Query psy817
Match_columns 854
No_of_seqs 628 out of 4702
Neff 9.7
Searched_HMMs 29240
Date Fri Aug 16 20:23:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy817.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/817hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 4.6E-51 1.6E-55 460.5 40.8 319 116-438 42-370 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 4.9E-51 1.7E-55 460.3 39.6 367 56-436 25-401 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 4.3E-44 1.5E-48 388.7 34.2 283 118-408 22-330 (337)
4 4g8k_A 2-5A-dependent ribonucl 100.0 3.4E-42 1.2E-46 373.7 32.7 286 150-443 24-332 (337)
5 1wdy_A 2-5A-dependent ribonucl 100.0 1.6E-41 5.4E-46 358.9 32.1 261 120-410 4-284 (285)
6 3utm_A Tankyrase-1; tankyrase, 100.0 2.9E-41 1E-45 368.6 30.2 288 117-420 20-321 (351)
7 1wdy_A 2-5A-dependent ribonucl 100.0 1.3E-40 4.6E-45 351.8 31.9 265 90-376 4-283 (285)
8 3utm_A Tankyrase-1; tankyrase, 100.0 1.1E-38 3.8E-43 348.1 31.9 326 65-423 11-350 (351)
9 2fo1_E LIN-12 protein; beta-ba 100.0 1.1E-39 3.8E-44 358.4 19.3 275 122-404 67-371 (373)
10 3d9h_A CDNA FLJ77766, highly s 100.0 1.4E-38 4.8E-43 335.9 25.3 256 117-407 11-282 (285)
11 2fo1_E LIN-12 protein; beta-ba 100.0 2.4E-39 8.1E-44 355.8 19.6 304 122-435 38-369 (373)
12 2xai_A ASB-9, ankyrin repeat a 100.0 4.9E-38 1.7E-42 327.5 25.5 248 120-399 2-258 (261)
13 3ljn_A Hypothetical protein; a 100.0 1.4E-39 4.8E-44 357.2 13.5 286 112-408 11-318 (364)
14 2xai_A ASB-9, ankyrin repeat a 100.0 5.3E-38 1.8E-42 327.2 23.0 240 150-424 2-250 (261)
15 3d9h_A CDNA FLJ77766, highly s 100.0 6.2E-37 2.1E-41 323.3 24.6 216 210-433 59-274 (285)
16 1yyh_A HN1;, notch 1, ankyrin 100.0 7.1E-37 2.4E-41 317.2 23.4 190 210-402 57-246 (253)
17 1oy3_D Transcription factor in 100.0 4.6E-37 1.6E-41 324.3 22.3 238 116-354 4-268 (282)
18 3ljn_A Hypothetical protein; a 100.0 5.7E-37 1.9E-41 336.4 19.0 246 148-425 17-302 (364)
19 1yyh_A HN1;, notch 1, ankyrin 100.0 2.9E-36 9.8E-41 312.7 21.9 217 115-333 4-245 (253)
20 1k1a_A B-cell lymphoma 3-encod 100.0 5.7E-36 1.9E-40 308.1 23.1 226 116-367 4-237 (241)
21 3b7b_A Euchromatic histone-lys 100.0 4.2E-35 1.4E-39 300.8 26.7 220 150-399 10-230 (237)
22 1oy3_D Transcription factor in 100.0 8E-36 2.7E-40 314.8 21.9 247 148-424 6-270 (282)
23 3aji_A 26S proteasome non-ATPa 100.0 4.1E-35 1.4E-39 299.5 23.2 226 150-405 5-231 (231)
24 1k1a_A B-cell lymphoma 3-encod 100.0 3.1E-35 1.1E-39 302.5 22.0 226 148-403 6-240 (241)
25 3b7b_A Euchromatic histone-lys 100.0 1.5E-34 5.3E-39 296.5 26.4 213 210-426 11-224 (237)
26 3kea_A K1L; tropism, ANK repea 100.0 1.6E-35 5.4E-40 312.4 18.8 239 132-409 11-251 (285)
27 3kea_A K1L; tropism, ANK repea 100.0 1.1E-35 3.6E-40 313.8 17.4 224 115-377 25-252 (285)
28 1s70_B 130 kDa myosin-binding 100.0 3.6E-35 1.2E-39 312.7 20.1 251 127-388 4-274 (299)
29 4b93_B Ankyrin repeat domain-c 100.0 1.4E-35 4.9E-40 309.0 15.8 233 150-404 10-244 (269)
30 3eu9_A Huntingtin-interacting 100.0 4.6E-34 1.6E-38 293.4 24.9 219 117-336 5-235 (240)
31 3aji_A 26S proteasome non-ATPa 100.0 3.8E-34 1.3E-38 292.4 23.1 222 210-435 6-228 (231)
32 4b93_B Ankyrin repeat domain-c 100.0 1.2E-34 3.9E-39 302.2 19.6 230 183-437 11-241 (269)
33 2dzn_A Probable 26S proteasome 100.0 5.5E-34 1.9E-38 290.5 23.1 211 210-422 2-218 (228)
34 2f8y_A Notch homolog 1, transl 100.0 5.5E-34 1.9E-38 289.4 22.6 216 161-406 1-218 (223)
35 1sw6_A Regulatory protein SWI6 100.0 4.9E-36 1.7E-40 322.9 7.5 266 131-422 29-326 (327)
36 3eu9_A Huntingtin-interacting 100.0 3.7E-33 1.3E-37 286.6 26.4 224 210-435 9-233 (240)
37 2dzn_A Probable 26S proteasome 100.0 1.6E-33 5.6E-38 287.0 23.5 215 121-367 2-226 (228)
38 1s70_B 130 kDa myosin-binding 100.0 3.4E-34 1.2E-38 305.2 18.5 262 157-430 4-283 (299)
39 2f8y_A Notch homolog 1, transl 100.0 1.7E-32 5.8E-37 278.4 22.0 214 220-437 1-216 (223)
40 1sw6_A Regulatory protein SWI6 100.0 1.8E-34 6.2E-39 310.6 4.2 229 116-390 47-327 (327)
41 2rfa_A Transient receptor pote 100.0 7.9E-32 2.7E-36 275.3 22.4 196 210-408 3-226 (232)
42 2rfa_A Transient receptor pote 100.0 8.8E-31 3E-35 267.6 21.3 199 121-335 3-221 (232)
43 1ikn_D Protein (I-kappa-B-alph 100.0 7.4E-32 2.5E-36 276.3 13.2 214 116-351 3-226 (236)
44 3hra_A Ankyrin repeat family p 100.0 3.8E-30 1.3E-34 256.5 24.1 191 210-402 5-201 (201)
45 1ikn_D Protein (I-kappa-B-alph 100.0 7.6E-32 2.6E-36 276.2 12.0 211 182-419 7-226 (236)
46 2etb_A Transient receptor pote 100.0 1.6E-31 5.6E-36 277.4 14.4 196 210-406 2-248 (256)
47 4gpm_A Engineered protein OR26 100.0 8.9E-30 3E-34 244.5 20.4 158 246-407 7-164 (169)
48 2pnn_A Transient receptor pote 100.0 9.8E-31 3.4E-35 274.4 14.6 210 182-415 12-270 (273)
49 3hra_A Ankyrin repeat family p 100.0 2.9E-29 9.8E-34 250.1 24.3 191 149-369 3-201 (201)
50 4gpm_A Engineered protein OR26 100.0 1.7E-29 5.9E-34 242.5 20.8 159 212-374 6-164 (169)
51 2aja_A Ankyrin repeat family p 100.0 1.7E-32 5.7E-37 297.6 -0.5 267 121-431 65-368 (376)
52 2pnn_A Transient receptor pote 100.0 2.7E-30 9.3E-35 271.0 14.4 103 278-382 148-270 (273)
53 2etb_A Transient receptor pote 100.0 3.9E-30 1.3E-34 267.1 15.2 184 151-335 2-245 (256)
54 3jxi_A Vanilloid receptor-rela 100.0 1.4E-29 4.9E-34 263.4 11.8 196 210-407 5-253 (260)
55 3jxi_A Vanilloid receptor-rela 100.0 5E-29 1.7E-33 259.3 13.6 185 150-335 4-249 (260)
56 2aja_A Ankyrin repeat family p 100.0 1.8E-30 6.1E-35 281.7 -0.7 242 119-400 90-370 (376)
57 4hbd_A KN motif and ankyrin re 99.9 4.6E-28 1.6E-32 253.9 14.3 189 211-402 77-273 (276)
58 3v30_A DNA-binding protein rfx 99.9 1.9E-27 6.4E-32 230.5 17.1 170 243-415 2-171 (172)
59 2rfm_A Putative ankyrin repeat 99.9 7.5E-27 2.6E-31 230.7 18.1 163 236-402 28-190 (192)
60 3v30_A DNA-binding protein rfx 99.9 1.2E-26 4.1E-31 224.8 16.2 168 211-382 3-171 (172)
61 3v31_A Ankyrin repeat family A 99.9 2.4E-26 8.1E-31 221.5 17.7 161 242-406 2-162 (167)
62 3f6q_A Integrin-linked protein 99.9 2E-26 6.8E-31 224.8 17.2 169 241-412 3-171 (179)
63 2y1l_E Darpin-8.4; hydrolase-i 99.9 4.8E-26 1.6E-30 219.8 19.2 156 243-402 14-169 (169)
64 1ihb_A P18-INK4C(INK6), cyclin 99.9 2.3E-26 7.8E-31 220.4 16.5 156 244-404 6-162 (162)
65 2vge_A RELA-associated inhibit 99.9 3.5E-29 1.2E-33 254.2 -3.7 179 212-397 23-206 (229)
66 2y1l_E Darpin-8.4; hydrolase-i 99.9 9.4E-26 3.2E-30 217.7 20.0 156 210-369 14-169 (169)
67 2rfm_A Putative ankyrin repeat 99.9 5.3E-26 1.8E-30 224.6 17.8 167 199-369 24-190 (192)
68 1ihb_A P18-INK4C(INK6), cyclin 99.9 6.7E-26 2.3E-30 217.1 17.1 157 210-371 5-162 (162)
69 1awc_B Protein (GA binding pro 99.9 1.2E-25 4.1E-30 213.1 18.0 150 244-398 3-152 (153)
70 4hbd_A KN motif and ankyrin re 99.9 7.1E-26 2.4E-30 237.2 17.8 188 151-369 76-273 (276)
71 3twr_A Tankyrase-2; ankyrin re 99.9 3.9E-26 1.3E-30 219.5 14.1 161 239-403 4-164 (165)
72 3v31_A Ankyrin repeat family A 99.9 2.2E-25 7.7E-30 214.6 19.1 156 277-434 2-157 (167)
73 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.1E-26 3.7E-31 238.0 8.8 156 150-306 4-167 (239)
74 3f6q_A Integrin-linked protein 99.9 2E-25 6.9E-30 217.7 17.4 166 210-379 5-171 (179)
75 1awc_B Protein (GA binding pro 99.9 4.9E-25 1.7E-29 208.9 18.7 149 280-431 4-152 (153)
76 1bd8_A P19INK4D CDK4/6 inhibit 99.9 4.4E-25 1.5E-29 209.9 17.5 154 243-401 2-155 (156)
77 2vge_A RELA-associated inhibit 99.9 1.3E-27 4.5E-32 242.6 -0.3 196 226-428 1-204 (229)
78 1ycs_B 53BP2, P53BP2; ankyrin 99.9 2.5E-26 8.5E-31 235.4 7.6 179 241-424 3-193 (239)
79 3twr_A Tankyrase-2; ankyrin re 99.9 1.8E-24 6.1E-29 207.9 16.3 156 210-370 8-164 (165)
80 1bd8_A P19INK4D CDK4/6 inhibit 99.9 5E-24 1.7E-28 202.6 18.0 152 211-368 3-155 (156)
81 3t8k_A Uncharacterized protein 99.9 7.2E-25 2.5E-29 214.0 9.4 164 243-409 6-184 (186)
82 1d9s_A Cyclin-dependent kinase 99.9 9E-24 3.1E-28 195.6 13.9 134 267-404 2-136 (136)
83 1bi7_B P16INK4A, MTS1, multipl 99.9 4.8E-24 1.6E-28 202.7 11.8 141 276-419 10-151 (156)
84 1bi7_B P16INK4A, MTS1, multipl 99.9 3.9E-23 1.4E-27 196.3 11.1 137 210-349 12-149 (156)
85 1d9s_A Cyclin-dependent kinase 99.9 9.3E-23 3.2E-27 188.8 12.9 134 233-371 2-136 (136)
86 3t8k_A Uncharacterized protein 99.9 2.9E-23 1E-27 202.6 9.6 159 151-334 6-177 (186)
87 1n0r_A 4ANK, 4 ankyrin repeats 99.9 4.1E-22 1.4E-26 181.6 16.3 125 278-404 2-126 (126)
88 2jab_A H10-2-G3; HER2, darpin, 99.9 2.9E-22 1E-26 185.4 15.1 125 276-402 12-136 (136)
89 2jab_A H10-2-G3; HER2, darpin, 99.9 2.1E-21 7E-26 179.7 15.1 123 210-334 14-136 (136)
90 1n0r_A 4ANK, 4 ankyrin repeats 99.9 4E-21 1.4E-25 174.9 15.6 125 210-336 2-126 (126)
91 3deo_A Signal recognition part 99.8 2E-22 6.7E-27 197.1 3.1 140 240-401 41-181 (183)
92 3c5r_A BARD-1, BRCA1-associate 99.8 1.6E-21 5.5E-26 180.7 8.5 121 278-400 10-130 (137)
93 3ui2_A Signal recognition part 99.8 1.9E-22 6.4E-27 207.0 1.9 141 243-405 45-186 (244)
94 3c5r_A BARD-1, BRCA1-associate 99.8 3.8E-21 1.3E-25 178.2 9.7 126 301-429 1-126 (137)
95 2b0o_E UPLC1; arfgap, structur 99.8 3.7E-20 1.3E-24 195.5 16.4 137 280-424 153-298 (301)
96 3deo_A Signal recognition part 99.8 2.1E-20 7.2E-25 182.6 13.0 138 210-368 44-181 (183)
97 3ui2_A Signal recognition part 99.8 1.2E-20 4.1E-25 193.4 11.2 139 210-369 45-183 (244)
98 3ehr_A Osteoclast-stimulating 99.8 8.6E-21 2.9E-25 191.8 9.4 135 276-412 71-206 (222)
99 3aaa_C Myotrophin, protein V-1 99.8 2.1E-20 7.3E-25 169.5 10.7 107 278-386 7-113 (123)
100 2b0o_E UPLC1; arfgap, structur 99.8 4.2E-20 1.4E-24 195.1 12.0 137 211-355 152-297 (301)
101 3ehr_A Osteoclast-stimulating 99.8 4.5E-20 1.5E-24 186.5 10.4 135 209-344 72-206 (222)
102 3aaa_C Myotrophin, protein V-1 99.8 1.9E-19 6.5E-24 163.1 13.2 112 307-420 3-114 (123)
103 1dcq_A PYK2-associated protein 99.8 4.7E-19 1.6E-23 184.9 16.3 125 279-405 131-264 (278)
104 3lvq_E ARF-GAP with SH3 domain 99.8 6.5E-19 2.2E-23 200.2 16.2 127 280-408 134-269 (497)
105 3jue_A Arfgap with coiled-coil 99.8 1E-18 3.5E-23 188.5 14.5 142 278-421 199-346 (368)
106 3jue_A Arfgap with coiled-coil 99.8 8.2E-19 2.8E-23 189.3 13.6 144 210-355 199-348 (368)
107 1dcq_A PYK2-associated protein 99.8 4.4E-18 1.5E-22 177.5 18.3 123 212-336 132-263 (278)
108 1n0q_A 3ANK, 3 ankyrin repeats 99.8 2.3E-18 7.9E-23 147.3 12.5 93 310-404 1-93 (93)
109 3lvq_E ARF-GAP with SH3 domain 99.8 5.2E-18 1.8E-22 192.8 15.5 135 211-353 133-276 (497)
110 2l6b_A NR1C; ankyrin, consensu 99.7 2.5E-18 8.5E-23 153.7 9.3 108 306-415 4-111 (115)
111 1n0q_A 3ANK, 3 ankyrin repeats 99.7 1E-17 3.4E-22 143.3 12.0 91 243-335 2-92 (93)
112 2l6b_A NR1C; ankyrin, consensu 99.7 1.2E-17 4.1E-22 149.2 9.6 105 276-382 7-111 (115)
113 2zgd_A 3 repeat synthetic anky 99.6 3.3E-15 1.1E-19 131.9 9.9 91 306-398 19-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.5 1.5E-14 5E-19 127.7 10.5 85 278-364 24-108 (110)
115 4dxw_A Navrh, ION transport pr 99.4 1.5E-12 5.1E-17 131.1 13.3 184 560-761 43-228 (229)
116 3rvy_A ION transport protein; 99.4 4.2E-12 1.4E-16 132.4 15.1 186 560-766 62-249 (285)
117 2r9r_B Paddle chimera voltage 98.7 1.1E-07 3.7E-12 106.5 16.1 187 560-762 240-434 (514)
118 4f4l_A ION transport protein; 98.7 2.3E-08 7.8E-13 86.7 6.4 101 662-767 6-108 (112)
119 3beh_A MLL3241 protein; transm 98.2 4.2E-05 1.4E-09 82.1 18.1 151 589-760 66-218 (355)
120 1orq_C Potassium channel; volt 97.6 0.0026 8.9E-08 62.9 18.2 177 560-758 40-220 (223)
121 3vou_A ION transport 2 domain 92.8 1.1 3.6E-05 40.5 11.7 77 663-754 27-103 (148)
122 2a9h_A Voltage-gated potassium 92.3 0.53 1.8E-05 42.8 8.8 84 666-760 56-141 (155)
123 2ih3_C Voltage-gated potassium 90.9 2.8 9.6E-05 36.2 11.7 85 667-762 34-120 (122)
124 1ors_C Potassium channel; volt 84.2 2.4 8.2E-05 37.3 7.1 42 561-607 39-80 (132)
125 3eff_K Voltage-gated potassium 84.1 21 0.00073 31.3 17.3 90 661-761 7-98 (139)
126 4h33_A LMO2059 protein; bilaye 74.0 3.3 0.00011 36.7 4.6 84 662-759 16-99 (137)
127 2q67_A Potassium channel prote 66.4 14 0.00047 31.3 6.7 78 664-756 25-102 (114)
128 2k1e_A Water soluble analogue 56.4 8.1 0.00028 32.1 3.4 90 662-762 8-99 (103)
129 2kyh_A KVAP, voltage-gated pot 54.2 50 0.0017 29.3 8.4 40 561-605 54-93 (147)
130 3ouf_A Potassium channel prote 53.8 35 0.0012 27.8 6.8 80 663-757 7-86 (97)
131 3um7_A Potassium channel subfa 49.7 61 0.0021 32.8 9.2 34 730-763 257-290 (309)
132 1xl4_A Inward rectifier potass 46.2 1E+02 0.0035 31.0 10.3 84 664-758 52-137 (301)
133 4g26_A Pentatricopeptide repea 35.8 43 0.0015 36.8 6.1 137 125-264 33-199 (501)
134 2qks_A KIR3.1-prokaryotic KIR 31.8 47 0.0016 33.9 5.1 31 731-761 106-136 (321)
135 4gx0_A TRKA domain protein; me 25.8 1.9E+02 0.0066 32.0 9.4 45 659-703 17-62 (565)
136 3mkq_B Coatomer subunit alpha; 24.4 3.5E+02 0.012 24.7 9.0 132 125-271 12-146 (177)
137 2kav_A Sodium channel protein 20.9 8.1 0.00028 33.4 -2.5 38 743-780 13-54 (129)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=4.6e-51 Score=460.49 Aligned_cols=319 Identities=28% Similarity=0.347 Sum_probs=239.4
Q ss_pred cccccCCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCccHHHHHHHcCCHHHHHHHHhCCCCccccC-CCccHHHHHH
Q psy817 116 ASQAEKTTALLWCVFVKREDLLDALHQLGADLSN---DKYGALHLAAFNGSIKGCSWLMLHGHDINFTK-DSYTPLHFAV 191 (854)
Q Consensus 116 ~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~---~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~-~g~t~L~~A~ 191 (854)
..+..|.||||+|+..|+.+++++|+++|+++|. +|.||||+|+..|+.+++++|+++|++++..+ .|.||||+|+
T Consensus 42 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~ 121 (437)
T 1n11_A 42 VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAA 121 (437)
T ss_dssp CSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHH
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Confidence 3455677777777777777777777777777654 67777777777777777777777777777654 4777777777
Q ss_pred hCCCHHHHHHHHhCCCCC------CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q psy817 192 LGNYVDCAKFLIKNKAHI------HETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDS 265 (854)
Q Consensus 192 ~~~~~~iv~~Ll~~~~~~------~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~ 265 (854)
..|+.+++++|++++++. |.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++
T Consensus 122 ~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 201 (437)
T 1n11_A 122 REGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR 201 (437)
T ss_dssp HHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGG
T ss_pred HcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 777777777777777654 56777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCccccccCCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCC
Q psy817 266 GMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNR 345 (854)
Q Consensus 266 ~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 345 (854)
+ ++++..+ ..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.
T Consensus 202 g-~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~ 279 (437)
T 1n11_A 202 G-GSPHSPA-WNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGL 279 (437)
T ss_dssp T-CCSCCCC-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCC
T ss_pred C-CCCCCcC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCC
Confidence 5 5555543 3455777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cHHHHHHhcCCCChHHHHHHHhCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHhcCCc
Q psy817 346 TPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPS 425 (854)
Q Consensus 346 t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~ 425 (854)
||||.|+..+ +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..++.
T Consensus 280 t~L~~A~~~~--~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~ 357 (437)
T 1n11_A 280 TPLHLVAQEG--HVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHT 357 (437)
T ss_dssp CHHHHHHHHT--CHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred CHHHHHHHcC--CHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChH
Confidence 7777777777 66777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred chHHhhhhcCCcc
Q psy817 426 SISSVRKKLDSSI 438 (854)
Q Consensus 426 ~~~~~~~~~~~~~ 438 (854)
+++.++...+...
T Consensus 358 ~iv~~Ll~~ga~~ 370 (437)
T 1n11_A 358 DIVTLLLKNGASP 370 (437)
T ss_dssp HHHHHHHHTTCCS
T ss_pred HHHHHHHHCcCCC
Confidence 7777666655443
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=4.9e-51 Score=460.28 Aligned_cols=367 Identities=27% Similarity=0.360 Sum_probs=323.3
Q ss_pred hhhcchhhhhccccchhhchhhhHHHHHHHHHhcCCChHHHHHHHcCCCChhHHHHHhhhcccccCCcHHHHHHHcCCHH
Q psy817 56 MRTDSLEETISDELSYKVCKESIRASLLEAMKMSSGDVNVLYAIENSLYEPDEMATLFSKASQAEKTTALLWCVFVKRED 135 (854)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~Aa~~g~~~ 135 (854)
+..+.++.++..+.+.+..+.....+|+.++ ..|+..+++.+.....+ .+..+..|.||||+|+..|+.+
T Consensus 25 g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~--~~g~~~~v~~Ll~~g~~--------~~~~~~~g~t~L~~A~~~g~~~ 94 (437)
T 1n11_A 25 GHLPIVKNLLQRGASPNVSNVKVETPLHMAA--RAGHTEVAKYLLQNKAK--------VNAKAKDDQTPLHCAARIGHTN 94 (437)
T ss_dssp TCHHHHHHHHHTTCCSCCSSSCCCCHHHHHH--HHTCHHHHHHHHHHTCC--------SSCCCTTSCCHHHHHHHHTCHH
T ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH--HcCCHHHHHHHHhCCCC--------CCCCCCCCCCHHHHHHHCCCHH
Confidence 4445555666655555544444444555444 23444444443222111 1345678999999999999999
Q ss_pred HHHHHHHcCCCCCC---CCccHHHHHHHcCCHHHHHHHHhCCCCccccC-CCccHHHHHHhCCCHHHHHHHHhCCCCC--
Q psy817 136 LLDALHQLGADLSN---DKYGALHLAAFNGSIKGCSWLMLHGHDINFTK-DSYTPLHFAVLGNYVDCAKFLIKNKAHI-- 209 (854)
Q Consensus 136 iv~~Ll~~g~~~~~---~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~-~g~t~L~~A~~~~~~~iv~~Ll~~~~~~-- 209 (854)
++++|+++|++++. .|.||||+|+..|+.+++++|+++|++.+..+ .|.||||+|+..|+.+++++|+++|+++
T Consensus 95 ~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~ 174 (437)
T 1n11_A 95 MVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA 174 (437)
T ss_dssp HHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred HHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC
Confidence 99999999999865 89999999999999999999999999988655 5999999999999999999999999876
Q ss_pred ----CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHH
Q psy817 210 ----HETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLA 285 (854)
Q Consensus 210 ----~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A 285 (854)
|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++.+ ++++..+ ..|.||||+|
T Consensus 175 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~-~~g~t~L~~A 252 (437)
T 1n11_A 175 AGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG-GSANAES-VQGVTPLHLA 252 (437)
T ss_dssp CCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCC-TTCCCHHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCC-CCCCCHHHHH
Confidence 789999999999999999999999999999999999999999999999999999987 7888765 4567999999
Q ss_pred HHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHH
Q psy817 286 AENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEIL 365 (854)
Q Consensus 286 ~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~L 365 (854)
+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..| +.+++++|
T Consensus 253 ~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g--~~~~v~~L 330 (437)
T 1n11_A 253 AQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYG--NIKLVKFL 330 (437)
T ss_dssp HHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSS--CSHHHHHH
T ss_pred HHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcC--cHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 78889999
Q ss_pred HhCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHhcCCcchHHhhhhcCC
Q psy817 366 LKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLDS 436 (854)
Q Consensus 366 l~~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~ 436 (854)
+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|.+.+..+++.++.....
T Consensus 331 l~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~ 401 (437)
T 1n11_A 331 LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTD 401 (437)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHHCC
T ss_pred HhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999988888776543
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=4.3e-44 Score=388.69 Aligned_cols=283 Identities=25% Similarity=0.279 Sum_probs=258.1
Q ss_pred cccCCcHHHHHHHcCCHHHHHHHHHcCCCCCC----CCccHHHHHHHcCCHHHHHHHHhCCCCccccC-CCccHHHHHHh
Q psy817 118 QAEKTTALLWCVFVKREDLLDALHQLGADLSN----DKYGALHLAAFNGSIKGCSWLMLHGHDINFTK-DSYTPLHFAVL 192 (854)
Q Consensus 118 ~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~----~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~-~g~t~L~~A~~ 192 (854)
+.+|+|+||.|+.+|+.++|++|+++|+++|. .|+||||+||..|+.++|++|+++|++++..+ .+.+|++.++.
T Consensus 22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~ 101 (337)
T 4g8k_A 22 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAI 101 (337)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred CCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHh
Confidence 44578999999999999999999999999975 48999999999999999999999999999776 58999999999
Q ss_pred CCCHHHHHHHHhCCCCC------CchHHHHHHHcCCHHHHHHHHHCCCCCCCC----------CCCCCcHHHHHHHcCCH
Q psy817 193 GNYVDCAKFLIKNKAHI------HETIVHSAVSTNAVDCVQLLLSLQINPNVL----------NNKGVSPLHIAADRGLI 256 (854)
Q Consensus 193 ~~~~~iv~~Ll~~~~~~------~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----------d~~g~t~L~~A~~~g~~ 256 (854)
.++.+++..+++.++++ |.||+|.|+..|+.+++++|+++|++++.. +..|.||||+|+..|+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~ 181 (337)
T 4g8k_A 102 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 181 (337)
T ss_dssp HTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCH
T ss_pred cccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCH
Confidence 99999999999999876 789999999999999999999999998754 45689999999999999
Q ss_pred HHHHHHHHcCCCCccccccCCcCcHHHHHHHcCC----HHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHh
Q psy817 257 SCLKAILDSGMADVDIKTKERRVTALHLAAENGY----VECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLR 332 (854)
Q Consensus 257 ~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~----~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 332 (854)
+++++|+++.+++++.++. .|.|+++.++..++ .+++++|+++|++++.+|..|.||||+|+..|+.++++.|++
T Consensus 182 ~~v~~LL~~~gad~n~~d~-~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~ 260 (337)
T 4g8k_A 182 EVLKILLDEMGADVNACDN-MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 260 (337)
T ss_dssp HHHHHHHHHSCCCTTCCCT-TSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHhccCCCcCccCC-CCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHH
Confidence 9999999877799998764 56699998876543 458899999999999999999999999999999999999998
Q ss_pred C-CCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc
Q psy817 333 K-GSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSK 408 (854)
Q Consensus 333 ~-g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~ 408 (854)
. |+++|.+|.+|+||||+|+..| +.+++++|+++|+|+|.+ +|||+|+.+|+.++|++|+++||+++..
T Consensus 261 ~~~~~vn~~d~~G~TpL~~A~~~g--~~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 261 QEHIEINDTDSDGKTALLLAVELK--LKKIAELLCKRGASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKEDFH 330 (337)
T ss_dssp STTCCTTCBCTTSCBHHHHHHHTT--CHHHHHHHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC---
T ss_pred hcCCcccCcCCCCCCHHHHHHHcC--CHHHHHHHHHCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCCCCC
Confidence 5 8999999999999999999999 889999999999999765 5999999999999999999999999864
No 4
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=3.4e-42 Score=373.72 Aligned_cols=286 Identities=26% Similarity=0.297 Sum_probs=259.6
Q ss_pred CCccHHHHHHHcCCHHHHHHHHhCCCCccccC--CCccHHHHHHhCCCHHHHHHHHhCCCCC------CchHHHHHHHcC
Q psy817 150 DKYGALHLAAFNGSIKGCSWLMLHGHDINFTK--DSYTPLHFAVLGNYVDCAKFLIKNKAHI------HETIVHSAVSTN 221 (854)
Q Consensus 150 ~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~--~g~t~L~~A~~~~~~~iv~~Ll~~~~~~------~~t~L~~A~~~~ 221 (854)
+|.||||.|+++|++++|++|+++|+|+|..+ .|.||||+|+..|+.+++++|+++|+++ +.++++.++..+
T Consensus 24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~ 103 (337)
T 4g8k_A 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAG 103 (337)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcc
Confidence 68899999999999999999999999999765 3899999999999999999999999987 689999999999
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccccc---------CCcCcHHHHHHHcCCHH
Q psy817 222 AVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTK---------ERRVTALHLAAENGYVE 292 (854)
Q Consensus 222 ~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~---------~~~~t~L~~A~~~g~~~ 292 (854)
..+++..+++.+++++..|..|.||||+|+..|+.+++++|++++ ++++.... ..|.||||+|+..|+.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~g-a~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~ 182 (337)
T 4g8k_A 104 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG-ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE 182 (337)
T ss_dssp CHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCCCC-----CTTCSCCHHHHHHHHTCHH
T ss_pred cchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcC-CCcchhhccccccccccCCCCcHHHHHHHCCCHH
Confidence 999999999999999999999999999999999999999999987 77765432 35789999999999999
Q ss_pred HHHHHHh-cCCCcCCCCCCCCCHHHHHHhcCC----HHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHh
Q psy817 293 CLRILLE-NHANCNERNHKEQIPLHLAAKCQS----VECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLK 367 (854)
Q Consensus 293 ~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~ 367 (854)
+|++|++ .|++++.+|..|.|+++.++..++ .+++++|+++|+++|.+|..|+||||.|+..+ ..++++.|++
T Consensus 183 ~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~--~~~~v~~Ll~ 260 (337)
T 4g8k_A 183 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK--HLGLVQRLLE 260 (337)
T ss_dssp HHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTT--CHHHHHHHHT
T ss_pred HHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhh--hhHHHHHHHH
Confidence 9999996 599999999999999998875543 46889999999999999999999999999999 8888999998
Q ss_pred C-CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHhcCCcchHHhhhhcCCcccccCC
Q psy817 368 W-GANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSSISLQDP 443 (854)
Q Consensus 368 ~-g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~ 443 (854)
. |+++|.+|..|+||||+|+..|+.++|++|+++|+|++.+ +||+.|+++++.++++++...++.++...+
T Consensus 261 ~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d~~~p 332 (337)
T 4g8k_A 261 QEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKEDFHPP 332 (337)
T ss_dssp STTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC-----
T ss_pred hcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCCCCCCC
Confidence 5 8999999999999999999999999999999999998764 599999999999999999888877665444
No 5
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.6e-41 Score=358.91 Aligned_cols=261 Identities=26% Similarity=0.319 Sum_probs=214.7
Q ss_pred cCCcHHHHHHHcCCHHHHHHHHHcCCCCCC----CCccHHHHHHHcCCHHHHHHHHhCCCCccccC-CCccHHHHHHhCC
Q psy817 120 EKTTALLWCVFVKREDLLDALHQLGADLSN----DKYGALHLAAFNGSIKGCSWLMLHGHDINFTK-DSYTPLHFAVLGN 194 (854)
Q Consensus 120 ~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~----~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~-~g~t~L~~A~~~~ 194 (854)
+|.|+|+.|+..|+.+++++|+++|++++. .|.||||+|+..|+.+++++|+++|++++..+ +|.||||+|+..
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~- 82 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA- 82 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc-
Confidence 466777777777777777777777776643 56777777777777777777777777766543 355555555554
Q ss_pred CHHHHHHHHhCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccc
Q psy817 195 YVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKT 274 (854)
Q Consensus 195 ~~~iv~~Ll~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~ 274 (854)
|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++++ ++++...
T Consensus 83 --------------------------~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~ 135 (285)
T 1wdy_A 83 --------------------------GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG-ANVNLRR 135 (285)
T ss_dssp --------------------------TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCC
T ss_pred --------------------------CCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhC-CCccccc
Confidence 5555556666666677788888888888888888888888888876 6666552
Q ss_pred ---------cCCcCcHHHHHHHcCCHHHHHHHHhc-CCCcCCCCCCCCCHHHHHHhcCC----HHHHHHHHhCCCCCCCc
Q psy817 275 ---------KERRVTALHLAAENGYVECLRILLEN-HANCNERNHKEQIPLHLAAKCQS----VECMEMLLRKGSQVNAS 340 (854)
Q Consensus 275 ---------~~~~~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~----~~~v~~Ll~~g~~~~~~ 340 (854)
+..|.||||.|+..|+.+++++|+++ |++++..+..|.||||.|+..++ .+++++|+++|++++..
T Consensus 136 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~ 215 (285)
T 1wdy_A 136 KTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR 215 (285)
T ss_dssp CCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCC
T ss_pred ccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCc
Confidence 34577999999999999999999987 99999999999999999999999 89999999999999999
Q ss_pred cCCCCcHHHHHHhcCCCChHHHHHHHh-CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC
Q psy817 341 DCDNRTPLHASLSKNILSVHPLEILLK-WGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTP 410 (854)
Q Consensus 341 ~~~g~t~L~~a~~~~~~~~~~v~~Ll~-~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~ 410 (854)
|..|.||||.|+..+ +.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|.
T Consensus 216 ~~~g~t~L~~A~~~~--~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d~ 284 (285)
T 1wdy_A 216 GERGKTPLILAVEKK--HLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284 (285)
T ss_dssp CTTSCCHHHHHHHTT--CHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred CCCCCcHHHHHHHcC--CHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccc
Confidence 999999999999999 7888999999 8999999999999999999999999999999999999998773
No 6
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=2.9e-41 Score=368.55 Aligned_cols=288 Identities=28% Similarity=0.318 Sum_probs=265.2
Q ss_pred ccccCCcHHHHHHHcCCHHHHHHHHHc-CCCCCC---CCccHHHHHHHcCCHHHHHHHHhCCCCccccC-CCccHHHHHH
Q psy817 117 SQAEKTTALLWCVFVKREDLLDALHQL-GADLSN---DKYGALHLAAFNGSIKGCSWLMLHGHDINFTK-DSYTPLHFAV 191 (854)
Q Consensus 117 ~~~~~~t~L~~Aa~~g~~~iv~~Ll~~-g~~~~~---~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~-~g~t~L~~A~ 191 (854)
.+..+.++|+.||..|+.+.++.|+.. |.+++. .|.||||+|+..|+.+++++|+++|++++..+ +|.||||+|+
T Consensus 20 ~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 99 (351)
T 3utm_A 20 TGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNAC 99 (351)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred eccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHH
Confidence 345678999999999999999888865 777654 89999999999999999999999999999776 5999999999
Q ss_pred hCCCHHHHHHHHhCCCCC------CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q psy817 192 LGNYVDCAKFLIKNKAHI------HETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDS 265 (854)
Q Consensus 192 ~~~~~~iv~~Ll~~~~~~------~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~ 265 (854)
..|+.+++++|+++|+++ |.||||.|+..|+.+++++|+++|++++..+..|.||++.|+..+..+.+++....
T Consensus 100 ~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~ 179 (351)
T 3utm_A 100 SYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKG 179 (351)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcc
Confidence 999999999999999877 68999999999999999999999999999999999999999998888888876642
Q ss_pred CCCCccccccCCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhc---CCHHHHHHHHhCCCCCCCccC
Q psy817 266 GMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKC---QSVECMEMLLRKGSQVNASDC 342 (854)
Q Consensus 266 ~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~ 342 (854)
+++..++..++.+.++.++..+......+..|.||||+|+.. +..+++++|+++|++++..|.
T Consensus 180 --------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~ 245 (351)
T 3utm_A 180 --------------HSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNK 245 (351)
T ss_dssp --------------HHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCT
T ss_pred --------------cHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCC
Confidence 678889999999999999988777777888999999999999 558999999999999999999
Q ss_pred CCCcHHHHHHhcCCCChHHHHHHHhCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Q psy817 343 DNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIM 420 (854)
Q Consensus 343 ~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~ 420 (854)
.|.||||.|+..| +.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|.
T Consensus 246 ~g~t~L~~A~~~g--~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a~ 321 (351)
T 3utm_A 246 DFMTPLHVAAERA--HNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN 321 (351)
T ss_dssp TCCCHHHHHHHTT--CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHSC
T ss_pred CCCCHHHHHHHcC--CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhhh
Confidence 9999999999999 788999999999999999999999999999999999999999999999999999999999983
No 7
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.3e-40 Score=351.78 Aligned_cols=265 Identities=26% Similarity=0.308 Sum_probs=188.4
Q ss_pred CCChHHHHHHHcCCCChhHHHHHhhhc-----c-cccCCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCccHHHHHHH
Q psy817 90 SGDVNVLYAIENSLYEPDEMATLFSKA-----S-QAEKTTALLWCVFVKREDLLDALHQLGADLSN---DKYGALHLAAF 160 (854)
Q Consensus 90 ~g~~~l~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~---~g~t~L~~A~~ 160 (854)
.|.+.+..++..|+. +.+..++... . +..|.||||+|+..|+.+++++|+++|++++. +|.||||+|+.
T Consensus 4 ~g~~~L~~A~~~g~~--~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 81 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDV--DLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAI 81 (285)
T ss_dssp HHHHHHHHHHHTTCH--HHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred ccchHHHHHHHcCCH--HHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence 467889999999986 4455555422 2 56688999999999999999999999999864 89999999999
Q ss_pred cCCHHHHHHHHhCCCCccccC-CCccHHHHHHhCCCHHHHHHHHhCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCC
Q psy817 161 NGSIKGCSWLMLHGHDINFTK-DSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVL 239 (854)
Q Consensus 161 ~g~~~iv~~Ll~~g~~~~~~~-~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~ 239 (854)
.|+.+++++|+++|++++..+ .|.||||+|+..|+.+++++|+++|+++.... ...+ +.+..
T Consensus 82 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-------~~~~----------~~~~~ 144 (285)
T 1wdy_A 82 AGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRR-------KTKE----------DQERL 144 (285)
T ss_dssp HTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC-------CCCH----------HHHHT
T ss_pred cCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCccccc-------ccHH----------HHHhh
Confidence 999999999999999998765 58899999988888888888887776541000 0000 00011
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcCC----HHHHHHHHhcCCCcCCCCCCCCCHH
Q psy817 240 NNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGY----VECLRILLENHANCNERNHKEQIPL 315 (854)
Q Consensus 240 d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~----~~~v~~Ll~~~~~~~~~~~~g~t~L 315 (854)
+..|.||||.|+..|+.+++++|+++.+++++..+ ..|.||||+|+..|+ .+++++|+++|++++.++..|.|||
T Consensus 145 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L 223 (285)
T 1wdy_A 145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACD-NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 223 (285)
T ss_dssp TCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCC-TTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred ccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccC-CCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence 45566666666666666666666665446666554 334566666666666 6666666666666666666666666
Q ss_pred HHHHhcCCHHHHHHHHh-CCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCCCCCccCC
Q psy817 316 HLAAKCQSVECMEMLLR-KGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARD 376 (854)
Q Consensus 316 ~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d 376 (854)
|+|+..|+.+++++|++ .|++++..|..|.||||.|+..+ +.+++++|+++|++++.+|
T Consensus 224 ~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~--~~~i~~~Ll~~Ga~~~~~d 283 (285)
T 1wdy_A 224 ILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK--LKKIAELLCKRGASTDCGD 283 (285)
T ss_dssp HHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTT--CHHHHHHHHHHSSCSCCSS
T ss_pred HHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcC--cHHHHHHHHHcCCCCCccc
Confidence 66666666666666666 56666666666666666666666 5566666666666666655
No 8
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.1e-38 Score=348.08 Aligned_cols=326 Identities=24% Similarity=0.280 Sum_probs=264.1
Q ss_pred hccccchhhchhhhHHHHHHHHHhcCCChHHHHHHHcC-CCChhHHHHHhhhcccccCCcHHHHHHHcCCHHHHHHHHHc
Q psy817 65 ISDELSYKVCKESIRASLLEAMKMSSGDVNVLYAIENS-LYEPDEMATLFSKASQAEKTTALLWCVFVKREDLLDALHQL 143 (854)
Q Consensus 65 ~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~ 143 (854)
..+.......+.....+|+.+++ .|+...+..+... ..+ .+..+..|.||||+|+..|+.+++++|+++
T Consensus 11 ~~~~~~~~~~~~~~~~~L~~A~~--~g~~~~v~~ll~~~~~~--------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ 80 (351)
T 3utm_A 11 ADPSAKAVLTGEYKKDELLEAAR--SGNEEKLMALLTPLNVN--------CHASDGRKSTPLHLAAGYNRVRIVQLLLQH 80 (351)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHH--HTCHHHHHHHCCTTTTT--------CCCSSTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred cCCceeeeeeccccchhHHHHHH--cCCHHHHHHHHHhcCCC--------cccCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 33444445555666667776663 4555544443321 221 134677899999999999999999999999
Q ss_pred CCCCCC---CCccHHHHHHHcCCHHHHHHHHhCCCCccccC-CCccHHHHHHhCCCHHHHHHHHhCCCCC------CchH
Q psy817 144 GADLSN---DKYGALHLAAFNGSIKGCSWLMLHGHDINFTK-DSYTPLHFAVLGNYVDCAKFLIKNKAHI------HETI 213 (854)
Q Consensus 144 g~~~~~---~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~-~g~t~L~~A~~~~~~~iv~~Ll~~~~~~------~~t~ 213 (854)
|++++. +|.||||+|+..|+.+++++|+++|++++..+ .|.||||+|+..|+.+++++|+++|+++ |.++
T Consensus 81 g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~ 160 (351)
T 3utm_A 81 GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSA 160 (351)
T ss_dssp TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred CCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcc
Confidence 999865 89999999999999999999999999999766 5999999999999999999999999887 7899
Q ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHc---CC
Q psy817 214 VHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAEN---GY 290 (854)
Q Consensus 214 L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~---g~ 290 (854)
++.|+..+..+.+++... .+++..++..++.+.++.++.... .+......|.||||+|+.. ++
T Consensus 161 l~~a~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~t~L~~A~~~~~~~~ 226 (351)
T 3utm_A 161 VDMAPTPELRERLTYEFK------------GHSLLQAAREADLAKVKKTLALEI--INFKQPQSHETALHCAVASLHPKR 226 (351)
T ss_dssp HHHCSSHHHHHHHHHHHH------------HHHHHHHHHTTCHHHHHHHTTTCC--TTCCCTTTCCCHHHHHHHCCSTTH
T ss_pred hHHHhhhhhHHHHHhhhc------------ccHHHHHHHhccHHHHHHHHHhhc--ccccCCCCCCCHHHHHHHHhCccH
Confidence 999999999988888764 357889999999999999998763 3333456678999999999 55
Q ss_pred HHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCCC
Q psy817 291 VECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGA 370 (854)
Q Consensus 291 ~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~ 370 (854)
.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..+ +.+++++|+++|+
T Consensus 227 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~--~~~~v~~Ll~~ga 304 (351)
T 3utm_A 227 KQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAG--HLQTCRLLLSYGS 304 (351)
T ss_dssp HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT--CHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC--cHHHHHHHHHcCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999 8899999999999
Q ss_pred CCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHhcC
Q psy817 371 NVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNT 423 (854)
Q Consensus 371 d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~ 423 (854)
+++.+|..|.||+++| +.+++++|.+.+.. ....+.+++..|++++
T Consensus 305 d~~~~~~~g~tal~~a----~~~~~~~l~~~~~~---~~~~~~~~l~~A~~~g 350 (351)
T 3utm_A 305 DPSIISLQGFTAAQMG----NEAVQQILSESTPM---RTSDVDYRLLEASKAG 350 (351)
T ss_dssp CTTCCCTTSCCHHHHS----CHHHHHHHHHC----------------------
T ss_pred CCCCcCCCCCChhhhh----hHHHHHHHHhcccc---ccCcceeehhhhhccC
Confidence 9999999999999998 67899999987654 2345667887777654
No 9
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-39 Score=358.38 Aligned_cols=275 Identities=20% Similarity=0.197 Sum_probs=155.4
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCccccC--CCccHHHHHHhCCCHHHH
Q psy817 122 TTALLWCVFVKREDLLDALHQLGADLSNDKYGALHLAAFNGSIKGCSWLMLHGHDINFTK--DSYTPLHFAVLGNYVDCA 199 (854)
Q Consensus 122 ~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~--~g~t~L~~A~~~~~~~iv 199 (854)
.+++.-+...|+.+++++++.... +..|.||||.|+..|+ +++++|++. ++|..+ .|.||||+|+..|+.+++
T Consensus 67 ~~~~~~~~~~g~~~~~~~~~~~~~--~~~g~t~L~~Aa~~~~-~~~~~L~~~--~~n~~d~~~g~t~Lh~Aa~~g~~~~v 141 (373)
T 2fo1_E 67 QGYGNGNDFLGDFNHTNLQIPTEP--EPESPIKLHTEAAGSY-AITEPITRE--SVNIIDPRHNRTVLHWIASNSSAEKS 141 (373)
T ss_dssp -----------------------------CCCHHHHHHHSSS-CCCSCCSTT--TTTTCCCSSCCCHHHHHHCTTCCSCC
T ss_pred cccCCCCCccccccccccccccCC--CCCCccHHHHHhcCCc-hHHHHhccc--cccccCCcCCCCHHHHHHHCCCHHHH
Confidence 345666788889999888876543 4578999999998554 788888654 454444 589999999999998888
Q ss_pred HHHH--------hCCCCC------CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q psy817 200 KFLI--------KNKAHI------HETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDS 265 (854)
Q Consensus 200 ~~Ll--------~~~~~~------~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~ 265 (854)
++|+ ++|+++ |.||||+|+..|+.++|++|+++|++++..|..|.||||+|+..|+.+++++|+++
T Consensus 142 ~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 221 (373)
T 2fo1_E 142 EDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNS 221 (373)
T ss_dssp TTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhc
Confidence 8776 444443 45566666666666666666666666666666666666666666666666666654
Q ss_pred CC--CCccccccCCcCcHHHHHHHcC---CHHHHHHHHhcCCCcCC--------CCCCCCCHHHHHHhcCCHHHHHHHHh
Q psy817 266 GM--ADVDIKTKERRVTALHLAAENG---YVECLRILLENHANCNE--------RNHKEQIPLHLAAKCQSVECMEMLLR 332 (854)
Q Consensus 266 ~~--~~~~~~~~~~~~t~L~~A~~~g---~~~~v~~Ll~~~~~~~~--------~~~~g~t~L~~A~~~~~~~~v~~Ll~ 332 (854)
+. ++++..+ ..|.||||+|+..| +.+++++|+++|++++. .|..|.||||+|+..|+.+++++|++
T Consensus 222 ~~~~~~~~~~d-~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~ 300 (373)
T 2fo1_E 222 TKLKGDIEELD-RNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVG 300 (373)
T ss_dssp HHHHHTTSCCC-TTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHH
T ss_pred CccccChhhcC-CCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHH
Confidence 31 3444333 33446666666655 56666666666665543 34456666666666666666666665
Q ss_pred CC-CCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q psy817 333 KG-SQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGAD 404 (854)
Q Consensus 333 ~g-~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 404 (854)
++ ++++..|..|.||||+|+..| +.+++++|+++|++++.+|..|.||||+|+.+|+.+++++|+++|++
T Consensus 301 ~~~~~~n~~d~~g~TpL~~A~~~g--~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 301 EKGSNKDKQDEDGKTPIMLAAQEG--RIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371 (373)
T ss_dssp HSCCCTTCCCTTCCCHHHHHHHHT--CHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred hcCCCccCcCCCCCCHHHHHHHcC--CHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 53 566666666666666666666 55556666666666666666666666666666666666666666554
No 10
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.4e-38 Score=335.90 Aligned_cols=256 Identities=25% Similarity=0.390 Sum_probs=187.7
Q ss_pred ccccCCcHHHHHHHcCCHHHHHHHHHcCCC--------------CCCCCccHHHHHHHcCCHHHHHHHHhCCCCccccC-
Q psy817 117 SQAEKTTALLWCVFVKREDLLDALHQLGAD--------------LSNDKYGALHLAAFNGSIKGCSWLMLHGHDINFTK- 181 (854)
Q Consensus 117 ~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~--------------~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~- 181 (854)
....|.|+||+|+..|+.+.+..++..+.+ .+.+|+||||+|+..|+.+++++|+++|++++..+
T Consensus 11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~ 90 (285)
T 3d9h_A 11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITA 90 (285)
T ss_dssp -------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECT
T ss_pred cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence 345688899999998886666655443321 13378888888888888888888888888887655
Q ss_pred CCccHHHHHHhCCCHHHHHHHHhCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Q psy817 182 DSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKA 261 (854)
Q Consensus 182 ~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~ 261 (854)
+|.||||+|+..|+ .+++++|+++|++++..|..|.||||+|+..|+.+++++
T Consensus 91 ~g~t~L~~A~~~g~---------------------------~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~ 143 (285)
T 3d9h_A 91 DHVSPLHEACLGGH---------------------------LSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNL 143 (285)
T ss_dssp TCCCHHHHHHHTTC---------------------------HHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred CCCCHHHHHHHCCc---------------------------HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHH
Confidence 46666666666554 555555555667788889999999999999999999999
Q ss_pred HHHcCCCCccccccCCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCcc
Q psy817 262 ILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASD 341 (854)
Q Consensus 262 Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 341 (854)
|++++ ++++... .|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++. +
T Consensus 144 Ll~~g-~~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~ 219 (285)
T 3d9h_A 144 LLQHG-ASVQPES--DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-G 219 (285)
T ss_dssp HHHTT-CCSSCSC--TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-C
T ss_pred HHHCC-CCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-C
Confidence 99986 6666543 477999999999999999999999999999999999999999999999999999999999985 8
Q ss_pred CCCCcHHHHHHhcCCCChHHHHHHHhCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccc
Q psy817 342 CDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMH-GADISS 407 (854)
Q Consensus 342 ~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~ 407 (854)
..|.||||.|+..+ +.+++++|+++|++++.+|..|.||||+|+ ++.+++++|+++ |+++..
T Consensus 220 ~~g~t~L~~A~~~~--~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~~ 282 (285)
T 3d9h_A 220 KGQDSPLHAVVRTA--SEELACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQLFLEREGASLPK 282 (285)
T ss_dssp BTTBCHHHHHHHTT--CHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHHHHHC------
T ss_pred CCCCCHHHHHHHcC--CHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCCC
Confidence 88999999999999 788899999999999999999999999998 456899999998 777654
No 11
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2.4e-39 Score=355.76 Aligned_cols=304 Identities=19% Similarity=0.222 Sum_probs=228.3
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCccccCCCccHHHHHHhCCCHHHHHH
Q psy817 122 TTALLWCVFVKREDLLDALHQLGADLSNDKYGALHLAAFNGSIKGCSWLMLHGHDINFTKDSYTPLHFAVLGNYVDCAKF 201 (854)
Q Consensus 122 ~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~iv~~ 201 (854)
..+|+.|+..|+.+.++.++++....+ ...+++.-+...|+.+++++++.... ...|.||||.|+.+++ +++++
T Consensus 38 ~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~g~t~L~~Aa~~~~-~~~~~ 111 (373)
T 2fo1_E 38 QHSLLEASYDGYIKRQRNELQHYSLYP-NPQGYGNGNDFLGDFNHTNLQIPTEP----EPESPIKLHTEAAGSY-AITEP 111 (373)
T ss_dssp -------------------------------------------------------------CCCHHHHHHHSSS-CCCSC
T ss_pred ccccccccCCccccchhhhhhhhcccc-CccccCCCCCccccccccccccccCC----CCCCccHHHHHhcCCc-hHHHH
Confidence 356777778899999998888776654 23456788889999999999977644 2358999999999665 78888
Q ss_pred HHhCCCC-----CCchHHHHHHHcCCHHHHHHHH--------HCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q psy817 202 LIKNKAH-----IHETIVHSAVSTNAVDCVQLLL--------SLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMA 268 (854)
Q Consensus 202 Ll~~~~~-----~~~t~L~~A~~~~~~~~v~~Ll--------~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~ 268 (854)
|++...+ .|.||||+|+..|+.+++++|+ ++|+++|..|..|.||||+|+..|+.+++++|++++ +
T Consensus 112 L~~~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g-a 190 (373)
T 2fo1_E 112 ITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAG-A 190 (373)
T ss_dssp CSTTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-C
T ss_pred hccccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCC-C
Confidence 8765432 3889999999999998888776 889999999999999999999999999999999986 8
Q ss_pred CccccccCCcCcHHHHHHHcCCHHHHHHHHhcC---CCcCCCCCCCCCHHHHHHhcC---CHHHHHHHHhCCCCCCC---
Q psy817 269 DVDIKTKERRVTALHLAAENGYVECLRILLENH---ANCNERNHKEQIPLHLAAKCQ---SVECMEMLLRKGSQVNA--- 339 (854)
Q Consensus 269 ~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~---~~~~~~~~~g~t~L~~A~~~~---~~~~v~~Ll~~g~~~~~--- 339 (854)
+++..+ ..|.||||+|+..|+.+++++|++++ ++++..|..|.||||+|+..+ +.+++++|+++|++++.
T Consensus 191 ~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~ 269 (373)
T 2fo1_E 191 DPTIYN-KSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA 269 (373)
T ss_dssp CSCCCC-TTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSG
T ss_pred CCcccC-CCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccc
Confidence 898776 46779999999999999999999998 799999999999999999998 89999999999999886
Q ss_pred -----ccCCCCcHHHHHHhcCCCChHHHHHHHhCC-CCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCC
Q psy817 340 -----SDCDNRTPLHASLSKNILSVHPLEILLKWG-ANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGS 413 (854)
Q Consensus 340 -----~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g-~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~ 413 (854)
.|..|.||||.|+..| +.+++++|+++| +++|.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.
T Consensus 270 ~~~~~~d~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~ 347 (373)
T 2fo1_E 270 ARKDSEKYKGRTALHYAAQVS--NMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDH 347 (373)
T ss_dssp GGTSSSSCCCCCTHHHHHSSC--CHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSC
T ss_pred cccCcccccCCCHHHHHHHhC--CHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCC
Confidence 5678999999999999 889999999876 99999999999999999999999999999999999999999999
Q ss_pred CHHHHHHhcCCcchHHhhhhcC
Q psy817 414 SALSIIMRNTPSSISSVRKKLD 435 (854)
Q Consensus 414 t~l~~a~~~~~~~~~~~~~~~~ 435 (854)
|||++|+.+++.+++.++....
T Consensus 348 t~l~~A~~~g~~~iv~~Ll~~~ 369 (373)
T 2fo1_E 348 TARQLAQANNHHNIVDIFDRCR 369 (373)
T ss_dssp CHHHHHHHTTCHHHHHHHHTTC
T ss_pred CHHHHHHHcCCHHHHHHHHhcC
Confidence 9999999999999988876654
No 12
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=4.9e-38 Score=327.54 Aligned_cols=248 Identities=22% Similarity=0.299 Sum_probs=154.0
Q ss_pred cCCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCccHHHHHHHcCCHHHHHHHHhCCCCccccC-CCccHHHHHHhCCC
Q psy817 120 EKTTALLWCVFVKREDLLDALHQLGADLSN---DKYGALHLAAFNGSIKGCSWLMLHGHDINFTK-DSYTPLHFAVLGNY 195 (854)
Q Consensus 120 ~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~---~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~-~g~t~L~~A~~~~~ 195 (854)
+|.||||+|+..|+.+++++|+++|+++|. +|.||||+|+..|+.+++++|+++|++++..+ +|.||||+|+..|+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGS 81 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCC
Confidence 478888888888888888888888888764 78888888888888888888888888888655 47788888887777
Q ss_pred HHHHHHHHhCCCCC-----CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc
Q psy817 196 VDCAKFLIKNKAHI-----HETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADV 270 (854)
Q Consensus 196 ~~iv~~Ll~~~~~~-----~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~ 270 (854)
.+++++|+++|++. |.||||.|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++++ +++
T Consensus 82 ~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~ 160 (261)
T 2xai_A 82 WDCVNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG-ADV 160 (261)
T ss_dssp HHHHHHHHHTTCCSSCSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHT-CCT
T ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcC-CCC
Confidence 77777777776654 445555555555555555555555555555555555555555555555555555554 444
Q ss_pred cccccCCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHH
Q psy817 271 DIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHA 350 (854)
Q Consensus 271 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 350 (854)
+. +..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+.++ +++++|++++..... .
T Consensus 161 ~~--~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~~~~~l---------~- 226 (261)
T 2xai_A 161 NQ--GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLEREGPPSL---------M- 226 (261)
T ss_dssp TC--CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTC--THHHHHHHC-CCCCH---------H-
T ss_pred CC--CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhccccc--cHHHHHHhccCCccH---------H-
Confidence 42 233445555555555555555555555555555555555555555333 245555554332210 0
Q ss_pred HHhcCCCChHHHHHHHhCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHH
Q psy817 351 SLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLI 399 (854)
Q Consensus 351 a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll 399 (854)
..++++.+|..|.||+|.|.+...++.++-++
T Consensus 227 -----------------~~~~~~~r~~~g~t~l~~~~~~~~p~~l~~~l 258 (261)
T 2xai_A 227 -----------------QLCRLRIRKCFGIQQHHKITKLVLPEDLKQFL 258 (261)
T ss_dssp -----------------HHHHHHHHTTSCTTCGGGGGGSSSCHHHHHHH
T ss_pred -----------------HHHHHHHHHHhchhccccCcccCCcHHHHHHH
Confidence 00123356667777777777776666655544
No 13
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.4e-39 Score=357.17 Aligned_cols=286 Identities=21% Similarity=0.176 Sum_probs=200.9
Q ss_pred HhhhcccccCCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCccHHHHHHHcCCHHHHHHHHhCCCCccccCCCccHHH
Q psy817 112 LFSKASQAEKTTALLWCVFVKREDLLDALHQLGADLSN---DKYGALHLAAFNGSIKGCSWLMLHGHDINFTKDSYTPLH 188 (854)
Q Consensus 112 ~~~~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~---~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~g~t~L~ 188 (854)
+..+..|..|.||||+||..|+.++|++|+++|+++|. .|.||||+|+..|+.++|++|+++|++++. .+|.||||
T Consensus 11 ~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~g~t~L~ 89 (364)
T 3ljn_A 11 LNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL-WHGQKPIH 89 (364)
T ss_dssp -----CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC-BTTBCHHH
T ss_pred CCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc-cCCCCHHH
Confidence 33456678899999999999999999999999999865 899999999999999999999999997763 36899999
Q ss_pred HHHhCCCHHHHHHHHhCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHHcC
Q psy817 189 FAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRG--LISCLKAILDSG 266 (854)
Q Consensus 189 ~A~~~~~~~iv~~Ll~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g--~~~iv~~Ll~~~ 266 (854)
+|+..|+.+++++|++++++.|..+-.......... ....+++..|..|.||||+|+..| +.+++++|++++
T Consensus 90 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~g 163 (364)
T 3ljn_A 90 LAVMANKTDLVVALVEGAKERGQMPESLLNECDERE------VNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLG 163 (364)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCC------EEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHh------hhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcC
Confidence 999999999999999984332221111000000000 001223335556666666666666 666666666664
Q ss_pred CCCccccccCCcCcHHHHHHHcCCHHHHHHHHhcCCC-----cCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCcc
Q psy817 267 MADVDIKTKERRVTALHLAAENGYVECLRILLENHAN-----CNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASD 341 (854)
Q Consensus 267 ~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~-----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 341 (854)
++++.++ ..|.||||+|+..|+.+++++|+++|++ ++..|..|.||||+|+..|+.+++++|+++|++++..|
T Consensus 164 -a~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d 241 (364)
T 3ljn_A 164 -ASPTAKD-KADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMED 241 (364)
T ss_dssp -CCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCC
T ss_pred -CCCcccC-CCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence 6666554 3445677777766777777777766666 66666667777777777777777777777777777667
Q ss_pred CCCCcHHHHHHhcCCCChHHHHHHHhCCCCCcc------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc
Q psy817 342 CDNRTPLHASLSKNILSVHPLEILLKWGANVNA------------RDIFGYSPIHIAALSELSQCVDCLIMHGADISSK 408 (854)
Q Consensus 342 ~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~------------~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~ 408 (854)
..|.||||+|+..| +.+++++|+++|++++. .+..++||+++|+..|+.+.+..|+..+++....
T Consensus 242 ~~g~tpL~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ll~~~~~~~~~ 318 (364)
T 3ljn_A 242 NEHTVPLYLSVRAA--MVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVR 318 (364)
T ss_dssp TTSCCHHHHHHHTC--CHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHhC--hHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHHHHHHHHHHhh
Confidence 77777777777766 56667777766654422 4567889999999999888888888877665443
No 14
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=5.3e-38 Score=327.24 Aligned_cols=240 Identities=25% Similarity=0.392 Sum_probs=205.8
Q ss_pred CCccHHHHHHHcCCHHHHHHHHhCCCCccccC-CCccHHHHHHhCCCHHHHHHHHhCCCCCCchHHHHHHHcCCHHHHHH
Q psy817 150 DKYGALHLAAFNGSIKGCSWLMLHGHDINFTK-DSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQL 228 (854)
Q Consensus 150 ~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~-~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~t~L~~A~~~~~~~~v~~ 228 (854)
+|+||||+|+..|+.+++++|+++|++++..+ +|.||||+|+..|+ .+++++
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~---------------------------~~~v~~ 54 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGH---------------------------LSCVKI 54 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTC---------------------------HHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCC---------------------------HHHHHH
Confidence 58899999999999999999999999988765 46677666666554 555555
Q ss_pred HHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCC
Q psy817 229 LLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERN 308 (854)
Q Consensus 229 Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 308 (854)
|+++|++++..|..|.||||+|+..|+.+++++|++++ ++++.. ..|.||||+|+..|+.+++++|+++|++++..|
T Consensus 55 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 131 (261)
T 2xai_A 55 LLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHG-ASVQPE--SDLASPIHEAARRGHVECVNSLIAYGGNIDHKI 131 (261)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSSCS--CTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCB
T ss_pred HHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCC--CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCC
Confidence 56667778889999999999999999999999999987 777643 347799999999999999999999999999999
Q ss_pred CCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCCCCCccCCCCCCCHHHHHHH
Q psy817 309 HKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAAL 388 (854)
Q Consensus 309 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~ 388 (854)
..|.||||+|+..|+.+++++|+++|++++. +..|.||||.|+..+ +.+++++|+++|+|++.+|..|.||+|+|+.
T Consensus 132 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~~~--~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~ 208 (261)
T 2xai_A 132 SHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTA--SEELACLLMDFGADTQAKNAEGKRPVELVPP 208 (261)
T ss_dssp TTTBCHHHHHHHTTCHHHHHHHHHHTCCTTC-CBTTBCHHHHHHHHT--CHHHHHHHHHTTCCTTCCCTTSCCGGGGSCT
T ss_pred CCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHcC--CHHHHHHHHHcCCCCCCcCCCCCChhhhccc
Confidence 9999999999999999999999999999985 888999999999999 7888999999999999999999999999996
Q ss_pred cCCHHHHHHHHHcCCC--------ccccCCCCCCHHHHHHhcCC
Q psy817 389 SELSQCVDCLIMHGAD--------ISSKTPSGSSALSIIMRNTP 424 (854)
Q Consensus 389 ~~~~~~v~~Ll~~ga~--------~~~~~~~g~t~l~~a~~~~~ 424 (854)
++ +++++|++++.+ ++.++..|.|+++.+.+...
T Consensus 209 ~~--~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~~ 250 (261)
T 2xai_A 209 ES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVL 250 (261)
T ss_dssp TC--THHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGSSS
T ss_pred cc--cHHHHHHhccCCccHHHHHHHHHHHHhchhccccCcccCC
Confidence 55 589999998764 45789999999999887543
No 15
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.2e-37 Score=323.34 Aligned_cols=216 Identities=26% Similarity=0.343 Sum_probs=196.9
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcC
Q psy817 210 HETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENG 289 (854)
Q Consensus 210 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g 289 (854)
|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|++++ ++++.++ ..|.||||+|+..|
T Consensus 59 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~-~~g~t~L~~A~~~~ 136 (285)
T 3d9h_A 59 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG-AQVNGVT-ADWHTPLFNACVSG 136 (285)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTT-CCSSCCC-TTCCCHHHHHHHHT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCC-CCCCCCC-CCCCCHHHHHHHcC
Confidence 677777788888888888888889999999999999999999999999999999986 8888776 45679999999999
Q ss_pred CHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCC
Q psy817 290 YVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWG 369 (854)
Q Consensus 290 ~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g 369 (854)
+.+++++|+++|++++..+ .|.||||+|+..|+.+++++|+++|++++..|..|.||||.|+..+ +.+++++|+++|
T Consensus 137 ~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~--~~~~v~~Ll~~g 213 (285)
T 3d9h_A 137 SWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQ--QRACVKKLLESG 213 (285)
T ss_dssp CHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTT--CHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC--cHHHHHHHHHCC
Confidence 9999999999999987654 5999999999999999999999999999999999999999999999 889999999999
Q ss_pred CCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHhcCCcchHHhhhh
Q psy817 370 ANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKK 433 (854)
Q Consensus 370 ~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~ 433 (854)
++++. |..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+.+ .++..++..
T Consensus 214 a~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~--~~~~~~Ll~ 274 (285)
T 3d9h_A 214 ADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPE--SPLAQLFLE 274 (285)
T ss_dssp CCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTT--SHHHHHHHH
T ss_pred CCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhcCc--cHHHHHHHH
Confidence 99995 88999999999999999999999999999999999999999999843 344444433
No 16
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=7.1e-37 Score=317.20 Aligned_cols=190 Identities=25% Similarity=0.317 Sum_probs=146.8
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcC
Q psy817 210 HETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENG 289 (854)
Q Consensus 210 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g 289 (854)
|.||||.|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++++..+++..+ ..|.||||+|+..|
T Consensus 57 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~~ 135 (253)
T 1yyh_A 57 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM-HDGTTPLILAARLA 135 (253)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCC-TTCCCHHHHHHHHT
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccC-CCCCcHHHHHHHcC
Confidence 34444445555555566666666677777888888888888888888888888887755666654 34568888888888
Q ss_pred CHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCC
Q psy817 290 YVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWG 369 (854)
Q Consensus 290 ~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g 369 (854)
+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..|..|.||||.|+..+ +.+++++|+++|
T Consensus 136 ~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~--~~~~v~~Ll~~g 213 (253)
T 1yyh_A 136 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG--SYETAKVLLDHF 213 (253)
T ss_dssp CSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT--CHHHHHHHHHTT
T ss_pred hHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCC--CHHHHHHHHHcC
Confidence 888888888888888888888888888888888888888888888888888888888888888887 677788888888
Q ss_pred CCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q psy817 370 ANVNARDIFGYSPIHIAALSELSQCVDCLIMHG 402 (854)
Q Consensus 370 ~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g 402 (854)
++++.+|..|.||+++|+..|+.+++++|.+..
T Consensus 214 a~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~ 246 (253)
T 1yyh_A 214 ANRDITDHMDRLPRDIAQERMHHDIVRLLDLEH 246 (253)
T ss_dssp CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred CCccccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 888888888888888888888888888887654
No 17
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=4.6e-37 Score=324.31 Aligned_cols=238 Identities=24% Similarity=0.232 Sum_probs=152.5
Q ss_pred cccccCCcHHHHHHHcCCHHHHHHHHHcCCC---CC---CCCccHHHHHHHcCCHHHHHHHHhCCCCccccC-CCccHHH
Q psy817 116 ASQAEKTTALLWCVFVKREDLLDALHQLGAD---LS---NDKYGALHLAAFNGSIKGCSWLMLHGHDINFTK-DSYTPLH 188 (854)
Q Consensus 116 ~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~---~~---~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~-~g~t~L~ 188 (854)
..+..|.||||+|+..|+.++|++|+++|++ ++ ..|.||||+|+..|+.+++++|+++|++++..+ .|.||||
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~ 83 (282)
T 1oy3_D 4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALH 83 (282)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence 4678899999999999999999999999987 43 389999999999999999999999999999776 5999999
Q ss_pred HHHhCCCHHHHHHHHhCCCCC-------------------CchHHHHHHHcCCHH-HHHHHHHCCCCCCCCCCCCCcHHH
Q psy817 189 FAVLGNYVDCAKFLIKNKAHI-------------------HETIVHSAVSTNAVD-CVQLLLSLQINPNVLNNKGVSPLH 248 (854)
Q Consensus 189 ~A~~~~~~~iv~~Ll~~~~~~-------------------~~t~L~~A~~~~~~~-~v~~Ll~~g~~~~~~d~~g~t~L~ 248 (854)
+|+..|+.+++++|+++|++. +.++++.++..+... ....+...+++++..|..|.||||
T Consensus 84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~ 163 (282)
T 1oy3_D 84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH 163 (282)
T ss_dssp HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred HHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHH
Confidence 999999999999999998764 223333333332222 222222335555555666666666
Q ss_pred HHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHH
Q psy817 249 IAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECME 328 (854)
Q Consensus 249 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~ 328 (854)
+|+..|+.+++++|++++ ++++..+...|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++++
T Consensus 164 ~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~ 242 (282)
T 1oy3_D 164 VAVIHKDAEMVRLLRDAG-ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILAR 242 (282)
T ss_dssp HHHHTTCHHHHHHHHHHT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHH
T ss_pred HHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHH
Confidence 666666666666666554 5555554444556666666666666666666666666666666666666666666666666
Q ss_pred HHHhCCCCCCCccCCCCcHHHHHHhc
Q psy817 329 MLLRKGSQVNASDCDNRTPLHASLSK 354 (854)
Q Consensus 329 ~Ll~~g~~~~~~~~~g~t~L~~a~~~ 354 (854)
+|+++|++++..+..|.||++.|...
T Consensus 243 ~Ll~~ga~~~~~~~~g~tpl~~a~~~ 268 (282)
T 1oy3_D 243 LLRAHGAPEPEDGGDKLSPCSSSGSD 268 (282)
T ss_dssp HHHHTTCCCCCCC-------------
T ss_pred HHHHcCCCcCcCCCcccccccccCCc
Confidence 66666666666666666666655544
No 18
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=5.7e-37 Score=336.39 Aligned_cols=246 Identities=18% Similarity=0.210 Sum_probs=204.5
Q ss_pred CCCCccHHHHHHHcCCHHHHHHHHhCCCCccccC-CCccHHHHHHhCCCHHHHHHHHhCCCCCCchHHHHHHHcCCHHHH
Q psy817 148 SNDKYGALHLAAFNGSIKGCSWLMLHGHDINFTK-DSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCV 226 (854)
Q Consensus 148 ~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~-~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~t~L~~A~~~~~~~~v 226 (854)
|.+|.||||+||..|+.++|++|+++|++++..+ +|.||||+|+..|+.+++++|+++|++.
T Consensus 17 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~----------------- 79 (364)
T 3ljn_A 17 DDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH----------------- 79 (364)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC-----------------
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc-----------------
Confidence 3378999999999999999999999999998766 5888888888888777777777776643
Q ss_pred HHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcC---CCCccc-----------------cccCCcCcHHHHHH
Q psy817 227 QLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSG---MADVDI-----------------KTKERRVTALHLAA 286 (854)
Q Consensus 227 ~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~---~~~~~~-----------------~~~~~~~t~L~~A~ 286 (854)
+ +.+|.||||+|+..|+.+++++|++++ +.+++. .+ ..|.||||+|+
T Consensus 80 ----------~--~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~t~L~~A~ 146 (364)
T 3ljn_A 80 ----------S--LWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKH-CKGQTALHWCV 146 (364)
T ss_dssp ----------C--CBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEE-ESCCCHHHHHH
T ss_pred ----------c--ccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCC-CCCCCHHHHHH
Confidence 1 224556666666666666666666551 133332 33 45779999999
Q ss_pred HcC--CHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCC-----CCCccCCCCcHHHHHHhcCCCCh
Q psy817 287 ENG--YVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQ-----VNASDCDNRTPLHASLSKNILSV 359 (854)
Q Consensus 287 ~~g--~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~g~t~L~~a~~~~~~~~ 359 (854)
..| +.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++ ++..|..|+||||+|+..| +.
T Consensus 147 ~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g--~~ 224 (364)
T 3ljn_A 147 GLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILIN--WE 224 (364)
T ss_dssp HSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTT--CH
T ss_pred HcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcC--CH
Confidence 999 99999999999999999999999999999999999999999999998 9999999999999999999 88
Q ss_pred HHHHHHHhCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc------------cCCCCCCHHHHHHhcCCc
Q psy817 360 HPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISS------------KTPSGSSALSIIMRNTPS 425 (854)
Q Consensus 360 ~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~------------~~~~g~t~l~~a~~~~~~ 425 (854)
+++++|+++|+|+|.+|..|.||||+|+..|+.+++++|+++|++++. .+..+.+|+..|+..+..
T Consensus 225 ~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~ 302 (364)
T 3ljn_A 225 DVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSK 302 (364)
T ss_dssp HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCH
Confidence 999999999999999999999999999999999999999999987643 345667777776665533
No 19
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=2.9e-36 Score=312.65 Aligned_cols=217 Identities=25% Similarity=0.314 Sum_probs=122.3
Q ss_pred hcccccCCcHHHHHHHcC-------------CHHHHHHHHHcCCCCC----CCCccHHHHHHHcCCHHHHHHHHhCCCCc
Q psy817 115 KASQAEKTTALLWCVFVK-------------REDLLDALHQLGADLS----NDKYGALHLAAFNGSIKGCSWLMLHGHDI 177 (854)
Q Consensus 115 ~~~~~~~~t~L~~Aa~~g-------------~~~iv~~Ll~~g~~~~----~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~ 177 (854)
+.+|.+|.||||+|+..| +.+++++|+++|++++ ..|.||||+|+..|+.+++++|+++|+++
T Consensus 4 n~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~ 83 (253)
T 1yyh_A 4 NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA 83 (253)
T ss_dssp ------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred CCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 356778999999999987 7888888888888763 37888888888888888888888888888
Q ss_pred cccC-CCccHHHHHHhCCCHHHHHHHHhCCC-CC------CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Q psy817 178 NFTK-DSYTPLHFAVLGNYVDCAKFLIKNKA-HI------HETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHI 249 (854)
Q Consensus 178 ~~~~-~g~t~L~~A~~~~~~~iv~~Ll~~~~-~~------~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~ 249 (854)
+..+ .|.||||+|+..|+.+++++|+++|+ ++ |.||||.|+..|+.+++++|+++|++++..|..|.||||+
T Consensus 84 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~ 163 (253)
T 1yyh_A 84 NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHW 163 (253)
T ss_dssp TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHH
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence 7665 47888888888887777777777765 22 5566666666666666666666666666666666666666
Q ss_pred HHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHH
Q psy817 250 AADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEM 329 (854)
Q Consensus 250 A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 329 (854)
|+..|+.+++++|+++| ++++.++ ..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+.+|+.+++++
T Consensus 164 A~~~~~~~~v~~Ll~~g-a~~~~~~-~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~ 241 (253)
T 1yyh_A 164 AAAVNNVDAAVVLLKNG-ANKDMQN-NREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRL 241 (253)
T ss_dssp HHHHTCHHHHHHHHHTT-CCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHcC-CCCCCcC-CCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHH
Confidence 66666666666666654 5555543 334466666666666666666666666666666666666666666666666666
Q ss_pred HHhC
Q psy817 330 LLRK 333 (854)
Q Consensus 330 Ll~~ 333 (854)
|.+.
T Consensus 242 l~~~ 245 (253)
T 1yyh_A 242 LDLE 245 (253)
T ss_dssp HHC-
T ss_pred HHHH
Confidence 6544
No 20
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=5.7e-36 Score=308.05 Aligned_cols=226 Identities=22% Similarity=0.267 Sum_probs=130.4
Q ss_pred cccccCCcHHHHHHHcCCHHHHHHHHH----cCCCCCC---CCccHHHHHHHcCCHHHHHHHHhCCCCccccC-CCccHH
Q psy817 116 ASQAEKTTALLWCVFVKREDLLDALHQ----LGADLSN---DKYGALHLAAFNGSIKGCSWLMLHGHDINFTK-DSYTPL 187 (854)
Q Consensus 116 ~~~~~~~t~L~~Aa~~g~~~iv~~Ll~----~g~~~~~---~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~-~g~t~L 187 (854)
..|.+|.||||+|+..|+.+++++|++ .|++++. .|.||||+|+..|+.+++++|+++|++++..+ +|.|||
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l 83 (241)
T 1k1a_A 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAA 83 (241)
T ss_dssp ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHH
Confidence 456677788888888888888777776 5666644 67777777777777777777777777777654 467777
Q ss_pred HHHHhCCCHHHHHHHHhCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q psy817 188 HFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGM 267 (854)
Q Consensus 188 ~~A~~~~~~~iv~~Ll~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~ 267 (854)
|+|+..|+.+++++|+++++.. +.+++..|..|.||||+|+..|+.+++++|++++
T Consensus 84 ~~A~~~~~~~~~~~Ll~~~~~~-----------------------~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g- 139 (241)
T 1k1a_A 84 HLACEHRSPTCLRALLDSAAPG-----------------------TLDLEARNYDGLTALHVAVNTECQETVQLLLERG- 139 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTT-----------------------SCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-
T ss_pred HHHHHcCCHHHHHHHHHcCCCc-----------------------cccccccCcCCCcHHHHHHHcCCHHHHHHHHHcC-
Confidence 7777777777666666665521 2244555555555555555555555555555543
Q ss_pred CCccccccCCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcH
Q psy817 268 ADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTP 347 (854)
Q Consensus 268 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 347 (854)
++++..+...|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..|..|.||
T Consensus 140 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tp 219 (241)
T 1k1a_A 140 ADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTP 219 (241)
T ss_dssp CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCT
T ss_pred CCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCH
Confidence 44444433334455555555555555555555555555555555555555555555555555555555544444444444
Q ss_pred HHHHHhcCCCChHHHHHHHh
Q psy817 348 LHASLSKNILSVHPLEILLK 367 (854)
Q Consensus 348 L~~a~~~~~~~~~~v~~Ll~ 367 (854)
+|+|+..+ ..++++.|.+
T Consensus 220 l~~A~~~~--~~~i~~~l~~ 237 (241)
T 1k1a_A 220 LMVARSRR--VIDILRGKAT 237 (241)
T ss_dssp TTTCSSHH--HHHHHTC---
T ss_pred HHHHHhcC--cHHHHhhhcc
Confidence 44444444 3334444433
No 21
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=4.2e-35 Score=300.79 Aligned_cols=220 Identities=26% Similarity=0.366 Sum_probs=161.2
Q ss_pred CCccHHHHHHHcCCHHHHHHHHhCCCCccccC-CCccHHHHHHhCCCHHHHHHHHhCCCCCCchHHHHHHHcCCHHHHHH
Q psy817 150 DKYGALHLAAFNGSIKGCSWLMLHGHDINFTK-DSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQL 228 (854)
Q Consensus 150 ~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~-~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~t~L~~A~~~~~~~~v~~ 228 (854)
+|.||||+|+..|+.+++++|+++|++++..+ +|.||||+|+..|+ .+++++
T Consensus 10 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~---------------------------~~~v~~ 62 (237)
T 3b7b_A 10 NKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNH---------------------------LEAVKY 62 (237)
T ss_dssp CSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC---------------------------HHHHHH
T ss_pred CCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCC---------------------------HHHHHH
Confidence 67777777777777777777777777776543 35555555555544 444444
Q ss_pred HHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCC
Q psy817 229 LLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERN 308 (854)
Q Consensus 229 Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 308 (854)
|+++|++++..+..|.||||+|+..|+.+++++|++++..+++..+ ..|.||||+|+..|+.+++++|+++|++++.++
T Consensus 63 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~ 141 (237)
T 3b7b_A 63 LIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQD-DGGWTPMIWATEYKHVDLVKLLLSKGSDINIRD 141 (237)
T ss_dssp HHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccC
Confidence 4555566677777788888888888888888888877666666554 345688888888888888888888888887778
Q ss_pred CCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCCCCCccCCCCCCCHHHHHHH
Q psy817 309 HKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAAL 388 (854)
Q Consensus 309 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~ 388 (854)
..|.||||+|+..|+.+++++|+++|++++..|..|.||||.|+..+ +.+++++|+++|++++.+|..|.||||+|+.
T Consensus 142 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~ 219 (237)
T 3b7b_A 142 NEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAAREN--RYDCVVLFLSRDSDVTLKNKEGETPLQCASL 219 (237)
T ss_dssp TTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTT--CHHHHHHHHTTTCCTTCCCTTSCCHHHHSCT
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhC--CHhHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence 88888888888888888888888888888777777888888888777 6677888888888888778788888888887
Q ss_pred cCCHHHHHHHH
Q psy817 389 SELSQCVDCLI 399 (854)
Q Consensus 389 ~~~~~~v~~Ll 399 (854)
+++.+.+..++
T Consensus 220 ~~~~~~~~~l~ 230 (237)
T 3b7b_A 220 NSQVWSALQMS 230 (237)
T ss_dssp TCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77765554444
No 22
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=8e-36 Score=314.76 Aligned_cols=247 Identities=22% Similarity=0.226 Sum_probs=170.9
Q ss_pred CCCCccHHHHHHHcCCHHHHHHHHhCCCC---ccccC-CCccHHHHHHhCCCHHHHHHHHhCCCCCCchHHHHHHHcCCH
Q psy817 148 SNDKYGALHLAAFNGSIKGCSWLMLHGHD---INFTK-DSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAV 223 (854)
Q Consensus 148 ~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~---~~~~~-~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~t~L~~A~~~~~~ 223 (854)
|.+|+||||+|+..|+.++|++|+++|++ ++..+ .|.||||+|+..|+.++
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~------------------------- 60 (282)
T 1oy3_D 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST------------------------- 60 (282)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHH-------------------------
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHH-------------------------
Confidence 45788888888888888888888888877 44433 36666666665555555
Q ss_pred HHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccc------------ccCCcCcHHHHHHHcCC-
Q psy817 224 DCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIK------------TKERRVTALHLAAENGY- 290 (854)
Q Consensus 224 ~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~------------~~~~~~t~L~~A~~~g~- 290 (854)
+++|+++|++++..|..|.||||+|+..|+.+++++|++++ ++.... ....+.++++.++..+.
T Consensus 61 --v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (282)
T 1oy3_D 61 --VEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPR-PSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPE 137 (282)
T ss_dssp --HHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSC-CSSCCCC-----------------------------
T ss_pred --HHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccC-CCCchhhHHHHhhcccccCcchhcchhhhccccccc
Confidence 45555555566666777777777777777777777777655 221110 11233466776666554
Q ss_pred HHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCC-CCcHHHHHHhcCCCChHHHHHHHhCC
Q psy817 291 VECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCD-NRTPLHASLSKNILSVHPLEILLKWG 369 (854)
Q Consensus 291 ~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~a~~~~~~~~~~v~~Ll~~g 369 (854)
......+...+.+++..+..|.||||+|+..|+.+++++|+++|++++..+.. |.||||.|+..+ +.+++++|+++|
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~--~~~~v~~Ll~~g 215 (282)
T 1oy3_D 138 NEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ--AASVLELLLKAG 215 (282)
T ss_dssp ------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT--CHHHHHHHHHTT
T ss_pred hhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcC--CHHHHHHHHHcC
Confidence 34455666778899999999999999999999999999999999999998865 999999999999 889999999999
Q ss_pred CCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHhcCC
Q psy817 370 ANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTP 424 (854)
Q Consensus 370 ~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~ 424 (854)
++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||++.|.....
T Consensus 216 ad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 216 ADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp CCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC---------------
T ss_pred CCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCccc
Confidence 9999999999999999999999999999999999999999999999999976543
No 23
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=4.1e-35 Score=299.52 Aligned_cols=226 Identities=26% Similarity=0.290 Sum_probs=181.5
Q ss_pred CCccHHHHHHHcCCHHHHHHHHhCCCC-ccccCCCccHHHHHHhCCCHHHHHHHHhCCCCCCchHHHHHHHcCCHHHHHH
Q psy817 150 DKYGALHLAAFNGSIKGCSWLMLHGHD-INFTKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQL 228 (854)
Q Consensus 150 ~g~t~L~~A~~~g~~~iv~~Ll~~g~~-~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~t~L~~A~~~~~~~~v~~ 228 (854)
.+.||||.|+..|+.+++++|++++.+ ++..+ ..|.||||.|+..|+.+++++
T Consensus 5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~--------------------------~~g~t~L~~A~~~g~~~~v~~ 58 (231)
T 3aji_A 5 VSNIMICNLAYSGKLDELKERILADKSLATRTD--------------------------QDSRTALHWACSAGHTEIVEF 58 (231)
T ss_dssp CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCC--------------------------TTSCCHHHHHHHHTCHHHHHH
T ss_pred cccchHHHHHHhCCHHHHHHHHHhchhhhhcCC--------------------------CCCCCHHHHHHHcCcHHHHHH
Confidence 355667777777777777666665433 22222 114455555555556666666
Q ss_pred HHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCC
Q psy817 229 LLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERN 308 (854)
Q Consensus 229 Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 308 (854)
|+++|++++..|..|.||||+|+..|+.+++++|++++ ++++.++ ..|.||||+|+..|+.+++++|+++|++++..+
T Consensus 59 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~ 136 (231)
T 3aji_A 59 LLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKG-AHVNAVN-QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136 (231)
T ss_dssp HHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcC-CCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence 66677778888888999999999999999999999876 7777665 456699999999999999999999999999899
Q ss_pred CCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCCCCCccCCCCCCCHHHHHHH
Q psy817 309 HKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAAL 388 (854)
Q Consensus 309 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~ 388 (854)
..|.||||+|+..|+.+++++|+++|++++..|..|.||||.|+..+ +.+++++|+++|++++.+|..|.||+++|+.
T Consensus 137 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~ 214 (231)
T 3aji_A 137 HYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEE--RVEEAKFLVTQGASIYIENKEEKTPLQVAKG 214 (231)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTT--CHHHHHHHHHTTCCSCCCCTTSCCHHHHSCH
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCC--CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHh
Confidence 99999999999999999999999999999999999999999999988 7888999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCCCc
Q psy817 389 SELSQCVDCLIMHGADI 405 (854)
Q Consensus 389 ~~~~~~v~~Ll~~ga~~ 405 (854)
.++.+++++|.++|+++
T Consensus 215 ~~~~~i~~lL~~~~a~i 231 (231)
T 3aji_A 215 GLGLILKRLAEGEEASM 231 (231)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHccccccC
Confidence 99999999999888763
No 24
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=3.1e-35 Score=302.49 Aligned_cols=226 Identities=25% Similarity=0.411 Sum_probs=182.9
Q ss_pred CCCCccHHHHHHHcCCHHHHHHHHh----CCCCccccC-CCccHHHHHHhCCCHHHHHHHHhCCCCCCchHHHHHHHcCC
Q psy817 148 SNDKYGALHLAAFNGSIKGCSWLML----HGHDINFTK-DSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNA 222 (854)
Q Consensus 148 ~~~g~t~L~~A~~~g~~~iv~~Ll~----~g~~~~~~~-~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~t~L~~A~~~~~ 222 (854)
|.+|.||||+|+..|+.+++++|++ .|++++..+ +|.||||+|+..| +
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~---------------------------~ 58 (241)
T 1k1a_A 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITT---------------------------L 58 (241)
T ss_dssp -CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTT---------------------------C
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcC---------------------------C
Confidence 4578888888888888888888876 677777554 3566666655554 4
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC---CCccccccCCcCcHHHHHHHcCCHHHHHHHHh
Q psy817 223 VDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGM---ADVDIKTKERRVTALHLAAENGYVECLRILLE 299 (854)
Q Consensus 223 ~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~---~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 299 (854)
.+++++|+++|++++..|..|.||||+|+..|+.+++++|++++. .+++..+ ..|.||||+|+..|+.+++++|++
T Consensus 59 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~ 137 (241)
T 1k1a_A 59 PSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN-YDGLTALHVAVNTECQETVQLLLE 137 (241)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccC-cCCCcHHHHHHHcCCHHHHHHHHH
Confidence 555555556667778888899999999999999999999998873 1556554 456799999999999999999999
Q ss_pred cCCCcCCCC-CCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCCCCCccCCCC
Q psy817 300 NHANCNERN-HKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIF 378 (854)
Q Consensus 300 ~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~ 378 (854)
+|++++..+ ..|.||||+|+..|+.+++++|+++|++++..|..|.||||.|+..+ +.+++++|+++|++++.+|..
T Consensus 138 ~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~ga~~~~~~~~ 215 (241)
T 1k1a_A 138 RGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRG--LLPLVRTLVRSGADSSLKNCH 215 (241)
T ss_dssp TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHT--CHHHHHHHHHTTCCTTCCCTT
T ss_pred cCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC--CHHHHHHHHhcCCCCCCcCCC
Confidence 999998888 78999999999999999999999999999999999999999999998 788899999999999999999
Q ss_pred CCCHHHHHHHcCCHHHHHHHHHcCC
Q psy817 379 GYSPIHIAALSELSQCVDCLIMHGA 403 (854)
Q Consensus 379 g~t~L~~A~~~~~~~~v~~Ll~~ga 403 (854)
|.||||+|+..|+.++++.|.++++
T Consensus 216 g~tpl~~A~~~~~~~i~~~l~~~~a 240 (241)
T 1k1a_A 216 NDTPLMVARSRRVIDILRGKATRPA 240 (241)
T ss_dssp SCCTTTTCSSHHHHHHHTC------
T ss_pred CCCHHHHHHhcCcHHHHhhhccCCC
Confidence 9999999999999999999888765
No 25
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.5e-34 Score=296.53 Aligned_cols=213 Identities=29% Similarity=0.398 Sum_probs=198.8
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcC
Q psy817 210 HETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENG 289 (854)
Q Consensus 210 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g 289 (854)
|.||||.|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++++ ++++.++ ..|.||||+|+..|
T Consensus 11 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~-~~g~t~L~~A~~~~ 88 (237)
T 3b7b_A 11 KRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG-ALVDPKD-AEGSTCLHLAAKKG 88 (237)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT-CCCCCCC-TTSCCHHHHHHHTT
T ss_pred CCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCC-CCCCCCC-CCCCcHHHHHHHcC
Confidence 567777777777788888888888899999999999999999999999999999986 7888765 45679999999999
Q ss_pred CHHHHHHHHhcC-CCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhC
Q psy817 290 YVECLRILLENH-ANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKW 368 (854)
Q Consensus 290 ~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~ 368 (854)
+.+++++|+++| .+++..+..|.||||.|+..|+.+++++|+++|++++..+..|.||||.|+..+ +.+++++|+++
T Consensus 89 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~--~~~~~~~Ll~~ 166 (237)
T 3b7b_A 89 HYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSG--CVDIAEILLAA 166 (237)
T ss_dssp CHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHC--CHHHHHHHHTT
T ss_pred CHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCC--CHHHHHHHHHc
Confidence 999999999998 889999999999999999999999999999999999999999999999999999 88999999999
Q ss_pred CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHhcCCcc
Q psy817 369 GANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSS 426 (854)
Q Consensus 369 g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~ 426 (854)
|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+.++...
T Consensus 167 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~ 224 (237)
T 3b7b_A 167 KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVW 224 (237)
T ss_dssp TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHH
T ss_pred CCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999887653
No 26
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.6e-35 Score=312.44 Aligned_cols=239 Identities=18% Similarity=0.175 Sum_probs=176.0
Q ss_pred CCHHHHHHHHHcCCCC-CCCCccHHHHHHHcCCHHHHHHHHhCCCCccccCCCccHHHHHHhCCCHHHHHHHHhCCCCCC
Q psy817 132 KREDLLDALHQLGADL-SNDKYGALHLAAFNGSIKGCSWLMLHGHDINFTKDSYTPLHFAVLGNYVDCAKFLIKNKAHIH 210 (854)
Q Consensus 132 g~~~iv~~Ll~~g~~~-~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~ 210 (854)
+..++.++|.+.+.+. |.+|.||||+|+..|+.+++++|+++|++++.. +|.||||+|+..|
T Consensus 11 ~~~~v~~lL~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~g~t~L~~A~~~g---------------- 73 (285)
T 3kea_A 11 KSKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL-ENEFPLHQAATLE---------------- 73 (285)
T ss_dssp CHHHHHHHHHSTTTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC-TTCCHHHHHTTSS----------------
T ss_pred CHHHHHHHHHhCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC-CCCCHHHHHHHcC----------------
Confidence 3445555555554433 337777777777777777777777777777644 3556665555555
Q ss_pred chHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcCC
Q psy817 211 ETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGY 290 (854)
Q Consensus 211 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~ 290 (854)
+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++++ ++++.++..++.||||+|+..|+
T Consensus 74 -----------~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~~t~L~~A~~~~~ 141 (285)
T 3kea_A 74 -----------DTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKN-WRLMFYGKTGWKTSFYHAVMLND 141 (285)
T ss_dssp -----------SCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHC-GGGGGCSSSGGGSHHHHHHHTTC
T ss_pred -----------CHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcC-CCCCccCCCCCCCHHHHHHHcCC
Confidence 555555566666677778888888888888888888888888875 77777665443688888888888
Q ss_pred HHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcH-HHHHHhcCCCChHHHHHHHhCC
Q psy817 291 VECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTP-LHASLSKNILSVHPLEILLKWG 369 (854)
Q Consensus 291 ~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~a~~~~~~~~~~v~~Ll~~g 369 (854)
.+++++|+++|++.... ..|.||||+|+..|+.+++++|+++|++++..|..|.|| ||.|+..+ +.+++++|+++|
T Consensus 142 ~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~--~~~~v~~Ll~~g 218 (285)
T 3kea_A 142 VSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNK--DIEMLQALFKYD 218 (285)
T ss_dssp HHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHT--CHHHHHHHTTSC
T ss_pred HHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcC--CHHHHHHHHHcC
Confidence 88888888888765322 277888888888888888888888888888888888886 88888888 677788888888
Q ss_pred CCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccC
Q psy817 370 ANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKT 409 (854)
Q Consensus 370 ~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~ 409 (854)
++++..|. .|+..|+.+++++|+++|+++....
T Consensus 219 ad~~~~~~-------~a~~~~~~~iv~~Ll~~g~~~~~~~ 251 (285)
T 3kea_A 219 INIYSANL-------ENVLLDDAEIAKMIIEKHVEYKSDS 251 (285)
T ss_dssp BCSTTTTG-------GGGTTTCHHHHHHHHHHHHHHTTCT
T ss_pred CCCCCCCh-------hhhhcCCHHHHHHHHHcCCCCCCcc
Confidence 88887773 4567888999999999988876544
No 27
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.1e-35 Score=313.77 Aligned_cols=224 Identities=17% Similarity=0.182 Sum_probs=174.0
Q ss_pred hcccccCCcHHHHHHHcCCHHHHHHHHHcCCCCCC-CCccHHHHHHHcCCHHHHHHHHhCCCCccccC-CCccHHHHHHh
Q psy817 115 KASQAEKTTALLWCVFVKREDLLDALHQLGADLSN-DKYGALHLAAFNGSIKGCSWLMLHGHDINFTK-DSYTPLHFAVL 192 (854)
Q Consensus 115 ~~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~-~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~-~g~t~L~~A~~ 192 (854)
+..|..|.||||+|+..|+.+++++|+++|++++. +|.||||+|+..|+.+++++|+++|++++..+ .|.||||+|+.
T Consensus 25 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~ 104 (285)
T 3kea_A 25 FKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVD 104 (285)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHH
Confidence 56778899999999999999999999999999986 89999999999999999999999999998765 47888888877
Q ss_pred CCCHHHHHHHHhCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC-CcHHHHHHHcCCHHHHHHHHHcCCCCcc
Q psy817 193 GNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKG-VSPLHIAADRGLISCLKAILDSGMADVD 271 (854)
Q Consensus 193 ~~~~~iv~~Ll~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g-~t~L~~A~~~g~~~iv~~Ll~~~~~~~~ 271 (854)
.|+.+++++|+++ |++++..|..| .||||+|+..|+.+++++|++++ ++..
T Consensus 105 ~g~~~~v~~Ll~~---------------------------ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g-~~~~ 156 (285)
T 3kea_A 105 SGNMQTVKLFVKK---------------------------NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI-PSTF 156 (285)
T ss_dssp TTCHHHHHHHHHH---------------------------CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTS-CTTC
T ss_pred cCCHHHHHHHHhc---------------------------CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCC-Cccc
Confidence 7766666666655 44556667777 67777777777777777777776 3331
Q ss_pred ccccCCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCH-HHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHH
Q psy817 272 IKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIP-LHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHA 350 (854)
Q Consensus 272 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~-L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 350 (854)
+...|.||||+|+..|+.+++++|+++|++++.+|..|.|| ||+|+..|+.+++++|+++|++++..|. .
T Consensus 157 --~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~ 227 (285)
T 3kea_A 157 --DLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------E 227 (285)
T ss_dssp --CCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------G
T ss_pred --cccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------h
Confidence 12256677777777777777787777777777777777776 7777777778888888877777776662 3
Q ss_pred HHhcCCCChHHHHHHHhCCCCCccCCC
Q psy817 351 SLSKNILSVHPLEILLKWGANVNARDI 377 (854)
Q Consensus 351 a~~~~~~~~~~v~~Ll~~g~d~n~~d~ 377 (854)
|+..+ +.+++++|+++|++++..+.
T Consensus 228 a~~~~--~~~iv~~Ll~~g~~~~~~~~ 252 (285)
T 3kea_A 228 NVLLD--DAEIAKMIIEKHVEYKSDSY 252 (285)
T ss_dssp GGTTT--CHHHHHHHHHHHHHHTTCTT
T ss_pred hhhcC--CHHHHHHHHHcCCCCCCccc
Confidence 44455 67777888877777665443
No 28
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=3.6e-35 Score=312.74 Aligned_cols=251 Identities=26% Similarity=0.320 Sum_probs=187.5
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCC------------CCccHHHHHHHcCCHHHHHHHHhCCCCccccC-CCccHHHHHHhC
Q psy817 127 WCVFVKREDLLDALHQLGADLSN------------DKYGALHLAAFNGSIKGCSWLMLHGHDINFTK-DSYTPLHFAVLG 193 (854)
Q Consensus 127 ~Aa~~g~~~iv~~Ll~~g~~~~~------------~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~-~g~t~L~~A~~~ 193 (854)
.+|..|+.+.++.++..+.+++. +|.||||.||..|+.++|++|+++|+++|..+ +|.||||+|+..
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 83 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACID 83 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence 46677777777777766554321 67789999999999999999999999998765 588999999999
Q ss_pred CCHHHHHHHHhCCCCC------CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q psy817 194 NYVDCAKFLIKNKAHI------HETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGM 267 (854)
Q Consensus 194 ~~~~iv~~Ll~~~~~~------~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~ 267 (854)
|+.+++++|+++|+++ |.||||.|+..|+.+++++|+++|++++..|..|.||||+|+..|+.++++.++...+
T Consensus 84 g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~ 163 (299)
T 1s70_B 84 DNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQG 163 (299)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcC
Confidence 9999999888888776 6788888888888888888888888888888889999999988888888888887765
Q ss_pred CCccccccCCcCcHHHHHHHcCCHHHHHHHHhcCC-CcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCc
Q psy817 268 ADVDIKTKERRVTALHLAAENGYVECLRILLENHA-NCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRT 346 (854)
Q Consensus 268 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 346 (854)
.+++....... ++++ ..++.++..+. .....+..|.||||+|+..|+.+++++|+++|++++..|..|.|
T Consensus 164 ~~~~~~~~~~~-~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~t 234 (299)
T 1s70_B 164 VDIEAARKEEE-RIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWT 234 (299)
T ss_dssp CCHHHHHHHHH-HHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCC
T ss_pred CCchhhhhhhh-hHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCc
Confidence 65554332211 2222 22333444433 33445667777777777777777777777777777777777777
Q ss_pred HHHHHHhcCCCChHHHHHHHhCCCCCccCCCCCCCHHHHHHH
Q psy817 347 PLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAAL 388 (854)
Q Consensus 347 ~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~ 388 (854)
|||+|+..| +.+++++|+++|++++.+|..|.||||+|+.
T Consensus 235 pL~~A~~~~--~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~ 274 (299)
T 1s70_B 235 PLHAAAHWG--KEEACRILVENLCDMEAVNKVGQTAFDVADE 274 (299)
T ss_dssp HHHHHHHTT--CHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred HHHHHHhcC--CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 777777776 6666777777777777777777777777754
No 29
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-35 Score=309.05 Aligned_cols=233 Identities=21% Similarity=0.277 Sum_probs=137.9
Q ss_pred CCccHHHHHHHcCCHHHHHHHHhCCCCccccCCCccHHHHHHhCCCHHHHHHHHhCCCCCCchHHHHHHHcCCH-HHHHH
Q psy817 150 DKYGALHLAAFNGSIKGCSWLMLHGHDINFTKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAV-DCVQL 228 (854)
Q Consensus 150 ~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~t~L~~A~~~~~~-~~v~~ 228 (854)
.+.+||+.||.+|+.++|++|+++|++....... .+......+.|||+.|+..++. .+++.
T Consensus 10 ~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~------------------~~~~~~~~~~t~L~~a~~~~~~~~~v~~ 71 (269)
T 4b93_B 10 REVEKLLRAVADGDLEMVRYLLEWTEEDLEDAED------------------TVSAADPEFCHPLCQCPKCAPAQKRLAK 71 (269)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTCC-------------------------------------------------------
T ss_pred cchhHHHHHHHcCCHHHHHHHHHCCCcccccccc------------------cccccCccCCCHHHHHHHhCCHHHHHHH
Confidence 4566777777777777777777776653211000 0000111144556655555443 36677
Q ss_pred HHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCC
Q psy817 229 LLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERN 308 (854)
Q Consensus 229 Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 308 (854)
|++.|+++|..|.+|.||||+|+..|+.+++++|++.+ ++++..+ ..|.||++.|+..++.+++++|+++|++++.+|
T Consensus 72 Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~-a~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d 149 (269)
T 4b93_B 72 VPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHG-ANAGARN-ADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKD 149 (269)
T ss_dssp ---CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTT-CCTTCCC-TTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC
T ss_pred HHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC-CCcCccC-CCCCCccccccccChHHHHHHHHHCCCCCCCCC
Confidence 77777777777777777777777777777777777765 6666654 345577777777777777777777777777777
Q ss_pred CCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCCCCCccCCCCCCCHHHHHHH
Q psy817 309 HKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAAL 388 (854)
Q Consensus 309 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~ 388 (854)
..|.||||+|+..|+.+++++|+++|+++|..+..|.||||+|+..| +.+++++|+++|+|+|.+|..|.||||+|++
T Consensus 150 ~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~ 227 (269)
T 4b93_B 150 LSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEK--HVFVVELLLLHGASVQVLNKRQRTAVDCAEQ 227 (269)
T ss_dssp TTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTT--CHHHHHHHHHTTCCSCCCCTTSCCSGGGSCT
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcC--CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHh
Confidence 77777777777777777777777777777777777777777777777 6677777777777777777777777777776
Q ss_pred cCC-HHHHHHHHHcCCC
Q psy817 389 SEL-SQCVDCLIMHGAD 404 (854)
Q Consensus 389 ~~~-~~~v~~Ll~~ga~ 404 (854)
+++ .++++.+...+++
T Consensus 228 ~~~i~~lL~~l~~~~~~ 244 (269)
T 4b93_B 228 NSKIMELLQVVPSCVAS 244 (269)
T ss_dssp TCHHHHHTTC-------
T ss_pred CCcHHHHHHHHHHhchh
Confidence 654 2344444444433
No 30
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=4.6e-34 Score=293.38 Aligned_cols=219 Identities=23% Similarity=0.252 Sum_probs=149.3
Q ss_pred ccccCCcHHHHHHHcCCHHHHHHHHHcCCCCCC---CCccHHHHHHHcCCHHHHHHHHhCCCCccccC--CCccHHHHHH
Q psy817 117 SQAEKTTALLWCVFVKREDLLDALHQLGADLSN---DKYGALHLAAFNGSIKGCSWLMLHGHDINFTK--DSYTPLHFAV 191 (854)
Q Consensus 117 ~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~---~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~--~g~t~L~~A~ 191 (854)
.|..+.|+|++|+..|+.+++++|++.|++++. .|.||||+|+..|+.+++++|+++|++++... .|.||||+|+
T Consensus 5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~ 84 (240)
T 3eu9_A 5 IDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWAT 84 (240)
T ss_dssp CSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHH
T ss_pred cccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHH
Confidence 456677888888888888888888888887754 77888888888888888888888888776433 2677777777
Q ss_pred hCCCHHHHHHHHhCCCCC------CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC-HHHHHHHHH
Q psy817 192 LGNYVDCAKFLIKNKAHI------HETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGL-ISCLKAILD 264 (854)
Q Consensus 192 ~~~~~~iv~~Ll~~~~~~------~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~-~~iv~~Ll~ 264 (854)
..|+.+++++|+++|+++ |.||||.|+..|+.+++++|+++|++++..+..|.||||.|+..++ .+++++|++
T Consensus 85 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~ 164 (240)
T 3eu9_A 85 RQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLT 164 (240)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHh
Confidence 777777777777766554 4566666666666666666666666666666666666666664444 566666666
Q ss_pred cCCCCccccccCCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCC
Q psy817 265 SGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQ 336 (854)
Q Consensus 265 ~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 336 (854)
.+ ++++..+...|.||||+|+..|+.+++++|+++|++++.++..|.|||++|+..|+.+++++|++++++
T Consensus 165 ~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 165 FN-VSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp TT-CCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred cC-CCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence 54 556555544555666666666666666666666666666666666666666666666666666666554
No 31
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=3.8e-34 Score=292.41 Aligned_cols=222 Identities=23% Similarity=0.304 Sum_probs=205.2
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHc
Q psy817 210 HETIVHSAVSTNAVDCVQLLLSLQI-NPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAEN 288 (854)
Q Consensus 210 ~~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~ 288 (854)
+.+|||.|+..|+.+.+++|++.+. ..+..|..|.||||+|+..|+.+++++|++++ ++++.++ ..|.||||+|+..
T Consensus 6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~-~~g~t~L~~A~~~ 83 (231)
T 3aji_A 6 SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG-VPVNDKD-DAGWSPLHIAASA 83 (231)
T ss_dssp SSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCC-TTSCCHHHHHHHH
T ss_pred ccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhC-CCCCCcC-CCCCCHHHHHHHc
Confidence 5678888888888888888887653 46778999999999999999999999999986 8888765 4567999999999
Q ss_pred CCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhC
Q psy817 289 GYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKW 368 (854)
Q Consensus 289 g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~ 368 (854)
|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..+ +.+++++|+++
T Consensus 84 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~ 161 (231)
T 3aji_A 84 GXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKG--NLKMVHILLFY 161 (231)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT--CHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC--CHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 88999999999
Q ss_pred CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHhcCCcchHHhhhhcC
Q psy817 369 GANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLD 435 (854)
Q Consensus 369 g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ 435 (854)
|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|.+.+..++..++...+
T Consensus 162 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~ 228 (231)
T 3aji_A 162 KASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEE 228 (231)
T ss_dssp TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHH
T ss_pred CCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccc
Confidence 9999999999999999999999999999999999999999999999999999888888877776544
No 32
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-34 Score=302.21 Aligned_cols=230 Identities=23% Similarity=0.324 Sum_probs=170.4
Q ss_pred CccHHHHHHhCCCHHHHHHHHhCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH-HHHHH
Q psy817 183 SYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLI-SCLKA 261 (854)
Q Consensus 183 g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~-~iv~~ 261 (854)
+.+||+.|+..|+.++|++|++.|++... .....++..+..|.|||+.|+..++. .+++.
T Consensus 11 ~~~~L~~A~~~G~~~~v~~LL~~~~~~~~-------------------~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~ 71 (269)
T 4b93_B 11 EVEKLLRAVADGDLEMVRYLLEWTEEDLE-------------------DAEDTVSAADPEFCHPLCQCPKCAPAQKRLAK 71 (269)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTCC--------------------------------------------------------
T ss_pred chhHHHHHHHcCCHHHHHHHHHCCCcccc-------------------cccccccccCccCCCHHHHHHHhCCHHHHHHH
Confidence 56677777777777777777776654311 01123466788899999999988876 47888
Q ss_pred HHHcCCCCccccccCCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCcc
Q psy817 262 ILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASD 341 (854)
Q Consensus 262 Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 341 (854)
|++.| +++|.++ ..|.||||+|+..|+.+++++|+++|++++..+..|.||++.|+..++.+++++|+++|+++|..|
T Consensus 72 Ll~~G-advn~~d-~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d 149 (269)
T 4b93_B 72 VPASG-LGVNVTS-QDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKD 149 (269)
T ss_dssp ---CC-CCTTCCC-TTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC
T ss_pred HHHCC-CCCCCcC-CCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCC
Confidence 99876 9999876 467799999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHhcCCCChHHHHHHHhCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHh
Q psy817 342 CDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMR 421 (854)
Q Consensus 342 ~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~ 421 (854)
..|+||||+|+..| +.+++++|+++|+|+|.+|..|.||||+|+..|+.++|++|+++|+|++.+|..|.|||++|++
T Consensus 150 ~~g~TpL~~A~~~g--~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~ 227 (269)
T 4b93_B 150 LSGNTPLIYACSGG--HHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQ 227 (269)
T ss_dssp TTCCCHHHHHHHTT--CGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCT
T ss_pred CCCCCHHHHHHHCC--CHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHh
Confidence 99999999999999 7788999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCcchHHhhhhcCCc
Q psy817 422 NTPSSISSVRKKLDSS 437 (854)
Q Consensus 422 ~~~~~~~~~~~~~~~~ 437 (854)
++ .+..+++.+...
T Consensus 228 ~~--~i~~lL~~l~~~ 241 (269)
T 4b93_B 228 NS--KIMELLQVVPSC 241 (269)
T ss_dssp TC--HHHHHTTC----
T ss_pred CC--cHHHHHHHHHHh
Confidence 55 355555554443
No 33
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=5.5e-34 Score=290.48 Aligned_cols=211 Identities=23% Similarity=0.278 Sum_probs=189.2
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCccccccCCcCcHHHHHHH
Q psy817 210 HETIVHSAVSTNAVDCVQLLLSLQINPNV-LNNKGVSPLHIAADRGLISCLKAILDSG-MADVDIKTKERRVTALHLAAE 287 (854)
Q Consensus 210 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~d~~g~t~L~~A~~~g~~~iv~~Ll~~~-~~~~~~~~~~~~~t~L~~A~~ 287 (854)
|+||||.|+..|+.+++++|++.|.+... .|..|.||||+|+..|+.+++++|++++ ..+++...+..|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 57888888888888888888888777554 8899999999999999999999999986 234444234677899999999
Q ss_pred cCCHHHHHHHHhcC--CCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHH
Q psy817 288 NGYVECLRILLENH--ANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEIL 365 (854)
Q Consensus 288 ~g~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~L 365 (854)
.|+.+++++|+++| ++++..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||.|+..+ +.+++++|
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~--~~~~v~~L 159 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVG--SLKLIELL 159 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTT--CHHHHHHH
T ss_pred cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcC--CHHHHHHH
Confidence 99999999999998 888999999999999999999999999999999999999999999999999999 88899999
Q ss_pred HhCC-CCCccCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCccccCCCCCCHHHHHHhc
Q psy817 366 LKWG-ANVNARDIFGYSPIHIAALSELSQCVDCLI-MHGADISSKTPSGSSALSIIMRN 422 (854)
Q Consensus 366 l~~g-~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~g~t~l~~a~~~ 422 (854)
+++| ++++.+|..|.||||+|+..|+.+++++|+ ++|++++.+|..|.||+++|.+.
T Consensus 160 l~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~ 218 (228)
T 2dzn_A 160 CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE 218 (228)
T ss_dssp HTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST
T ss_pred HhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH
Confidence 9999 999999999999999999999999999999 89999999999999999999654
No 34
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=5.5e-34 Score=289.44 Aligned_cols=216 Identities=24% Similarity=0.273 Sum_probs=186.7
Q ss_pred cCCHHHHHHHHhCCCCcccc--CCCccHHHHHHhCCCHHHHHHHHhCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCC
Q psy817 161 NGSIKGCSWLMLHGHDINFT--KDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNV 238 (854)
Q Consensus 161 ~g~~~iv~~Ll~~g~~~~~~--~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 238 (854)
.|+.+++++|+++|++++.. .+|.||||+|+..| +.+++++|+++|++++.
T Consensus 1 gg~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g---------------------------~~~~v~~Ll~~g~~~~~ 53 (223)
T 2f8y_A 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYS---------------------------RSDAAKRLLEASADANI 53 (223)
T ss_dssp ----CCEETTEETTCCTTCCCTTTCCCHHHHHHHTT---------------------------CHHHHHHHHHTTCCTTC
T ss_pred CCcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcC---------------------------CHHHHHHHHHcCCCCCC
Confidence 36777888888888877643 24666666666555 45555555666777888
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHH
Q psy817 239 LNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLA 318 (854)
Q Consensus 239 ~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A 318 (854)
.|..|.||||+|+..|+.+++++|++++..+++..+ ..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus 54 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A 132 (223)
T 2f8y_A 54 QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM-HDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWA 132 (223)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCC-TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC-CCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHH
Confidence 999999999999999999999999999866777665 4567999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCCCCCccCCCCCCCHHHHHHHcCCHHHHHHH
Q psy817 319 AKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCL 398 (854)
Q Consensus 319 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~L 398 (854)
+..|+.+++++|+++|++++..|..|.||||.|+..+ +.+++++|+++|++++.+|..|.||+++|+..++.+++++|
T Consensus 133 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 210 (223)
T 2f8y_A 133 AAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREG--SYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 210 (223)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT--CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcC--CHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHH
Confidence 9999999999999999999999999999999999999 88999999999999999999999999999999999999999
Q ss_pred HHcCCCcc
Q psy817 399 IMHGADIS 406 (854)
Q Consensus 399 l~~ga~~~ 406 (854)
+++|+...
T Consensus 211 ~~~g~~~~ 218 (223)
T 2f8y_A 211 DEYNLVRS 218 (223)
T ss_dssp HHTTCSSC
T ss_pred HHcCCCcc
Confidence 99998754
No 35
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=4.9e-36 Score=322.89 Aligned_cols=266 Identities=14% Similarity=0.092 Sum_probs=204.9
Q ss_pred cCCHHHHHHHHHcCCCCCC---CCccHHHHHHHcCCHHHHHHHHhCCCCccccCCCccHHHHHHhCCCHHHHHHHHhCCC
Q psy817 131 VKREDLLDALHQLGADLSN---DKYGALHLAAFNGSIKGCSWLMLHGHDINFTKDSYTPLHFAVLGNYVDCAKFLIKNKA 207 (854)
Q Consensus 131 ~g~~~iv~~Ll~~g~~~~~---~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~ 207 (854)
....++|++|+++|++++. .|.|+++ |+.++|+.|+++|++++ .++++.|+......- -..+.
T Consensus 29 ~~~~dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~-----~~~~~~a~~~~~~~~----~~~~~ 94 (327)
T 1sw6_A 29 TFTHDLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPE-----IQEMPTSLNNDSSNR----NSEGG 94 (327)
T ss_dssp ECCTTCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------
T ss_pred hhcCchHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCc-----cccchHhhhcccccc----ccccc
Confidence 4666889999999998854 7888877 89999999999998854 356777765421000 00011
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHH
Q psy817 208 HIHETIVHSAVSTNAVDCVQLLLSLQINPNV-LNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAA 286 (854)
Q Consensus 208 ~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~ 286 (854)
....+..|.|+..+..++++.|++.|+++|. .|..|.||||+|+..|+.+++++|+++| ++++.++ ..|.||||+|+
T Consensus 95 ~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~G-ad~n~~d-~~g~TpLh~A~ 172 (327)
T 1sw6_A 95 SSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG-SNRLYGD-NMGESCLVKAV 172 (327)
T ss_dssp ---------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTBCC-TTCCCHHHHHH
T ss_pred CCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCCcC-CCCCCHHHHHH
Confidence 1123456888888999999999999999999 8999999999999999999999999997 9999776 46779999999
Q ss_pred HcCC---HHHHHHHHhcC-CCcCCCCCCCCCHHHHHHh----cCCHHHHHHHHhC--------------------CCCCC
Q psy817 287 ENGY---VECLRILLENH-ANCNERNHKEQIPLHLAAK----CQSVECMEMLLRK--------------------GSQVN 338 (854)
Q Consensus 287 ~~g~---~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~----~~~~~~v~~Ll~~--------------------g~~~~ 338 (854)
..|+ .++++.|++.+ ++++.+|..|.||||+|+. .|+.+++++|++. |++++
T Consensus 173 ~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~ 252 (327)
T 1sw6_A 173 KSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN 252 (327)
T ss_dssp HSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------
T ss_pred HhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcc
Confidence 9998 78889999887 7799999999999999999 8999999999987 89999
Q ss_pred CccCCCCcHHHHHHhcCCCChHHHHHHHhCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHH
Q psy817 339 ASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSI 418 (854)
Q Consensus 339 ~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~ 418 (854)
..+..|.||||.|+. +++|+++ ++|.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|.|||++
T Consensus 253 ~~~~~g~t~L~~a~~--------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~ 322 (327)
T 1sw6_A 253 DKNGERKDSILENLD--------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDF 322 (327)
T ss_dssp -------CHHHHHCS--------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGG
T ss_pred cccccCCChhHHHHH--------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence 999999999999984 8889988 689999999999999999999999999999999999999999999999
Q ss_pred HHhc
Q psy817 419 IMRN 422 (854)
Q Consensus 419 a~~~ 422 (854)
|+++
T Consensus 323 A~~~ 326 (327)
T 1sw6_A 323 GAGL 326 (327)
T ss_dssp TCC-
T ss_pred HHhc
Confidence 9765
No 36
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=3.7e-33 Score=286.58 Aligned_cols=224 Identities=22% Similarity=0.253 Sum_probs=149.8
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcC
Q psy817 210 HETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENG 289 (854)
Q Consensus 210 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g 289 (854)
|.++|+.|+..|+.+++++|++.|++++..+..|.||||.|+..|+.+++++|++++ ++++......|.||||+|+..|
T Consensus 9 ~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~~~t~L~~A~~~~ 87 (240)
T 3eu9_A 9 STWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKG-AIVDQLGGDLNSTPLHWATRQG 87 (240)
T ss_dssp GGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCBTTTTBCHHHHHHHHT
T ss_pred cchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcC-CcchhhcCCcCCChhHHHHHcC
Confidence 455566666666666666666666666666666777777777777777777777665 5555444444567777777777
Q ss_pred CHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCC
Q psy817 290 YVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWG 369 (854)
Q Consensus 290 ~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g 369 (854)
+.+++++|+++|++++..+..|.||||.|+..|+.+++++|+++|++++..+..|.||||.|+..+. ..+++++|++.|
T Consensus 88 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~-~~~~~~~L~~~~ 166 (240)
T 3eu9_A 88 HLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH-SVDPTRLLLTFN 166 (240)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCC-SSTTHHHHHHTT
T ss_pred CHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCC-hHHHHHHHHhcC
Confidence 7777777777777766666677777777777777777777777777776666677777777765553 245566677777
Q ss_pred CCCccCCC-CCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHhcCCcchHHhhhhcC
Q psy817 370 ANVNARDI-FGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLD 435 (854)
Q Consensus 370 ~d~n~~d~-~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ 435 (854)
++++..+. .|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|++.+..+++..+....
T Consensus 167 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~ 233 (240)
T 3eu9_A 167 VSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR 233 (240)
T ss_dssp CCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred CCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence 77766665 6667777777777777777777777777777777777777777766666666554443
No 37
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.6e-33 Score=287.00 Aligned_cols=215 Identities=20% Similarity=0.236 Sum_probs=150.1
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCC----CCCCccHHHHHHHcCCHHHHHHHHhCCCCc--cc-cC-CCccHHHHHHh
Q psy817 121 KTTALLWCVFVKREDLLDALHQLGADL----SNDKYGALHLAAFNGSIKGCSWLMLHGHDI--NF-TK-DSYTPLHFAVL 192 (854)
Q Consensus 121 ~~t~L~~Aa~~g~~~iv~~Ll~~g~~~----~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~--~~-~~-~g~t~L~~A~~ 192 (854)
|+||||+|+..|+.+++++|++.|++. +..|.||||+|+..|+.+++++|+++|+++ +. .+ .|.||||+|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 578888888888888888888877654 337788888888888888888888888443 32 22 36666666666
Q ss_pred CCCHHHHHHHHhCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc
Q psy817 193 GNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDI 272 (854)
Q Consensus 193 ~~~~~iv~~Ll~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~ 272 (854)
.|+.+++++|+++|. +++++..|..|.||||.|+..|+.+++++|++++ ++++.
T Consensus 82 ~~~~~~~~~Ll~~g~-------------------------~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~ 135 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPL-------------------------KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENG-ASVRI 135 (228)
T ss_dssp HCCHHHHHHHHSSSS-------------------------CCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCSCC
T ss_pred cCCHHHHHHHHhCCC-------------------------CcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcC-CCccc
Confidence 665555555555542 1566666777777777777777777777777764 66666
Q ss_pred cccCCcCcHHHHHHHcCCHHHHHHHHhcC-CCcCCCCCCCCCHHHHHHhcCCHHHHHHHH-hCCCCCCCccCCCCcHHHH
Q psy817 273 KTKERRVTALHLAAENGYVECLRILLENH-ANCNERNHKEQIPLHLAAKCQSVECMEMLL-RKGSQVNASDCDNRTPLHA 350 (854)
Q Consensus 273 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~ 350 (854)
++. .|.||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..|+.+++++|+ ++|++++..|..|.||+|.
T Consensus 136 ~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~ 214 (228)
T 2dzn_A 136 KDK-FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214 (228)
T ss_dssp CCT-TSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGG
T ss_pred cCC-CCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHH
Confidence 543 4557777777777777777777777 777777777777777777777777777777 6777777777777777777
Q ss_pred HHhcCCCChHHHHHHHh
Q psy817 351 SLSKNILSVHPLEILLK 367 (854)
Q Consensus 351 a~~~~~~~~~~v~~Ll~ 367 (854)
|+.. ++.++|++
T Consensus 215 A~~~-----~~~~~l~~ 226 (228)
T 2dzn_A 215 ALNE-----QVKKFFLN 226 (228)
T ss_dssp CSST-----THHHHHHT
T ss_pred HHHH-----HHHHHHHh
Confidence 7543 23555554
No 38
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=3.4e-34 Score=305.18 Aligned_cols=262 Identities=20% Similarity=0.210 Sum_probs=195.5
Q ss_pred HHHHcCCHHHHHHHHhCCCCcccc----------CCCccHHHHHHhCCCHHHHHHHHhCCCCC------CchHHHHHHHc
Q psy817 157 LAAFNGSIKGCSWLMLHGHDINFT----------KDSYTPLHFAVLGNYVDCAKFLIKNKAHI------HETIVHSAVST 220 (854)
Q Consensus 157 ~A~~~g~~~iv~~Ll~~g~~~~~~----------~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~------~~t~L~~A~~~ 220 (854)
.++..|+.+.++.++..+.++... .+|.|||+.|+..|+.+++++|+++|+++ |.||||.|+..
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 83 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACID 83 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence 567778888888888776554321 13567888888888888888887777665 56777777777
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcCCHHHHHHHHhc
Q psy817 221 NAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLEN 300 (854)
Q Consensus 221 ~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~ 300 (854)
|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++++ ++++..+ ..|.||||+|+..|+.++++.++..
T Consensus 84 g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g-~~~~~~~-~~g~t~l~~A~~~~~~~~~~~ll~~ 161 (299)
T 1s70_B 84 DNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQG-AHVGAVN-SEGDTPLDIAEEEAMEELLQNEVNR 161 (299)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCC-TTSCCHHHHCCSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC-CCCCCcC-CCCCCHHHHHHhcchHHHHHHHHhh
Confidence 7777777777777777777777777777777777777777777765 6666654 3455777777777777777766643
Q ss_pred -CCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhC-CCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCCCCCccCCCC
Q psy817 301 -HANCNERNHKEQIPLHLAAKCQSVECMEMLLRK-GSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIF 378 (854)
Q Consensus 301 -~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~ 378 (854)
+.+++..+..+.++++ ..+..++.. +......+..|.||||.|+..| +.+++++|+++|+++|.+|..
T Consensus 162 ~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g--~~~~v~~Ll~~g~d~~~~d~~ 231 (299)
T 1s70_B 162 QGVDIEAARKEEERIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKG--YTEVLKLLIQARYDVNIKDYD 231 (299)
T ss_dssp HTCCHHHHHHHHHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHT--CHHHHHHHHTTTCCTTCCCTT
T ss_pred cCCCchhhhhhhhhHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCC--cHHHHHHHHHcCCCCCCcCCC
Confidence 4444433332222222 223333433 3344456788999999999999 889999999999999999999
Q ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHhcCCcchHHh
Q psy817 379 GYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSV 430 (854)
Q Consensus 379 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~~~~ 430 (854)
|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|.+.....+..+
T Consensus 232 g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~l~~l 283 (299)
T 1s70_B 232 GWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEEL 283 (299)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSGGGHHHHHH
T ss_pred CCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999976444433333
No 39
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.7e-32 Score=278.44 Aligned_cols=214 Identities=23% Similarity=0.263 Sum_probs=198.8
Q ss_pred cCCHHHHHHHHHCCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcCCHHHHHHHH
Q psy817 220 TNAVDCVQLLLSLQINPNVL-NNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILL 298 (854)
Q Consensus 220 ~~~~~~v~~Ll~~g~~~~~~-d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll 298 (854)
+|+.+++++|+++|++++.. |..|.||||+|+..|+.+++++|++++ ++++..+ ..|.||||+|+..|+.+++++|+
T Consensus 1 gg~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll 78 (223)
T 2f8y_A 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS-ADANIQD-NMGRTPLHAAVSADAQGVFQILI 78 (223)
T ss_dssp ----CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCC-TTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcC-CCCCCcC-CCCCCHHHHHHHcCCHHHHHHHH
Confidence 36788899999999998876 899999999999999999999999986 8888765 45679999999999999999999
Q ss_pred hcCC-CcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCCCCCccCCC
Q psy817 299 ENHA-NCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDI 377 (854)
Q Consensus 299 ~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~ 377 (854)
++++ +++..+..|.||||+|+..|+.+++++|+++|++++..|..|.||||.|+..+ +.+++++|+++|++++.+|.
T Consensus 79 ~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~g~~~~~~~~ 156 (223)
T 2f8y_A 79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVN--NVDAAVVLLKNGANKDMQNN 156 (223)
T ss_dssp HBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTT--CHHHHHHHHHTTCCTTCCCT
T ss_pred HcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCCCcCC
Confidence 9987 88999999999999999999999999999999999999999999999999999 88999999999999999999
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHhcCCcchHHhhhhcCCc
Q psy817 378 FGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSS 437 (854)
Q Consensus 378 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~ 437 (854)
.|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|++.++.++..++......
T Consensus 157 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~ 216 (223)
T 2f8y_A 157 REETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV 216 (223)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred CCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence 999999999999999999999999999999999999999999999999999888776654
No 40
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=1.8e-34 Score=310.65 Aligned_cols=229 Identities=18% Similarity=0.136 Sum_probs=159.0
Q ss_pred cccccCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCccHH-----------------------HHHHHcCCHHHHHHHHh
Q psy817 116 ASQAEKTTALLWCVFVKREDLLDALHQLGADLSNDKYGAL-----------------------HLAAFNGSIKGCSWLML 172 (854)
Q Consensus 116 ~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~~~~~~g~t~L-----------------------~~A~~~g~~~iv~~Ll~ 172 (854)
..+..|.|+++ |+.++|+.|+++|++++. +++ |.|+..+..+++++|++
T Consensus 47 ~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~ 118 (327)
T 1sw6_A 47 KALPSPVVNDN-----EQKMKLEAFLQRLLFPEI---QEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPN 118 (327)
T ss_dssp ECBCCCCCCCH-----HHHHHHHHHHHHHHC----------------------------------CHHHHHHHHHHHCTT
T ss_pred cCCCCCCcccC-----chhHHHHHHHHhccCCcc---ccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHh
Confidence 45667888877 999999999999988653 244 44444445555555555
Q ss_pred CCCCccc-cC-CCccHHHHHHhCCCHHHHHHHHhCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q psy817 173 HGHDINF-TK-DSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIA 250 (854)
Q Consensus 173 ~g~~~~~-~~-~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A 250 (854)
+|+++|. .+ +|.|||| +|+..|+.++|++|+++|++++.+|..|.||||+|
T Consensus 119 ~g~dvn~~~d~~g~TpLh---------------------------~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A 171 (327)
T 1sw6_A 119 TQLNLNIPVDEHGNTPLH---------------------------WLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKA 171 (327)
T ss_dssp SCCCSCSCCSTTCCCHHH---------------------------HHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHH
T ss_pred cCCCcccccCCCCCcHHH---------------------------HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence 5555554 22 3455555 55555555666666666777777788888888888
Q ss_pred HHcCC---HHHHHHHHHcCCCCccccccCCcCcHHHHHHH----cCCHHHHHHHHhc--------------------CCC
Q psy817 251 ADRGL---ISCLKAILDSGMADVDIKTKERRVTALHLAAE----NGYVECLRILLEN--------------------HAN 303 (854)
Q Consensus 251 ~~~g~---~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~----~g~~~~v~~Ll~~--------------------~~~ 303 (854)
+..|+ .++++.|++.+.++++.++ ..|.||||+|+. .|+.+++++|++. |++
T Consensus 172 ~~~g~~~~~~~~~~ll~~~~~~~~~~d-~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~ 250 (327)
T 1sw6_A 172 VKSVNNYDSGTFEALLDYLYPCLILED-SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK 250 (327)
T ss_dssp HHSSHHHHTTCHHHHHHHHGGGGGEEC-TTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-------
T ss_pred HHhcccccHHHHHHHHHhhhccccCCC-CCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCC
Confidence 88777 6677777776656666654 455688888887 7788888888776 889
Q ss_pred cCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCCCCCccCCCCCCCHH
Q psy817 304 CNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPI 383 (854)
Q Consensus 304 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L 383 (854)
++.++..|.||||.|+. +++|+++ ++|.+|..|+||||+|+..| +.+++++|+++|+|++.+|..|.|||
T Consensus 251 ~~~~~~~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g--~~~~v~~Ll~~Gad~~~~d~~G~TpL 320 (327)
T 1sw6_A 251 PNDKNGERKDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLG--NISIVDALLDYGADPFIANKSGLRPV 320 (327)
T ss_dssp ---------CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHC--CHHHHHHHHHTTCCTTCCCTTSCCGG
T ss_pred cccccccCCChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcC--CHHHHHHHHHcCCCCcccCCCCCCHH
Confidence 99999999999999986 8999988 68888999999999999999 78899999999999999999999999
Q ss_pred HHHHHcC
Q psy817 384 HIAALSE 390 (854)
Q Consensus 384 ~~A~~~~ 390 (854)
|+|+.+|
T Consensus 321 ~~A~~~g 327 (327)
T 1sw6_A 321 DFGAGLE 327 (327)
T ss_dssp GGTCC--
T ss_pred HHHHhcC
Confidence 9998764
No 41
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=7.9e-32 Score=275.32 Aligned_cols=196 Identities=22% Similarity=0.273 Sum_probs=176.1
Q ss_pred CchHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccc----cccCCcCcHHHH
Q psy817 210 HETIVHSAVSTNAVDCVQLLLSL-QINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDI----KTKERRVTALHL 284 (854)
Q Consensus 210 ~~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~----~~~~~~~t~L~~ 284 (854)
|+||||.|+..|+.+++++|++. |++++..|..|.||||+|+..|+.+++++|++++ +++.. ..+..|.||||+
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAA-PELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHC-GGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcC-chhccccccccCCCCcCHHHH
Confidence 78999999999999999999998 9999999999999999999999999999999987 55421 123467899999
Q ss_pred HHHcCCHHHHHHHHhcCCCcCCCCC-------------CCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHH
Q psy817 285 AAENGYVECLRILLENHANCNERNH-------------KEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHAS 351 (854)
Q Consensus 285 A~~~g~~~~v~~Ll~~~~~~~~~~~-------------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a 351 (854)
|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|+++|++++..|..|+||||+|
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A 161 (232)
T 2rfa_A 82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHIL 161 (232)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence 9999999999999999999888765 799999999999999999999999999999999999999999
Q ss_pred HhcCCCChHHH----HHHHhCCCCC------ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc
Q psy817 352 LSKNILSVHPL----EILLKWGANV------NARDIFGYSPIHIAALSELSQCVDCLIMHGADISSK 408 (854)
Q Consensus 352 ~~~~~~~~~~v----~~Ll~~g~d~------n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~ 408 (854)
+..+ +.+++ ++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++....
T Consensus 162 ~~~~--~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~~~~ 226 (232)
T 2rfa_A 162 ILQP--NKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAA 226 (232)
T ss_dssp HTCS--CHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHcC--ChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccchhh
Confidence 9999 66666 9999999988 689999999999999999999999999999776544
No 42
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=8.8e-31 Score=267.56 Aligned_cols=199 Identities=22% Similarity=0.273 Sum_probs=90.2
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHc-CCCCCC---CCccHHHHHHHcCCHHHHHHHHhCCCCcc-----ccC-CCccHHHHH
Q psy817 121 KTTALLWCVFVKREDLLDALHQL-GADLSN---DKYGALHLAAFNGSIKGCSWLMLHGHDIN-----FTK-DSYTPLHFA 190 (854)
Q Consensus 121 ~~t~L~~Aa~~g~~~iv~~Ll~~-g~~~~~---~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~-----~~~-~g~t~L~~A 190 (854)
|.||||+|+..|+.+++++|++. |++++. +|+||||+|+..|+.+++++|+++|+++. ..+ +|.||||+|
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A 82 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIA 82 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHH
Confidence 45555555555555555555554 544432 45555555555555555555555554431 111 244444444
Q ss_pred HhCCCHHHHHHHHhCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc
Q psy817 191 VLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADV 270 (854)
Q Consensus 191 ~~~~~~~iv~~Ll~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~ 270 (854)
+..|+.+++++|+++|+++.... .+. ......+..|..|.||||+|+..|+.+++++|+++| +++
T Consensus 83 ~~~~~~~~v~~Ll~~g~~~~~~~------~~~--------~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~ 147 (232)
T 2rfa_A 83 VINQNVNLVRALLARGASVSARA------TGS--------VFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHG-ADI 147 (232)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCC------CSG--------GGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTT-CCT
T ss_pred HHcCCHHHHHHHHhCCCCCCccc------CCc--------ceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCC-CCC
Confidence 44444444444444433321000 000 000011222234555555555555555555555543 444
Q ss_pred cccccCCcCcHHHHHHHcCCHHHH----HHHHhcCCCc------CCCCCCCCCHHHHHHhcCCHHHHHHHHhCCC
Q psy817 271 DIKTKERRVTALHLAAENGYVECL----RILLENHANC------NERNHKEQIPLHLAAKCQSVECMEMLLRKGS 335 (854)
Q Consensus 271 ~~~~~~~~~t~L~~A~~~g~~~~v----~~Ll~~~~~~------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 335 (854)
+.++ ..|.||||+|+..|+.+++ ++|+++|++. +.+|..|.||||+|+..|+.+++++|+++|.
T Consensus 148 ~~~d-~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~ 221 (232)
T 2rfa_A 148 RAQD-SLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRK 221 (232)
T ss_dssp TCCC-TTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCC-CCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence 4443 2334555555555555444 5555555544 2444555555555555555555555555444
No 43
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=7.4e-32 Score=276.34 Aligned_cols=214 Identities=19% Similarity=0.186 Sum_probs=148.3
Q ss_pred cccccCCcHHHHHHHcCCHHHHHHHHHcCC----CCCC---CCccHHHHHHHcCCHHHHHHHHhCCCCccccC-CCccHH
Q psy817 116 ASQAEKTTALLWCVFVKREDLLDALHQLGA----DLSN---DKYGALHLAAFNGSIKGCSWLMLHGHDINFTK-DSYTPL 187 (854)
Q Consensus 116 ~~~~~~~t~L~~Aa~~g~~~iv~~Ll~~g~----~~~~---~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~-~g~t~L 187 (854)
..|.+|.||||+|+..|+.+++++|++.+. ++|. .|.||||+|+..|+.+++++|+++|++++..+ .|.|||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 82 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPL 82 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 356677788888888888887777776654 3433 67778888888888888888887777777654 477777
Q ss_pred HHHHhCCCHHHHHHHHhCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q psy817 188 HFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGM 267 (854)
Q Consensus 188 ~~A~~~~~~~iv~~Ll~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~ 267 (854)
|+|+..|+.+++++|+++|++... +..++..+..|.||||+|+..|+.+++++|++++
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~---------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g- 140 (236)
T 1ikn_D 83 HLACEQGCLASVGVLTQSCTTPHL---------------------HSILKATNYNGHTCLHLASIHGYLGIVELLVSLG- 140 (236)
T ss_dssp HHHHHHTCHHHHHHHHHSTTTTSS---------------------SCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHT-
T ss_pred HHHHHcCCHHHHHHHHhcccchhH---------------------HHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC-
Confidence 777777777777777666654210 1123556667777777777777777777777775
Q ss_pred CCccccccCCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCC--CccCCCC
Q psy817 268 ADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVN--ASDCDNR 345 (854)
Q Consensus 268 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~ 345 (854)
++++.++...|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|+++|++.. ..+..|.
T Consensus 141 ~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~ 220 (236)
T 1ikn_D 141 ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDE 220 (236)
T ss_dssp CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTT
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchH
Confidence 77776665456678888877777788888887777777777777888888877778888888877777554 4556666
Q ss_pred cHHHHH
Q psy817 346 TPLHAS 351 (854)
Q Consensus 346 t~L~~a 351 (854)
|+.+.+
T Consensus 221 ~~~~~~ 226 (236)
T 1ikn_D 221 ESYDTE 226 (236)
T ss_dssp TCCCCC
T ss_pred HHHhhh
Confidence 665443
No 44
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=3.8e-30 Score=256.46 Aligned_cols=191 Identities=19% Similarity=0.249 Sum_probs=167.6
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHc
Q psy817 210 HETIVHSAVSTNAVDCVQLLLSLQI-NPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAEN 288 (854)
Q Consensus 210 ~~t~L~~A~~~~~~~~v~~Ll~~g~-~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~ 288 (854)
+.||||.|+..|+.+.++.|++.+. +++..|..|.||||+|+..|+.+++++|++++ ++++..+ ..|.||||+|+..
T Consensus 5 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~-~~g~t~l~~A~~~ 82 (201)
T 3hra_A 5 EVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG-ADINLQN-SISDSPYLYAGAQ 82 (201)
T ss_dssp CTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCC-TTSCCHHHHHHHT
T ss_pred cccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCC-CCCCCHHHHHHHc
Confidence 5677888888888888888887755 88889999999999999999999999999986 8888765 4566999999999
Q ss_pred CCHHHHHHHH-hcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCC-CCCCCccCCCCcHHHHHHhcCCCC---hHHHH
Q psy817 289 GYVECLRILL-ENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKG-SQVNASDCDNRTPLHASLSKNILS---VHPLE 363 (854)
Q Consensus 289 g~~~~v~~Ll-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~a~~~~~~~---~~~v~ 363 (854)
|+.+++++|+ ..+++++..+..|.||||.|+..|+.+++++|+++| ++++..|..|.||||.|+..+... .++++
T Consensus 83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred CCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence 9999999999 556688899999999999999999999999999998 899999999999999999887311 78899
Q ss_pred HHHhCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q psy817 364 ILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHG 402 (854)
Q Consensus 364 ~Ll~~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g 402 (854)
+|+++|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus 163 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 163 LLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 999999999999999999999999999999999999887
No 45
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=7.6e-32 Score=276.22 Aligned_cols=211 Identities=25% Similarity=0.286 Sum_probs=167.0
Q ss_pred CCccHHHHHHhCCCHHHHHHHHhCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Q psy817 182 DSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKA 261 (854)
Q Consensus 182 ~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~ 261 (854)
+|.||||+|+..|+.+++++|++.+.. .|++++..|..|.||||+|+..|+.+++++
T Consensus 7 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~-----------------------~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 63 (236)
T 1ikn_D 7 DGDSFLHLAIIHEEKALTMEVIRQVKG-----------------------DLAFLNFQNNLQQTPLHLAVITNQPEIAEA 63 (236)
T ss_dssp CCCCTTHHHHHTTCSSSSSCCCC----------------------------CCCCCCCCTTCCCHHHHHHHTTCHHHHHC
T ss_pred CCCchhHHHHHcCChhHHHHHHHHhhc-----------------------cHHHhhccCCCCCCHHHHHHHcCCHHHHHH
Confidence 466666666666666666666655442 144677788888888888888888888888
Q ss_pred HHHcCCCCccccccCCcCcHHHHHHHcCCHHHHHHHHhcCCC------cCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCC
Q psy817 262 ILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHAN------CNERNHKEQIPLHLAAKCQSVECMEMLLRKGS 335 (854)
Q Consensus 262 Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 335 (854)
|+++| ++++.++ ..|.||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..|+.+++++|+++|+
T Consensus 64 Ll~~g-~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 141 (236)
T 1ikn_D 64 LLGAG-CDPELRD-FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGA 141 (236)
T ss_dssp CCSCC-CCSCCCC-TTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred HHHcC-CCCCCcC-CCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 88775 7777665 3566888888888888888888887765 46677888999999999999999999999999
Q ss_pred CCCCccC-CCCcHHHHHHhcCCCChHHHHHHHhCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCC
Q psy817 336 QVNASDC-DNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADIS--SKTPSG 412 (854)
Q Consensus 336 ~~~~~~~-~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g 412 (854)
+++..+. .|.||||+|+..+ +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++.. .++..|
T Consensus 142 ~~~~~~~~~g~tpL~~A~~~~--~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~ 219 (236)
T 1ikn_D 142 DVNAQEPCNGRTALHLAVDLQ--NPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESED 219 (236)
T ss_dssp CTTCCCTTTCCCHHHHHHHTT--CHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCT
T ss_pred CCCCCCCCCCCCHHHHHHHcC--CHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccch
Confidence 9988887 8999999999988 7788999999999999999999999999999999999999999999876 667777
Q ss_pred CCHHHHH
Q psy817 413 SSALSII 419 (854)
Q Consensus 413 ~t~l~~a 419 (854)
.|+.+.+
T Consensus 220 ~~~~~~~ 226 (236)
T 1ikn_D 220 EESYDTE 226 (236)
T ss_dssp TTCCCCC
T ss_pred HHHHhhh
Confidence 7776544
No 46
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=1.6e-31 Score=277.43 Aligned_cols=196 Identities=22% Similarity=0.262 Sum_probs=176.5
Q ss_pred CchHHHHHHHcCCHH----HHHHHHHCCCCCCC----CCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCccccc----
Q psy817 210 HETIVHSAVSTNAVD----CVQLLLSLQINPNV----LNNKGVSPLHIAADR---GLISCLKAILDSGMADVDIKT---- 274 (854)
Q Consensus 210 ~~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~----~d~~g~t~L~~A~~~---g~~~iv~~Ll~~~~~~~~~~~---- 274 (854)
|+||||.|+..|+.+ ++++|+++|++++. .|..|.||||+|+.. |+.+++++|++++ ++++...
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g-~~~~~~~~~~~ 80 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQID-KDSGNPKPLVN 80 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHH-HHTTCSSCGGG
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcC-Ccccchhhhcc
Confidence 678888888888886 56777778999998 899999999999999 9999999999986 4444221
Q ss_pred ------cCCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCC-------------CCCHHHHHHhcCCHHHHHHHHh---
Q psy817 275 ------KERRVTALHLAAENGYVECLRILLENHANCNERNHK-------------EQIPLHLAAKCQSVECMEMLLR--- 332 (854)
Q Consensus 275 ------~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-------------g~t~L~~A~~~~~~~~v~~Ll~--- 332 (854)
+..|.||||+|+..|+.+++++|+++|++++.++.. |.||||+|+..|+.+++++|++
T Consensus 81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~ 160 (256)
T 2etb_A 81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH 160 (256)
T ss_dssp CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 245789999999999999999999999999999886 9999999999999999999999
Q ss_pred CCCCCCCccCCCCcHHHHHHhcCCCChH-------HHHHHHhCCCCC-------ccCCCCCCCHHHHHHHcCCHHHHHHH
Q psy817 333 KGSQVNASDCDNRTPLHASLSKNILSVH-------PLEILLKWGANV-------NARDIFGYSPIHIAALSELSQCVDCL 398 (854)
Q Consensus 333 ~g~~~~~~~~~g~t~L~~a~~~~~~~~~-------~v~~Ll~~g~d~-------n~~d~~g~t~L~~A~~~~~~~~v~~L 398 (854)
+|++++..|..|+||||+|+..+..+.+ ++++|+++|+++ +.+|..|.||||+|+..|+.+++++|
T Consensus 161 ~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~L 240 (256)
T 2etb_A 161 QPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240 (256)
T ss_dssp CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred cCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHH
Confidence 9999999999999999999995555777 999999999999 99999999999999999999999999
Q ss_pred HHcCCCcc
Q psy817 399 IMHGADIS 406 (854)
Q Consensus 399 l~~ga~~~ 406 (854)
+++|++..
T Consensus 241 l~~g~~~~ 248 (256)
T 2etb_A 241 LQREFSGA 248 (256)
T ss_dssp HHHHHHHH
T ss_pred HhCCCCCC
Confidence 99997654
No 47
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=8.9e-30 Score=244.54 Aligned_cols=158 Identities=33% Similarity=0.485 Sum_probs=89.8
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHH
Q psy817 246 PLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVE 325 (854)
Q Consensus 246 ~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~ 325 (854)
+|+.|+++|+.++|+.|+++| +++|.++ ..|.||||+|+..|+.++++.|+++|++++.+|..|.||||+|+..|+.+
T Consensus 7 ~L~~Aa~~G~~~~v~~Ll~~G-advn~~d-~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~ 84 (169)
T 4gpm_A 7 RLIEAAENGNKDRVKDLIENG-ADVNASD-SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKE 84 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT-CCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHCC-CCCCCcC-CCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHH
Confidence 344444444444444444443 4444433 23335555555555555555555555555556666666666666666666
Q ss_pred HHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Q psy817 326 CMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADI 405 (854)
Q Consensus 326 ~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~ 405 (854)
++++|+++|+++|.+|.+|+||||+|+..| +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++||++
T Consensus 85 ~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g--~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~i 162 (169)
T 4gpm_A 85 VVKLLISKGADVNAKDSDGRTPLHHAAENG--HKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL 162 (169)
T ss_dssp HHHHHHHTTCCTTCCCTTSCCHHHHHHHTT--CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred HHHHHHHCcCCCCCCCCCCCCHHHHHHHcC--CHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence 666666666666666666666666666666 555666666666666666667777777777777777777777777766
Q ss_pred cc
Q psy817 406 SS 407 (854)
Q Consensus 406 ~~ 407 (854)
+.
T Consensus 163 e~ 164 (169)
T 4gpm_A 163 EH 164 (169)
T ss_dssp --
T ss_pred CC
Confidence 53
No 48
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=9.8e-31 Score=274.36 Aligned_cols=210 Identities=20% Similarity=0.205 Sum_probs=161.5
Q ss_pred CCccHHHHHHhCCCHHHHHHHHhCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCC----CCCCCCCcHHHHHHHc---C
Q psy817 182 DSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPN----VLNNKGVSPLHIAADR---G 254 (854)
Q Consensus 182 ~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~----~~d~~g~t~L~~A~~~---g 254 (854)
.|.||||.|+..|+.++++.|++.+. +.+++++ ..|..|.||||+|+.. |
T Consensus 12 ~g~t~L~~A~~~g~~~~v~~Ll~~~~-----------------------~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g 68 (273)
T 2pnn_A 12 YDRRSIFDAVAQSNCQELESLLPFLQ-----------------------RSKKRLTDSEFKDPETGKTCLLKAMLNLHNG 68 (273)
T ss_dssp CCHHHHHHHHHTTCSSTTTTHHHHHH-----------------------HSCCCTTSGGGSCTTTCCCHHHHHHHSCBTT
T ss_pred ccchHHHHHHHcCCHHHHHHHHHHHh-----------------------hcccccCCcccccCcCCCCHHHHHHHHHhcC
Confidence 35666666666666666555554321 2455554 3577888888888876 8
Q ss_pred CHHHHHHHHHcCCCC-------cccc---ccCCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCC--------------C
Q psy817 255 LISCLKAILDSGMAD-------VDIK---TKERRVTALHLAAENGYVECLRILLENHANCNERNH--------------K 310 (854)
Q Consensus 255 ~~~iv~~Ll~~~~~~-------~~~~---~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~--------------~ 310 (854)
+.+++++|++++ ++ ++.. .+..|.||||+|+..|+.+++++|+++|++++..+. .
T Consensus 69 ~~~~v~~Ll~~g-a~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~ 147 (273)
T 2pnn_A 69 QNDTIALLLDVA-RKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYF 147 (273)
T ss_dssp BCHHHHHHHHHH-HHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCS
T ss_pred ChHHHHHHHHhh-ccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccC
Confidence 888888888875 32 2221 124677999999999999999999999999988887 7
Q ss_pred CCCHHHHHHhcCCHHHHHHHHh---CCCCCCCccCCCCcHHHHHHhcCCCC-------hHHHHHHHhCCCCCc-------
Q psy817 311 EQIPLHLAAKCQSVECMEMLLR---KGSQVNASDCDNRTPLHASLSKNILS-------VHPLEILLKWGANVN------- 373 (854)
Q Consensus 311 g~t~L~~A~~~~~~~~v~~Ll~---~g~~~~~~~~~g~t~L~~a~~~~~~~-------~~~v~~Ll~~g~d~n------- 373 (854)
|.||||+|+..|+.+++++|++ +|++++..|..|+||||+|+..++.. .+++++|+++|+++|
T Consensus 148 g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~ 227 (273)
T 2pnn_A 148 GELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEE 227 (273)
T ss_dssp CBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGG
T ss_pred CCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhccccccccc
Confidence 9999999999999999999999 99999999999999999999988432 688999999999997
Q ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-CccccCCCCCCH
Q psy817 374 ARDIFGYSPIHIAALSELSQCVDCLIMHGA-DISSKTPSGSSA 415 (854)
Q Consensus 374 ~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g~t~ 415 (854)
.+|..|.||||+|+..|+.+++++|+++|+ |+......+.+|
T Consensus 228 ~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~ 270 (273)
T 2pnn_A 228 ITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHH 270 (273)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC------------
T ss_pred ccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhc
Confidence 489999999999999999999999999999 777766666554
No 49
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=2.9e-29 Score=250.09 Aligned_cols=191 Identities=22% Similarity=0.273 Sum_probs=141.4
Q ss_pred CCCccHHHHHHHcCCHHHHHHHHhCCC-CccccC-CCccHHHHHHhCCCHHHHHHHHhCCCCCCchHHHHHHHcCCHHHH
Q psy817 149 NDKYGALHLAAFNGSIKGCSWLMLHGH-DINFTK-DSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCV 226 (854)
Q Consensus 149 ~~g~t~L~~A~~~g~~~iv~~Ll~~g~-~~~~~~-~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~t~L~~A~~~~~~~~v 226 (854)
..+.||||.|+..|+.+.++.|++++. +++..+ +|.||||+|+..|+. +++
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~---------------------------~~v 55 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDI---------------------------EIA 55 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCH---------------------------HHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCH---------------------------HHH
Confidence 357788888888888888888888765 776554 466666666655554 555
Q ss_pred HHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcCCHHHHHHHHhcC-CCcC
Q psy817 227 QLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENH-ANCN 305 (854)
Q Consensus 227 ~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~-~~~~ 305 (854)
++|+++|++++..|..|.||||+|+..|+.+++++|+++++.+++..+. .|.||||+|+..|+.+++++|+++| ++++
T Consensus 56 ~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~ 134 (201)
T 3hra_A 56 KALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNR-YGGNALIPAAEKGHIDNVKLLLEDGREDID 134 (201)
T ss_dssp HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCT-TSCCSHHHHHHTTCHHHHHHHHHHCCCCTT
T ss_pred HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCcC
Confidence 5555556667777777778888888888888888887666667776553 4557888888888888888888777 7777
Q ss_pred CCCCCCCCHHHHHHhcCC-----HHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCC
Q psy817 306 ERNHKEQIPLHLAAKCQS-----VECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWG 369 (854)
Q Consensus 306 ~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g 369 (854)
.+|..|.||||+|+..++ .+++++|+++|++++..|..|.||||.|+..+ +.+++++|+++|
T Consensus 135 ~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~--~~~~~~~Ll~~G 201 (201)
T 3hra_A 135 FQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKG--YTEISKILAQYN 201 (201)
T ss_dssp CCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT--CHHHHHHHHTCC
T ss_pred CCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcC--CHhHHHHHHhcC
Confidence 777778888888877776 77888888888887777777888888888777 667777777765
No 50
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=1.7e-29 Score=242.54 Aligned_cols=159 Identities=32% Similarity=0.465 Sum_probs=143.9
Q ss_pred hHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcCCH
Q psy817 212 TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYV 291 (854)
Q Consensus 212 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~ 291 (854)
++|+.|++.|+.++|+.|+++|+|+|.+|..|.||||+|+..|+.++++.|++++ ++++.++ ..|.||||+|+..|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~g-ad~~~~d-~~g~TpLh~A~~~g~~ 83 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKG-ADVNAKD-SDGRTPLHHAAENGHK 83 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCC-TTSCCHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcc-cchhhhc-cCCCCHHHHHHHcCCH
Confidence 4688899999999999999999999999999999999999999999999999986 8898876 4567999999999999
Q ss_pred HHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCCCC
Q psy817 292 ECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGAN 371 (854)
Q Consensus 292 ~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d 371 (854)
+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..| +.+++++|+++|++
T Consensus 84 ~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g--~~~iv~~Ll~~GA~ 161 (169)
T 4gpm_A 84 EVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHG--NEEVVKLLEKQGGW 161 (169)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT--CHHHHHHHHTC---
T ss_pred HHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC--CHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999 78899999999998
Q ss_pred Ccc
Q psy817 372 VNA 374 (854)
Q Consensus 372 ~n~ 374 (854)
++.
T Consensus 162 ie~ 164 (169)
T 4gpm_A 162 LEH 164 (169)
T ss_dssp ---
T ss_pred cCC
Confidence 865
No 51
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.97 E-value=1.7e-32 Score=297.65 Aligned_cols=267 Identities=13% Similarity=0.092 Sum_probs=201.2
Q ss_pred CCcHHHHHHH-cCCHHHHHHHHHcCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCccc----cCCCccHHHHHHhCCC
Q psy817 121 KTTALLWCVF-VKREDLLDALHQLGADLSNDKYGALHLAAFNGSIKGCSWLMLHGHDINF----TKDSYTPLHFAVLGNY 195 (854)
Q Consensus 121 ~~t~L~~Aa~-~g~~~iv~~Ll~~g~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~----~~~g~t~L~~A~~~~~ 195 (854)
+.+++++|+. .++.+++++++++|++ +.||||+||..|+.++|++|+++|+.... +..|.||||+|+.+|+
T Consensus 65 ~ll~~~~a~~~~~~~~~~~~l~~~g~~----~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~ 140 (376)
T 2aja_A 65 QLLCLYYAHYNRNAKQLWSDAHKKGIK----SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGH 140 (376)
T ss_dssp HHHHHHHHHTTTTCTTHHHHHHHHTCC----HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCCC----cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCC
Confidence 3467888877 4788999999999874 57999999999999999999999983321 2247899999999999
Q ss_pred HHHHHHHHhCCCCC--------CchHHHHHHHcCCHHHHHHHHHCCCCCCC--CCCCCCcHHHHHH-HcCCHHHHHHHHH
Q psy817 196 VDCAKFLIKNKAHI--------HETIVHSAVSTNAVDCVQLLLSLQINPNV--LNNKGVSPLHIAA-DRGLISCLKAILD 264 (854)
Q Consensus 196 ~~iv~~Ll~~~~~~--------~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~d~~g~t~L~~A~-~~g~~~iv~~Ll~ 264 (854)
.+++++|+++|++. +.||||.|+..|+.++|++|+++|++++. .|..|.||||+|+ .+|+.+++++|++
T Consensus 141 ~eiv~~Ll~~gad~~~~~i~~~~~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~ 220 (376)
T 2aja_A 141 LHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLD 220 (376)
T ss_dssp HHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTT
T ss_pred HHHHHHHHhCCCCccccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHh
Confidence 99999999999752 47899999999999999999999999887 8888999999999 9999999999998
Q ss_pred cCCCCccccccCCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHH------------HHHHHh
Q psy817 265 SGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVEC------------MEMLLR 332 (854)
Q Consensus 265 ~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~------------v~~Ll~ 332 (854)
++ + .|.||||.|+.+|+.+++++|+++|++++..+ ++++.|+..|+.++ ++.|+.
T Consensus 221 ~g-a--------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~ 287 (376)
T 2aja_A 221 CP-V--------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIR 287 (376)
T ss_dssp SH-H--------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHH
T ss_pred CC-C--------ccchHHHHHHHCCCHHHHHHHHhcCccccccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHH
Confidence 65 1 25699999999999999999999999887655 37788888888774 345555
Q ss_pred CCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHh---------CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Q psy817 333 KGSQVNASDCDNRTPLHASLSKNILSVHPLEILLK---------WGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGA 403 (854)
Q Consensus 333 ~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~---------~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga 403 (854)
++.. + ..+.+++|++ .|+++| .+.||||+|+..|+.+++++|+++|
T Consensus 288 ~~~~---------~-----------~~~~~~~Ll~~~~vk~l~~~g~~~n----~~~~~L~~A~~~g~~e~v~lLl~~~- 342 (376)
T 2aja_A 288 RNDE---------V-----------LLDDIRFLLSIPGIKALAPTATIPG----DANELLRLALRLGNQGACALLLSIP- 342 (376)
T ss_dssp HCCG---------G-----------GHHHHHHHHTSTTTGGGSSCCSSTT----CCCHHHHHHHHHTCTTHHHHHTTSH-
T ss_pred cchh---------h-----------HHHHHHHHHhChhhhhhhccCCCCC----CccHHHHHHHHcCcHHHHHHHHcCh-
Confidence 4311 1 2344555555 444444 4668999999999999999999876
Q ss_pred CccccCCCCCCHHHHHHhcCCcchHHhh
Q psy817 404 DISSKTPSGSSALSIIMRNTPSSISSVR 431 (854)
Q Consensus 404 ~~~~~~~~g~t~l~~a~~~~~~~~~~~~ 431 (854)
..++..+.|++..|..++..++..+.
T Consensus 343 --~v~~~~~~~~~~~~~~~~~~~~~~~~ 368 (376)
T 2aja_A 343 --SVLALTKANNYYINETGGRLDLRAVA 368 (376)
T ss_dssp --HHHHSCC-------------------
T ss_pred --HHHHHHHHhccccccccccccHHHHH
Confidence 56677899999999988887775543
No 52
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.96 E-value=2.7e-30 Score=270.99 Aligned_cols=103 Identities=18% Similarity=0.232 Sum_probs=47.7
Q ss_pred cCcHHHHHHHcCCHHHHHHHHh---cCCCcCCCCCCCCCHHHHHHhcCC---------HHHHHHHHhCCCCCC-------
Q psy817 278 RVTALHLAAENGYVECLRILLE---NHANCNERNHKEQIPLHLAAKCQS---------VECMEMLLRKGSQVN------- 338 (854)
Q Consensus 278 ~~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~~~~~g~t~L~~A~~~~~---------~~~v~~Ll~~g~~~~------- 338 (854)
|.||||+|+..|+.+++++|++ +|++++.+|..|.||||+|+..|+ .+++++|+++|++++
T Consensus 148 g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~ 227 (273)
T 2pnn_A 148 GELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEE 227 (273)
T ss_dssp CBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGG
T ss_pred CCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhccccccccc
Confidence 4455555555555555555555 555555555555555555555544 455555555555443
Q ss_pred CccCCCCcHHHHHHhcCCCChHHHHHHHhCCC-CCccCCCCCCCH
Q psy817 339 ASDCDNRTPLHASLSKNILSVHPLEILLKWGA-NVNARDIFGYSP 382 (854)
Q Consensus 339 ~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~-d~n~~d~~g~t~ 382 (854)
..|..|.||||+|+..| +.+++++|+++|+ |+......+.+|
T Consensus 228 ~~d~~g~TpL~~A~~~g--~~~iv~~Ll~~ga~dp~~~~~~~~~~ 270 (273)
T 2pnn_A 228 ITNRKGLTPLALAASSG--KIGVLAYILQREIHEPECRHAAAHHH 270 (273)
T ss_dssp CCCTTSCCHHHHHHHTT--CHHHHHHHHHHHTC------------
T ss_pred ccCCCCCCHHHHHHHhC--hHHHHHHHHHCCCCCchhhhhhhhhc
Confidence 24555555555555555 4455555555555 444444444433
No 53
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.96 E-value=3.9e-30 Score=267.07 Aligned_cols=184 Identities=22% Similarity=0.227 Sum_probs=98.0
Q ss_pred CccHHHHHHHcCCHH----HHHHHHhCCCCccc----c-CCCccHHHHHHhC---CCHHHHHHHHhCCCCC---------
Q psy817 151 KYGALHLAAFNGSIK----GCSWLMLHGHDINF----T-KDSYTPLHFAVLG---NYVDCAKFLIKNKAHI--------- 209 (854)
Q Consensus 151 g~t~L~~A~~~g~~~----iv~~Ll~~g~~~~~----~-~~g~t~L~~A~~~---~~~~iv~~Ll~~~~~~--------- 209 (854)
|+||||.|+..|+.+ ++++|+++|++++. . .+|.||||+|+.. |+.+++++|+++|++.
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 81 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA 81 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence 445555555555543 33444444555543 2 2345555555554 5555555555444322
Q ss_pred --------CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-------------CCcHHHHHHHcCCHHHHHHHHHc--C
Q psy817 210 --------HETIVHSAVSTNAVDCVQLLLSLQINPNVLNNK-------------GVSPLHIAADRGLISCLKAILDS--G 266 (854)
Q Consensus 210 --------~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~-------------g~t~L~~A~~~g~~~iv~~Ll~~--~ 266 (854)
|.||||.|+..|+.+++++|+++|++++..|.. |.||||+|+..|+.+++++|+++ .
T Consensus 82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ 161 (256)
T 2etb_A 82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ 161 (256)
T ss_dssp CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence 444555555555555555555555555555544 56666666666666666666652 2
Q ss_pred CCCccccccCCcCcHHHHHHH--cCCHH-------HHHHHHhcCCCc-------CCCCCCCCCHHHHHHhcCCHHHHHHH
Q psy817 267 MADVDIKTKERRVTALHLAAE--NGYVE-------CLRILLENHANC-------NERNHKEQIPLHLAAKCQSVECMEML 330 (854)
Q Consensus 267 ~~~~~~~~~~~~~t~L~~A~~--~g~~~-------~v~~Ll~~~~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~L 330 (854)
+++++.++ ..|.||||+|+. .++.+ ++++|+++|+++ +.+|..|.||||+|+..|+.+++++|
T Consensus 162 ga~~n~~d-~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~L 240 (256)
T 2etb_A 162 PASLEATD-SLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240 (256)
T ss_dssp CCCTTCCC-TTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CCCcCccC-CCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHH
Confidence 25555544 234466666665 55555 666666666655 55566666666666666666666666
Q ss_pred HhCCC
Q psy817 331 LRKGS 335 (854)
Q Consensus 331 l~~g~ 335 (854)
+++|.
T Consensus 241 l~~g~ 245 (256)
T 2etb_A 241 LQREF 245 (256)
T ss_dssp HHHHH
T ss_pred HhCCC
Confidence 65554
No 54
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=1.4e-29 Score=263.44 Aligned_cols=196 Identities=22% Similarity=0.221 Sum_probs=169.3
Q ss_pred CchHHHHHHHcCCHHHHH----HHHHCCCCCCCCC----CCCCcHHHHHH---HcCCHHHHHHHHHcCCCC---------
Q psy817 210 HETIVHSAVSTNAVDCVQ----LLLSLQINPNVLN----NKGVSPLHIAA---DRGLISCLKAILDSGMAD--------- 269 (854)
Q Consensus 210 ~~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~d----~~g~t~L~~A~---~~g~~~iv~~Ll~~~~~~--------- 269 (854)
++++||.|+..|+.+.++ +|++.|++++..+ ..|.||||+|+ ..|+.+++++|++.+ ++
T Consensus 5 ~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g-~~~~~~~~~~~ 83 (260)
T 3jxi_A 5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA-EKTGNMREFIN 83 (260)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH-HHTTCHHHHHT
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc-ccccchHhhhc
Confidence 567777777777777444 4445888888665 77999999999 779999999999976 22
Q ss_pred --ccccccCCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCC--------------CCCCCHHHHHHhcCCHHHHHHHHh-
Q psy817 270 --VDIKTKERRVTALHLAAENGYVECLRILLENHANCNERN--------------HKEQIPLHLAAKCQSVECMEMLLR- 332 (854)
Q Consensus 270 --~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~--------------~~g~t~L~~A~~~~~~~~v~~Ll~- 332 (854)
++.. +..|.||||+|+..|+.++|++|+++|++++..+ ..|.||||+|+..|+.+++++|++
T Consensus 84 ~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~ 162 (260)
T 3jxi_A 84 SPFRDV-YYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTEN 162 (260)
T ss_dssp CCBCCS-SEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred cccccc-ccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 1211 1367799999999999999999999999999998 689999999999999999999999
Q ss_pred --CCCCCCCccCCCCcHHHHHHhcCCCC-------hHHHHHHHhCCCCC-------ccCCCCCCCHHHHHHHcCCHHHHH
Q psy817 333 --KGSQVNASDCDNRTPLHASLSKNILS-------VHPLEILLKWGANV-------NARDIFGYSPIHIAALSELSQCVD 396 (854)
Q Consensus 333 --~g~~~~~~~~~g~t~L~~a~~~~~~~-------~~~v~~Ll~~g~d~-------n~~d~~g~t~L~~A~~~~~~~~v~ 396 (854)
+|++++..|..|+||||+|+..++.. .+++++|+++|+++ +.+|..|.||||+|+..|+.++++
T Consensus 163 ~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~ 242 (260)
T 3jxi_A 163 GHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQ 242 (260)
T ss_dssp SSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred cccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHH
Confidence 99999999999999999999887433 58899999999998 779999999999999999999999
Q ss_pred HHHHcCCCccc
Q psy817 397 CLIMHGADISS 407 (854)
Q Consensus 397 ~Ll~~ga~~~~ 407 (854)
+|+++|++...
T Consensus 243 ~Ll~~g~~~~~ 253 (260)
T 3jxi_A 243 HIIRREIADAA 253 (260)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHhCCCccc
Confidence 99999977544
No 55
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=5e-29 Score=259.31 Aligned_cols=185 Identities=21% Similarity=0.197 Sum_probs=93.6
Q ss_pred CCccHHHHHHHcCCHHHH----HHHHhCCCCcccc-----CCCccHHHHHH---hCCCHHHHHHHHhCCCCC--------
Q psy817 150 DKYGALHLAAFNGSIKGC----SWLMLHGHDINFT-----KDSYTPLHFAV---LGNYVDCAKFLIKNKAHI-------- 209 (854)
Q Consensus 150 ~g~t~L~~A~~~g~~~iv----~~Ll~~g~~~~~~-----~~g~t~L~~A~---~~~~~~iv~~Ll~~~~~~-------- 209 (854)
.|+||||.|+..|+.+.+ ++|+++|++++.. .+|.||||+|+ ..|+.+++++|++.|++.
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 83 (260)
T 3jxi_A 4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN 83 (260)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHT
T ss_pred chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhc
Confidence 345555555555555532 2233355555432 22555555555 445555555555554432
Q ss_pred ---------CchHHHHHHHcCCHHHHHHHHHCCCCCCCCC--------------CCCCcHHHHHHHcCCHHHHHHHHHc-
Q psy817 210 ---------HETIVHSAVSTNAVDCVQLLLSLQINPNVLN--------------NKGVSPLHIAADRGLISCLKAILDS- 265 (854)
Q Consensus 210 ---------~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d--------------~~g~t~L~~A~~~g~~~iv~~Ll~~- 265 (854)
|.||||.|+..|+.++|++|+++|++++..+ ..|.||||+|+..|+.+++++|++.
T Consensus 84 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 163 (260)
T 3jxi_A 84 SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG 163 (260)
T ss_dssp CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 3444444444444555555555555555554 3455555555555555555555552
Q ss_pred -CCCCccccccCCcCcHHHHHHHcCC---------HHHHHHHHhcCCCc-------CCCCCCCCCHHHHHHhcCCHHHHH
Q psy817 266 -GMADVDIKTKERRVTALHLAAENGY---------VECLRILLENHANC-------NERNHKEQIPLHLAAKCQSVECME 328 (854)
Q Consensus 266 -~~~~~~~~~~~~~~t~L~~A~~~g~---------~~~v~~Ll~~~~~~-------~~~~~~g~t~L~~A~~~~~~~~v~ 328 (854)
.+++++.++ ..|.||||+|+..|+ .+++++|+++|+++ +.+|..|.||||+|+..|+.++++
T Consensus 164 ~~ga~~~~~d-~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~ 242 (260)
T 3jxi_A 164 HKQADLRRQD-SRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQ 242 (260)
T ss_dssp SCCCCTTCCC-TTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred ccCCCCcccC-CCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHH
Confidence 125555443 233455555555444 45555555555554 345555555555555555555555
Q ss_pred HHHhCCC
Q psy817 329 MLLRKGS 335 (854)
Q Consensus 329 ~Ll~~g~ 335 (854)
+|+++|.
T Consensus 243 ~Ll~~g~ 249 (260)
T 3jxi_A 243 HIIRREI 249 (260)
T ss_dssp HHHHHHH
T ss_pred HHHHhCC
Confidence 5555544
No 56
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=1.8e-30 Score=281.69 Aligned_cols=242 Identities=14% Similarity=0.079 Sum_probs=179.4
Q ss_pred ccCCcHHHHHHHcCCHHHHHHHHHcCC------CCCCCCccHHHHHHHcCCHHHHHHHHhCCCCc---cccCCCccHHHH
Q psy817 119 AEKTTALLWCVFVKREDLLDALHQLGA------DLSNDKYGALHLAAFNGSIKGCSWLMLHGHDI---NFTKDSYTPLHF 189 (854)
Q Consensus 119 ~~~~t~L~~Aa~~g~~~iv~~Ll~~g~------~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~---~~~~~g~t~L~~ 189 (854)
.++.||||+||..|+.++|++|+++|+ ++|..|.||||+||.+|+.++|++|+++|+|+ +....+.||||+
T Consensus 90 ~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~~TpLh~ 169 (376)
T 2aja_A 90 IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRL 169 (376)
T ss_dssp CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHH
T ss_pred CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCCCCHHHH
Confidence 345699999999999999999999998 55668899999999999999999999999863 333323999999
Q ss_pred HHhCCCHHHHHHHHhCCCCC--------CchHHHHHH-HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHH
Q psy817 190 AVLGNYVDCAKFLIKNKAHI--------HETIVHSAV-STNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLK 260 (854)
Q Consensus 190 A~~~~~~~iv~~Ll~~~~~~--------~~t~L~~A~-~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~ 260 (854)
|+.+|+.+++++|+++|+++ |.||||.|+ .+|+.++|++|+++|++ |.||||.|+.+|+.++++
T Consensus 170 Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~-------~~taL~~Aa~~g~~evv~ 242 (376)
T 2aja_A 170 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM-------LAYAEIHEFEYGEKYVNP 242 (376)
T ss_dssp HHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH-------HHHHHHCTTTTTTTTHHH
T ss_pred HHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc-------cchHHHHHHHCCCHHHHH
Confidence 99999999999999999983 689999999 99999999999998743 889999999999999999
Q ss_pred HHHHcCCCCccccccCCcCcHHHHHHHcCCHHHH------------HHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHH
Q psy817 261 AILDSGMADVDIKTKERRVTALHLAAENGYVECL------------RILLENHANCNERNHKEQIPLHLAAKCQSVECME 328 (854)
Q Consensus 261 ~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v------------~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~ 328 (854)
+|++++ ++++..+ ++++.|+.+|+.+++ +.|+.++. .+..+.++
T Consensus 243 lL~~~g-a~~~~~~-----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~------------------~~~~~~~~ 298 (376)
T 2aja_A 243 FIARHV-NRLKEMH-----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRND------------------EVLLDDIR 298 (376)
T ss_dssp HHHHHH-HHHHHHH-----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCC------------------GGGHHHHH
T ss_pred HHHhcC-ccccccc-----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcch------------------hhHHHHHH
Confidence 999987 5555433 578899999988743 44555431 23356677
Q ss_pred HHHhC---------CCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHH
Q psy817 329 MLLRK---------GSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLI 399 (854)
Q Consensus 329 ~Ll~~---------g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll 399 (854)
+|++. |+++ ..+.||||.|+..| +.+++++|++.| ..++..+.|++.+|-.+|+.++++.-+
T Consensus 299 ~Ll~~~~vk~l~~~g~~~----n~~~~~L~~A~~~g--~~e~v~lLl~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (376)
T 2aja_A 299 FLLSIPGIKALAPTATIP----GDANELLRLALRLG--NQGACALLLSIP---SVLALTKANNYYINETGGRLDLRAVAL 369 (376)
T ss_dssp HHHTSTTTGGGSSCCSST----TCCCHHHHHHHHHT--CTTHHHHHTTSH---HHHHSCC--------------------
T ss_pred HHHhChhhhhhhccCCCC----CCccHHHHHHHHcC--cHHHHHHHHcCh---HHHHHHHHhccccccccccccHHHHHH
Confidence 77763 4443 34668999999999 667799999875 667778999999999999999887655
Q ss_pred H
Q psy817 400 M 400 (854)
Q Consensus 400 ~ 400 (854)
.
T Consensus 370 ~ 370 (376)
T 2aja_A 370 E 370 (376)
T ss_dssp -
T ss_pred H
Confidence 4
No 57
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.95 E-value=4.6e-28 Score=253.86 Aligned_cols=189 Identities=19% Similarity=0.228 Sum_probs=168.6
Q ss_pred chHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHH--
Q psy817 211 ETIVHSAVSTNAVDCVQLLLSLQIN--PNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAA-- 286 (854)
Q Consensus 211 ~t~L~~A~~~~~~~~v~~Ll~~g~~--~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~-- 286 (854)
.+++|.|+..|+.+.++.+++.+.+ +|..|.+|.||||+|+..|+.+++++|++.+..+++..+ ..|.||||+|+
T Consensus 77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~-~~g~tpL~~a~~~ 155 (276)
T 4hbd_A 77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQN-RAGYSPIMLTALA 155 (276)
T ss_dssp STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCC-TTSCCHHHHGGGC
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCC-CCCCCHHHHHHHH
Confidence 3456666677777777777666544 788899999999999999999999999999855888765 45679999999
Q ss_pred ---HcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHH
Q psy817 287 ---ENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLE 363 (854)
Q Consensus 287 ---~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~ 363 (854)
..++.++++.|++.|.+.+..+..|.||||+|+..|+.+++++|+++|+++|..|..|+||||+|+..| +.++++
T Consensus 156 ~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g--~~~iv~ 233 (276)
T 4hbd_A 156 TLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHG--HKEIAG 233 (276)
T ss_dssp CCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT--CHHHHH
T ss_pred HhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCC--CHHHHH
Confidence 668899999999999999999999999999999999999999999999999999999999999999999 788999
Q ss_pred HHHh-CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q psy817 364 ILLK-WGANVNARDIFGYSPIHIAALSELSQCVDCLIMHG 402 (854)
Q Consensus 364 ~Ll~-~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g 402 (854)
+|++ .|++++.+|..|.||||+|+..|+.+++++|++++
T Consensus 234 ~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 234 LLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp HHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 9999 89999999999999999999999999999999875
No 58
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.95 E-value=1.9e-27 Score=230.50 Aligned_cols=170 Identities=25% Similarity=0.295 Sum_probs=145.8
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcC
Q psy817 243 GVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQ 322 (854)
Q Consensus 243 g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~ 322 (854)
+.||||.|+..|+.++++.|++.+...++.++ ..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPD-ERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGG 80 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCC-TTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCC
Confidence 46789999999999999999988754466554 56679999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q psy817 323 SVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHG 402 (854)
Q Consensus 323 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g 402 (854)
+.+++++|+++|++++..|..|.||||.|+..+ +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus 81 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (172)
T 3v30_A 81 YTDIVGLLLERDVDINIYDWNGGTPLLYAVRGN--HVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHI 158 (172)
T ss_dssp CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTT--CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC--CHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence 999999999999999999999999999999998 788899999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCH
Q psy817 403 ADISSKTPSGSSA 415 (854)
Q Consensus 403 a~~~~~~~~g~t~ 415 (854)
+++..++..|.||
T Consensus 159 ~~~~~~~~~~~~p 171 (172)
T 3v30_A 159 LKLFQSNLVPADP 171 (172)
T ss_dssp HHHSCC-------
T ss_pred HHHhcccCCCCCC
Confidence 9998888888776
No 59
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=7.5e-27 Score=230.69 Aligned_cols=163 Identities=21% Similarity=0.274 Sum_probs=145.2
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHH
Q psy817 236 PNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPL 315 (854)
Q Consensus 236 ~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L 315 (854)
+|.+|..|.||||+|+..|+.+++++|++++ ++++..+ ..|.||||+|+..|+.+++++|+++|++++..|..|.|||
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L 105 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENF-DKLEDKD-IEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPL 105 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHH-CCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHH
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhc-ccccccc-ccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Confidence 4667888999999999999999999999886 7777665 3567999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCCCCCccCCCCCCCHHHHHHHcCCHHHH
Q psy817 316 HLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCV 395 (854)
Q Consensus 316 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~~~~~~~v 395 (854)
|+|+..|+.+++++|+++|++++..|..|.||||.|+..+ +.+++++|+++|++++.+|..|.||||+|+..|+.+++
T Consensus 106 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v 183 (192)
T 2rfm_A 106 MWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYG--RSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVI 183 (192)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHT--CHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC--CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHH
Confidence 9999999999999999999999999999999999999998 77889999999999999999999999999999999999
Q ss_pred HHHHHcC
Q psy817 396 DCLIMHG 402 (854)
Q Consensus 396 ~~Ll~~g 402 (854)
++|+++|
T Consensus 184 ~~Ll~~~ 190 (192)
T 2rfm_A 184 KIFTEVR 190 (192)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 9998875
No 60
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.94 E-value=1.2e-26 Score=224.82 Aligned_cols=168 Identities=24% Similarity=0.361 Sum_probs=132.0
Q ss_pred chHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcC
Q psy817 211 ETIVHSAVSTNAVDCVQLLLSLQIN-PNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENG 289 (854)
Q Consensus 211 ~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g 289 (854)
.+|||.|+..|+.+++++|++.|.+ ++..|..|.||||+|+..|+.+++++|++++ ++++..+. .|.||||+|+..|
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~-~g~t~L~~A~~~~ 80 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG-ADPHILAK-ERESALSLASTGG 80 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCT-TCCCHHHHHHHTT
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCchhhcc-cCCCHHHHHHHCC
Confidence 4677777777777777777777666 6777888888888888888888888888876 77776654 4568888888888
Q ss_pred CHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCC
Q psy817 290 YVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWG 369 (854)
Q Consensus 290 ~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g 369 (854)
+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..|..|.||||.|+..+ +.+++++|+++|
T Consensus 81 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~--~~~~~~~L~~~~ 158 (172)
T 3v30_A 81 YTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALG--YRKVQQVIENHI 158 (172)
T ss_dssp CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT--CHHHHHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhC--cHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888888888888888 777888888888
Q ss_pred CCCccCCCCCCCH
Q psy817 370 ANVNARDIFGYSP 382 (854)
Q Consensus 370 ~d~n~~d~~g~t~ 382 (854)
+++...+..|.||
T Consensus 159 ~~~~~~~~~~~~p 171 (172)
T 3v30_A 159 LKLFQSNLVPADP 171 (172)
T ss_dssp HHHSCC-------
T ss_pred HHHhcccCCCCCC
Confidence 8888777777776
No 61
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.94 E-value=2.4e-26 Score=221.50 Aligned_cols=161 Identities=23% Similarity=0.284 Sum_probs=126.7
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhc
Q psy817 242 KGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKC 321 (854)
Q Consensus 242 ~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~ 321 (854)
.|.||||.|+..|+.+++++|++.+ ++++.++ ..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~-~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 79 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQE-NVINHTD-EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSK 79 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHS-SCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcC-CCcCCCC-CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc
Confidence 4667777777777777777777775 6666554 3455778888877888888888888877777788888888888888
Q ss_pred CCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHc
Q psy817 322 QSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMH 401 (854)
Q Consensus 322 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ 401 (854)
|+.+++++|+++|++++..|..|.||||.|+..+ +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++
T Consensus 80 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 157 (167)
T 3v31_A 80 GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGN--HVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 157 (167)
T ss_dssp TCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTT--CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcC--CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHH
Confidence 8888888888888888888888888888888877 67778888888888888888888888888888888888888887
Q ss_pred CCCcc
Q psy817 402 GADIS 406 (854)
Q Consensus 402 ga~~~ 406 (854)
+++..
T Consensus 158 ~~~~~ 162 (167)
T 3v31_A 158 LLKLL 162 (167)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 76543
No 62
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.94 E-value=2e-26 Score=224.81 Aligned_cols=169 Identities=20% Similarity=0.234 Sum_probs=144.6
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHh
Q psy817 241 NKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAK 320 (854)
Q Consensus 241 ~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~ 320 (854)
.++.++|+.|+..|+.++++.|++.++.+++..+ ..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+.
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 81 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGD-DHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAAS 81 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccC-CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 4567888888888888888888888767777665 456689999999999999999999999998888999999999999
Q ss_pred cCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHH
Q psy817 321 CQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIM 400 (854)
Q Consensus 321 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~ 400 (854)
.|+.+++++|+++|++++..|..|.||||.|+..+ +.+++++|+++|++++.+|..|.|||++|+..++.+++++|++
T Consensus 82 ~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~--~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~ 159 (179)
T 3f6q_A 82 HGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWG--QDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEK 159 (179)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT--CHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC--CHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988 7788999999999999999999999999999999999999999
Q ss_pred cCCCccccCCCC
Q psy817 401 HGADISSKTPSG 412 (854)
Q Consensus 401 ~ga~~~~~~~~g 412 (854)
+|++++..+..+
T Consensus 160 ~g~~~~~~~~~~ 171 (179)
T 3f6q_A 160 MGQNLNRIPYKD 171 (179)
T ss_dssp TTCCCSCBCCCC
T ss_pred hhcCcccCCccc
Confidence 999988766544
No 63
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.94 E-value=4.8e-26 Score=219.79 Aligned_cols=156 Identities=35% Similarity=0.453 Sum_probs=93.4
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcC
Q psy817 243 GVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQ 322 (854)
Q Consensus 243 g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~ 322 (854)
+.++|+.|+..|+.+++++|++++ ++++.++ ..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|
T Consensus 14 ~~~~l~~A~~~g~~~~v~~Ll~~g-~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 91 (169)
T 2y1l_E 14 LGKKLLEAARAGRDDEVRILMANG-ADVNAED-ASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFG 91 (169)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTT-CCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred ccchHHHHHHcCCHHHHHHHHHCC-CCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence 344555555555555555555543 4444433 23345555555555555555555555555566666666666666666
Q ss_pred CHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q psy817 323 SVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHG 402 (854)
Q Consensus 323 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g 402 (854)
+.+++++|+++|++++..|..|.||||.|+..+ +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus 92 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 92 HLEIVEVLLKNGADVNANDMEGHTPLHLAAMFG--HLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT--CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC--CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 666666666666666666666666666666666 555666666666666666666667777777777777777776654
No 64
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.94 E-value=2.3e-26 Score=220.39 Aligned_cols=156 Identities=26% Similarity=0.315 Sum_probs=96.6
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCC
Q psy817 244 VSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQS 323 (854)
Q Consensus 244 ~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~ 323 (854)
.||||.|+..|+.+++++|++++ ++++..+ ..|.||||+|+. |+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~-~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 82 (162)
T 1ihb_A 6 GNELASAAARGDLEQLTSLLQNN-VNVNAQN-GFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF 82 (162)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTSC-CCTTCCC-TTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred hhHHHHHHHcCCHHHHHHHHhCC-CCccccC-ccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence 34555555555555555555443 4444433 234455555555 55556666666666666666666666666666666
Q ss_pred HHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q psy817 324 VECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGAN-VNARDIFGYSPIHIAALSELSQCVDCLIMHG 402 (854)
Q Consensus 324 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g 402 (854)
.+++++|+++|++++..|..|.||||.|+..+ +.+++++|+++|++ ++.+|..|.||||+|+..|+.+++++|+++|
T Consensus 83 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 160 (162)
T 1ihb_A 83 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEG--HLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160 (162)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT--CHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC--CHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence 66666666666666666666666666666666 55666666666665 4677777778888888888888888888887
Q ss_pred CC
Q psy817 403 AD 404 (854)
Q Consensus 403 a~ 404 (854)
||
T Consensus 161 Ad 162 (162)
T 1ihb_A 161 AG 162 (162)
T ss_dssp --
T ss_pred CC
Confidence 75
No 65
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.94 E-value=3.5e-29 Score=254.17 Aligned_cols=179 Identities=18% Similarity=0.137 Sum_probs=125.0
Q ss_pred hHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcCCH
Q psy817 212 TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYV 291 (854)
Q Consensus 212 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~ 291 (854)
||||.|+..|+.+++++|+++|+++|..|..|.||||+|+..|+.+++++|++++ ++++.++. .|.||||+|+..|+.
T Consensus 23 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g-a~~n~~d~-~g~tpLh~A~~~g~~ 100 (229)
T 2vge_A 23 VLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAG-ANVNSPDS-HGWTPLHCAASCNDT 100 (229)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCT-TCCCHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCC-CCCCHHHHHHHcCCH
Confidence 4455555555556666666666677777777777777777777777777777765 77776653 556777777777777
Q ss_pred HHHHHHHhcCCCcCCCC-CCCCCHHHHH--HhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhC
Q psy817 292 ECLRILLENHANCNERN-HKEQIPLHLA--AKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKW 368 (854)
Q Consensus 292 ~~v~~Ll~~~~~~~~~~-~~g~t~L~~A--~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~ 368 (854)
+++++|+++|++++..+ ..|.||||+| +..|+.+++++|+++|++++..|..|.|+++.++..+. .++|++.
T Consensus 101 ~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~-----~~~ll~~ 175 (229)
T 2vge_A 101 VICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG-----DELSFRE 175 (229)
T ss_dssp HHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSST-----TBCCBCT
T ss_pred HHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccc-----cccCccc
Confidence 77777777777777765 5777777777 77777777777777777777777777777775444331 2455666
Q ss_pred CCC--CccCCCCCCCHHHHHHHcCCHHHHHH
Q psy817 369 GAN--VNARDIFGYSPIHIAALSELSQCVDC 397 (854)
Q Consensus 369 g~d--~n~~d~~g~t~L~~A~~~~~~~~v~~ 397 (854)
|++ ++.+|..|+||||+|+..|+.++|+.
T Consensus 176 ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~ 206 (229)
T 2vge_A 176 GESVTVLRRDGPEETDWWWAALHGQEGYVPR 206 (229)
T ss_dssp TCEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred cccccccccCCCcccHHHHHHHcCCcceeeh
Confidence 766 56667777777777777777666654
No 66
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.94 E-value=9.4e-26 Score=217.71 Aligned_cols=156 Identities=32% Similarity=0.436 Sum_probs=136.8
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcC
Q psy817 210 HETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENG 289 (854)
Q Consensus 210 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g 289 (854)
+.++++.|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++++ ++++..+ ..|.||||+|+..|
T Consensus 14 ~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~-~~g~t~L~~A~~~~ 91 (169)
T 2y1l_E 14 LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG-ADVNAVD-HAGMTPLRLAALFG 91 (169)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCC-TTSCCHHHHHHHTT
T ss_pred ccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccC-CCCCCHHHHHHHcC
Confidence 467888888888888888888889899989999999999999999999999999886 7787765 45669999999999
Q ss_pred CHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCC
Q psy817 290 YVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWG 369 (854)
Q Consensus 290 ~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g 369 (854)
+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..|..|.||+|.|+..+ +.+++++|++.|
T Consensus 92 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~--~~~~~~~L~~~G 169 (169)
T 2y1l_E 92 HLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNG--NEDLAEILQKLN 169 (169)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT--CHHHHHHHHTC-
T ss_pred CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhC--CHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999999999999989999999999999988 778899988875
No 67
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.94 E-value=5.3e-26 Score=224.58 Aligned_cols=167 Identities=22% Similarity=0.235 Sum_probs=138.0
Q ss_pred HHHHHhCCCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCc
Q psy817 199 AKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERR 278 (854)
Q Consensus 199 v~~Ll~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~ 278 (854)
.+++++.....|.||||.|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++++ ++++..+ ..|
T Consensus 24 ~~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~-~~g 101 (192)
T 2rfm_A 24 LDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKG-SNVNTKD-FSG 101 (192)
T ss_dssp HHHHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCC-TTS
T ss_pred hHHHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCC-CCCCCCC-CCC
Confidence 34455555556778888888888888888888888888888888888888888888888888888886 7777665 356
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCC
Q psy817 279 VTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILS 358 (854)
Q Consensus 279 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~ 358 (854)
.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..|..|.||+|.|+..+ +
T Consensus 102 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~--~ 179 (192)
T 2rfm_A 102 KTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFG--R 179 (192)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTT--C
T ss_pred CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhC--c
Confidence 68888888888888888888888888888888888888888888888888888888888888888888888888888 7
Q ss_pred hHHHHHHHhCC
Q psy817 359 VHPLEILLKWG 369 (854)
Q Consensus 359 ~~~v~~Ll~~g 369 (854)
.+++++|+++|
T Consensus 180 ~~~v~~Ll~~~ 190 (192)
T 2rfm_A 180 QEVIKIFTEVR 190 (192)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcc
Confidence 78888888764
No 68
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.94 E-value=6.7e-26 Score=217.10 Aligned_cols=157 Identities=24% Similarity=0.334 Sum_probs=127.4
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcC
Q psy817 210 HETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENG 289 (854)
Q Consensus 210 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g 289 (854)
..||||.|+..|+.+++++|+++|++++..|..|.||||+|+. |+.+++++|++++ ++++.++ ..|.||||+|+..|
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g-~~~~~~~-~~g~t~L~~A~~~~ 81 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRG-ANPDLKD-RTGFAVIHDAARAG 81 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTT-CCTTCCC-TTSCCHHHHHHHHT
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcC-CCCCCCC-CCCCCHHHHHHHcC
Confidence 4577888888888888888888888888888888888888888 8888888888875 7777665 35568888888888
Q ss_pred CHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCC-CCCccCCCCcHHHHHHhcCCCChHHHHHHHhC
Q psy817 290 YVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQ-VNASDCDNRTPLHASLSKNILSVHPLEILLKW 368 (854)
Q Consensus 290 ~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~ 368 (854)
+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++ ++..+..|.||||.|+..+ +.+++++|+++
T Consensus 82 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~--~~~~~~~Ll~~ 159 (162)
T 1ihb_A 82 FLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG--RNEVVSLMQAN 159 (162)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTT--CHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcC--CHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888887 5788888888888888888 77788888888
Q ss_pred CCC
Q psy817 369 GAN 371 (854)
Q Consensus 369 g~d 371 (854)
|+|
T Consensus 160 GAd 162 (162)
T 1ihb_A 160 GAG 162 (162)
T ss_dssp C--
T ss_pred CCC
Confidence 875
No 69
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.93 E-value=1.2e-25 Score=213.11 Aligned_cols=150 Identities=28% Similarity=0.377 Sum_probs=102.6
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCC
Q psy817 244 VSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQS 323 (854)
Q Consensus 244 ~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~ 323 (854)
.|||+.|+..|+.+++++|++++ ++++ .+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g-~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 79 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANG-APFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH 79 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHT-CCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred cHHHHHHHHcCCHHHHHHHHHcC-CCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCh
Confidence 35666666666666666666665 3433 23445567777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCCCCCccCCCCCCCHHHHHHHcCCHHHHHHH
Q psy817 324 VECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCL 398 (854)
Q Consensus 324 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~L 398 (854)
.+++++|+++|++++..|..|.||||.|+..+ +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|
T Consensus 80 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 80 ANIVEVLLKHGADVNAKDMLKMTALHWATEHN--HQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTT--CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC--CHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 77777777777777777777777777777766 56667777777777777777777777777777777777665
No 70
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.93 E-value=7.1e-26 Score=237.16 Aligned_cols=188 Identities=20% Similarity=0.228 Sum_probs=125.6
Q ss_pred CccHHHHHHHcCCHHHHHHHHhCCCC--ccccC-CCccHHHHHHhCCCHHHHHHHHhCCCCCCchHHHHHHHcCCHHHHH
Q psy817 151 KYGALHLAAFNGSIKGCSWLMLHGHD--INFTK-DSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQ 227 (854)
Q Consensus 151 g~t~L~~A~~~g~~~iv~~Ll~~g~~--~~~~~-~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~t~L~~A~~~~~~~~v~ 227 (854)
+.+++|.|+..|+.+.++.+++.+.+ +|..+ +|.||||+|+..|+.+++++|++
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~----------------------- 132 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLD----------------------- 132 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHH-----------------------
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHH-----------------------
Confidence 34567777777888877777766554 44433 35666666666555555555554
Q ss_pred HHHHCCC-CCCCCCCCCCcHHHHHH-----HcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcCCHHHHHHHHhcC
Q psy817 228 LLLSLQI-NPNVLNNKGVSPLHIAA-----DRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENH 301 (854)
Q Consensus 228 ~Ll~~g~-~~~~~d~~g~t~L~~A~-----~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~ 301 (854)
+|+ +++..|..|.||||+|+ ..++.++++.|++.+ .+.+.. +..|.||||+|+..|+.+++++|+++|
T Consensus 133 ----~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g-~~~~~~-~~~g~tpLh~A~~~g~~~~v~~Ll~~g 206 (276)
T 4hbd_A 133 ----SGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLG-NINAKA-SQAGQTALMLAVSHGRVDVVKALLACE 206 (276)
T ss_dssp ----TSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHS-CTTCCC-TTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred ----CCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcC-CCcccc-CCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 454 56666777777777777 556677777777765 444433 244557777777777777777777777
Q ss_pred CCcCCCCCCCCCHHHHHHhcCCHHHHHHHHh-CCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCC
Q psy817 302 ANCNERNHKEQIPLHLAAKCQSVECMEMLLR-KGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWG 369 (854)
Q Consensus 302 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g 369 (854)
++++.+|..|.||||+|+..|+.+++++|++ .|++++..|..|.||||+|+..| +.+++++|++++
T Consensus 207 ad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g--~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 207 ADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAG--QSEIASMLYSRM 273 (276)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHT--CHHHHHHHHHHC
T ss_pred CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcC--CHHHHHHHHhcc
Confidence 7777777777777777777777777777777 67777777777777777777777 666677777653
No 71
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.93 E-value=3.9e-26 Score=219.47 Aligned_cols=161 Identities=25% Similarity=0.316 Sum_probs=131.0
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHH
Q psy817 239 LNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLA 318 (854)
Q Consensus 239 ~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A 318 (854)
.|.+|.||||.|+..|+.++++.|++.++.+++..+ ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 82 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIE-GRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNA 82 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTT-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccc-cCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHH
Confidence 355677888888888888888888876655555443 3456888888888888888888888888888888888888888
Q ss_pred HhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCCCCCccCCCCCCCHHHHHHHcCCHHHHHHH
Q psy817 319 AKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCL 398 (854)
Q Consensus 319 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~L 398 (854)
+..|+.+++++|+++|++++..|..|.||||.|+..+ +.+++++|+++|++++.+|..|.||||+|+. |+.+++++|
T Consensus 83 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L 159 (165)
T 3twr_A 83 CSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKG--KYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLL 159 (165)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT--CHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHH
T ss_pred HHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcC--CHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHH
Confidence 8888888888888888888888888888888888888 7788888888888888888888888888766 888888888
Q ss_pred HHcCC
Q psy817 399 IMHGA 403 (854)
Q Consensus 399 l~~ga 403 (854)
+++|+
T Consensus 160 ~~~gA 164 (165)
T 3twr_A 160 RGDAA 164 (165)
T ss_dssp HTC--
T ss_pred hhccc
Confidence 88875
No 72
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.93 E-value=2.2e-25 Score=214.63 Aligned_cols=156 Identities=24% Similarity=0.308 Sum_probs=149.6
Q ss_pred CcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCC
Q psy817 277 RRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNI 356 (854)
Q Consensus 277 ~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~ 356 (854)
.|.||||.|+..|+.++++.|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~- 80 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG- 80 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT-
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC-
Confidence 3569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHhCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHhcCCcchHHhhhhc
Q psy817 357 LSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKL 434 (854)
Q Consensus 357 ~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~ 434 (854)
+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..+..++...+...
T Consensus 81 -~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 157 (167)
T 3v31_A 81 -YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH 157 (167)
T ss_dssp -CHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred -CHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999998887766544
No 73
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.93 E-value=1.1e-26 Score=238.04 Aligned_cols=156 Identities=24% Similarity=0.247 Sum_probs=56.9
Q ss_pred CCccHHHHHHHcCCHHHHHHHHhCCCCccccCCCccHHHHHHhCCCHHHHHHHHhCCCCC------CchHHHHHHHcCCH
Q psy817 150 DKYGALHLAAFNGSIKGCSWLMLHGHDINFTKDSYTPLHFAVLGNYVDCAKFLIKNKAHI------HETIVHSAVSTNAV 223 (854)
Q Consensus 150 ~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~------~~t~L~~A~~~~~~ 223 (854)
.|.||||.|+..|+.++++.|+++|++++.+..|.||||.|+..|+.+++++|+++|+++ |.||||.|+..|+.
T Consensus 4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~ 83 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHT 83 (239)
T ss_dssp ---------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCH
T ss_pred cccccCchhhhhhhHHHHHHHhccCCCcccCchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCH
Confidence 455666666666666666666666665554444445555444444444444444333322 22333333333333
Q ss_pred HHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHH--HHcCCHHHHHHHHhcC
Q psy817 224 DCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLA--AENGYVECLRILLENH 301 (854)
Q Consensus 224 ~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A--~~~g~~~~v~~Ll~~~ 301 (854)
+++++|+++|+++|.+|..|.||||+|+..|+.+++++|++++ ++++..+...+.||||+| +..|+.+++++|+++|
T Consensus 84 ~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~ 162 (239)
T 1ycs_B 84 EIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG-AAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ 162 (239)
T ss_dssp HHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhh
Confidence 3444444444445555555555555555555555555555543 455544443334555555 4445555555555555
Q ss_pred CCcCC
Q psy817 302 ANCNE 306 (854)
Q Consensus 302 ~~~~~ 306 (854)
++++.
T Consensus 163 a~~~~ 167 (239)
T 1ycs_B 163 EKMGI 167 (239)
T ss_dssp HHTTT
T ss_pred hcccc
Confidence 44443
No 74
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.93 E-value=2e-25 Score=217.66 Aligned_cols=166 Identities=23% Similarity=0.283 Sum_probs=137.5
Q ss_pred CchHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHc
Q psy817 210 HETIVHSAVSTNAVDCVQLLLSL-QINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAEN 288 (854)
Q Consensus 210 ~~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~ 288 (854)
+.++|+.|+..|+.+++++|++. +.+++..|..|.||||+|+..|+.+++++|++++ ++++..+. .|.||||+|+..
T Consensus 5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~-~g~t~L~~A~~~ 82 (179)
T 3f6q_A 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG-ARINVMNR-GDDTPLHLAASH 82 (179)
T ss_dssp --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCT-TCCCHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCCcCC-CCCCHHHHHHHc
Confidence 45778888888888888888877 6678888888888888888888888888888876 77877653 566888888888
Q ss_pred CCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhC
Q psy817 289 GYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKW 368 (854)
Q Consensus 289 g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~ 368 (854)
|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..|..|.||+|.|+..+ +.+++++|+++
T Consensus 83 ~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~--~~~~~~~L~~~ 160 (179)
T 3f6q_A 83 GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPL--RELLRERAEKM 160 (179)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHH--HHHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHH--HHHHHHHHHHh
Confidence 8888888888888888888888888888888888888888888888888888888888888888877 67778888888
Q ss_pred CCCCccCCCCC
Q psy817 369 GANVNARDIFG 379 (854)
Q Consensus 369 g~d~n~~d~~g 379 (854)
|++++..+..+
T Consensus 161 g~~~~~~~~~~ 171 (179)
T 3f6q_A 161 GQNLNRIPYKD 171 (179)
T ss_dssp TCCCSCBCCCC
T ss_pred hcCcccCCccc
Confidence 88888766543
No 75
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.93 E-value=4.9e-25 Score=208.86 Aligned_cols=149 Identities=32% Similarity=0.448 Sum_probs=143.7
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCCh
Q psy817 280 TALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSV 359 (854)
Q Consensus 280 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~ 359 (854)
|+|+.|+..|+.+++++|+++|++++ .+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..+ +.
T Consensus 4 ~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~--~~ 80 (153)
T 1awc_B 4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEG--HA 80 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHT--CH
T ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC--hH
Confidence 89999999999999999999999886 5889999999999999999999999999999999999999999999999 88
Q ss_pred HHHHHHHhCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHhcCCcchHHhh
Q psy817 360 HPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVR 431 (854)
Q Consensus 360 ~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~~~~~ 431 (854)
+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||+++|+..++.++..++
T Consensus 81 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 81 NIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999998887664
No 76
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.93 E-value=4.4e-25 Score=209.93 Aligned_cols=154 Identities=23% Similarity=0.304 Sum_probs=118.2
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcC
Q psy817 243 GVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQ 322 (854)
Q Consensus 243 g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~ 322 (854)
|.||||.|+..|+.++++.|++..+.+++..+ ..|.||||+ +..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALN-RFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCC-TTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccC-CCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Confidence 34677777777777777777776445666554 345577777 7777777777777777777777778888888888888
Q ss_pred CHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHc
Q psy817 323 SVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMH 401 (854)
Q Consensus 323 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ 401 (854)
+.+++++|+++|++++..|..|.||||.|+..+ +.+++++|+++ ++++.+|..|.||||+|+..|+.+++++|+++
T Consensus 80 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 80 FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEG--HTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHT--CHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred cHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhC--hHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 888888888888888777778888888888877 67778888877 78888888888888888888888888888764
No 77
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.93 E-value=1.3e-27 Score=242.57 Aligned_cols=196 Identities=15% Similarity=0.112 Sum_probs=167.8
Q ss_pred HHHHHHCCCCCCCCC---CCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcCCHHHHHHHHhcCC
Q psy817 226 VQLLLSLQINPNVLN---NKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHA 302 (854)
Q Consensus 226 v~~Ll~~g~~~~~~d---~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~ 302 (854)
++.|+++|++++..+ ..|.||||.|+..|+.+++++|++.+ ++++.++ ..|.||||+|+..|+.+++++|+++|+
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~d-~~g~tpLh~A~~~g~~~~v~~Ll~~ga 78 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEM-NDPSQPN-EEGITALHNAICGANYSIVDFLITAGA 78 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHS-SCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcC-CCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence 467888888887655 45667899999999999999999987 8888875 457799999999999999999999999
Q ss_pred CcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCcc-CCCCcHHHHH--HhcCCCChHHHHHHHhCCCCCccCCCCC
Q psy817 303 NCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASD-CDNRTPLHAS--LSKNILSVHPLEILLKWGANVNARDIFG 379 (854)
Q Consensus 303 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~a--~~~~~~~~~~v~~Ll~~g~d~n~~d~~g 379 (854)
+++.+|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||.| +..+ +.+++++|+++|++++..|..|
T Consensus 79 ~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~--~~~~v~~Ll~~ga~~~~~~~~~ 156 (229)
T 2vge_A 79 NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREG--YADCATYLADVEQSMGLMNSGA 156 (229)
T ss_dssp CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTT--HHHHHHHHHHHHHHTTTSGGGE
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcC--hHHHHHHHHHcCCCcccccCCc
Confidence 999999999999999999999999999999999999986 6999999999 7777 8899999999999999999999
Q ss_pred CCHHHHHHHcCCHHHHHHHHHcCCC--ccccCCCCCCHHHHHHhcCCcchH
Q psy817 380 YSPIHIAALSELSQCVDCLIMHGAD--ISSKTPSGSSALSIIMRNTPSSIS 428 (854)
Q Consensus 380 ~t~L~~A~~~~~~~~v~~Ll~~ga~--~~~~~~~g~t~l~~a~~~~~~~~~ 428 (854)
.||++.++..+. .++|+++|++ ++.+|..|.|||++|+..++.+++
T Consensus 157 ~~~l~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v 204 (229)
T 2vge_A 157 VYALWDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWAALHGQEGYV 204 (229)
T ss_dssp EEESSCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEE
T ss_pred hHHHHHHhhccc---cccCccccccccccccCCCcccHHHHHHHcCCccee
Confidence 999986555443 3678899998 678899999999999999887764
No 78
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.92 E-value=2.5e-26 Score=235.38 Aligned_cols=179 Identities=20% Similarity=0.186 Sum_probs=122.9
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHh
Q psy817 241 NKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAK 320 (854)
Q Consensus 241 ~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~ 320 (854)
..|.||||.|+..|+.++++.|+++| ++++.. ..|.||||.|+..|+.++++.|+++|++++.+|..|.||||+|+.
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g-~~~~~~--~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~ 79 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHG-MRVKFN--PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVC 79 (239)
T ss_dssp -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccC-CCcccC--chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 35788888888888888888888876 677653 456689999999999999999999998988889999999999999
Q ss_pred cCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCCCCCccCCCCCC-CHHHHH--HHcCCHHHHHH
Q psy817 321 CQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGY-SPIHIA--ALSELSQCVDC 397 (854)
Q Consensus 321 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~-t~L~~A--~~~~~~~~v~~ 397 (854)
.|+.+++++|+++|++++..|..|+||||.|+..+ +.+++++|+++|++++..+..|. ||||+| +..|+.+++++
T Consensus 80 ~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~--~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~ 157 (239)
T 1ycs_B 80 AGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN--NVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQF 157 (239)
T ss_dssp HTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTT--CHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHH
T ss_pred cCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC--CHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHH
Confidence 99999999999999999988999999999999888 77889999999999998888777 999988 77888999999
Q ss_pred HHHcCCCcccc---------CCCCCCHHHHHHhcCC
Q psy817 398 LIMHGADISSK---------TPSGSSALSIIMRNTP 424 (854)
Q Consensus 398 Ll~~ga~~~~~---------~~~g~t~l~~a~~~~~ 424 (854)
|+++|++++.. +..+.++.+++.+.+.
T Consensus 158 Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 158 LYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 99999887766 4445666665555443
No 79
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.92 E-value=1.8e-24 Score=207.86 Aligned_cols=156 Identities=26% Similarity=0.336 Sum_probs=101.1
Q ss_pred CchHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHc
Q psy817 210 HETIVHSAVSTNAVDCVQLLLSL-QINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAEN 288 (854)
Q Consensus 210 ~~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~ 288 (854)
+.|+|+.|+..|+.++++.|++. +.+++..+..|.||||+|+..|+.+++++|++++ ++++.++. .|.||||+|+..
T Consensus 8 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~-~g~t~L~~A~~~ 85 (165)
T 3twr_A 8 ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG-ADVHAKDK-GGLVPLHNACSY 85 (165)
T ss_dssp HHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCT-TSCCHHHHHHHT
T ss_pred hhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcC-CCCCccCC-CCCCHHHHHHHc
Confidence 34555666666666666666553 4455666666667777777777777777777664 66665543 455777777777
Q ss_pred CCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhC
Q psy817 289 GYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKW 368 (854)
Q Consensus 289 g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~ 368 (854)
|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..|..|.||+|.|+. + +.+++++|+++
T Consensus 86 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~--~~~i~~~L~~~ 162 (165)
T 3twr_A 86 GHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-G--DTDIQDLLRGD 162 (165)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-T--CHHHHHHHHTC
T ss_pred CcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-C--ChHHHHHHhhc
Confidence 77777777777777777677777777777777777777777777777777777777777776554 4 45667777666
Q ss_pred CC
Q psy817 369 GA 370 (854)
Q Consensus 369 g~ 370 (854)
|+
T Consensus 163 gA 164 (165)
T 3twr_A 163 AA 164 (165)
T ss_dssp --
T ss_pred cc
Confidence 53
No 80
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.92 E-value=5e-24 Score=202.62 Aligned_cols=152 Identities=24% Similarity=0.389 Sum_probs=125.3
Q ss_pred chHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcC
Q psy817 211 ETIVHSAVSTNAVDCVQLLLSL-QINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENG 289 (854)
Q Consensus 211 ~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g 289 (854)
.|+||.|+..|+.+++++|++. +.+++..|..|.||||+ +..|+.+++++|++++ ++++.++ ..|.||||+|+..|
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g-~~~~~~~-~~g~t~L~~A~~~~ 79 (156)
T 1bd8_A 3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQG-ASPNVQD-TSGTSPVHDAARTG 79 (156)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTT-CCTTCCC-TTSCCHHHHHHHTT
T ss_pred chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCC-CCCCCcC-CCCCCHHHHHHHcC
Confidence 5778888888888888888877 45788888888888888 8888888888888875 7777765 45668888888888
Q ss_pred CHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhC
Q psy817 290 YVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKW 368 (854)
Q Consensus 290 ~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~ 368 (854)
+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++ ++++..|..|.||||.|+..+ +.+++++|+++
T Consensus 80 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~--~~~~v~~Ll~~ 155 (156)
T 1bd8_A 80 FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRG--AQDLVDILQGH 155 (156)
T ss_dssp CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSC--CHHHHHHHHTT
T ss_pred cHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcC--cHHHHHHHHhh
Confidence 88888888888888888888888888888888888888888888 888888888888888888888 77778888764
No 81
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.91 E-value=7.2e-25 Score=214.04 Aligned_cols=164 Identities=12% Similarity=0.110 Sum_probs=142.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcCCH----HHHHHHHhcCCCcCCCCCCCCCHHHHH
Q psy817 243 GVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYV----ECLRILLENHANCNERNHKEQIPLHLA 318 (854)
Q Consensus 243 g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~----~~v~~Ll~~~~~~~~~~~~g~t~L~~A 318 (854)
+.++|+.|+..|+.+.++.++..+ ++..++..|.||||+|+.+|+. +++++|+++|++++.+|..|+||||+|
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~---~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a 82 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKG---YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPL 82 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHS---SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcC---cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Confidence 457899999999999999998865 4444445678999999999975 489999999999999999999999999
Q ss_pred HhcCC------HHHHHHHHhCCCCCCCccCCCC-cHHHHHHhcCCC---ChHHHHHHHh-CCCCCccCCCCCCCHHHHHH
Q psy817 319 AKCQS------VECMEMLLRKGSQVNASDCDNR-TPLHASLSKNIL---SVHPLEILLK-WGANVNARDIFGYSPIHIAA 387 (854)
Q Consensus 319 ~~~~~------~~~v~~Ll~~g~~~~~~~~~g~-t~L~~a~~~~~~---~~~~v~~Ll~-~g~d~n~~d~~g~t~L~~A~ 387 (854)
+..|+ .+++++|+++|+++|.+|..|+ ||||+|+..+.. ..+++++|++ +|+|++.+|..|.||||+|+
T Consensus 83 ~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~ 162 (186)
T 3t8k_A 83 FQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVK 162 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHH
Confidence 99887 6889999999999999999999 999999985532 2468999999 99999999999999999999
Q ss_pred HcCCHHHHHHHHHcCCCccccC
Q psy817 388 LSELSQCVDCLIMHGADISSKT 409 (854)
Q Consensus 388 ~~~~~~~v~~Ll~~ga~~~~~~ 409 (854)
..|+.+++++|.++..+.+.++
T Consensus 163 ~~~~~~~v~~L~~~~~~~~~~~ 184 (186)
T 3t8k_A 163 RCQKPIALKMMEDYIKKYNLKE 184 (186)
T ss_dssp TTTCHHHHHHHHHHHHHHTCCC
T ss_pred HcCCHHHHHHHHHHHHHHhccc
Confidence 9999999999998776655554
No 82
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.90 E-value=9e-24 Score=195.65 Aligned_cols=134 Identities=25% Similarity=0.321 Sum_probs=116.8
Q ss_pred CCCccccccCCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCC-CC
Q psy817 267 MADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCD-NR 345 (854)
Q Consensus 267 ~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~-g~ 345 (854)
+++++..+. .|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+. |+.+++++|+++|++++..|.. |.
T Consensus 2 ~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~ 79 (136)
T 1d9s_A 2 SPGIHMLGG-SSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLT 79 (136)
T ss_dssp CCCCSCCCC-CCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTB
T ss_pred CCCccCCCC-CCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCC
Confidence 456666653 55688888888888888888888888888888889999999998 9999999999999999888888 89
Q ss_pred cHHHHHHhcCCCChHHHHHHHhCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q psy817 346 TPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGAD 404 (854)
Q Consensus 346 t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 404 (854)
||||+|+..+ +.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|+|
T Consensus 80 t~L~~A~~~~--~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 80 RPVHDAAREG--FLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp CHHHHHHHHT--CHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred CHHHHHHHcC--CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 9999999988 77889999999999999999999999999999999999999999886
No 83
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.90 E-value=4.8e-24 Score=202.68 Aligned_cols=141 Identities=26% Similarity=0.306 Sum_probs=115.9
Q ss_pred CCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCc-HHHHHHhc
Q psy817 276 ERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRT-PLHASLSK 354 (854)
Q Consensus 276 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~a~~~ 354 (854)
..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+ .|+.+++++|+++|++++..|..|.| |||.|+..
T Consensus 10 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~ 88 (156)
T 1bi7_B 10 EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAARE 88 (156)
T ss_dssp CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHH
T ss_pred ccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHC
Confidence 45679999999999999999999999999999999999999985 89999999999999999999999999 99999999
Q ss_pred CCCChHHHHHHHhCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHH
Q psy817 355 NILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSII 419 (854)
Q Consensus 355 ~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a 419 (854)
+ +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||.+.+
T Consensus 89 ~--~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 89 G--FLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp T--CHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred C--CHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence 9 78889999999999999999999999999999999999999999999999999999887643
No 84
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.88 E-value=3.9e-23 Score=196.32 Aligned_cols=137 Identities=21% Similarity=0.299 Sum_probs=81.2
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCc-HHHHHHHc
Q psy817 210 HETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVT-ALHLAAEN 288 (854)
Q Consensus 210 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t-~L~~A~~~ 288 (854)
|.||||.|+..|+.+++++|+++|++++..|..|.||||+|+ .|+.+++++|++++ ++++.++.. |.| |||+|+..
T Consensus 12 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g-~~~~~~d~~-g~ttpL~~A~~~ 88 (156)
T 1bi7_B 12 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHG-AEPNCADPA-TLTRPVHDAARE 88 (156)
T ss_dssp STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTT-CCCCCCCTT-TCCCHHHHHHHH
T ss_pred chHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcC-CCCCCcCCC-CCcHHHHHHHHC
Confidence 556666666666666666666666666666666777776664 66677777776664 666655533 335 77777777
Q ss_pred CCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHH
Q psy817 289 GYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLH 349 (854)
Q Consensus 289 g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 349 (854)
|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||.+
T Consensus 89 ~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~ 149 (156)
T 1bi7_B 89 GFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149 (156)
T ss_dssp TCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------
T ss_pred CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence 7777777777666666666666677777777667777777776666666666666666655
No 85
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.88 E-value=9.3e-23 Score=188.78 Aligned_cols=134 Identities=19% Similarity=0.244 Sum_probs=108.4
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCC-C
Q psy817 233 QINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHK-E 311 (854)
Q Consensus 233 g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-g 311 (854)
+++++..|..|.||||.|+..|+.+++++|++++ ++++.++ ..|.||||+|+. |+.+++++|+++|++++.+|.. |
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~-~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g 78 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAG-ADPNALN-RFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATL 78 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTT-CCTTCCC-TTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTT
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcC-CCcCCcC-CCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCC
Confidence 4677778888888888888888888888888875 7777665 456688888888 8888888888888888888888 8
Q ss_pred CCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCCCC
Q psy817 312 QIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGAN 371 (854)
Q Consensus 312 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d 371 (854)
.||||+|+..|+.+++++|+++|++++..|..|.||||.|+..+ +.+++++|+++|+|
T Consensus 79 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~--~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 79 TRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQG--HRDIARYLHAATGD 136 (136)
T ss_dssp BCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHT--CHHHHHHHHHHHCC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC--CHHHHHHHHHcCCC
Confidence 88888888888888888888888888888888888888888887 67778888887765
No 86
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.88 E-value=2.9e-23 Score=202.59 Aligned_cols=159 Identities=13% Similarity=0.097 Sum_probs=101.0
Q ss_pred CccHHHHHHHcCCHHHHHHHHhCCCCccccCCCccHHHHHHhCCCHHHHHHHHhCCCCCCchHHHHHHHcCCHHHHHHHH
Q psy817 151 KYGALHLAAFNGSIKGCSWLMLHGHDINFTKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLL 230 (854)
Q Consensus 151 g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~iv~~Ll~~~~~~~~t~L~~A~~~~~~~~v~~Ll 230 (854)
+.++|+.|++.|+.+.++.+++.+.+...+..|.||||+|+.+|+.+. +.+++++|+
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~-----------------------~~~iv~~Ll 62 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEA-----------------------RYKISMFLI 62 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHH-----------------------HHHHHHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcch-----------------------HHHHHHHHH
Confidence 456677777777777777766665432211235556655555543220 235677777
Q ss_pred HCCCCCCCCCCCCCcHHHHHHHcCC------HHHHHHHHHcCCCCccccccCCcC-cHHHHHHHcCC-----HHHHHHHH
Q psy817 231 SLQINPNVLNNKGVSPLHIAADRGL------ISCLKAILDSGMADVDIKTKERRV-TALHLAAENGY-----VECLRILL 298 (854)
Q Consensus 231 ~~g~~~~~~d~~g~t~L~~A~~~g~------~~iv~~Ll~~~~~~~~~~~~~~~~-t~L~~A~~~g~-----~~~v~~Ll 298 (854)
++|+|+|.+|..|+||||+|+..|+ .+++++|+++| +++|.++. .|. ||||+|+..+. .+++++|+
T Consensus 63 ~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~G-adin~~d~-~g~ttpLh~A~~~~~~~~~~~~iv~~Ll 140 (186)
T 3t8k_A 63 NKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKG-ADITALYK-PYKIVVFKNIFNYFVDENEMIPLYKLIF 140 (186)
T ss_dssp HTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTT-CCSSSCBG-GGTBCTTGGGGGCCSCHHHHHHHHHHHH
T ss_pred HCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCC-CCCCccCC-CcCchHHHHHHHcCCChhhHHHHHHHHH
Confidence 7788888888888888888888776 45666666664 66666553 334 66666666332 34666666
Q ss_pred h-cCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCC
Q psy817 299 E-NHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKG 334 (854)
Q Consensus 299 ~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 334 (854)
+ +|++++.+|..|.||||+|+..|+.+++++|.+..
T Consensus 141 ~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~ 177 (186)
T 3t8k_A 141 SQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYI 177 (186)
T ss_dssp TSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred HhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 6 66666666666666666666666666666666543
No 87
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.88 E-value=4.1e-22 Score=181.56 Aligned_cols=125 Identities=40% Similarity=0.614 Sum_probs=116.6
Q ss_pred cCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCC
Q psy817 278 RVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNIL 357 (854)
Q Consensus 278 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~ 357 (854)
|.||||.|+..|+.+++++|+++|++++..+..|.||||.|+..|+.+++++|+++|++++..|..|.||||.|+..+
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-- 79 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG-- 79 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT--
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC--
Confidence 569999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ChHHHHHHHhCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Q psy817 358 SVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGAD 404 (854)
Q Consensus 358 ~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~ 404 (854)
+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+|
T Consensus 80 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 80 HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 78889999999999999999999999999999999999999999986
No 88
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.88 E-value=2.9e-22 Score=185.41 Aligned_cols=125 Identities=33% Similarity=0.393 Sum_probs=117.9
Q ss_pred CCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcC
Q psy817 276 ERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKN 355 (854)
Q Consensus 276 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~ 355 (854)
..+.||||.|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..|..|.||||.|+..+
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~ 91 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG 91 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence 44669999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Q psy817 356 ILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHG 402 (854)
Q Consensus 356 ~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g 402 (854)
+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|
T Consensus 92 --~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 92 --HLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp --CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred --CHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 788999999999999999999999999999999999999999986
No 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.86 E-value=2.1e-21 Score=179.68 Aligned_cols=123 Identities=24% Similarity=0.335 Sum_probs=104.2
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcC
Q psy817 210 HETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENG 289 (854)
Q Consensus 210 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g 289 (854)
+.||||.|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++++ ++++.++. .|.||||+|+..|
T Consensus 14 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~-~g~t~L~~A~~~~ 91 (136)
T 2jab_A 14 LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNG-ADVNAVDA-IGFTPLHLAAFIG 91 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCT-TCCCHHHHHHHHT
T ss_pred ccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcCCC-CCCCHHHHHHHcC
Confidence 567888888888888888888888888888888889999998888888888888875 77877654 5668888888888
Q ss_pred CHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCC
Q psy817 290 YVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKG 334 (854)
Q Consensus 290 ~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 334 (854)
+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus 92 ~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 92 HLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred CHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 888888888888888888888888888888888888888888875
No 90
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.86 E-value=4e-21 Score=174.94 Aligned_cols=125 Identities=37% Similarity=0.598 Sum_probs=96.3
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcC
Q psy817 210 HETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENG 289 (854)
Q Consensus 210 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g 289 (854)
|.||||.|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++++ ++++.++ ..|.||||+|+..|
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~-~~g~t~l~~A~~~~ 79 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKD-KNGRTPLHLAARNG 79 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCC-TTSCCHHHHHHHTT
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcC-CCCcccC-CCCCcHHHHHHHcC
Confidence 567777777777777777777777777777778888888888888888888888765 6666654 34567888888888
Q ss_pred CHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCC
Q psy817 290 YVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQ 336 (854)
Q Consensus 290 ~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 336 (854)
+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|+++|+|
T Consensus 80 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 80 HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 88888888888888777777788888888888888888888877764
No 91
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.84 E-value=2e-22 Score=197.09 Aligned_cols=140 Identities=24% Similarity=0.268 Sum_probs=110.1
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCC-CCCCCHHHHH
Q psy817 240 NNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERN-HKEQIPLHLA 318 (854)
Q Consensus 240 d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A 318 (854)
+..|.||||.|+..|+.++++.|++ +++++.++ ..|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A 117 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE--DRDVDAVD-ENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA 117 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCCC-TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCcC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence 3467778888888888888888887 36777665 356688888888888888888888888887777 7788888888
Q ss_pred HhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCCCCCccCCCCCCCHHHHHHHcCCHHHHHHH
Q psy817 319 AKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCL 398 (854)
Q Consensus 319 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~L 398 (854)
+..|+.+++++|+++|++++..|..|.||||+|+..++. ..+.+||++|+..|+.+++++|
T Consensus 118 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-------------------~~~~~~l~~a~~~~~~~i~~~L 178 (183)
T 3deo_A 118 AGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT-------------------TPKGNPMQFGRRIGLEKVINVL 178 (183)
T ss_dssp HHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-------------------CCCCSHHHHHHHHHHHHHHHHH
T ss_pred HhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-------------------cccccHHHHHHHcCHHHHHHHH
Confidence 888888888888888888888888888888888776521 3467899999999999999988
Q ss_pred HHc
Q psy817 399 IMH 401 (854)
Q Consensus 399 l~~ 401 (854)
.++
T Consensus 179 ~~~ 181 (183)
T 3deo_A 179 EGQ 181 (183)
T ss_dssp HTC
T ss_pred HHh
Confidence 765
No 92
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.84 E-value=1.6e-21 Score=180.70 Aligned_cols=121 Identities=28% Similarity=0.440 Sum_probs=55.7
Q ss_pred cCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCC
Q psy817 278 RVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNIL 357 (854)
Q Consensus 278 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~ 357 (854)
|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..|..|.||||.|+..+
T Consensus 10 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~-- 87 (137)
T 3c5r_A 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNG-- 87 (137)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTT--
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcC--
Confidence 334444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred ChHHHHHHHhCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHH
Q psy817 358 SVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIM 400 (854)
Q Consensus 358 ~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~ 400 (854)
+.+++++|+++|++++.+|..|.||||+|+..+..+++++|.+
T Consensus 88 ~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~ 130 (137)
T 3c5r_A 88 HVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEK 130 (137)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC--
T ss_pred CHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccc
Confidence 3444444444444444444444444444444444444444433
No 93
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.84 E-value=1.9e-22 Score=206.96 Aligned_cols=141 Identities=24% Similarity=0.258 Sum_probs=84.3
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCC-CCCCCHHHHHHhc
Q psy817 243 GVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERN-HKEQIPLHLAAKC 321 (854)
Q Consensus 243 g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~~~ 321 (854)
|.||||.|+..|+.++++.|++ +++++.++ ..|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+..
T Consensus 45 g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~ 121 (244)
T 3ui2_A 45 YETPWWTAARKADEQALSQLLE--DRDVDAVD-ENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY 121 (244)
T ss_dssp HHHHHHHHHTTTCHHHHHHTTT--TCCTTCBC-TTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHT
T ss_pred CCCHHHHHHHcCCHHHHHHHHc--CCCCCCcC-CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHc
Confidence 4444444444444444444444 23444433 233455555555555555555555555555555 4566666666666
Q ss_pred CCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHc
Q psy817 322 QSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMH 401 (854)
Q Consensus 322 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ 401 (854)
|+.+++++|+++|++++..|..|.||||+|+..+.. ..+.||||+|+..|+.+++++|+++
T Consensus 122 g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~-------------------~~~~~~l~~a~~~g~~~iv~~L~~~ 182 (244)
T 3ui2_A 122 VRPEVVEALVELGADIEVEDERGLTALELAREILKT-------------------TPKGNPMQFGRRIGLEKVINVLEGQ 182 (244)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTT-------------------CCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhc-------------------cCCCCHHHHHHHcChHHHHHHHHHh
Confidence 666666666666666666666666666666554321 2467999999999999999999998
Q ss_pred CCCc
Q psy817 402 GADI 405 (854)
Q Consensus 402 ga~~ 405 (854)
+.+.
T Consensus 183 ~~~~ 186 (244)
T 3ui2_A 183 VFEY 186 (244)
T ss_dssp HEEE
T ss_pred cccc
Confidence 6654
No 94
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.84 E-value=3.8e-21 Score=178.18 Aligned_cols=126 Identities=26% Similarity=0.295 Sum_probs=115.9
Q ss_pred CCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCCCCCccCCCCCC
Q psy817 301 HANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGY 380 (854)
Q Consensus 301 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~ 380 (854)
|+|+ .+|..|.||||+|+..|+.+++++|+++|++++..|..|.||||.|+..+ +.+++++|+++|++++.+|..|.
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~--~~~~~~~Ll~~g~~~~~~~~~g~ 77 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHG--HLKVVELLLQHKALVNTTGYQND 77 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTT--CHHHHHHHHHTTCCTTCCCGGGC
T ss_pred CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC--CHHHHHHHHHcCCcccCcCCCCC
Confidence 5677 78899999999999999999999999999999999999999999999999 88999999999999999999999
Q ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHhcCCcchHH
Q psy817 381 SPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISS 429 (854)
Q Consensus 381 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~~~~~~ 429 (854)
||||+|+..|+.+++++|+++|++++.+|..|.||+++|...+..++..
T Consensus 78 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~ 126 (137)
T 3c5r_A 78 SPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLL 126 (137)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHS
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHh
Confidence 9999999999999999999999999999999999999997665554433
No 95
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.83 E-value=3.7e-20 Score=195.54 Aligned_cols=137 Identities=23% Similarity=0.241 Sum_probs=100.7
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCCcCC------CCCCCCCHHHHHHhc---CCHHHHHHHHhCCCCCCCccCCCCcHHHH
Q psy817 280 TALHLAAENGYVECLRILLENHANCNE------RNHKEQIPLHLAAKC---QSVECMEMLLRKGSQVNASDCDNRTPLHA 350 (854)
Q Consensus 280 t~L~~A~~~g~~~~v~~Ll~~~~~~~~------~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 350 (854)
++|+.|+..|+.+.++.|++.|++++. .+..|.||||+|+.. |+.+++++|+++|+++|..|..|+||||+
T Consensus 153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~ 232 (301)
T 2b0o_E 153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY 232 (301)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHH
T ss_pred HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 567777777777777777777777766 577777788877775 77778888887777777777777888888
Q ss_pred HHhcCCCChHHHHHHHhCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHhcCC
Q psy817 351 SLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTP 424 (854)
Q Consensus 351 a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~~~~ 424 (854)
|+..| +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++ .|.|||++|+..+.
T Consensus 233 A~~~g--~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 233 AALYN--QPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVI 298 (301)
T ss_dssp HHHTT--CHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC-------
T ss_pred HHHcC--CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCC
Confidence 87777 66777888888888888887888888888888888888888877765 46778877776554
No 96
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.83 E-value=2.1e-20 Score=182.61 Aligned_cols=138 Identities=21% Similarity=0.263 Sum_probs=117.9
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcC
Q psy817 210 HETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENG 289 (854)
Q Consensus 210 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g 289 (854)
|.||||.|+..|+.++++.|++ |+++|..|..|.||||+|+..|+.+++++|++++ ++++.+++..|.||||+|+..|
T Consensus 44 g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~~g~tpL~~A~~~~ 121 (183)
T 3deo_A 44 YETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAG-ADLDHRDMRGGLTALHMAAGYV 121 (183)
T ss_dssp HHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCSSSSCCHHHHHHHTT
T ss_pred CCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCCHHHHHHhcC
Confidence 5678888888888888888888 8889999999999999999999999999999986 8888887677889999999999
Q ss_pred CHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhC
Q psy817 290 YVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKW 368 (854)
Q Consensus 290 ~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~ 368 (854)
+.+++++|+++|++++.+|..|.||||+|+..++. ..+.++|++|+..| ..+++++|.++
T Consensus 122 ~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~--~~~i~~~L~~~ 181 (183)
T 3deo_A 122 RPEVVEALVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIG--LEKVINVLEGQ 181 (183)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHH--HHHHHHHHHTC
T ss_pred cHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcC--HHHHHHHHHHh
Confidence 99999999999999999999999999999874322 34578999999988 67778888764
No 97
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.83 E-value=1.2e-20 Score=193.43 Aligned_cols=139 Identities=21% Similarity=0.253 Sum_probs=78.7
Q ss_pred CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcC
Q psy817 210 HETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENG 289 (854)
Q Consensus 210 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g 289 (854)
|.||||.|+..|+.++++.|++ |+++|..|..|.||||+|+..|+.+++++|++++ ++++.+++..|.||||+|+..|
T Consensus 45 g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~g~t~L~~A~~~g 122 (244)
T 3ui2_A 45 YETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAG-ADLDHRDMRGGLTALHMAAGYV 122 (244)
T ss_dssp HHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCSSSCCCHHHHHHHTT
T ss_pred CCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCcCCCCCCCCHHHHHHHcC
Confidence 4556666666666666666655 5555555555666666666666666666666554 5555554444556666666666
Q ss_pred CHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCC
Q psy817 290 YVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWG 369 (854)
Q Consensus 290 ~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g 369 (854)
+.+++++|+++|++++.+|..|.||||+|+..++ ...+.||||+|+..| ..+++++|.+++
T Consensus 123 ~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~g--~~~iv~~L~~~~ 183 (244)
T 3ui2_A 123 RPEVVEALVELGADIEVEDERGLTALELAREILK-----------------TTPKGNPMQFGRRIG--LEKVINVLEGQV 183 (244)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHHH--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHcC--hHHHHHHHHHhc
Confidence 6666666666666665556666666665553111 133455666665555 444555555543
No 98
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.82 E-value=8.6e-21 Score=191.80 Aligned_cols=135 Identities=22% Similarity=0.208 Sum_probs=111.6
Q ss_pred CCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhC-CCCCCCccCCCCcHHHHHHhc
Q psy817 276 ERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRK-GSQVNASDCDNRTPLHASLSK 354 (854)
Q Consensus 276 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~a~~~ 354 (854)
..|.||||+|+..|+.++++.|+++|++++.+|..|.||||+|+..|+.+++++|+++ |++++..|..|+||||+|+..
T Consensus 71 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~ 150 (222)
T 3ehr_A 71 ESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWK 150 (222)
T ss_dssp EEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHH
T ss_pred cccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHc
Confidence 3466999999999999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred CCCChHHHHHHHhCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCC
Q psy817 355 NILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSG 412 (854)
Q Consensus 355 ~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g 412 (854)
| +.+++++|+++|++++.+|..|.||||+|+..++.++++.|+++|++...++..|
T Consensus 151 ~--~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 151 G--YADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp T--CHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred C--CHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence 9 7888999999999999999999999999999999999999999999887776554
No 99
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.82 E-value=2.1e-20 Score=169.49 Aligned_cols=107 Identities=26% Similarity=0.392 Sum_probs=71.6
Q ss_pred cCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCC
Q psy817 278 RVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNIL 357 (854)
Q Consensus 278 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~ 357 (854)
|.||||.|+..|+.++++.|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..|..|+||||.|+..+
T Consensus 7 ~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~-- 84 (123)
T 3aaa_C 7 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG-- 84 (123)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHT--
T ss_pred cchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC--
Confidence 346666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred ChHHHHHHHhCCCCCccCCCCCCCHHHHH
Q psy817 358 SVHPLEILLKWGANVNARDIFGYSPIHIA 386 (854)
Q Consensus 358 ~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A 386 (854)
+.+++++|+++|++++.+|..|.||||+|
T Consensus 85 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 85 HVSCVKLLLSKGADKTVKGPDGLTAFEAT 113 (123)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred CHHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence 55666666666666666666666666666
No 100
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.81 E-value=4.2e-20 Score=195.11 Aligned_cols=137 Identities=23% Similarity=0.271 Sum_probs=89.5
Q ss_pred chHHHHHHHcCCHHHHHHHHHCCCCCCC------CCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCccccccCCcCcH
Q psy817 211 ETIVHSAVSTNAVDCVQLLLSLQINPNV------LNNKGVSPLHIAADR---GLISCLKAILDSGMADVDIKTKERRVTA 281 (854)
Q Consensus 211 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------~d~~g~t~L~~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~~~~t~ 281 (854)
.++|+.|+..|+.+.++.|++.|++++. .+..|.||||+|+.. |+.+++++|++++ ++++.++ ..|.||
T Consensus 152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g-advn~~d-~~G~Tp 229 (301)
T 2b0o_E 152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG-GHLDAKA-ADGNTA 229 (301)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHS-SCTTCCC-TTCCCH
T ss_pred HHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcC-CCCCCCC-CCCCCH
Confidence 4567777777777777777777777776 466677777777765 6677777777664 6666654 445577
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcC
Q psy817 282 LHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKN 355 (854)
Q Consensus 282 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~ 355 (854)
||+|+..|+.+++++|+++|++++.+|..|.|||++|+..|+.+++++|+++|++ .|.||||+|+..|
T Consensus 230 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g 297 (301)
T 2b0o_E 230 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWV 297 (301)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcC
Confidence 7777777777777777777777766677777777777777777777777666554 3566666666655
No 101
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.81 E-value=4.5e-20 Score=186.50 Aligned_cols=135 Identities=18% Similarity=0.268 Sum_probs=108.5
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHc
Q psy817 209 IHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAEN 288 (854)
Q Consensus 209 ~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~ 288 (854)
.|.||||.|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++++++++.++ ..|.||||+|+..
T Consensus 72 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d-~~g~tpL~~A~~~ 150 (222)
T 3ehr_A 72 SIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQN-KLGDTALHAAAWK 150 (222)
T ss_dssp EESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCC-TTSCCHHHHHHHH
T ss_pred ccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccC-CCCCCHHHHHHHc
Confidence 368899999999999999999999999999999999999999999999999999998568888876 4566999999999
Q ss_pred CCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCC
Q psy817 289 GYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344 (854)
Q Consensus 289 g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g 344 (854)
|+.+++++|+++|++++.+|..|.|||++|+..|+.++++.|++.|+..+..+..+
T Consensus 151 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 151 GYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp TCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred CCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence 99999999999999999999999999999999999999999999988776555443
No 102
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.81 E-value=1.9e-19 Score=163.15 Aligned_cols=112 Identities=28% Similarity=0.340 Sum_probs=105.5
Q ss_pred CCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCCCCCccCCCCCCCHHHHH
Q psy817 307 RNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIA 386 (854)
Q Consensus 307 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A 386 (854)
.+..|.||||.|+..|+.++++.|+++|++++..|..|+||||.|+..+ +.+++++|+++|++++.+|..|+||||+|
T Consensus 3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A 80 (123)
T 3aaa_C 3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCG--QLEILEFLLLKGADINAPDKHHITPLLSA 80 (123)
T ss_dssp ----CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTT--CHHHHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred cccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCCcCCCCCCCHHHHH
Confidence 3567889999999999999999999999999999999999999999999 78999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Q psy817 387 ALSELSQCVDCLIMHGADISSKTPSGSSALSIIM 420 (854)
Q Consensus 387 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~ 420 (854)
+..|+.+++++|+++|++++.+|..|.||+++|.
T Consensus 81 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~ 114 (123)
T 3aaa_C 81 VYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD 114 (123)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence 9999999999999999999999999999999984
No 103
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.80 E-value=4.7e-19 Score=184.87 Aligned_cols=125 Identities=18% Similarity=0.255 Sum_probs=112.7
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCc------CCCCCCCCCHHHHHHhc---CCHHHHHHHHhCCCCCCCccCCCCcHHH
Q psy817 279 VTALHLAAENGYVECLRILLENHANC------NERNHKEQIPLHLAAKC---QSVECMEMLLRKGSQVNASDCDNRTPLH 349 (854)
Q Consensus 279 ~t~L~~A~~~g~~~~v~~Ll~~~~~~------~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 349 (854)
.++|+.|+..|+.+.++.+++.|+++ +..+..|.||||+|+.. |+.+++++|+++|+++|..|..|+||||
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh 210 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH 210 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHH
Confidence 36888899999999999999888884 44578899999999998 8999999999999999999999999999
Q ss_pred HHHhcCCCChHHHHHHHhCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc
Q psy817 350 ASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADI 405 (854)
Q Consensus 350 ~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~ 405 (854)
+|+..| +.+++++|+++|+|++.+|..|.||||+|+..|+.+++++|+++|++.
T Consensus 211 ~A~~~g--~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 211 YCCLTD--NAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp HHHHTT--CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred HHHHcC--CHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 999999 788899999999999999999999999999999999999999998864
No 104
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.79 E-value=6.5e-19 Score=200.24 Aligned_cols=127 Identities=24% Similarity=0.260 Sum_probs=107.9
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCCcCCC------CCCCCCHHHHHHh---cCCHHHHHHHHhCCCCCCCccCCCCcHHHH
Q psy817 280 TALHLAAENGYVECLRILLENHANCNER------NHKEQIPLHLAAK---CQSVECMEMLLRKGSQVNASDCDNRTPLHA 350 (854)
Q Consensus 280 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~------~~~g~t~L~~A~~---~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 350 (854)
+.||.|+..|+.+.++.|+++|++++.. +..|.||||+|+. .|+.+++++|+++|+++|..|..|+||||+
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~ 213 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY 213 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHH
T ss_pred HHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHH
Confidence 6788888888888888888888888776 7788899999955 888999999999999999888899999999
Q ss_pred HHhcCCCChHHHHHHHhCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc
Q psy817 351 SLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSK 408 (854)
Q Consensus 351 a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~ 408 (854)
|+..| +.+++++|+++|+|+|.+|..|.||||+|+..|+.+++++|+++|++++..
T Consensus 214 A~~~g--~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~ 269 (497)
T 3lvq_E 214 AALYN--QPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAF 269 (497)
T ss_dssp HTTTT--CHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC-----
T ss_pred HHHcC--CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCCC
Confidence 99888 778899999999999999999999999999999999999999999888764
No 105
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.78 E-value=1e-18 Score=188.52 Aligned_cols=142 Identities=25% Similarity=0.297 Sum_probs=117.9
Q ss_pred cCcHHHHHHHc-CCHHHHHHHHhcCCCcCCCC--CCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhc
Q psy817 278 RVTALHLAAEN-GYVECLRILLENHANCNERN--HKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSK 354 (854)
Q Consensus 278 ~~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~ 354 (854)
+.|+||.|+.. |+.++++.|+++|++++..+ ..|.||||+|+..|+.+++++|+++|+++|..|..|+||||+|+..
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~ 278 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATIL 278 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred CCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 34899999999 99999999999999999988 8999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHhCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHcCC---CccccCCCCCCHHHHHHh
Q psy817 355 NILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGA---DISSKTPSGSSALSIIMR 421 (854)
Q Consensus 355 ~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga---~~~~~~~~g~t~l~~a~~ 421 (854)
+ +.+++++|+++|++++..|..|.||||+|+..|+.+++++|++++. +....+..+.|+++.+..
T Consensus 279 g--~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~ 346 (368)
T 3jue_A 279 G--HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRD 346 (368)
T ss_dssp T--CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred C--cHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHH
Confidence 9 7889999999999999999999999999999999999999998763 334455667777776643
No 106
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.78 E-value=8.2e-19 Score=189.31 Aligned_cols=144 Identities=17% Similarity=0.191 Sum_probs=108.7
Q ss_pred CchHHHHHHHc-CCHHHHHHHHHCCCCCCCCC--CCCCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHH
Q psy817 210 HETIVHSAVST-NAVDCVQLLLSLQINPNVLN--NKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAA 286 (854)
Q Consensus 210 ~~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~d--~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~ 286 (854)
+.|+||.|+.. |+.++++.|+++|+++|..+ ..|.||||+|+..|+.+++++|++++ ++++..+ ..|.||||+|+
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~G-advn~~d-~~G~TpLh~A~ 276 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNG-ANVNQAD-SAGRGPLHHAT 276 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCC-TTSCCHHHHHH
T ss_pred CCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCCC-CCCCCHHHHHH
Confidence 46788888888 89999999999999999888 78999999999999999999999886 8888765 45679999999
Q ss_pred HcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCC---CCCCccCCCCcHHHHHHhcC
Q psy817 287 ENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGS---QVNASDCDNRTPLHASLSKN 355 (854)
Q Consensus 287 ~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~---~~~~~~~~g~t~L~~a~~~~ 355 (854)
..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|++.+. +....+..+.|+++.+....
T Consensus 277 ~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 277 ILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred HcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987653 33344555667776655443
No 107
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.77 E-value=4.4e-18 Score=177.47 Aligned_cols=123 Identities=21% Similarity=0.301 Sum_probs=102.0
Q ss_pred hHHHHHHHcCCHHHHHHHHHCCCCC------CCCCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCCccccccCCcCcHH
Q psy817 212 TIVHSAVSTNAVDCVQLLLSLQINP------NVLNNKGVSPLHIAADR---GLISCLKAILDSGMADVDIKTKERRVTAL 282 (854)
Q Consensus 212 t~L~~A~~~~~~~~v~~Ll~~g~~~------~~~d~~g~t~L~~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L 282 (854)
++|+.|+..|+.+.++.+++.|+++ +..|..|.||||+|+.. |+.+++++|+++| +++|.++. .|.|||
T Consensus 132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~g-a~in~~d~-~g~TpL 209 (278)
T 1dcq_A 132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS-GNLDKQTG-KGSTAL 209 (278)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC-SCTTCCCT-TCCCHH
T ss_pred hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCC-CCccccCC-CCCCHH
Confidence 5788888888888888888888874 44477888888888888 8888888888886 88887654 566888
Q ss_pred HHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCC
Q psy817 283 HLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQ 336 (854)
Q Consensus 283 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 336 (854)
|+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 210 h~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 210 HYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 888888888888888888888888888888888888888888888888888774
No 108
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.77 E-value=2.3e-18 Score=147.29 Aligned_cols=93 Identities=39% Similarity=0.597 Sum_probs=69.9
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCCCCCccCCCCCCCHHHHHHHc
Q psy817 310 KEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALS 389 (854)
Q Consensus 310 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~A~~~ 389 (854)
+|+||||+|+..|+.+++++|+++|++++..|..|+||||.|+..+ +.+++++|+++|++++.+|..|.||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~--~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~ 78 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG--HLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 78 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT--CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC--CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence 3667777777777777777777777777777777777777777777 66777777777777777777888888888888
Q ss_pred CCHHHHHHHHHcCCC
Q psy817 390 ELSQCVDCLIMHGAD 404 (854)
Q Consensus 390 ~~~~~v~~Ll~~ga~ 404 (854)
|+.+++++|+++|++
T Consensus 79 ~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 79 GHLEVVKLLLEAGAY 93 (93)
T ss_dssp TCHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHcCCC
Confidence 888888888888764
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.75 E-value=5.2e-18 Score=192.82 Aligned_cols=135 Identities=24% Similarity=0.301 Sum_probs=114.0
Q ss_pred chHHHHHHHcCCHHHHHHHHHCCCCCCCC------CCCCCcHHHHHHH---cCCHHHHHHHHHcCCCCccccccCCcCcH
Q psy817 211 ETIVHSAVSTNAVDCVQLLLSLQINPNVL------NNKGVSPLHIAAD---RGLISCLKAILDSGMADVDIKTKERRVTA 281 (854)
Q Consensus 211 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~------d~~g~t~L~~A~~---~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~ 281 (854)
.+.||.|+..|+.+.|+.|+++|+++|.. |..|.||||+|+. .|+.+++++|+++| +++|.++. .|.||
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~g-a~vn~~d~-~g~Tp 210 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG-GHLDAKAA-DGNTA 210 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHS-CCTTCCCS-SSCCH
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcC-CCCCccCC-CCCcH
Confidence 46799999999999999999999999877 8899999999966 89999999999987 89998764 57799
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHh
Q psy817 282 LHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLS 353 (854)
Q Consensus 282 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~ 353 (854)
||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++. +|+|.+..
T Consensus 211 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~------~~~h~~~~ 276 (497)
T 3lvq_E 211 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFA------FPLHVDYS 276 (497)
T ss_dssp HHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC------------------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC------Ccceeecc
Confidence 9999999999999999999999999999999999999999999999999999999875 56666554
No 110
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.75 E-value=2.5e-18 Score=153.67 Aligned_cols=108 Identities=34% Similarity=0.428 Sum_probs=74.9
Q ss_pred CCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCCCCCccCCCCCCCHHHH
Q psy817 306 ERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHI 385 (854)
Q Consensus 306 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~ 385 (854)
.+|..|.||||+|+..|+.+++++|+++|++++..|..|.||||.|+..+ +.+++++|+++|++++.+|..|.||||+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~--~~~~~~~Ll~~g~~~~~~d~~g~tpl~~ 81 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNG--HAEIVKLLLAKGADVNARSKDGNTPEHL 81 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTT--CHHHHHHHTTTTCCTTCCCTTCCCTTHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC--cHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence 34566667777777777777777777776666666666777777777666 5666777777777777777777777777
Q ss_pred HHHcCCHHHHHHHHHcCCCccccCCCCCCH
Q psy817 386 AALSELSQCVDCLIMHGADISSKTPSGSSA 415 (854)
Q Consensus 386 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~ 415 (854)
|+..|+.+++++|+++|++++.++..|.+|
T Consensus 82 A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp HHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred HHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence 777777777777777777777777776665
No 111
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.74 E-value=1e-17 Score=143.29 Aligned_cols=91 Identities=42% Similarity=0.711 Sum_probs=44.4
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCccccccCCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcC
Q psy817 243 GVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQ 322 (854)
Q Consensus 243 g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~ 322 (854)
|.||||+|+..|+.+++++|++++ ++++.++ ..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g-~~~n~~d-~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~ 79 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAG-ADVNAKD-KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 79 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTT-CCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcC-CCCcccC-CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence 445555555555555555555443 4444433 23335555555555555555555555555555555555555555555
Q ss_pred CHHHHHHHHhCCC
Q psy817 323 SVECMEMLLRKGS 335 (854)
Q Consensus 323 ~~~~v~~Ll~~g~ 335 (854)
+.+++++|+++|+
T Consensus 80 ~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 80 HLEVVKLLLEAGA 92 (93)
T ss_dssp CHHHHHHHHHTTC
T ss_pred CHHHHHHHHHcCC
Confidence 5555555555443
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.72 E-value=1.2e-17 Score=149.18 Aligned_cols=105 Identities=37% Similarity=0.444 Sum_probs=65.7
Q ss_pred CCcCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcC
Q psy817 276 ERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKN 355 (854)
Q Consensus 276 ~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~ 355 (854)
..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..|..|.||||.|+..+
T Consensus 7 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~ 86 (115)
T 2l6b_A 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNG 86 (115)
T ss_dssp CSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTT
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCC
Confidence 34456666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCChHHHHHHHhCCCCCccCCCCCCCH
Q psy817 356 ILSVHPLEILLKWGANVNARDIFGYSP 382 (854)
Q Consensus 356 ~~~~~~v~~Ll~~g~d~n~~d~~g~t~ 382 (854)
+.+++++|+++|+++|.++..|.||
T Consensus 87 --~~~~~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 87 --HHEIVKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp --CHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred --CHHHHHHHHHcCCCCCcCCcccccc
Confidence 5556666666666666666666555
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.59 E-value=3.3e-15 Score=131.93 Aligned_cols=91 Identities=25% Similarity=0.352 Sum_probs=53.9
Q ss_pred CCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCCChHHHHHHHhCCCCCccCCCCCCCHHHH
Q psy817 306 ERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHI 385 (854)
Q Consensus 306 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~~~~~v~~Ll~~g~d~n~~d~~g~t~L~~ 385 (854)
..+.+|.||||.|+..|+.+++++|+++|++++..|..|.||||.|+..+ +.+++++|+++|++++.+|..|.||||+
T Consensus 19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~--~~~~v~~Ll~~ga~~~~~d~~g~tpl~~ 96 (110)
T 2zgd_A 19 HMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNG--HLEVVKLLLEAGADVXAQDKFGKTAFDI 96 (110)
T ss_dssp ---CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT--CHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred ccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC--CHHHHHHHHHcCCCccccccCCCcHHHH
Confidence 34445555666666666666666666666665555556666666666655 5555666666666666666666666666
Q ss_pred HHHcCCHHHHHHH
Q psy817 386 AALSELSQCVDCL 398 (854)
Q Consensus 386 A~~~~~~~~v~~L 398 (854)
|+..|+.+++++|
T Consensus 97 A~~~~~~~~~~~L 109 (110)
T 2zgd_A 97 SIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHTCHHHHHHH
T ss_pred HHHcCCHHHHHHh
Confidence 6666666666654
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.55 E-value=1.5e-14 Score=127.74 Aligned_cols=85 Identities=31% Similarity=0.408 Sum_probs=42.9
Q ss_pred cCcHHHHHHHcCCHHHHHHHHhcCCCcCCCCCCCCCHHHHHHhcCCHHHHHHHHhCCCCCCCccCCCCcHHHHHHhcCCC
Q psy817 278 RVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNIL 357 (854)
Q Consensus 278 ~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~a~~~~~~ 357 (854)
|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..|..|.||||.|+..+
T Consensus 24 g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~-- 101 (110)
T 2zgd_A 24 LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNG-- 101 (110)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT--
T ss_pred cchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHcC--
Confidence 335555555555555555555555555555555555555555555555555555555555555555555555555554
Q ss_pred ChHHHHH
Q psy817 358 SVHPLEI 364 (854)
Q Consensus 358 ~~~~v~~ 364 (854)
+.+++++
T Consensus 102 ~~~~~~~ 108 (110)
T 2zgd_A 102 NEDLAEI 108 (110)
T ss_dssp CHHHHHH
T ss_pred CHHHHHH
Confidence 3444443
No 115
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=99.40 E-value=1.5e-12 Score=131.09 Aligned_cols=184 Identities=15% Similarity=0.215 Sum_probs=130.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHHHHHHHHHHhccCcccchhhhHHHHHHHHHHHHHH
Q psy817 560 FMETVWYVLALLATIELIRKIFGLVEYASFREYCSHVTNLFEWYMIISVFLISCVYTKRTYIWQNHVGAVAVLLGWSNLM 639 (854)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~y~~~~wN~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~ll 639 (854)
..+...++..+....+.+.+++.. +++++|+++.||++|+++++..++... ......+.-++..+|++
T Consensus 43 ~l~~~e~~~~~iF~~E~~lri~~~---~~~~~y~~~~wni~D~~~v~~~~i~~~---------~~~~~~~lr~~RilR~l 110 (229)
T 4dxw_A 43 TIHLLDYGITIFFVIEILIRFIGE---KQKADFFKSGWNIFDTVIVAISLIPIP---------NNSSFLVLRLLRIFRVL 110 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHTTCC-----------------CCTTHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc---CchhHHhcCCcHHHHHHHHHHHHhhcC---------ccHHHHHHHHHHHHHHH
Confidence 445566666666777777666542 456899999999999976654332110 00111122456677888
Q ss_pred HHHcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--ccCChHHHHHHHHHHHhcCcchhhhhccC
Q psy817 640 GMIGQLPSVGTYVAMFSRVQLEFLKLFQAYICLLVGFTLTFCIVFPSED--RFQNPIIGFINILVMMTGELNVNEVLLGT 717 (854)
Q Consensus 640 ~~~~~~~~~G~~v~m~~~~~~d~~~f~~i~~~~l~aF~~~f~~l~~~~~--~f~~~~~s~~~~~~~~~G~~~~~~~~~~~ 717 (854)
+++|..+.+..+...+.+....+..++++++++++.||+..+.+|++.+ .|+++..|+.++|..++||--.+ +..+.
T Consensus 111 rl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa~~g~~lf~~~~~~~F~~~~~a~~~lf~~~t~~~w~~-i~~~~ 189 (229)
T 4dxw_A 111 RLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYATMGAILFGNDDPSRWGDLGISLITLFQVLTLSSWET-VMLPM 189 (229)
T ss_dssp THHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCTTTSSHHHHHHHHHHHHTTSSTHH-HHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccCHHHHHHHHHHHHccCCHHH-HHHHH
Confidence 8888888888999999999999999999999999999999999998754 59999999999999999984322 22211
Q ss_pred CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q psy817 718 EAKPPVLLKGTAHIVFTIFMLFVTVVLMNLLVGIAVQDIQGLHK 761 (854)
Q Consensus 718 ~~~~~~~~~~~~~ilf~~f~~~~~ivLlNlLIA~~~~~~~~v~~ 761 (854)
-.. ..++.+.|++|.++...+++||.||++.++|++.++
T Consensus 190 ~~~-----~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~~~~~ 228 (229)
T 4dxw_A 190 QEI-----YWWSWVYFFSFIIICSITILNLVIAILVDVVIQKKL 228 (229)
T ss_dssp HTT-----CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHh-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111 135789999999999999999999999999998654
No 116
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=99.37 E-value=4.2e-12 Score=132.44 Aligned_cols=186 Identities=17% Similarity=0.231 Sum_probs=134.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHHHHHHHHHHhccCcccchhhhHHHHHHHHHHHHHH
Q psy817 560 FMETVWYVLALLATIELIRKIFGLVEYASFREYCSHVTNLFEWYMIISVFLISCVYTKRTYIWQNHVGAVAVLLGWSNLM 639 (854)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~y~~~~wN~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~ll 639 (854)
+.....++.+++..++.+.+++.. + ++|+++.||++|+++++..++.. .. ...+..++..+|++
T Consensus 62 ~l~~~e~~~~~iF~~E~~lrl~~~----~-~~y~~~~wn~~Dl~~v~~~~i~~----~~-------~~~~lr~~RilR~l 125 (285)
T 3rvy_A 62 YTTLFNQIVITIFTIEIILRIYVH----R-ISFFKDPWSLFDFFVVAISLVPT----SS-------GFEILRVLRVLRLF 125 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT----G-GGGGGCHHHHHHHHHHHHHHSCS----SS-------SCTHHHHHGGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----h-HHHHcCChHHhHHHHHHHHHHcc----cc-------hHHHHHHHHHHHHH
Confidence 455566666666777777776543 2 78999999999998765544321 00 12345677788888
Q ss_pred HHHcccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--ccCChHHHHHHHHHHHhcCcchhhhhccC
Q psy817 640 GMIGQLPSVGTYVAMFSRVQLEFLKLFQAYICLLVGFTLTFCIVFPSED--RFQNPIIGFINILVMMTGELNVNEVLLGT 717 (854)
Q Consensus 640 ~~~~~~~~~G~~v~m~~~~~~d~~~f~~i~~~~l~aF~~~f~~l~~~~~--~f~~~~~s~~~~~~~~~G~~~~~~~~~~~ 717 (854)
.+++.++.+..++..+.+...++..++++++++++.||+..+.+|++.. .|+++..|+..+|.+++|+---.++...
T Consensus 126 rl~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~fa~~g~~~f~~~~~~~F~s~~~a~~~~~~~~T~~g~~~di~~p- 204 (285)
T 3rvy_A 126 RLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQLFGERFPEWFGTLGESFYTLFQVMTLESWSMGIVRP- 204 (285)
T ss_dssp HHHHSSTTHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTTTCCCCCHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccccCCHHHHHHHHHHHHHhCCCcHHHHHH-
Confidence 8899999999999999999999999999999999999999999997654 3999999999999999987322011101
Q ss_pred CCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhhHH
Q psy817 718 EAKPPVLLKGTAHIVFTIFMLFVTVVLMNLLVGIAVQDIQGLHKTAGLD 766 (854)
Q Consensus 718 ~~~~~~~~~~~~~ilf~~f~~~~~ivLlNlLIA~~~~~~~~v~~~a~~~ 766 (854)
......++.++|++|++++.++++||.+|++++.|++..++.+.+
T Consensus 205 ----~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~~~~~~ 249 (285)
T 3rvy_A 205 ----LMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQKEEQH 249 (285)
T ss_dssp ----HHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred ----HHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000113577999999999999999999999999999987765443
No 117
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=98.74 E-value=1.1e-07 Score=106.48 Aligned_cols=187 Identities=12% Similarity=0.112 Sum_probs=114.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHHHHHHHHHHhccCcccchhhhHHHHHHHHHHHHHH
Q psy817 560 FMETVWYVLALLATIELIRKIFGLVEYASFREYCSHVTNLFEWYMIISVFLISCVYTKRTYIWQNHVGAVAVLLGWSNLM 639 (854)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~y~~~~wN~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~ll 639 (854)
+..++.++..+++.++.+.+++.. ...+.|+++.||++|+++++..++......... . ...+..+..++..+|++
T Consensus 240 ~l~~ie~i~~~iFtiE~ilR~~~~---~~k~~Y~ks~wniiDli~iip~~i~l~~~~~~~-~-~~~~~~~~~~lrvlRll 314 (514)
T 2r9r_B 240 PFFIVETLCIIWFSFEFLVRFFAC---PSKAGFFTNIMNIIDIVAIIPYYVTIFLTESNK-S-VLQFQNVRRVVQIFRIM 314 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS---SCSSSSTTSHHHHHHHHTTHHHHHHHHHHHTSC-S-HHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC---CcHHHHHhchhHHHHHHHHHHHHHHHHhhhccc-c-chhhhhHHHHHHHHHHH
Confidence 445566677777777777776642 335689999999999988766554332211100 0 00011112233334444
Q ss_pred HHHcccCcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCccCChHHHHHHHHHHHhcCcchh
Q psy817 640 GMIGQLPSV------GTYVAMFSRVQLEFLKLFQAYICLLVGFTLTFCIVFPS--EDRFQNPIIGFINILVMMTGELNVN 711 (854)
Q Consensus 640 ~~~~~~~~~------G~~v~m~~~~~~d~~~f~~i~~~~l~aF~~~f~~l~~~--~~~f~~~~~s~~~~~~~~~G~~~~~ 711 (854)
.++|.++.+ -.+...+.+.+..+..++++.+++++-||..+|...+. ...|.++..+++..+..+++ +.|+
T Consensus 315 RvlRilkL~r~~~~l~~l~~tl~~s~~~l~~ll~~l~i~~~if~~~~~~~e~~~~~~~F~s~~~a~y~~~vT~TT-vGYG 393 (514)
T 2r9r_B 315 RILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSMTT-VGYG 393 (514)
T ss_dssp GGGGGGGGGGSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCSCSSHHHHHHHHHHHHTT-CCCS
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeccCCCccccchhhhhheeeeEEEe-cccC
Confidence 444444322 22333344444555555555566677788877766543 45699999999988888775 3333
Q ss_pred hhhccCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhh
Q psy817 712 EVLLGTEAKPPVLLKGTAHIVFTIFMLFVTVVLMNLLVGIAVQDIQGLHKT 762 (854)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~ilf~~f~~~~~ivLlNlLIA~~~~~~~~v~~~ 762 (854)
++ .|. ...+. +|+++.+++.++++|+.||++++.|++..++
T Consensus 394 Di-------~P~--t~~gr-~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~ 434 (514)
T 2r9r_B 394 DM-------VPT--TIGGK-IVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 434 (514)
T ss_dssp SS-------CCC--SHHHH-HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred CC-------CCC--CcchH-hhehhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 111 13444 5788888899999999999999999988764
No 118
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=98.68 E-value=2.3e-08 Score=86.70 Aligned_cols=101 Identities=14% Similarity=0.146 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCc--cCChHHHHHHHHHHHhcCcchhhhhccCCCCCccccchhHHHHHHHHHHH
Q psy817 662 FLKLFQAYICLLVGFTLTFCIVFPSEDR--FQNPIIGFINILVMMTGELNVNEVLLGTEAKPPVLLKGTAHIVFTIFMLF 739 (854)
Q Consensus 662 ~~~f~~i~~~~l~aF~~~f~~l~~~~~~--f~~~~~s~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ilf~~f~~~ 739 (854)
+...++++++++.-||+....+|++.++ |+++..|+.++|.+++||--.+.+..... ...+.+.+.|++|+++
T Consensus 6 ~~nv~~ll~l~~~ifAi~G~~lFg~~~~~~F~~~~~s~ltLF~i~T~e~W~~~~~~~~~-----~~~~~a~iyFi~fi~i 80 (112)
T 4f4l_A 6 VGSVAALLTVVFYIAAVMATNLYGATFPEWFGDLSKSLYTLFQVMTLESWSMGIVRPVM-----NVHPNAWVFFIPFIML 80 (112)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHT-----TTSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCccccccCHHHHHHHHHHHHHccccHHHHHHHHH-----hcCcHHHHHHHHHHHH
Confidence 4445667777888899999999987653 99999999999999999842221211111 1123578999999999
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhhhhHHH
Q psy817 740 VTVVLMNLLVGIAVQDIQGLHKTAGLDK 767 (854)
Q Consensus 740 ~~ivLlNlLIA~~~~~~~~v~~~a~~~~ 767 (854)
.+.+++||+||++.++|++.+++.+.++
T Consensus 81 ~~fi~lNLfiaVi~~~f~~~~~~~~~~~ 108 (112)
T 4f4l_A 81 TTFTVLNLFIGIIVDAMAITKEQEEEAK 108 (112)
T ss_dssp HHHHHHHHHTTTC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887765443
No 119
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=98.18 E-value=4.2e-05 Score=82.09 Aligned_cols=151 Identities=7% Similarity=-0.017 Sum_probs=101.3
Q ss_pred hhhhhhchhhHHHHHHHHHHHHHHHhccCcccchhhhHHHHHHHHHHHHHHHHHcccCccchHHHHHHHHHHHHHHHHHH
Q psy817 589 FREYCSHVTNLFEWYMIISVFLISCVYTKRTYIWQNHVGAVAVLLGWSNLMGMIGQLPSVGTYVAMFSRVQLEFLKLFQA 668 (854)
Q Consensus 589 ~~~y~~~~wN~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~ll~~~~~~~~~G~~v~m~~~~~~d~~~f~~i 668 (854)
...|+++.||++|++.++.-+....... .. ..-++..+|++.+.|..+.+..+...+.+-...+..++++
T Consensus 66 ~~~~~~~~~~i~Dl~~i~~p~~~~~~~~---~~-------~~r~lr~~R~lrl~r~~~~~~~l~~~l~~~~~~l~~~~~~ 135 (355)
T 3beh_A 66 GVVRDRTPKIAIDVLAVLVPLAAFLLDG---SP-------DWSLYCAVWLLKPLRDSTFFPVLGRVLANEARNLIGVTTL 135 (355)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHHHHHSCC---SG-------GGGGGGGGGGSHHHHTCSSHHHHHHHHHHTHHHHHHHHHH
T ss_pred cceeccCcchHHHHHHHHHHHHHHHhcc---ch-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458889999999987643222211110 00 1123445566677777776666666666666678888888
Q ss_pred HHHHHHHHHHHHHHhcCCC--CccCChHHHHHHHHHHHhcCcchhhhhccCCCCCccccchhHHHHHHHHHHHHHHHHHH
Q psy817 669 YICLLVGFTLTFCIVFPSE--DRFQNPIIGFINILVMMTGELNVNEVLLGTEAKPPVLLKGTAHIVFTIFMLFVTVVLMN 746 (854)
Q Consensus 669 ~~~~l~aF~~~f~~l~~~~--~~f~~~~~s~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ilf~~f~~~~~ivLlN 746 (854)
++++++.||+.+|.+.+.. +.|.++..+++-.+..++. ..|+|+ .|. ...+. +|+++.++..+++++
T Consensus 136 ~~~~~~~~a~~~~~~e~~~~~~~f~~~~~s~y~~~~t~tt-vGygd~-------~p~--t~~~~-~~~~~~~~~g~~~~~ 204 (355)
T 3beh_A 136 FGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLST-TGYGDT-------IPQ--SFAGR-VLAGAVMMSGIGIFG 204 (355)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTT-CCCSSS-------CCC--SHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHhheee-cCCCCC-------CCC--ChhHH-HHHHHHHHHHHHHHH
Confidence 8889999999999998764 3488888888887776652 333332 111 13344 567778888899999
Q ss_pred HHHHHHHhhHHHHH
Q psy817 747 LLVGIAVQDIQGLH 760 (854)
Q Consensus 747 lLIA~~~~~~~~v~ 760 (854)
+.||.+++.+++-.
T Consensus 205 ~~~~~i~~~~~~~~ 218 (355)
T 3beh_A 205 LWAGILATGFYQEV 218 (355)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887643
No 120
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=97.60 E-value=0.0026 Score=62.91 Aligned_cols=177 Identities=13% Similarity=0.157 Sum_probs=103.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHHHHHHHHHHhccCcccchhhhHHHHHHHHHHHHHH
Q psy817 560 FMETVWYVLALLATIELIRKIFGLVEYASFREYCSHVTNLFEWYMIISVFLISCVYTKRTYIWQNHVGAVAVLLGWSNLM 639 (854)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~y~~~~wN~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~ll 639 (854)
.......+..++...+.+...+. ....++|+++ |++|++.++-..+..... .+.....+.-++..+|++
T Consensus 40 ~l~~~d~~~~~iF~~e~~lr~~~---~~~~~~y~~~--~iiDllailP~~~~~~~~------~~~~~~~~lr~lRllRll 108 (223)
T 1orq_C 40 RLYLVDLILVIILWADYAYRAYK---SGDPAGYVKK--TLYEIPALVPAGLLALIE------GHLAGLGLFRLVRLLRFL 108 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT---TSCHHHHHHH--HHHHCTTHHHHHHHHHHH------HHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc---cccHHHHHHH--hHHHHHHHHHHHHHHHHh------cchhHHHHHHHHHHHHHH
Confidence 34555666667777777766554 2456789987 999997665443322100 000000111233334444
Q ss_pred HHHcccCccchHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCC--CCccCChHHHHHHHHHHHhcCcchhhhhc
Q psy817 640 GMIGQLPSVGTYVAMFSRVQL--EFLKLFQAYICLLVGFTLTFCIVFPS--EDRFQNPIIGFINILVMMTGELNVNEVLL 715 (854)
Q Consensus 640 ~~~~~~~~~G~~v~m~~~~~~--d~~~f~~i~~~~l~aF~~~f~~l~~~--~~~f~~~~~s~~~~~~~~~G~~~~~~~~~ 715 (854)
+.+|..+........+.+.++ .+...+++.+++++.+++.++..=++ ++.|.++..+++-.+..++. ..|+|+
T Consensus 109 R~~r~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~s~y~~~~t~tT-vGyGdi-- 185 (223)
T 1orq_C 109 RILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATT-VGYGDV-- 185 (223)
T ss_dssp HHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTCSCCSHHHHHHHHHHHHTT-CCCCSS--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCcCcchhHHHhHHhHHhc-cCCCCC--
Confidence 444444434444444544443 45566666666777777777766442 34578888888877766652 333322
Q ss_pred cCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy817 716 GTEAKPPVLLKGTAHIVFTIFMLFVTVVLMNLLVGIAVQDIQG 758 (854)
Q Consensus 716 ~~~~~~~~~~~~~~~ilf~~f~~~~~ivLlNlLIA~~~~~~~~ 758 (854)
.|. ...+. +++++.++..+.++++.+|.+++.+++
T Consensus 186 -----~P~--t~~~~-~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 186 -----VPA--TPIGK-VIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp -----CCC--SHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CCC--CHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 13455 466777777788999999999998876
No 121
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=92.85 E-value=1.1 Score=40.54 Aligned_cols=77 Identities=9% Similarity=0.133 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCccCChHHHHHHHHHHHhcCcchhhhhccCCCCCccccchhHHHHHHHHHHHHHH
Q psy817 663 LKLFQAYICLLVGFTLTFCIVFPSEDRFQNPIIGFINILVMMTGELNVNEVLLGTEAKPPVLLKGTAHIVFTIFMLFVTV 742 (854)
Q Consensus 663 ~~f~~i~~~~l~aF~~~f~~l~~~~~~f~~~~~s~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ilf~~f~~~~~i 742 (854)
+.++++.+++++.+|..+|....+. ++..+++-.+..++ .+.|.|+ .|. ...+.++.++++++. +
T Consensus 27 ~~~~~~~~~~~~~~g~~~~~~~e~~----~~~~a~y~~~~t~t-TvGyGd~-------~p~--t~~~r~~~~~~~~~g-~ 91 (148)
T 3vou_A 27 FQVLFVLTFLTLTSGTIFYSTVEGL----RPLDALYFSVVTLT-TVGDGNF-------SPQ--TDFGKVFTILYIFIG-I 91 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCC----CHHHHHHHHHHHHT-TCCCSSC-------CCC--SHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHH-ccCCCCC-------CCC--CccHHHHHHHHHHHH-H
Confidence 3445666666677777777765442 45555555444332 2333332 111 134666666665544 4
Q ss_pred HHHHHHHHHHHh
Q psy817 743 VLMNLLVGIAVQ 754 (854)
Q Consensus 743 vLlNlLIA~~~~ 754 (854)
.++=+.++.++.
T Consensus 92 ~~~~~~~~~~~~ 103 (148)
T 3vou_A 92 GLVFGFIHKLAV 103 (148)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 444456665555
No 122
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=92.26 E-value=0.53 Score=42.79 Aligned_cols=84 Identities=8% Similarity=0.024 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCC--CCccCChHHHHHHHHHHHhcCcchhhhhccCCCCCccccchhHHHHHHHHHHHHHHH
Q psy817 666 FQAYICLLVGFTLTFCIVFPS--EDRFQNPIIGFINILVMMTGELNVNEVLLGTEAKPPVLLKGTAHIVFTIFMLFVTVV 743 (854)
Q Consensus 666 ~~i~~~~l~aF~~~f~~l~~~--~~~f~~~~~s~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ilf~~f~~~~~iv 743 (854)
+++++++++.|+.++|.+=+. .+.|.++..+++-.+..++ .+.|.|+ .|. ...+.++ +++.++..++
T Consensus 56 ~~~~~~~i~~~a~~~~~~E~~~~~~~~~s~~~a~y~s~vTlt-TVGYGDi-------~P~--t~~gr~~-~~~~~l~Gv~ 124 (155)
T 2a9h_A 56 TVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETAT-TVGYGDL-------YPV--TLWGRCV-AVVVMVAGIT 124 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCSSTTSHHHHHHHHHHHHT-TCCCSSS-------CCC--SHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCccCcccceeheeeeeee-cccCCCC-------CCC--ChhHHHH-HHHHHHHHHH
Confidence 344455566777778777544 4568888888887766554 2444433 111 1345544 4555556666
Q ss_pred HHHHHHHHHHhhHHHHH
Q psy817 744 LMNLLVGIAVQDIQGLH 760 (854)
Q Consensus 744 LlNlLIA~~~~~~~~v~ 760 (854)
++=+.+|.+++.+.+-.
T Consensus 125 ~~a~~~~~i~~~~~~~~ 141 (155)
T 2a9h_A 125 SYGLVFAAVATWFVGRE 141 (155)
T ss_dssp HHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77788888877776543
No 123
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=90.85 E-value=2.8 Score=36.23 Aligned_cols=85 Identities=7% Similarity=0.042 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHhcCC--CCccCChHHHHHHHHHHHhcCcchhhhhccCCCCCccccchhHHHHHHHHHHHHHHHH
Q psy817 667 QAYICLLVGFTLTFCIVFPS--EDRFQNPIIGFINILVMMTGELNVNEVLLGTEAKPPVLLKGTAHIVFTIFMLFVTVVL 744 (854)
Q Consensus 667 ~i~~~~l~aF~~~f~~l~~~--~~~f~~~~~s~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ilf~~f~~~~~ivL 744 (854)
++++++++.++..++.+=++ ++.+.++.++++-.+..++ .+.|.|+ .|. ...+.+ ++++..+..+++
T Consensus 34 ~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~t-TvGyGDi-------~P~--t~~gr~-~~~~~~~~Gi~~ 102 (122)
T 2ih3_C 34 VLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETAT-TVAYGDL-------YPV--TLWGRL-VAVVVMVAGITS 102 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHT-TCCCSSS-------CCC--SHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhheeeecCCCCccCccccchhheeeeee-eeecCCC-------CCC--CccHHH-HHHHHHHHHHHH
Confidence 44455566677777766543 4567888888877666554 2333332 111 134554 445555566777
Q ss_pred HHHHHHHHHhhHHHHHhh
Q psy817 745 MNLLVGIAVQDIQGLHKT 762 (854)
Q Consensus 745 lNlLIA~~~~~~~~v~~~ 762 (854)
+-+.+|.+++.+++..++
T Consensus 103 ~~~~~~~i~~~~~~~~~~ 120 (122)
T 2ih3_C 103 FGLVTAALATWFVGREQE 120 (122)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 788888888888776543
No 124
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1
Probab=84.17 E-value=2.4 Score=37.25 Aligned_cols=42 Identities=12% Similarity=0.209 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHHHH
Q psy817 561 METVWYVLALLATIELIRKIFGLVEYASFREYCSHVTNLFEWYMIIS 607 (854)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~y~~~~wN~~d~~~~~~ 607 (854)
.....++..++...+.+...+. ..++.+|++ ||++|++.++-
T Consensus 39 l~~~d~~~~~iFt~E~~lRl~~---~~~~~~y~~--~niiDllailp 80 (132)
T 1ors_C 39 LYLVDLILVIILWADYAYRAYK---SGDPAGYVK--KTLYEIPALVP 80 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---TTSTTTTTT--TCGGGTGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---CCCHHHHHH--HHHHHHHHHHH
Confidence 4455666777777777777664 356788999 99999986543
No 125
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=84.09 E-value=21 Score=31.31 Aligned_cols=90 Identities=7% Similarity=0.013 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC--CCccCChHHHHHHHHHHHhcCcchhhhhccCCCCCccccchhHHHHHHHHHH
Q psy817 661 EFLKLFQAYICLLVGFTLTFCIVFPS--EDRFQNPIIGFINILVMMTGELNVNEVLLGTEAKPPVLLKGTAHIVFTIFML 738 (854)
Q Consensus 661 d~~~f~~i~~~~l~aF~~~f~~l~~~--~~~f~~~~~s~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ilf~~f~~ 738 (854)
.++..+++++++++.++..++.+-+. .+.+.++..+++-.+..++ .+.|.|+ .|. ...+.+ |+++.+
T Consensus 7 ~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~t-TvGyGd~-------~P~--t~~~r~-~~~~~~ 75 (139)
T 3eff_K 7 AAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETAT-TVGYGDL-------YPV--TLWGRL-VAVVVM 75 (139)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTSSCTTCCCCCHHHHHHHHHHHHT-TCCCSSS-------CCC--SSHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHheeee-cccCCCC-------cCC--CcCHHH-HHHHHH
Confidence 34455566666777788888877553 3457778787776666443 2334433 111 134554 445556
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHh
Q psy817 739 FVTVVLMNLLVGIAVQDIQGLHK 761 (854)
Q Consensus 739 ~~~ivLlNlLIA~~~~~~~~v~~ 761 (854)
++.+.++-+.++.+++.+.+-.+
T Consensus 76 ~~G~~~~~~~~~~i~~~~~~~~~ 98 (139)
T 3eff_K 76 VAGITSFGLVTAALATWFVGREQ 98 (139)
T ss_dssp HHHHHHHHHHHHHHTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888888888887755443
No 126
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=74.01 E-value=3.3 Score=36.65 Aligned_cols=84 Identities=10% Similarity=0.237 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCccCChHHHHHHHHHHHhcCcchhhhhccCCCCCccccchhHHHHHHHHHHHHH
Q psy817 662 FLKLFQAYICLLVGFTLTFCIVFPSEDRFQNPIIGFINILVMMTGELNVNEVLLGTEAKPPVLLKGTAHIVFTIFMLFVT 741 (854)
Q Consensus 662 ~~~f~~i~~~~l~aF~~~f~~l~~~~~~f~~~~~s~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ilf~~f~~~~~ 741 (854)
+..++++++++++-++.+++..- +.+.++..+++-.+..++ .+.|+|+. |. ...+.+ |+++..+..
T Consensus 16 l~~~l~~~~~~~~~~~~~~~~~e---~~~~~~~~a~y~~~~T~t-TvGyGDi~-------P~--t~~gr~-~~~~~~~~g 81 (137)
T 4h33_A 16 LNRFLMIFVLLVIIIPVPMVFIE---PEINNYPDALWWAIVTAT-TVGYGDIV-------PV--TPIGRI-LASIMMLFG 81 (137)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHC---SSCCSHHHHHHHHHHHHT-TCCCSSSC-------CC--SHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHH-cccCCCCC-------CC--CHhHHH-HHHHHHHHH
Confidence 44555555555555666665543 346667777666555443 23444331 11 134554 455555566
Q ss_pred HHHHHHHHHHHHhhHHHH
Q psy817 742 VVLMNLLVGIAVQDIQGL 759 (854)
Q Consensus 742 ivLlNlLIA~~~~~~~~v 759 (854)
+.++-+++|.+++-+.+-
T Consensus 82 ~~~~~~~~~~i~~~~~~~ 99 (137)
T 4h33_A 82 IAFIGMITSTITNFFRCK 99 (137)
T ss_dssp HHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777888899888877653
No 127
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=66.39 E-value=14 Score=31.34 Aligned_cols=78 Identities=12% Similarity=0.169 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccCChHHHHHHHHHHHhcCcchhhhhccCCCCCccccchhHHHHHHHHHHHHHHH
Q psy817 664 KLFQAYICLLVGFTLTFCIVFPSEDRFQNPIIGFINILVMMTGELNVNEVLLGTEAKPPVLLKGTAHIVFTIFMLFVTVV 743 (854)
Q Consensus 664 ~f~~i~~~~l~aF~~~f~~l~~~~~~f~~~~~s~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ilf~~f~~~~~iv 743 (854)
+..++.+++++.+|..++....+. ++.++++-.+..++ .+.|.|+ .|. ...+.++-+++++ ..+.
T Consensus 25 ~~~~~~~~~~~~~g~~~~~~~e~~----~~~~a~y~~~~T~t-TvGyGdi-------~P~--t~~gr~~~~~~~~-~G~~ 89 (114)
T 2q67_A 25 QVLFVLTILTLISGTIFYSTVEGL----RPIDALYFSVVTLT-TVGAGNF-------SPQ--TDFGKIFTILYIF-IGIG 89 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCC----CHHHHHHHHHHHHT-SCCCSSC-------CCC--SHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHhc-ceeCCCC-------ccC--CHhHHHHHHHHHH-HHHH
Confidence 344455555666677776665543 45555554444332 2333322 111 1345554444444 4444
Q ss_pred HHHHHHHHHHhhH
Q psy817 744 LMNLLVGIAVQDI 756 (854)
Q Consensus 744 LlNlLIA~~~~~~ 756 (854)
++=+.++.+++.+
T Consensus 90 ~~~~~~~~l~~~~ 102 (114)
T 2q67_A 90 LVFGFIHKLAVNV 102 (114)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4445555555443
No 128
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=56.44 E-value=8.1 Score=32.07 Aligned_cols=90 Identities=8% Similarity=-0.051 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC--CCccCChHHHHHHHHHHHhcCcchhhhhccCCCCCccccchhHHHHHHHHHHH
Q psy817 662 FLKLFQAYICLLVGFTLTFCIVFPS--EDRFQNPIIGFINILVMMTGELNVNEVLLGTEAKPPVLLKGTAHIVFTIFMLF 739 (854)
Q Consensus 662 ~~~f~~i~~~~l~aF~~~f~~l~~~--~~~f~~~~~s~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ilf~~f~~~ 739 (854)
++..+++++++++.++..++.+=+. .+++.++..+++-.+..++ .+.|.|+. |. ...+.+ |+++..+
T Consensus 8 ~l~~~~~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~t-TvGyGDi~-------P~--t~~gr~-~~~~~~l 76 (103)
T 2k1e_A 8 AQKAEEELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETAT-TVGYGDRY-------PV--TEEGRK-VAEQVMK 76 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCGGGTTTTTTGGGG-CCSCCSSC-------CC--SSSCTH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhccCCCCcccccHHHHHHHHHHHHh-cccCCCCC-------CC--ChhHHH-HHHHHHH
Confidence 3444555666677778888876543 3445566555554433222 23333221 11 122443 4455555
Q ss_pred HHHHHHHHHHHHHHhhHHHHHhh
Q psy817 740 VTVVLMNLLVGIAVQDIQGLHKT 762 (854)
Q Consensus 740 ~~ivLlNlLIA~~~~~~~~v~~~ 762 (854)
..++++-+.+|.+.+.+.+-.++
T Consensus 77 ~G~~~~~~~~~~i~~~~~~~~~~ 99 (103)
T 2k1e_A 77 AGIEVFALVTAALATDFVRREEE 99 (103)
T ss_dssp HHHHHHHHTHHHHHTTGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677778888888777665443
No 129
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}
Probab=54.18 E-value=50 Score=29.30 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhchhhHHHHHHH
Q psy817 561 METVWYVLALLATIELIRKIFGLVEYASFREYCSHVTNLFEWYMI 605 (854)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~y~~~~wN~~d~~~~ 605 (854)
....+++++++...+.+...+. ....++|+++ |++|++.+
T Consensus 54 ~~~id~~~~~iF~~Ey~lRl~~---a~~k~~f~~~--~iiDllai 93 (147)
T 2kyh_A 54 LYLVDLILVIILWADYAYRAYK---SGDPAGYVKK--TLYEIPAL 93 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HTCHHHHHHH--STTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---CCcHHHHHHH--HHHHHHHH
Confidence 4455566666666777666654 3556789986 99998754
No 130
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=53.83 E-value=35 Score=27.77 Aligned_cols=80 Identities=14% Similarity=0.213 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCccCChHHHHHHHHHHHhcCcchhhhhccCCCCCccccchhHHHHHHHHHHHHHH
Q psy817 663 LKLFQAYICLLVGFTLTFCIVFPSEDRFQNPIIGFINILVMMTGELNVNEVLLGTEAKPPVLLKGTAHIVFTIFMLFVTV 742 (854)
Q Consensus 663 ~~f~~i~~~~l~aF~~~f~~l~~~~~~f~~~~~s~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ilf~~f~~~~~i 742 (854)
++.+++.+++++.++..+|....+ .++.++++-.+..++ .+.|.|+ .|. ...+.++-++++ +..+
T Consensus 7 ~~~~~~~~~~~~~~g~~~~~~~e~----~~~~~a~yf~~~T~t-TvGyGdi-------~P~--t~~gr~~~~~~~-~~G~ 71 (97)
T 3ouf_A 7 FQVLFVLTILTLISGTIFYSTVEG----LRPIDALYFSVVTLT-TVGYGDF-------SPQ--TDFGKIFTILYI-FIGI 71 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSC----CCHHHHHHHHHHHHT-TCCCCSS-------CCC--SHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHH-ccCCCCC-------CCC--CccHHHHHHHHH-HHHH
Confidence 344444555555566666655544 244555554444332 2333332 111 134555554444 4666
Q ss_pred HHHHHHHHHHHhhHH
Q psy817 743 VLMNLLVGIAVQDIQ 757 (854)
Q Consensus 743 vLlNlLIA~~~~~~~ 757 (854)
.++-++++.++..++
T Consensus 72 ~~~~~~i~~i~~~~~ 86 (97)
T 3ouf_A 72 GLVFGFIHKLAVNVQ 86 (97)
T ss_dssp HHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHh
Confidence 667777777776654
No 131
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=49.69 E-value=61 Score=32.78 Aligned_cols=34 Identities=3% Similarity=0.060 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhh
Q psy817 730 HIVFTIFMLFVTVVLMNLLVGIAVQDIQGLHKTA 763 (854)
Q Consensus 730 ~ilf~~f~~~~~ivLlNlLIA~~~~~~~~v~~~a 763 (854)
+-+|+++.+++-+.++=++++++++-++.+.++.
T Consensus 257 y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~~r~ 290 (309)
T 3um7_A 257 YQPLVWFWILLGLAYFASVLTTIGNWLRVVSRRT 290 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666777777788888777766665443
No 132
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=46.20 E-value=1e+02 Score=31.03 Aligned_cols=84 Identities=10% Similarity=0.106 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC--CCCccCChHHHHHHHHHHHhcCcchhhhhccCCCCCccccchhHHHHHHHHHHHHH
Q psy817 664 KLFQAYICLLVGFTLTFCIVFP--SEDRFQNPIIGFINILVMMTGELNVNEVLLGTEAKPPVLLKGTAHIVFTIFMLFVT 741 (854)
Q Consensus 664 ~f~~i~~~~l~aF~~~f~~l~~--~~~~f~~~~~s~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ilf~~f~~~~~ 741 (854)
.|+++|++..+.||..++..-. ....+.++..+++-.+..++ .+.|.++ .|. ...+. +++++..++.
T Consensus 52 ~~~~~~~~~~l~fa~ly~~~~~~~~~~~~~s~~~a~yfs~vT~t-TvGYGDi-------~P~--t~~gr-~~~~~~~l~G 120 (301)
T 1xl4_A 52 LITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMA-TIGYGKL-------IPI--GPLAN-TLVTLEALCG 120 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCSTTSCTTCHHHHHHHHHHHHT-TCCCSSS-------CCC--HHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCCCCcCCHHHHHHHhhhhee-ccCCCCC-------cCC--CHHHH-HHHHHHHHHH
Confidence 4455556666778888655532 12346666666665554333 2333332 111 12344 4556666666
Q ss_pred HHHHHHHHHHHHhhHHH
Q psy817 742 VVLMNLLVGIAVQDIQG 758 (854)
Q Consensus 742 ivLlNlLIA~~~~~~~~ 758 (854)
++++=+++|++..-+++
T Consensus 121 ~~~~a~~~g~v~~~~~~ 137 (301)
T 1xl4_A 121 MLGLAVAASLIYARFTR 137 (301)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77777788887776643
No 133
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=35.79 E-value=43 Score=36.80 Aligned_cols=137 Identities=13% Similarity=0.034 Sum_probs=60.1
Q ss_pred HHHHHHcCCHH----HHHHHHHcCCCCCCCCccHHHHHHHcCC--------------HHHHHHHHhCCCCccccCCCccH
Q psy817 125 LLWCVFVKRED----LLDALHQLGADLSNDKYGALHLAAFNGS--------------IKGCSWLMLHGHDINFTKDSYTP 186 (854)
Q Consensus 125 L~~Aa~~g~~~----iv~~Ll~~g~~~~~~g~t~L~~A~~~g~--------------~~iv~~Ll~~g~~~~~~~~g~t~ 186 (854)
|...++.|+.+ +.+...+.|..+|..-++.|..|+..+. .++.+.+.+.|..+|... -.+.
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t-yn~l 111 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT-FTNG 111 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH-HHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH-HHHH
Confidence 44445556543 3334445677776555555555554321 234445555565544211 1223
Q ss_pred HHHHHhCCCHHHHHHH----HhCCCCCC----chHHHHHHHcCCHHHHHHH----HHCCCCCCCCCCCCCcHHHHHHHcC
Q psy817 187 LHFAVLGNYVDCAKFL----IKNKAHIH----ETIVHSAVSTNAVDCVQLL----LSLQINPNVLNNKGVSPLHIAADRG 254 (854)
Q Consensus 187 L~~A~~~~~~~iv~~L----l~~~~~~~----~t~L~~A~~~~~~~~v~~L----l~~g~~~~~~d~~g~t~L~~A~~~g 254 (854)
+...+..|+.+-+..+ .+.|..+. .+.+...+..|+.+-+..+ .+.|..+|.... .+.+...+..|
T Consensus 112 I~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty--~~Li~~~~~~g 189 (501)
T 4g26_A 112 ARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPEL--AALLKVSMDTK 189 (501)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHH--HHHHHHHHHTT
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHhhCC
Confidence 3444455555433333 23333331 2344444555554433332 334554433211 11233334555
Q ss_pred CHHHHHHHHH
Q psy817 255 LISCLKAILD 264 (854)
Q Consensus 255 ~~~iv~~Ll~ 264 (854)
+.+-+..+++
T Consensus 190 ~~d~A~~ll~ 199 (501)
T 4g26_A 190 NADKVYKTLQ 199 (501)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 5554444443
No 134
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=31.75 E-value=47 Score=33.95 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Q psy817 731 IVFTIFMLFVTVVLMNLLVGIAVQDIQGLHK 761 (854)
Q Consensus 731 ilf~~f~~~~~ivLlNlLIA~~~~~~~~v~~ 761 (854)
-+++++..++.++++=+.+|++...+.+-++
T Consensus 106 r~~~~~~~l~G~~~~a~~~g~i~~~~~~~~~ 136 (321)
T 2qks_A 106 HWIATLEIFVGMSSIALATGCAFIKMSQPKK 136 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666667777777888888877665433
No 135
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=25.76 E-value=1.9e+02 Score=32.00 Aligned_cols=45 Identities=13% Similarity=0.154 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCccCChHHHHHHHHHH
Q psy817 659 QLEFLKLFQAYICLLVGFTLTFCIVFP-SEDRFQNPIIGFINILVM 703 (854)
Q Consensus 659 ~~d~~~f~~i~~~~l~aF~~~f~~l~~-~~~~f~~~~~s~~~~~~~ 703 (854)
+..+..++++++++++.|++.|+.+.. -...-.++..+++-.+..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~y~~~~t 62 (565)
T 4gx0_A 17 LKVLLLYCAFLLVMLLAYASIFRYLMWHLEGRAYSFMAGIYWTITV 62 (565)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhheeeee
Confidence 334556666666667777777766532 111223455555544443
No 136
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=24.40 E-value=3.5e+02 Score=24.65 Aligned_cols=132 Identities=10% Similarity=-0.017 Sum_probs=0.0
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCCCccHHHHHHHcCCHHHHHHHHhCCCCccccCCCccHHHHHHhCCCHHHHHHH--
Q psy817 125 LLWCVFVKREDLLDALHQLGADLSNDKYGALHLAAFNGSIKGCSWLMLHGHDINFTKDSYTPLHFAVLGNYVDCAKFL-- 202 (854)
Q Consensus 125 L~~Aa~~g~~~iv~~Ll~~g~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~g~t~L~~A~~~~~~~iv~~L-- 202 (854)
+..|...|+.++..-+.+.. +....=.+-=..|...|++++++.-..+--|+. ..+......|+.+-++.+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l-~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~------~L~~Ly~~tg~~e~L~kla~ 84 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL-NDSITWERLIQEALAQGNASLAEMIYQTQHSFD------KLSFLYLVTGDVNKLSKMQN 84 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH------HHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh-CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHH------HHHHHHHHhCCHHHHHHHHH
Q ss_pred HhCCCCCCchHHHHHHHcCCHH-HHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcc
Q psy817 203 IKNKAHIHETIVHSAVSTNAVD-CVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVD 271 (854)
Q Consensus 203 l~~~~~~~~t~L~~A~~~~~~~-~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~ 271 (854)
+....+....+.+.+...|+++ +++.|.+.| ..--+...|-.+|..++.+.+++.-+.+..
T Consensus 85 iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~~--------r~~eA~~~A~t~g~~~~a~~~~~~~~~~~~ 146 (177)
T 3mkq_B 85 IAQTREDFGSMLLNTFYNNSTKERSSIFAEGG--------SLPLAYAVAKANGDEAAASAFLEQAEVDEQ 146 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTT--------CHHHHHHHHHHTTCHHHHHHHHHHTTCCGG
T ss_pred HHHHCccHHHHHHHHHHcCCHHHHHHHHHHCC--------ChHHHHHHHHHcCcHHHHHHHHHHhCCccc
No 137
>2kav_A Sodium channel protein type 2 subunit alpha; voltage-gated sodium channel, alternative splicing, disease epilepsy, glycoprotein, ION transport; NMR {Homo sapiens} PDB: 2kbi_A
Probab=20.95 E-value=8.1 Score=33.44 Aligned_cols=38 Identities=8% Similarity=0.003 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhhHHHHHhhhhH---H-HHHHHHHHHHHHHH
Q psy817 743 VLMNLLVGIAVQDIQGLHKTAGL---D-KLVRQTELIHSLEL 780 (854)
Q Consensus 743 vLlNlLIA~~~~~~~~v~~~a~~---~-~~~~~~~~i~~~e~ 780 (854)
=|+||+||++.+.|+.+.++... + -+.+=++.+.+|+-
T Consensus 13 ~~LNLfIAVIlenF~~~~~~~~~~l~~~dl~~F~~~W~~fDP 54 (129)
T 2kav_A 13 GLVPRGSHMASENFSVATEESAEPLSEDDFEMFYEVWEKFDP 54 (129)
T ss_dssp -----------CCSCCTTSSCSCSSCHHHHHHHHHHHHHHCT
T ss_pred chhheeeeeeeccHHHHHHhhccCCCHHHHHHHHHHHHhcCC
Confidence 37999999999999988776542 1 22222455555543
Done!