A + D + L++ KA I+ H V
Sbjct: 54 VVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNV 107
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%)
Query: 289 GYVECLRILLENHAN-CNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTP 347
G +R+ L+N N N+ + PLH A + +EML+ +G+++N + + TP
Sbjct: 11 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTP 70
Query: 348 LHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADIS 406
LH + S + ++ LL++ A++NA + G P+H A Q + L+ +GA +S
Sbjct: 71 LHLAASHGHRDI--VQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS 127
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 4/153 (2%)
Query: 221 NAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVT 280
NAV L + + + N ++ G SPLH A G + ++ ++ G A +++ + T
Sbjct: 12 NAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG-ARINVMNRGDD-T 69
Query: 281 ALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNAS 340
LHLAA +G+ + ++ LL+ A+ N N +PLH A + E L+ G+ V S
Sbjct: 70 PLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV--S 127
Query: 341 DCDNRTPLHASLSKNILSVHPLEILLKWGANVN 373
C+ + +K L E K G N+N
Sbjct: 128 ICNKYGEMPVDKAKAPLRELLRERAEKMGQNLN 160
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 335 SQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQC 394
+ +N D +PLH + + +V +E+L+ GA +N + +P+H+AA
Sbjct: 25 NDLNQGDDHGFSPLHWACREGRSAV--VEMLIMRGARINVMNRGDDTPLHLAASHGHRDI 82
Query: 395 VDCLIMHGADISSKTPSGSSAL 416
V L+ + ADI++ G+ L
Sbjct: 83 VQKLLQYKADINAVNEHGNVPL 104
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 50.1 bits (118), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 44/72 (61%)
Query: 362 LEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMR 421
+ IL+ GA+VNA+D GY+P+H+AA + V+ L+ GAD++++ G +A I +
Sbjct: 18 VRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDISID 77
Query: 422 NTPSSISSVRKK 433
N ++ + +K
Sbjct: 78 NGNEDLAEILQK 89
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 318 AAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDI 377
AA+ + + +L+ G+ VNA D D TPLH + + L + +E+LLK GA+VNA+D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEI--VEVLLKAGADVNAQDK 66
Query: 378 FGYSPIHIA 386
FG + I+
Sbjct: 67 FGKTAFDIS 75
Score = 48.5 bits (114), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/68 (38%), Positives = 40/68 (58%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
AA G + +RIL+ N A+ N ++ PLHLAA+ +E +E+LL+ G+ VNA D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG 68
Query: 345 RTPLHASL 352
+T S+
Sbjct: 69 KTAFDISI 76
Score = 36.2 bits (82), Expect = 0.072, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 224 DCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALH 283
D V++L++ + N + G +PLH+AA G + ++ +L +G ADV+ + K + TA
Sbjct: 16 DEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG-ADVNAQDKFGK-TAFD 73
Query: 284 LAAENGYVECLRIL 297
++ +NG + IL
Sbjct: 74 ISIDNGNEDLAEIL 87
Score = 33.5 bits (75), Expect = 0.49, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 262 ILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERN 308
IL + ADV+ K K+ T LHLAA G++E + +LL+ A+ N ++
Sbjct: 20 ILMANGADVNAKDKDG-YTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Score = 32.7 bits (73), Expect = 0.88, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 170 LMLHGHDINFT-KDSYTPLHFAVLGNYVDCAKFLIKNKAHIH 210
LM +G D+N KD YTPLH A +++ + L+K A ++
Sbjct: 21 LMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN 62
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 3/85 (3%)
Query: 235 NPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECL 294
NP++ + G + +H AA G + L+ +L++ ADV+I+ E + LHLAA+ G++ +
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEN-QADVNIEDNEGNL-PLHLAAKEGHLRVV 119
Query: 295 RILLENHA-NCNERNHKEQIPLHLA 318
L+++ A N RNHK LA
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLA 144
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 268 ADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECM 327
A+ D+K + +H AA G+++ L+ LLEN A+ N +++ +PLHLAAK + +
Sbjct: 61 ANPDLKDRTG-FAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 328 EMLLR 332
E L++
Sbjct: 120 EFLVK 124
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 6/123 (4%)
Query: 185 TPLHFAVLGNYVDCAKFLIKN-----KAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVL 239
T L LGN + L++ K ++H A +D +Q LL Q + N+
Sbjct: 40 TALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIE 99
Query: 240 NNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLE 299
+N+G PLH+AA G + ++ ++ ++V + + TA LA G E + ++
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRN-HKGDTACDLARLYGRNEVVSLMQA 158
Query: 300 NHA 302
N A
Sbjct: 159 NGA 161
Score = 30.8 bits (68), Expect = 3.4, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 325 ECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIH 384
E LL +G+ + D +H + L L+ LL+ A+VN D G P+H
Sbjct: 51 EIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT--LQTLLENQADVNIEDNEGNLPLH 108
Query: 385 IAALSELSQCVDCLIMHGA-DISSKTPSGSSA 415
+AA + V+ L+ H A ++ + G +A
Sbjct: 109 LAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 46.6 bits (109), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 365 LLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTP 424
LLK GA+ N +D G SP+H AA + + L+ HGAD+++ +GS + + +R
Sbjct: 62 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 121
Query: 425 SSISS 429
SS+ S
Sbjct: 122 SSVVS 126
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 229 LLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAEN 288
LL +PNV + G SP+H AA G + LK +++ G ADV+ + +HLA
Sbjct: 62 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHG-ADVNALDSTGSL-PIHLAIRE 119
Query: 289 GYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEML 330
G+ + L ++ + R+ PL LA + + M++L
Sbjct: 120 GHSSVVS-FLAPESDLHHRDASGLTPLELARQRGAQNLMDIL 160
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 297 LLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNI 356
LL+ A+ N ++ P+H AA+ ++ +++L+ G+ VNA D P+H ++ +
Sbjct: 62 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 121
Query: 357 LSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMH 401
SV L ++++ RD G +P+ +A +D L H
Sbjct: 122 SSVVS---FLAPESDLHHRDASGLTPLELARQRGAQNLMDILQGH 163
Score = 29.6 bits (65), Expect = 7.7, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 214 VHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIK 273
VH A T +D +++L+ + N L++ G P+H+A G S + + + D+
Sbjct: 80 VHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL----APESDLH 135
Query: 274 TKERR-VTALHLAAENGYVECLRIL 297
++ +T L LA + G + IL
Sbjct: 136 HRDASGLTPLELARQRGAQNLMDIL 160
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 365 LLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTP 424
LLK GA+ N +D G SP+H AA + + L+ HGAD+++ +GS + + +R
Sbjct: 60 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 119
Query: 425 SSISS 429
SS+ S
Sbjct: 120 SSVVS 124
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 229 LLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAEN 288
LL +PNV + G SP+H AA G + LK +++ G ADV+ + +HLA
Sbjct: 60 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHG-ADVNALDSTGSL-PIHLAIRE 117
Query: 289 GYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEML 330
G+ + L ++ + R+ PL LA + + M++L
Sbjct: 118 GHSSVVS-FLAPESDLHHRDASGLTPLELARQRGAQNLMDIL 158
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 297 LLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNI 356
LL+ A+ N ++ P+H AA+ ++ +++L+ G+ VNA D P+H ++ +
Sbjct: 60 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGH 119
Query: 357 LSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMH 401
SV L ++++ RD G +P+ +A +D L H
Sbjct: 120 SSVVS---FLAPESDLHHRDASGLTPLELARQRGAQNLMDILQGH 161
Score = 29.6 bits (65), Expect = 7.7, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 214 VHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIK 273
VH A T +D +++L+ + N L++ G P+H+A G S + + + D+
Sbjct: 78 VHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL----APESDLH 133
Query: 274 TKERR-VTALHLAAENGYVECLRIL 297
++ +T L LA + G + IL
Sbjct: 134 HRDASGLTPLELARQRGAQNLMDIL 158
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 45.8 bits (107), Expect = 9e-05, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 333 KGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELS 392
KG VN + R PLH + L + LE LL GA++NA D +P+ A
Sbjct: 24 KGEDVNRTLEGGRKPLHYAADCGQLEI--LEFLLLKGADINAPDKHHITPLLSAVYEGHV 81
Query: 393 QCVDCLIMHGADISSKTPSGSSAL 416
CV L+ GAD + K P G +AL
Sbjct: 82 SCVKLLLSKGADKTVKGPDGLTAL 105
Score = 38.1 bits (87), Expect = 0.020, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 39/84 (46%)
Query: 273 KTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLR 332
+T E LH AA+ G +E L LL A+ N + PL A V C+++LL
Sbjct: 30 RTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLS 89
Query: 333 KGSQVNASDCDNRTPLHASLSKNI 356
KG+ D T L A+ ++ I
Sbjct: 90 KGADKTVKGPDGLTALEATDNQAI 113
Score = 36.6 bits (83), Expect = 0.056, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 243 GVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHA 302
G PLH AAD G + L+ +L G AD++ K +T L A G+V C+++LL A
Sbjct: 35 GRKPLHYAADCGQLEILEFLLLKG-ADINAPDKH-HITPLLSAVYEGHVSCVKLLLSKGA 92
Query: 303 N 303
+
Sbjct: 93 D 93
Score = 36.2 bits (82), Expect = 0.082, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 161 NGSIKGCSWLMLHGHDINFT-KDSYTPLHFAVLGNYVDCAKFLIKNKAHI------HETI 213
NG + + G D+N T + PLH+A ++ +FL+ A I H T
Sbjct: 12 NGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITP 71
Query: 214 VHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLK 260
+ SAV V CV+LLLS + V G++ L ++ + + L+
Sbjct: 72 LLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQAIKALLQ 118
Score = 34.7 bits (78), Expect = 0.26, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 155 LHLAAFNGSIKGCSWLMLHGHDINF-TKDSYTPLHFAVLGNYVDCAKFLIKNKA 207
LH AA G ++ +L+L G DIN K TPL AV +V C K L+ A
Sbjct: 39 LHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 92
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 235 NPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECL 294
NP++ + G + +H AA G + L+ +L+ ADV+I+ E + LHLAA+ G++ +
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEF-QADVNIEDNEGNL-PLHLAAKEGHLRVV 119
Query: 295 RILLENHA-NCNERNHKEQIPLHLA 318
L+++ A N RNHK LA
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLA 144
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 268 ADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECM 327
A+ D+K + +H AA G+++ L+ LLE A+ N +++ +PLHLAAK + +
Sbjct: 61 ANPDLKDRTG-FAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 328 EMLLR 332
E L++
Sbjct: 120 EFLVK 124
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 6/123 (4%)
Query: 185 TPLHFAVLGNYVDCAKFLIKN-----KAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVL 239
T L LGN + L++ K ++H A +D +Q LL Q + N+
Sbjct: 40 TALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE 99
Query: 240 NNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLE 299
+N+G PLH+AA G + ++ ++ ++V + + TA LA G E + ++
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRN-HKGDTACDLARLYGRNEVVSLMQA 158
Query: 300 NHA 302
N A
Sbjct: 159 NGA 161
Score = 32.7 bits (73), Expect = 0.87, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 325 ECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIH 384
E LL +G+ + D +H + L L+ LL++ A+VN D G P+H
Sbjct: 51 EIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT--LQTLLEFQADVNIEDNEGNLPLH 108
Query: 385 IAALSELSQCVDCLIMHGA-DISSKTPSGSSA 415
+AA + V+ L+ H A ++ + G +A
Sbjct: 109 LAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 235 NPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECL 294
NP++ + G + +H AA G + L+ +L+ ADV+I+ E + LHLAA+ G++ +
Sbjct: 62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEF-QADVNIEDNEGNL-PLHLAAKEGHLRVV 119
Query: 295 RILLENHA-NCNERNHKEQIPLHLA 318
L+++ A N RNHK LA
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLA 144
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 268 ADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECM 327
A+ D+K + +H AA G+++ L+ LLE A+ N +++ +PLHLAAK + +
Sbjct: 61 ANPDLKDRTG-FAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 328 EMLLR 332
E L++
Sbjct: 120 EFLVK 124
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 6/123 (4%)
Query: 185 TPLHFAVLGNYVDCAKFLIKN-----KAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVL 239
T L LGN + L++ K ++H A +D +Q LL Q + N+
Sbjct: 40 TALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE 99
Query: 240 NNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLE 299
+N+G PLH+AA G + ++ ++ ++V + + TA LA G E + ++
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRN-HKGDTACDLARLYGRNEVVSLMQA 158
Query: 300 NHA 302
N A
Sbjct: 159 NGA 161
Score = 32.7 bits (73), Expect = 0.87, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 325 ECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIH 384
E LL +G+ + D +H + L L+ LL++ A+VN D G P+H
Sbjct: 51 EIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT--LQTLLEFQADVNIEDNEGNLPLH 108
Query: 385 IAALSELSQCVDCLIMHGA-DISSKTPSGSSA 415
+AA + V+ L+ H A ++ + G +A
Sbjct: 109 LAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 308 NHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASD--CDNRTPLHASLSKNILSVHPLEIL 365
N+ PLH+A + E + +L G+ +N + C RTPLH ++ SV LE+L
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTC-GRTPLHLAVEAQAASV--LELL 211
Query: 366 LKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGA 403
LK GA+ AR G +P+ A L L HGA
Sbjct: 212 LKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 66/242 (27%), Positives = 94/242 (38%), Gaps = 31/242 (12%)
Query: 123 TALLWCVFVKREDLLDALHQLGA-----DLSND-KYGALHLAAFNGSIKGCSWLMLHGHD 176
TAL V + E LD L A DL ND ALHLAA G L G
Sbjct: 11 TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70
Query: 177 INFT-KDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCV----QLLLS 231
+ + +T LH A CA L++ + H T + DC +
Sbjct: 71 VLVAERGGHTALHLACRVRAHTCACVLLQPRPS-HPRDASDTYLTQSQDCTPDTSHAPAA 129
Query: 232 LQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYV 291
+ PN N + P D L+A G T LH+A +
Sbjct: 130 VDSQPNPENEE--EP----RDEDWRLQLEAENYDGH------------TPLHVAVIHKDA 171
Query: 292 ECLRILLENHANCNERNHK-EQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHA 350
E +R+L + A+ N+ + PLHLA + Q+ +E+LL+ G+ A RTPL +
Sbjct: 172 EMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGS 231
Query: 351 SL 352
+L
Sbjct: 232 AL 233
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 64/262 (24%), Positives = 107/262 (40%), Gaps = 46/262 (17%)
Query: 180 TKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVL 239
T+D T LH AV+ + FL+ A HE L LQ
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAG-HE-----------------YLDLQ------ 41
Query: 240 NNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERR-VTALHLAAENGYVECLRILL 298
N+ G + LH+AA G S ++ + +G + ER TALHLA C +LL
Sbjct: 42 NDLGQTALHLAAILGEASTVEKLYAAGAG---VLVAERGGHTALHLACRVRAHTCACVLL 98
Query: 299 E-------NHANCNERNHKEQIP--LHLAAKCQSVECMEMLLRKGS-----QVNASDCDN 344
+ + ++ ++ P H A S E Q+ A + D
Sbjct: 99 QPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG 158
Query: 345 RTPLHASLSKNILSVHPLEILLKWGANVNARD-IFGYSPIHIAALSELSQCVDCLIMHGA 403
TPLH ++ + +L GA++N + G +P+H+A ++ + ++ L+ GA
Sbjct: 159 HTPLHVAVIHK--DAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 404 DISSKTPSGSSAL-SIIMRNTP 424
D +++ G + L S ++R P
Sbjct: 217 DPTARMYGGRTPLGSALLRPNP 238
Score = 34.3 bits (77), Expect = 0.30, Method: Composition-based stats.
Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 13/161 (8%)
Query: 280 TALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLL-------R 332
TALHLAA G + L A LHLA + ++ C +LL R
Sbjct: 47 TALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPR 106
Query: 333 KGSQVNASDCDNRTPLHASLSKNILSVHPLEILLK-----WGANVNARDIFGYSPIHIAA 387
S + + TP + + S E + W + A + G++P+H+A
Sbjct: 107 DASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAV 166
Query: 388 LSELSQCVDCLIMHGADISSKTPS-GSSALSIIMRNTPSSI 427
+ + ++ V L GAD++ P+ G + L + + +S+
Sbjct: 167 IHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASV 207
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 308 NHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASD--CDNRTPLHASLSKNILSVHPLEIL 365
N+ PLH+A + E + +L G+ +N + C RTPLH ++ SV LE+L
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTC-GRTPLHLAVEAQAASV--LELL 211
Query: 366 LKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGA 403
LK GA+ AR G +P+ A L L HGA
Sbjct: 212 LKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 66/242 (27%), Positives = 94/242 (38%), Gaps = 31/242 (12%)
Query: 123 TALLWCVFVKREDLLDALHQLGA-----DLSND-KYGALHLAAFNGSIKGCSWLMLHGHD 176
TAL V + E LD L A DL ND ALHLAA G L G
Sbjct: 11 TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70
Query: 177 INFT-KDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCV----QLLLS 231
+ + +T LH A CA L++ + H T + DC +
Sbjct: 71 VLVAERGGHTALHLACRVRAHTCACVLLQPRPS-HPRDASDTYLTQSQDCTPDTSHAPAA 129
Query: 232 LQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYV 291
+ PN N + P D L+A G T LH+A +
Sbjct: 130 VDSQPNPENEE--EP----RDEDWRLQLEAENYDGH------------TPLHVAVIHKDA 171
Query: 292 ECLRILLENHANCNERNHK-EQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHA 350
E +R+L + A+ N+ + PLHLA + Q+ +E+LL+ G+ A RTPL +
Sbjct: 172 EMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGS 231
Query: 351 SL 352
+L
Sbjct: 232 AL 233
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 64/262 (24%), Positives = 107/262 (40%), Gaps = 46/262 (17%)
Query: 180 TKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVL 239
T+D T LH AV+ + FL+ A HE L LQ
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAG-HE-----------------YLDLQ------ 41
Query: 240 NNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERR-VTALHLAAENGYVECLRILL 298
N+ G + LH+AA G S ++ + +G + ER TALHLA C +LL
Sbjct: 42 NDLGQTALHLAAILGEASTVEKLYAAGAG---VLVAERGGHTALHLACRVRAHTCACVLL 98
Query: 299 E-------NHANCNERNHKEQIP--LHLAAKCQSVECMEMLLRKGS-----QVNASDCDN 344
+ + ++ ++ P H A S E Q+ A + D
Sbjct: 99 QPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG 158
Query: 345 RTPLHASLSKNILSVHPLEILLKWGANVNARD-IFGYSPIHIAALSELSQCVDCLIMHGA 403
TPLH ++ + +L GA++N + G +P+H+A ++ + ++ L+ GA
Sbjct: 159 HTPLHVAVIHK--DAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216
Query: 404 DISSKTPSGSSAL-SIIMRNTP 424
D +++ G + L S ++R P
Sbjct: 217 DPTARMYGGRTPLGSALLRPNP 238
Score = 34.3 bits (77), Expect = 0.30, Method: Composition-based stats.
Identities = 38/161 (23%), Positives = 66/161 (40%), Gaps = 13/161 (8%)
Query: 280 TALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLL-------R 332
TALHLAA G + L A LHLA + ++ C +LL R
Sbjct: 47 TALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPR 106
Query: 333 KGSQVNASDCDNRTPLHASLSKNILSVHPLEILLK-----WGANVNARDIFGYSPIHIAA 387
S + + TP + + S E + W + A + G++P+H+A
Sbjct: 107 DASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAV 166
Query: 388 LSELSQCVDCLIMHGADISSKTPS-GSSALSIIMRNTPSSI 427
+ + ++ V L GAD++ P+ G + L + + +S+
Sbjct: 167 IHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASV 207
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 235 NPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECL 294
NP++ + G + +H AA G + L+ +L+ ADV+I+ E + LHLAA+ G++ +
Sbjct: 62 NPDLKDRTGNAVIHDAARAGFLDTLQTLLEF-QADVNIEDNEGNL-PLHLAAKEGHLRVV 119
Query: 295 RILLENHA-NCNERNHKEQIPLHLA 318
L+++ A N RNHK LA
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLA 144
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 6/123 (4%)
Query: 185 TPLHFAVLGNYVDCAKFLIKN-----KAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVL 239
T L LGN + L++ K ++H A +D +Q LL Q + N+
Sbjct: 40 TALQVMKLGNPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIE 99
Query: 240 NNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLE 299
+N+G PLH+AA G + ++ ++ ++V + + TA LA G E + ++
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRN-HKGDTACDLARLYGRNEVVSLMQA 158
Query: 300 NHA 302
N A
Sbjct: 159 NGA 161
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 268 ADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECM 327
A+ D+K + +H AA G+++ L+ LLE A+ N +++ +PLHLAAK + +
Sbjct: 61 ANPDLKDRTGNAV-IHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 328 EMLLR 332
E L++
Sbjct: 120 EFLVK 124
Score = 33.5 bits (75), Expect = 0.45, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 325 ECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIH 384
E LL +G+ + D +H + L L+ LL++ A+VN D G P+H
Sbjct: 51 EIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDT--LQTLLEFQADVNIEDNEGNLPLH 108
Query: 385 IAALSELSQCVDCLIMHGA-DISSKTPSGSSA 415
+AA + V+ L+ H A ++ + G +A
Sbjct: 109 LAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 235 NPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECL 294
NP++ + G + +H AA G + L+ +L+ ADV+I+ E + LHLAA+ G++ +
Sbjct: 62 NPDLKDRTGFAVIHDAARAGQLDTLQTLLEF-QADVNIEDNEGNL-PLHLAAKEGHLRVV 119
Query: 295 RILLENHA-NCNERNHKEQIPLHLA 318
L+++ A N RNHK LA
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLA 144
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 6/123 (4%)
Query: 185 TPLHFAVLGNYVDCAKFLIKN-----KAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVL 239
T L LGN + L++ K ++H A +D +Q LL Q + N+
Sbjct: 40 TALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIE 99
Query: 240 NNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLE 299
+N+G PLH+AA G + ++ ++ ++V + + TA LA G E + ++
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRN-HKGDTACDLARLYGRNEVVSLMQA 158
Query: 300 NHA 302
N A
Sbjct: 159 NGA 161
Score = 38.9 bits (89), Expect = 0.013, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 268 ADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECM 327
A+ D+K + +H AA G ++ L+ LLE A+ N +++ +PLHLAAK + +
Sbjct: 61 ANPDLKDRTG-FAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 328 EMLLR 332
E L++
Sbjct: 120 EFLVK 124
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 3/92 (3%)
Query: 325 ECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIH 384
E LL +G+ + D +H + L L+ LL++ A+VN D G P+H
Sbjct: 51 EIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDT--LQTLLEFQADVNIEDNEGNLPLH 108
Query: 385 IAALSELSQCVDCLIMHGA-DISSKTPSGSSA 415
+AA + V+ L+ H A ++ + G +A
Sbjct: 109 LAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA 140
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 38/68 (55%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
AA G + +RIL+ N A+ ++ PLHLAA+ +E +++LL G+ VNA D
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFG 72
Query: 345 RTPLHASL 352
+T S+
Sbjct: 73 KTAFDISI 80
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 318 AAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDI 377
AA+ + + +L+ G+ V A D + TPLH + L V +++LL+ GA+VNA+D
Sbjct: 13 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEV--VKLLLEAGADVNAQDK 70
Query: 378 FGYSPIHIA 386
FG + I+
Sbjct: 71 FGKTAFDIS 79
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 40/69 (57%)
Query: 362 LEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMR 421
+ IL+ GA+V A+D G +P+H+AA + + V L+ GAD++++ G +A I +
Sbjct: 22 VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISID 81
Query: 422 NTPSSISSV 430
N ++ +
Sbjct: 82 NGNEDLAEI 90
Score = 36.6 bits (83), Expect = 0.061, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 10/70 (14%)
Query: 248 HIAADRG--LISCLKA-------ILDSGMADVDIKTKERRVTALHLAAENGYVECLRILL 298
H+ +D G L+ +A IL + ADV K K T LHLAA NG++E +++LL
Sbjct: 1 HMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGS-TPLHLAARNGHLEVVKLLL 59
Query: 299 ENHANCNERN 308
E A+ N ++
Sbjct: 60 EAGADVNAQD 69
Score = 35.4 bits (80), Expect = 0.15, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 224 DCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALH 283
D V++L++ + + G +PLH+AA G + +K +L++G ADV+ + K + TA
Sbjct: 20 DEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG-ADVNAQDKFGK-TAFD 77
Query: 284 LAAENGYVECLRIL 297
++ +NG + IL
Sbjct: 78 ISIDNGNEDLAEIL 91
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 333 KGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELS 392
KG VN + R PLH + L + LE LL GA++NA D +P+ A
Sbjct: 29 KGEDVNRTLEGGRKPLHYAADCGQLEI--LEFLLLKGADINAPDKHHITPLLSAVYEGHV 86
Query: 393 QCVDCLIMHGADISSKTPSGSSAL 416
CV L+ GAD + K P G +A
Sbjct: 87 SCVKLLLSKGADKTVKGPDGLTAF 110
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 2/87 (2%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
A +NG ++ ++ + + N + PLH AA C +E +E LL KG+ +NA D +
Sbjct: 14 ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHH 73
Query: 345 RTPLHASLSKNILSVHPLEILLKWGAN 371
TPL +++ + +S +++LL GA+
Sbjct: 74 ITPLLSAVYEGHVSC--VKLLLSKGAD 98
Score = 37.0 bits (84), Expect = 0.050, Method: Composition-based stats.
Identities = 26/84 (30%), Positives = 38/84 (45%)
Query: 273 KTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLR 332
+T E LH AA+ G +E L LL A+ N + PL A V C+++LL
Sbjct: 35 RTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLS 94
Query: 333 KGSQVNASDCDNRTPLHASLSKNI 356
KG+ D T A+ ++ I
Sbjct: 95 KGADKTVKGPDGLTAFEATDNQAI 118
Score = 37.0 bits (84), Expect = 0.051, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 243 GVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHA 302
G PLH AAD G + L+ +L G AD++ K +T L A G+V C+++LL A
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKG-ADINAPDKH-HITPLLSAVYEGHVSCVKLLLSKGA 97
Query: 303 N 303
+
Sbjct: 98 D 98
Score = 35.0 bits (79), Expect = 0.20, Method: Composition-based stats.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 161 NGSIKGCSWLMLHGHDINFT-KDSYTPLHFAVLGNYVDCAKFLIKNKAHI------HETI 213
NG + + G D+N T + PLH+A ++ +FL+ A I H T
Sbjct: 17 NGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITP 76
Query: 214 VHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLK 260
+ SAV V CV+LLLS + V G++ ++ + + L+
Sbjct: 77 LLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123
Score = 34.7 bits (78), Expect = 0.24, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 155 LHLAAFNGSIKGCSWLMLHGHDINF-TKDSYTPLHFAVLGNYVDCAKFLIKNKA 207
LH AA G ++ +L+L G DIN K TPL AV +V C K L+ A
Sbjct: 44 LHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 97
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 229 LLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAEN 288
LL +PNV + G SP+H AA G + LK +++ G ADV++ + +HLA +
Sbjct: 54 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHG-ADVNVPDGTGAL-PIHLAVQE 111
Query: 289 GYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEML 330
G+ + L ++ + R+ + PL LA + + + +++L
Sbjct: 112 GHTAVVS-FLAAESDLHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 365 LLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSI 418
LLK GA+ N +D G SP+H AA + + L+ HGAD++ P G+ AL I
Sbjct: 54 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN--VPDGTGALPI 105
Score = 38.1 bits (87), Expect = 0.019, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 297 LLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNI 356
LL+ A+ N ++ P+H AA+ ++ +++L+ G+ VN D P+H ++ +
Sbjct: 54 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 113
Query: 357 LSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMH 401
+V L ++++ RD G +P+ +A VD L H
Sbjct: 114 TAVVS---FLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 214 VHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIK 273
VH A T +D +++L+ + NV + G P+H+A G A++ A+ D+
Sbjct: 72 VHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG----HTAVVSFLAAESDLH 127
Query: 274 TKERR-VTALHLAAENGYVECLRIL 297
++ R +T L LA + G + + IL
Sbjct: 128 RRDARGLTPLELALQRGAQDLVDIL 152
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 229 LLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAEN 288
LL +PNV + G SP+H AA G + LK +++ G ADV++ + +HLA +
Sbjct: 60 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHG-ADVNVPDGTGAL-PIHLAVQE 117
Query: 289 GYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEML 330
G+ + L ++ + R+ + PL LA + + + +++L
Sbjct: 118 GHTAVVS-FLAAESDLHRRDARGLTPLELALQRGAQDLVDIL 158
Score = 43.9 bits (102), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 365 LLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSI 418
LLK GA+ N +D G SP+H AA + + L+ HGAD++ P G+ AL I
Sbjct: 60 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN--VPDGTGALPI 111
Score = 38.1 bits (87), Expect = 0.019, Method: Composition-based stats.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 297 LLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNI 356
LL+ A+ N ++ P+H AA+ ++ +++L+ G+ VN D P+H ++ +
Sbjct: 60 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGH 119
Query: 357 LSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMH 401
+V L ++++ RD G +P+ +A VD L H
Sbjct: 120 TAVVS---FLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 161
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 214 VHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIK 273
VH A T +D +++L+ + NV + G P+H+A G A++ A+ D+
Sbjct: 78 VHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG----HTAVVSFLAAESDLH 133
Query: 274 TKERR-VTALHLAAENGYVECLRIL 297
++ R +T L LA + G + + IL
Sbjct: 134 RRDARGLTPLELALQRGAQDLVDIL 158
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 323 SVECMEMLLRKGSQVN--ASDCDNRTPL-HASLSKNILSVHPLEILLKWGANVNARDIFG 379
S+ M L G+ VN DN TPL A+ + ++L+ E LL+ GANVN D G
Sbjct: 212 SLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLAC---EFLLQNGANVNQADSAG 268
Query: 380 YSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSI 427
P+H A + + + GAD+ ++ G L+I M + I
Sbjct: 269 RGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADI 316
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 282 LHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASD 341
+ A N + C LL+N AN N+ + + PLH A + L++G+ + A D
Sbjct: 240 IQATAANSLLAC-EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARD 298
Query: 342 CDNRTPL 348
+ R PL
Sbjct: 299 SEGRDPL 305
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 171 MLHGHDINFT---KDSYTPLHFAVLGNYVDCAKFLIKNKAHIHET------IVHSAVSTN 221
+ HG D+N+ +D+ TPL A N + +FL++N A++++ +H A
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 222 AVDCVQLLLSLQINPNVLNNKGVSPLHIA 250
L L + +++G PL IA
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIA 308
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 323 SVECMEMLLRKGSQVN--ASDCDNRTPL-HASLSKNILSVHPLEILLKWGANVNARDIFG 379
S+ M L G+ VN DN TPL A+ + ++L+ E LL+ GANVN D G
Sbjct: 212 SLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLAC---EFLLQNGANVNQADSAG 268
Query: 380 YSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSI 427
P+H A + + + GAD+ ++ G L+I M + I
Sbjct: 269 RGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADI 316
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 282 LHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASD 341
+ A N + C LL+N AN N+ + + PLH A + L++G+ + A D
Sbjct: 240 IQATAANSLLAC-EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARD 298
Query: 342 CDNRTPL 348
+ R PL
Sbjct: 299 SEGRDPL 305
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 171 MLHGHDINFT---KDSYTPLHFAVLGNYVDCAKFLIKNKAHIHET------IVHSAVSTN 221
+ HG D+N+ +D+ TPL A N + +FL++N A++++ +H A
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 222 AVDCVQLLLSLQINPNVLNNKGVSPLHIA 250
L L + +++G PL IA
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIA 308
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 51/108 (47%), Gaps = 6/108 (5%)
Query: 323 SVECMEMLLRKGSQVN--ASDCDNRTPL-HASLSKNILSVHPLEILLKWGANVNARDIFG 379
S+ M L G+ VN DN TPL A+ + ++L+ E LL+ GANVN D G
Sbjct: 212 SLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLAC---EFLLQNGANVNQADSAG 268
Query: 380 YSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSI 427
P+H A + + + GAD+ ++ G L+I M + I
Sbjct: 269 RGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADI 316
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 282 LHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASD 341
+ A N + C LL+N AN N+ + + PLH A + L++G+ + A D
Sbjct: 240 IQATAANSLLAC-EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARD 298
Query: 342 CDNRTPL 348
+ R PL
Sbjct: 299 SEGRDPL 305
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 171 MLHGHDINFT---KDSYTPLHFAVLGNYVDCAKFLIKNKAHIHET------IVHSAVSTN 221
+ HG D+N+ +D+ TPL A N + +FL++N A++++ +H A
Sbjct: 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG 279
Query: 222 AVDCVQLLLSLQINPNVLNNKGVSPLHIA 250
L L + +++G PL IA
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIA 308
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 42.7 bits (99), Expect = 9e-04, Method: Composition-based stats.
Identities = 37/105 (35%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
Query: 243 GVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHA 302
G +PL +AA L L+ +++S ADV+ + +ALH AA V+ +LL+N A
Sbjct: 15 GTTPLILAARLALEGMLEDLINS-HADVN-AVDDLGKSALHWAAAVNNVDAAVVLLKNGA 72
Query: 303 NCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTP 347
N + +N+KE+ PL LAA+ S E ++LL + + +D +R P
Sbjct: 73 NKDMQNNKEETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLP 117
Score = 33.9 bits (76), Expect = 0.42, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Query: 229 LLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAEN 288
L++ + N +++ G S LH AA + +L +G A+ D++ + T L LAA
Sbjct: 34 LINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNKEE-TPLFLAARE 91
Query: 289 GYVECLRILLENHANCNERNHKEQIPLHLA 318
G E ++LL++ AN + +H +++P +A
Sbjct: 92 GSYETAKVLLDHFANRDITDHMDRLPRDIA 121
Score = 29.6 bits (65), Expect = 7.8, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 3/108 (2%)
Query: 298 LENHA-NCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNI 356
L N A + + R H PL LAA+ +E L+ + VNA D ++ LH + + N
Sbjct: 1 LRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNN 60
Query: 357 LSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGAD 404
+ +LLK GAN + ++ +P+ +AA + L+ H A+
Sbjct: 61 VDAA--VVLLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDHFAN 106
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 72/173 (41%), Gaps = 16/173 (9%)
Query: 214 VHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIK 273
+H A D V+ L+ ++P + N G + LH+A G + K + G ++
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG----EVH 79
Query: 274 TKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRK 333
+ +HLA + + L+E ER Q P L +C E E+
Sbjct: 80 SLWHGQKPIHLAVXANKTDLVVALVE---GAKERG---QXPESLLNECDEREVNEI---- 129
Query: 334 GSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIA 386
GS V C +T LH + + ++IL++ GA+ A+D +P+ A
Sbjct: 130 GSHVK--HCKGQTALHWCVGLGPEYLEXIKILVQLGASPTAKDKADETPLXRA 180
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
AA G + +RIL+ N A+ ++ PLHLAA+ +E +++LL G+ V A D
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFG 90
Query: 345 RTPLHASL 352
+T S+
Sbjct: 91 KTAFDISI 98
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 39/69 (56%)
Query: 362 LEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMR 421
+ IL+ GA+V A+D G +P+H+AA + + V L+ GAD+ ++ G +A I +
Sbjct: 40 VRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID 99
Query: 422 NTPSSISSV 430
N ++ +
Sbjct: 100 NGNEDLAEI 108
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 318 AAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDI 377
AA+ + + +L+ G+ V A D + TPLH + L V +++LL+ GA+V A+D
Sbjct: 31 AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEV--VKLLLEAGADVXAQDK 88
Query: 378 FGYSPIHIA 386
FG + I+
Sbjct: 89 FGKTAFDIS 97
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 224 DCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALH 283
D V++L++ + + G +PLH+AA G + +K +L++G ADV + K + TA
Sbjct: 38 DEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG-ADVXAQDKFGK-TAFD 95
Query: 284 LAAENGYVECLRIL 297
++ +NG + IL
Sbjct: 96 ISIDNGNEDLAEIL 109
Score = 33.9 bits (76), Expect = 0.35, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 10/65 (15%)
Query: 248 HIAADRG--LISCLKA-------ILDSGMADVDIKTKERRVTALHLAAENGYVECLRILL 298
H+ +D G L+ +A IL + ADV K K T LHLAA NG++E +++LL
Sbjct: 19 HMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGS-TPLHLAARNGHLEVVKLLL 77
Query: 299 ENHAN 303
E A+
Sbjct: 78 EAGAD 82
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 212 TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVD 271
T +H+AV + V+ L+ +N N ++ G +PLH AA + K +++SG A
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131
Query: 272 IKTKERRVTALHLAA-ENGYVECLRIL 297
+ + + A E GY +C + L
Sbjct: 132 MTYSDMQTAADKCEEMEEGYTQCSQFL 158
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 279 VTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVN 338
+TALH A G+ E ++ L++ N N + PLH AA C +V+ + L+ G+ V
Sbjct: 71 ITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF 130
Query: 339 A 339
A
Sbjct: 131 A 131
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 14/110 (12%)
Query: 147 LSNDK-YGALHLAAFNGSIKGCSWLMLHGHDINFT-KDSYTPLHFAVLGNYVDCAKFLIK 204
L ND+ ALH A G + +L+ G ++N D +TPLH A N V KFL++
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVE 124
Query: 205 NKAHIHETIVHSAVSTNA----------VDCVQLLLSLQINPNVLNNKGV 244
+ A + + +S + T A C Q L +Q ++ NKGV
Sbjct: 125 SGAAVF-AMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIM-NKGV 172
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 315 LHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNA 374
LH A E ++ L++ G VNA+D D TPLH + S N + V + L++ GA V A
Sbjct: 74 LHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV--CKFLVESGAAVFA 131
Query: 375 RDIFGYSPIHIAA 387
YS + AA
Sbjct: 132 ---MTYSDMQTAA 141
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 346 TPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADI 405
T LH ++ + ++ L+++G NVNA D G++P+H AA Q L+ GA +
Sbjct: 72 TALHNAVCAGHTEI--VKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV 129
Query: 406 SSKTPS 411
+ T S
Sbjct: 130 FAMTYS 135
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 212 TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVD 271
T +H+AV + V+ L+ +N N ++ G +PLH AA + K +++SG A
Sbjct: 72 TALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131
Query: 272 IKTKERRVTALHLAA-ENGYVECLRIL 297
+ + + A E GY +C + L
Sbjct: 132 MTYSDMQTAADKCEEMEEGYTQCSQFL 158
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 279 VTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVN 338
+TALH A G+ E ++ L++ N N + PLH AA C +V+ + L+ G+ V
Sbjct: 71 ITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF 130
Query: 339 A 339
A
Sbjct: 131 A 131
Score = 37.4 bits (85), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 14/110 (12%)
Query: 147 LSNDK-YGALHLAAFNGSIKGCSWLMLHGHDINFT-KDSYTPLHFAVLGNYVDCAKFLIK 204
L ND+ ALH A G + +L+ G ++N D +TPLH A N V KFL++
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVE 124
Query: 205 NKAHIHETIVHSAVSTNA----------VDCVQLLLSLQINPNVLNNKGV 244
+ A + + +S + T A C Q L +Q ++ NKGV
Sbjct: 125 SGAAVF-AMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIM-NKGV 172
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 315 LHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNA 374
LH A E ++ L++ G VNA+D D TPLH + S N + V + L++ GA V A
Sbjct: 74 LHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV--CKFLVESGAAVFA 131
Query: 375 RDIFGYSPIHIAA 387
YS + AA
Sbjct: 132 ---MTYSDMQTAA 141
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 362 LEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPS 411
++ L+++G NVNA D G++P+H AA Q L+ GA + + T S
Sbjct: 86 VKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYS 135
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 75/181 (41%), Gaps = 28/181 (15%)
Query: 245 SPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANC 304
SPL +AA + L +L +V + TALH+AA +E +L+E
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGE-TALHIAALYDNLEAAMVLMEAAPEL 63
Query: 305 -----NERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSV 359
++ Q LH+A Q+V + LL +G+ V+A + ++
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARA-----------TGSVFHY 112
Query: 360 HPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSII 419
P ++ +G P+ AA + V LI HGADI ++ G++ L I+
Sbjct: 113 RPHNLI-----------YYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL 161
Query: 420 M 420
+
Sbjct: 162 I 162
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 7/97 (7%)
Query: 245 SPLHIAADRGLISCLKAILDS--GMADVDIKTKERRVTALHLAAENGYVECLRILL-ENH 301
+PLH AA RG +S L+ LD+ G+ +D + TAL+ A G+ + + L + +
Sbjct: 75 NPLHEAAKRGNLSWLRECLDNRVGVNGLD----KAGSTALYWACHGGHKDIVEXLFTQPN 130
Query: 302 ANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVN 338
N++N LH AA + +++LL KG++ +
Sbjct: 131 IELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTD 167
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 67/158 (42%), Gaps = 11/158 (6%)
Query: 176 DINFTKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQIN 235
D N+ K + + NYV +A + +H A + ++ L ++
Sbjct: 46 DTNWWKGTSKGRTGLIPSNYV-------AEQAESIDNPLHEAAKRGNLSWLRECLDNRVG 98
Query: 236 PNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLR 295
N L+ G + L+ A G ++ + +++ + K TALH AA GY + ++
Sbjct: 99 VNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNK-LGDTALHAAAWKGYADIVQ 157
Query: 296 ILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRK 333
+LL A + RN ++++ A + C +L +K
Sbjct: 158 LLLAKGARTDLRNIEKKLAFDXAT---NAACASLLKKK 192
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 53/100 (53%), Gaps = 3/100 (3%)
Query: 318 AAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDI 377
AA +E ++ +++ + + + + T LH ++ S+ ++ L+ GANVN+ D
Sbjct: 28 AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSI--VDFLITAGANVNSPDS 85
Query: 378 FGYSPIHIAALSELSQCVDCLIMHGADISSKTPS-GSSAL 416
G++P+H AA + L+ HGA I + T S G++A
Sbjct: 86 HGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAF 125
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 273 KTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKC-QSVECMEMLL 331
+ E +TALH A + L+ AN N + PLH AA C +V CM L+
Sbjct: 49 QPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICM-ALV 107
Query: 332 RKGSQVNAS 340
+ G+ + A+
Sbjct: 108 QHGAAIFAT 116
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 273 KTKERRVTALHL---AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEM 329
K + R+ L L AA G +E ++ ++ + ++ N + LH A + ++
Sbjct: 13 KARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDF 72
Query: 330 LLRKGSQVNASDCDNRTPLHASLSKN 355
L+ G+ VN+ D TPLH + S N
Sbjct: 73 LITAGANVNSPDSHGWTPLHCAASCN 98
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 36.2 bits (82), Expect = 0.081, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 7/117 (5%)
Query: 312 QIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGAN 371
+ P AA+ + + LL + V+A D + RT L + S + +L + GA+
Sbjct: 46 ETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTAL--LFVAGLGSDKCVRLLAEAGAD 102
Query: 372 VNARDIFG-YSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSI---IMRNTP 424
++ RD+ G + +H+AA + V+ L+ GADI + G +AL + I++ TP
Sbjct: 103 LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTP 159
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 237 NVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYV--ECL 294
+ ++ G + L A G C++ + ++G AD+D + +TALH+AA GYV E +
Sbjct: 71 DAVDENGRTALLFVAGLGSDKCVRLLAEAG-ADLDHRDMRGGLTALHMAA--GYVRPEVV 127
Query: 295 RILLENHANCNERNHKEQIPLHLA 318
L+E A+ + + L LA
Sbjct: 128 EALVELGADIEVEDERGLTALELA 151
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 36.2 bits (82), Expect = 0.081, Method: Composition-based stats.
Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 7/117 (5%)
Query: 312 QIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGAN 371
+ P AA+ + + LL + V+A D + RT L + S + +L + GA+
Sbjct: 45 ETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTAL--LFVAGLGSDKCVRLLAEAGAD 101
Query: 372 VNARDIFG-YSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSI---IMRNTP 424
++ RD+ G + +H+AA + V+ L+ GADI + G +AL + I++ TP
Sbjct: 102 LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTP 158
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 237 NVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYV--ECL 294
+ ++ G + L A G C++ + ++G AD+D + +TALH+AA GYV E +
Sbjct: 70 DAVDENGRTALLFVAGLGSDKCVRLLAEAG-ADLDHRDMRGGLTALHMAA--GYVRPEVV 126
Query: 295 RILLENHANCNERNHKEQIPLHLA 318
L+E A+ + + L LA
Sbjct: 127 EALVELGADIEVEDERGLTALELA 150
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 36.2 bits (82), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 30/138 (21%)
Query: 280 TALHLAAENGYVECLRILLENHAN-----CNERNHKEQ--------IPLHLAAKCQSVEC 326
+ALH+A E ++C+++L+EN A+ C K Q +PL LAA + +
Sbjct: 92 SALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDV 151
Query: 327 MEMLLRKGSQ---VNASDCDNRTPLHA-------SLSKNILSVHPLEILLKWGA----NV 372
+ LL Q + A+D T LHA S + L +H + LL+ GA V
Sbjct: 152 VTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTV 211
Query: 373 NARDIF---GYSPIHIAA 387
+I G +P+ +AA
Sbjct: 212 QLEEISNHQGLTPLKLAA 229
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 35.8 bits (81), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 25/103 (24%)
Query: 186 PLHFAVLGNYVDCAKFLIKN---------KAHIHETIVHS--AVSTNAVDCVQ------- 227
PL A N + KFL++N + + T++H+ V+ N VD +
Sbjct: 151 PLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSXYN 210
Query: 228 --LLLSLQINPN-----VLNNKGVSPLHIAADRGLISCLKAIL 263
L+L +++P + N KG++PL +AA G I L IL
Sbjct: 211 EILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYIL 253
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 30/141 (21%)
Query: 277 RRVTALHLAAENGYVECLRILLENHANCNERN-----HKEQ--------IPLHLAAKCQS 323
R +ALH+A E ++C+++L+EN AN + R K Q +PL LAA +
Sbjct: 94 RGHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQ 153
Query: 324 VECMEMLLRKGSQ---VNASDCDNRTPLHA------SLSKNI-LSVHPLEILLKWGANV- 372
+ + LL Q + A+D T LHA + ++NI L + LL+ GA +
Sbjct: 154 WDVVSYLLENPHQPASLQATDSQGNTVLHALVXISDNSAENIALVTSXYDGLLQAGARLC 213
Query: 373 ------NARDIFGYSPIHIAA 387
+ R++ +P+ +AA
Sbjct: 214 PTVQLEDIRNLQDLTPLKLAA 234
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 27/42 (64%)
Query: 301 HANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDC 342
+A C + ++ LH+A + +S++C+++L+ G+ V+A C
Sbjct: 85 NAQCTDDYYRGHSALHIAIEKRSLQCVKLLVENGANVHARAC 126
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 30/138 (21%)
Query: 280 TALHLAAENGYVECLRILLENHAN-----CNERNHKEQ--------IPLHLAAKCQSVEC 326
+ALH+A E ++C+++L+EN A+ C K Q +PL LAA + +
Sbjct: 105 SALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDV 164
Query: 327 MEMLLRKGSQ---VNASDCDNRTPLHA-------SLSKNILSVHPLEILLKWGA----NV 372
+ LL Q + A+D T LHA S + L +H + LL+ GA V
Sbjct: 165 VTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTV 224
Query: 373 NARDIF---GYSPIHIAA 387
+I G +P+ +AA
Sbjct: 225 QLEEISNHQGLTPLKLAA 242
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 280 TALHLAAENGYVECLRI---LLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQ 336
TALHLA + L I L++N N +++ K LH + EC+++LLR +
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230
Query: 337 VNASDCDNRTPLHASLSKNILSVHPLEILLK 367
+ ++ TPL ++K + H E+L +
Sbjct: 231 IEIANESGETPL--DIAKRLKHEHCEELLTQ 259
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 344 NRTPLH-ASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHG 402
+ T LH A S + S+H ++ L++ N++ + G + +H L++ ++C+ L+
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGK 228
Query: 403 ADISSKTPSGSSALSIIMR 421
A I SG + L I R
Sbjct: 229 ASIEIANESGETPLDIAKR 247
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 262 ILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKC 321
+ +SG D K + TALH ECL++LL A+ N + PL +A +
Sbjct: 192 VQNSGNLD---KQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRL 248
Query: 322 QSVECMEML 330
+ C E+L
Sbjct: 249 KHEHCEELL 257
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 185 TPLHFAVLG---NYVDCAKFLIKNKAHIHE------TIVHSAVSTNAVDCVQLLLSLQIN 235
T LH AV + FL++N ++ + T +H T+ +C++LLL + +
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS 230
Query: 236 PNVLNNKGVSPLHIA 250
+ N G +PL IA
Sbjct: 231 IEIANESGETPLDIA 245
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 33.1 bits (74), Expect = 0.62, Method: Composition-based stats.
Identities = 47/199 (23%), Positives = 85/199 (42%), Gaps = 44/199 (22%)
Query: 239 LNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILL 298
++ +G +PL+IA I KA++D G AD++++ L+ A+ G E L +L
Sbjct: 35 VDTEGNTPLNIAVHNNDIEIAKALIDRG-ADINLQNSISDSPYLYAGAQ-GRTEILAYML 92
Query: 299 ENHA--NCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNI 356
+ HA + N+ N L AA+ ++ +++LL G +
Sbjct: 93 K-HATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRE-------------------- 131
Query: 357 LSVHPLEILLKWGANVNARDIFGYSP-IHIAALSELSQ----CVDCLIMHGADISSKTPS 411
+++ ++ FGY+ I L E +Q V L+ +GAD S K S
Sbjct: 132 --------------DIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNS 177
Query: 412 GSSALSIIMRNTPSSISSV 430
G +A+ + + IS +
Sbjct: 178 GRTAMDYANQKGYTEISKI 196
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 33.1 bits (74), Expect = 0.66, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 359 VHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPS 411
V + LL+ GA+ NA + FG PI + + +Q + L++HGA+ + P+
Sbjct: 25 VETVRQLLEAGADPNALNRFGRRPIQVMMMGS-AQVAELLLLHGAEPNCADPA 76
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 174 GHDINFTKDSYTPLHFAVLGNYVDCAKFLIKNKAHI------HETIVHSAVSTNAVDCVQ 227
GH D T LH+A L N DC K L+K +A + ET + A + +C +
Sbjct: 198 GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEE 257
Query: 228 LLLSLQ 233
LL Q
Sbjct: 258 LLEQAQ 263
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 247 LHIA---ADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHAN 303
LH+A A++ + + I+ +G +D K + TALH AA +CL++LL+ A
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNG-GHLDAKAADGN-TALHYAALYNQPDCLKLLLKGRAL 232
Query: 304 CNERNHKEQIPLHLAAKCQSVECMEML 330
N + L +A K EC E+L
Sbjct: 233 VGTVNEAGETALDIARKKHHKECEELL 259
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 32.7 bits (73), Expect = 0.87, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 359 VHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPS 411
V + LL+ GAN NA + +G PI + + ++ + L++HGA+ + P+
Sbjct: 25 VEEVRALLEAGANPNAPNSYGRRPIQVMMMGS-ARVAELLLLHGAEPNCADPA 76
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 32.7 bits (73), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 174 GHDINFTKDSYTPLHFAVLGNYVDCAKFLIKNKAHI------HETIVHSAVSTNAVDCVQ 227
GH D T LH+A L N DC K L+K +A + ET + A + +C +
Sbjct: 217 GHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEE 276
Query: 228 LLLSLQ 233
LL Q
Sbjct: 277 LLEQAQ 282
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 247 LHIA---ADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHAN 303
LH+A A++ + + I+ +G +D K + TALH AA +CL++LL+ A
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNG-GHLDAKAADGN-TALHYAALYNQPDCLKLLLKGRAL 251
Query: 304 CNERNHKEQIPLHLAAKCQSVECMEML 330
N + L +A K EC E+L
Sbjct: 252 VGTVNEAGETALDIARKKHHKECEELL 278
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 201 FLIKNKAHIH------ETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRG 254
F+I+N H+ T +H A N DC++LLL + +N G + L IA +
Sbjct: 211 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKH 270
Query: 255 LISC 258
C
Sbjct: 271 HKEC 274
>pdb|4GFJ|A Chain A, Crystal Structure Of Topo-78, An N-Terminal 78kda Fragment
Of Topoisomerase V
Length = 685
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 661 EFLKLFQAYICLLVGFTLTFCIVFPSEDRFQNPIIGFIN 699
E L+L Q +I L + C + P+EDR+QN I+ +N
Sbjct: 51 ELLELHQNFILLTGSYA---CSIDPTEDRYQNVIVRGVN 86
>pdb|2CSD|A Chain A, Crystal Structure Of Topoisomerase V (61 Kda Fragment)
pdb|2CSD|B Chain B, Crystal Structure Of Topoisomerase V (61 Kda Fragment)
Length = 519
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 661 EFLKLFQAYICLLVGFTLTFCIVFPSEDRFQNPIIGFIN 699
E L+L Q +I L + C + P+EDR+QN I+ +N
Sbjct: 51 ELLELHQNFILLTGSYA---CSIDPTEDRYQNVIVRGVN 86
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 15/151 (9%)
Query: 304 CNERNHKEQIPLHLAA-KCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPL 362
C H E + HL + S ++ + VN +D + T LH S+S V +
Sbjct: 76 CRSDAHPELVRRHLVTFRAMSARLLDYV------VNIADSNGNTALHYSVSHANFPV--V 127
Query: 363 EILLKWGA-NVNARDIFGYSPIHIAALSELSQCVDC-----LIMHGADISSKTPSGSSAL 416
+ LL G V+ ++ GYSPI + AL+ L D L G + + +G +AL
Sbjct: 128 QQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTAL 187
Query: 417 SIIMRNTPSSISSVRKKLDSSISLQDPEAST 447
+ + + + ++ +++QD + ST
Sbjct: 188 MLAVSHGRVDVVKALLACEADVNVQDDDGST 218
>pdb|2CSB|A Chain A, Crystal Structure Of Topoisomerase V From Methanopyrus
Kandleri (61 Kda Fragment)
pdb|2CSB|B Chain B, Crystal Structure Of Topoisomerase V From Methanopyrus
Kandleri (61 Kda Fragment)
Length = 519
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 661 EFLKLFQAYICLLVGFTLTFCIVFPSEDRFQNPIIGFIN 699
E L+L Q +I L + C + P+EDR+QN I+ +N
Sbjct: 51 ELLELHQNFILLTGSYA---CSIDPTEDRYQNVIVRGVN 86
>pdb|3M6K|A Chain A, Crystal Structure Of N-Terminal 44 Kda Fragment Of
Topoisomerase V In The Presence Of Guanidium
Hydrochloride
pdb|3M6K|B Chain B, Crystal Structure Of N-Terminal 44 Kda Fragment Of
Topoisomerase V In The Presence Of Guanidium
Hydrochloride
pdb|3M6Z|A Chain A, Crystal Structure Of An N-Terminal 44 Kda Fragment Of
Topoisomerase V In The Presence Of Guanidium
Hydrochloride
pdb|3M6Z|B Chain B, Crystal Structure Of An N-Terminal 44 Kda Fragment Of
Topoisomerase V In The Presence Of Guanidium
Hydrochloride
pdb|3M7D|A Chain A, Crystal Structure Of An N-Terminal 44 Kda Fragment Of
Topoisomerase V In The Presence Of Dioxane
Length = 380
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 661 EFLKLFQAYICLLVGFTLTFCIVFPSEDRFQNPIIGFIN 699
E L+L Q +I L + C + P+EDR+QN I+ +N
Sbjct: 51 ELLELHQNFILLTGSYA---CSIDPTEDRYQNVIVRGVN 86
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 8/80 (10%)
Query: 344 NRTPLH-------ASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVD 396
NRT LH A S++++ VH + + GA+VNA D +P+ +A L+ + V
Sbjct: 125 NRTVLHWIASNSSAEKSEDLI-VHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVA 183
Query: 397 CLIMHGADISSKTPSGSSAL 416
L GAD + S SAL
Sbjct: 184 YLXKAGADPTIYNKSERSAL 203
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 100/288 (34%), Gaps = 70/288 (24%)
Query: 155 LHLAAFNGSIKGCSWLMLH--------GHDINFTK-DSYTPLHFAVLGNYVDCAKFLIKN 205
LH A N S + L++H G D+N D TPL AVL +L K
Sbjct: 129 LHWIASNSSAEKSEDLIVHEAKECIAAGADVNAXDCDENTPLXLAVLARRRRLVAYLXKA 188
Query: 206 KAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDS 265
A +P + N S LH AA L+S
Sbjct: 189 GA---------------------------DPTIYNKSERSALHQAAANRDFGXXVYXLNS 221
Query: 266 GMADVDIKTKERR-VTALHLAAEN---GYVECLRILLENHANCNERNHKEQIPLHLAAKC 321
DI+ +R TAL + A N V ++L+E A +
Sbjct: 222 TKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVD---------------- 265
Query: 322 QSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILL--KWGANVNARDIFG 379
+ RK S+ RT LH + +S P+ L + G+N + +D G
Sbjct: 266 -----YDGAARKDSE----KYKGRTALHYAAQ---VSNXPIVKYLVGEKGSNKDKQDEDG 313
Query: 380 YSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSI 427
+PI +AA + V LI GA + + + +A + N +I
Sbjct: 314 KTPIXLAAQEGRIEVVXYLIQQGASVEAVDATDHTARQLAQANNHHNI 361
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 279 VTALHLAAENGYVECLRILLENHANCNERNHKEQIP-LHLAAKCQSVECMEMLLRKGSQV 337
++ +H+ +NG+V+ +LL+ + N N IP + LA + +E ++ L + +
Sbjct: 162 LSCIHITIKNGHVDXXILLLDYXTSTNTNNSLLFIPDIKLAIDNKDIEXLQALFKYDINI 221
Query: 338 NASDCDNRTPLHASLSKNILSVH 360
+++ +N A ++K I+ H
Sbjct: 222 YSANLENVLLDDAEIAKXIIEKH 244
>pdb|3M7G|A Chain A, Structure Of Topoisomerase Domain Of Topoisomerase V
Protein
Length = 269
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 661 EFLKLFQAYICLLVGFTLTFCIVFPSEDRFQNPIIGFIN 699
E L+L Q +I L + C + P+EDR+QN I+ +N
Sbjct: 51 ELLELHQNFILLTGSYA---CSIDPTEDRYQNVIVRGVN 86
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 223 VDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMAD 269
+ C +L + +LNN G+SPL +AA G I + I+ +AD
Sbjct: 206 IKCAKLFPDTNLEA-LLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD 251
>pdb|2AJA|A Chain A, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21.
pdb|2AJA|B Chain B, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21
Length = 376
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 37/80 (46%)
Query: 220 TNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRV 279
++A+D + LLL+ V+ + +AA+ G + L + + ++ +
Sbjct: 105 SSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIXAXIQAENY 164
Query: 280 TALHLAAENGYVECLRILLE 299
A LAAENG++ L L E
Sbjct: 165 HAFRLAAENGHLHVLNRLCE 184
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,676,282
Number of Sequences: 62578
Number of extensions: 878902
Number of successful extensions: 2999
Number of sequences better than 100.0: 123
Number of HSP's better than 100.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1720
Number of HSP's gapped (non-prelim): 607
length of query: 854
length of database: 14,973,337
effective HSP length: 107
effective length of query: 747
effective length of database: 8,277,491
effective search space: 6183285777
effective search space used: 6183285777
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)