RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy817
(854 letters)
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 118 bits (298), Expect = 2e-31
Identities = 55/120 (45%), Positives = 81/120 (67%), Gaps = 2/120 (1%)
Query: 280 TALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNA 339
T LHLAA NG++E +++LLEN A+ N +++ + PLHLAAK +E +++LL KG+ VNA
Sbjct: 9 TPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA 68
Query: 340 SDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLI 399
D D TPLH + L V +++LLK GA+VNARD G +P+H+AA + + V L+
Sbjct: 69 RDKDGNTPLHLAARNGNLDV--VKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126
Score = 111 bits (280), Expect = 6e-29
Identities = 54/130 (41%), Positives = 85/130 (65%), Gaps = 4/130 (3%)
Query: 237 NVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRI 296
N + G +PLH+AA G + +K +L++G ADV+ K + R T LHLAA+NG++E +++
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENG-ADVNAKDNDGR-TPLHLAAKNGHLEIVKL 58
Query: 297 LLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNI 356
LLE A+ N R+ PLHLAA+ +++ +++LL+ G+ VNA D D RTPLH +
Sbjct: 59 LLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGH 118
Query: 357 LSVHPLEILL 366
L V +++LL
Sbjct: 119 LEV--VKLLL 126
Score = 105 bits (265), Expect = 7e-27
Identities = 44/124 (35%), Positives = 72/124 (58%), Gaps = 8/124 (6%)
Query: 181 KDSYTPLHFAVLGNYVDCAKFLIKNKAHIHE------TIVHSAVSTNAVDCVQLLLSLQI 234
+D TPLH A +++ K L++N A ++ T +H A ++ V+LLL
Sbjct: 5 EDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA 64
Query: 235 NPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECL 294
+ N + G +PLH+AA G + +K +L G ADV+ + K+ R T LHLAA+NG++E +
Sbjct: 65 DVNARDKDGNTPLHLAARNGNLDVVKLLLKHG-ADVNARDKDGR-TPLHLAAKNGHLEVV 122
Query: 295 RILL 298
++LL
Sbjct: 123 KLLL 126
Score = 95.1 bits (237), Expect = 4e-23
Identities = 46/118 (38%), Positives = 72/118 (61%), Gaps = 2/118 (1%)
Query: 305 NERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEI 364
N R+ + PLHLAA +E +++LL G+ VNA D D RTPLH + L + +++
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEI--VKL 58
Query: 365 LLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRN 422
LL+ GA+VNARD G +P+H+AA + V L+ HGAD++++ G + L + +N
Sbjct: 59 LLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKN 116
Score = 75.5 bits (186), Expect = 3e-16
Identities = 41/145 (28%), Positives = 61/145 (42%), Gaps = 31/145 (21%)
Query: 123 TALLWCVFVKREDLLDALHQLGADLSN-DKYG--ALHLAAFNGSIKGCSWLMLHGHDIN- 178
T L +++ L + GAD++ D G LHLAA NG ++ L+ G D+N
Sbjct: 9 TPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA 68
Query: 179 FTKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNV 238
KD TPLH A +D K L+K+ A + N
Sbjct: 69 RDKDGNTPLHLAARNGNLDVVKLLLKHGA---------------------------DVNA 101
Query: 239 LNNKGVSPLHIAADRGLISCLKAIL 263
+ G +PLH+AA G + +K +L
Sbjct: 102 RDKDGRTPLHLAAKNGHLEVVKLLL 126
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 96.7 bits (241), Expect = 4e-21
Identities = 64/241 (26%), Positives = 106/241 (43%), Gaps = 36/241 (14%)
Query: 181 KDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHS-----------AVSTNAVDCVQLL 229
K PL+ A +D K L+ N A I+ + ++ T+ + V+LL
Sbjct: 33 KKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLL 92
Query: 230 LSLQINPNVLNNKGVSPLHIAADR--GLISCLKAILDSGMADVDIKTKERRVTALHLAAE 287
L N N +N G++PL A + S ++ +LD+G A+V+IK LHL E
Sbjct: 93 LEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNG-ANVNIKNS-DGENLLHLYLE 150
Query: 288 NGYV--ECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNR 345
+ + + L++L++ + N +N V LL G +N D
Sbjct: 151 SNKIDLKILKLLIDKGVDINAKN--------------RVNY---LLSYGVPINIKDVYGF 193
Query: 346 TPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADI 405
TPLH ++ N ++ LL GAN N + +G +P+HIA L+ + L+ +G I
Sbjct: 194 TPLHYAVYNNNPEF--VKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSI 251
Query: 406 S 406
Sbjct: 252 K 252
Score = 77.4 bits (191), Expect = 7e-15
Identities = 59/210 (28%), Positives = 97/210 (46%), Gaps = 25/210 (11%)
Query: 236 PNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYV---- 291
+ K V PL++A + I +K +LD+G AD++ TK T LH + Y
Sbjct: 28 NDYSYKKPVLPLYLAKEARNIDVVKILLDNG-ADINSSTKNNS-TPLHYLSNIKYNLTDV 85
Query: 292 -ECLRILLENHANCNERNHKEQIPLHLAA--KCQSVECMEMLLRKGSQVNASDCDNRTPL 348
E +++LLE AN N ++ PL A K S +E LL G+ VN + D L
Sbjct: 86 KEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLL 145
Query: 349 HASLSKNILSVHPLEILLKWGANVNA----------------RDIFGYSPIHIAALSELS 392
H L N + + L++L+ G ++NA +D++G++P+H A +
Sbjct: 146 HLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNP 205
Query: 393 QCVDCLIMHGADISSKTPSGSSALSIIMRN 422
+ V L+ GA+ + G + L I + N
Sbjct: 206 EFVKYLLDLGANPNLVNKYGDTPLHIAILN 235
Score = 63.9 bits (156), Expect = 1e-10
Identities = 45/173 (26%), Positives = 69/173 (39%), Gaps = 33/173 (19%)
Query: 135 DLLDALHQLGADLSN-DKYGA--LHLAAFN--GSIKGCSWLMLHGHDINF-TKDSYTPLH 188
+++ L + GA+++ D G L A S +L+ +G ++N D LH
Sbjct: 87 EIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLH 146
Query: 189 FAVLGNYVD--CAKFLIKNKAHIH----------------------ETIVHSAVSTNAVD 224
+ N +D K LI I+ T +H AV N +
Sbjct: 147 LYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPE 206
Query: 225 CVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKER 277
V+ LL L NPN++N G +PLHIA K +L++G IKT
Sbjct: 207 FVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNG---PSIKTIIE 256
Score = 59.3 bits (144), Expect = 4e-09
Identities = 48/166 (28%), Positives = 79/166 (47%), Gaps = 18/166 (10%)
Query: 255 LISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIP 314
+ + I++ + D K + V L+LA E ++ ++ILL+N A+ N P
Sbjct: 15 VKNIKYIIMEDDLNDYSYK---KPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTP 71
Query: 315 LHLAAKCQSV-----ECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWG 369
LH + + E +++LL G+ VNA D + TPL ++SK S +E LL G
Sbjct: 72 LHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNG 131
Query: 370 ANVNARDIFGYSPIHIAALSELSQC------VDCLIMHGADISSKT 409
ANVN ++ G + +H+ L + LI G DI++K
Sbjct: 132 ANVNIKNSDGENLLHLY----LESNKIDLKILKLLIDKGVDINAKN 173
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 87.3 bits (217), Expect = 8e-21
Identities = 37/95 (38%), Positives = 61/95 (64%), Gaps = 4/95 (4%)
Query: 247 LHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNE 306
LH+AA G + +K +L+ G ADV++ + TALHLAA NG +E +++LLE+ A+ N
Sbjct: 1 LHLAAKNGNLELVKLLLEKG-ADVNLGDTD---TALHLAARNGNLEIVKLLLEHGADVNA 56
Query: 307 RNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASD 341
++ LHLAA+ ++E +++LL G+ +N D
Sbjct: 57 KDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91
Score = 84.6 bits (210), Expect = 6e-20
Identities = 37/95 (38%), Positives = 60/95 (63%), Gaps = 4/95 (4%)
Query: 282 LHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASD 341
LHLAA+NG +E +++LLE A+ N + LHLAA+ ++E +++LL G+ VNA D
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGD--TDTALHLAARNGNLEIVKLLLEHGADVNAKD 58
Query: 342 CDNRTPLHASLSKNILSVHPLEILLKWGANVNARD 376
D T LH + L + +++LL+ GA++N +D
Sbjct: 59 KDGNTALHLAARNGNLEI--VKLLLEHGADINLKD 91
Score = 73.1 bits (180), Expect = 9e-16
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 155 LHLAAFNGSIKGCSWLMLHGHDINFTKDSYTPLHFAVLGNYVDCAKFLIKNKAHI----- 209
LHLAA NG+++ L+ G D+N D+ T LH A ++ K L+++ A +
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNL-GDTDTALHLAARNGNLEIVKLLLEHGADVNAKDK 59
Query: 210 -HETIVHSAVSTNAVDCVQLLLSLQINPNVLN 240
T +H A ++ V+LLL + N+ +
Sbjct: 60 DGNTALHLAARNGNLEIVKLLLEHGADINLKD 91
Score = 69.6 bits (171), Expect = 1e-14
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 5/91 (5%)
Query: 187 LHFAVLGNYVDCAKFLIKNKAHIHE----TIVHSAVSTNAVDCVQLLLSLQINPNVLNNK 242
LH A ++ K L++ A ++ T +H A ++ V+LLL + N +
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDKD 60
Query: 243 GVSPLHIAADRGLISCLKAILDSGMADVDIK 273
G + LH+AA G + +K +L+ G AD+++K
Sbjct: 61 GNTALHLAARNGNLEIVKLLLEHG-ADINLK 90
Score = 69.2 bits (170), Expect = 2e-14
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 125 LLWCVFVKREDLLDALHQLGADLS-NDKYGALHLAAFNGSIKGCSWLMLHGHDINFT-KD 182
L +L+ L + GAD++ D ALHLAA NG+++ L+ HG D+N KD
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDKD 60
Query: 183 SYTPLHFAVLGNYVDCAKFLIKNKAHIHET 212
T LH A ++ K L+++ A I+
Sbjct: 61 GNTALHLAARNGNLEIVKLLLEHGADINLK 90
Score = 43.8 bits (104), Expect = 1e-05
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 120 EKTTALLWCVFVKREDLLDALHQLGADL-SNDKYG--ALHLAAFNGSIKGCSWLMLHGHD 176
+ TAL +++ L + GAD+ + DK G ALHLAA NG+++ L+ HG D
Sbjct: 27 DTDTALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGAD 86
Query: 177 IN 178
IN
Sbjct: 87 IN 88
Score = 42.6 bits (101), Expect = 4e-05
Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 348 LHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISS 407
LH + L + +++LL+ GA+VN D + +H+AA + + V L+ HGAD+++
Sbjct: 1 LHLAAKNGNLEL--VKLLLEKGADVNLGD--TDTALHLAARNGNLEIVKLLLEHGADVNA 56
Query: 408 KTPSGSSALSIIMRN 422
K G++AL + RN
Sbjct: 57 KDKDGNTALHLAARN 71
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 83.6 bits (206), Expect = 2e-16
Identities = 96/357 (26%), Positives = 163/357 (45%), Gaps = 63/357 (17%)
Query: 131 VKREDLLDA--LHQLGADL-SNDKYG--ALHLAAFNGSIKGCSWLMLHGHDIN-FTKDSY 184
+++++LL A L + GAD+ + D Y +H AA G+ K + L+ +G D+N D
Sbjct: 153 IQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDL 212
Query: 185 TPLHFAVLGNYVDCAKFLIKNKAHIHETIVH--SAVSTNAVDCVQLLLSLQINPNVLNNK 242
+ L AV +D K +I N+++I++ + A+ ++ LL + N +++
Sbjct: 213 SVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDC 272
Query: 243 GVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHA 302
+PLH A+ +S L + LLE A
Sbjct: 273 KNTPLHHASQAPSLSRL----------------------------------VPKLLERGA 298
Query: 303 NCNERNHKEQIPLHLAAK-CQSVECMEMLLRKGSQVNASDCDNRTPLH--ASLSKNILSV 359
+ N +N K + PL+L AK E + L+ G+ VNA+D TPLH ++L +N V
Sbjct: 299 DVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIV 358
Query: 360 HPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSII 419
LL+ GANVNARD +PIH AA+ ++ L+ +GADI + + +AL
Sbjct: 359 ---ITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFA 415
Query: 420 MRNTPSSISSVRKKLDSSISLQDPEASTKDIELKLNF-----------KYILQNGPD 465
+ T + SV+ +D ++ + KD+ L++ + +L NG D
Sbjct: 416 LCGT-NPYMSVKTLIDRGANVN---SKNKDLSTPLHYACKKNCKLDVIEMLLDNGAD 468
Score = 56.6 bits (136), Expect = 4e-08
Identities = 63/215 (29%), Positives = 104/215 (48%), Gaps = 20/215 (9%)
Query: 155 LHLAAFNG-SIKGCSWLMLHGHDINFTKDSY-TPLHFA-VLGNYVDCAKFLIKNKAHIH- 210
L+L A NG + L++ G D+N Y TPLH A L D L++ A+++
Sbjct: 311 LYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNA 370
Query: 211 -----ETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIA-ADRGLISCLKAILD 264
+T +H A N V + LL + L+ K + LH A +K ++D
Sbjct: 371 RDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLID 430
Query: 265 SGMADVDIKTKERRVTALHLAAENG-YVECLRILLENHANCNERNHKEQIPLHLAAKCQS 323
G A+V+ K K+ T LH A + ++ + +LL+N A+ N N + Q PL +A +
Sbjct: 431 RG-ANVNSKNKDLS-TPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEYHG 488
Query: 324 VECMEMLLRKGSQVNASDCDNRTPLHASLSKNILS 358
+ + +LL G+++ D+R LH SL+ N+ S
Sbjct: 489 I--VNILLHYGAELR----DSRV-LHKSLNDNMFS 516
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 82.3 bits (203), Expect = 2e-16
Identities = 86/331 (25%), Positives = 139/331 (41%), Gaps = 62/331 (18%)
Query: 174 GHDINFTKD-SYTPLHFAVLGNYVDCAKFLIKNKA---HIHETIVH---SAVSTNAVDCV 226
G+ IN + D + TPL A+ + IK+ A HI+ I H +A+ A D +
Sbjct: 25 GNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDII 84
Query: 227 QLLLSLQINPNVLNNKGVSPLHIAADRGLISCL-----KAILDSGMADVDIKTKERRVTA 281
+LL+ ++ ++L I C+ K ILD G+ DV+IK E + T
Sbjct: 85 KLLIDNGVDTSILP---------------IPCIEKDMIKTILDCGI-DVNIKDAELK-TF 127
Query: 282 LHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASD 341
LH A + G +E +++L E A+ N + P+H+A K + +++LL KG+ N D
Sbjct: 128 LHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKD 187
Query: 342 CDNRTPLHASL--------------SKNIL-----SVHPLEI----------LLKWGANV 372
+ +PLH + +I+ PL LL A++
Sbjct: 188 NNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASI 247
Query: 373 NARDIFGYSPIHIAALSELSQ-CVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVR 431
N +DI G +P+H A +D L+ H ADIS K G + + + V
Sbjct: 248 NDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFKYINK--DPVI 305
Query: 432 KKLDSSISLQDPEASTKDIELKLNFKYILQN 462
K + ++ L KD + L I N
Sbjct: 306 KDIIANAVLIKEADKLKDSDF-LEHIEIKDN 335
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 81.5 bits (201), Expect = 5e-16
Identities = 58/191 (30%), Positives = 93/191 (48%), Gaps = 8/191 (4%)
Query: 268 ADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECM 327
AD+++K + + TALH A EN +LL AN N + PLH A K + +
Sbjct: 158 ADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIV 217
Query: 328 EMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARD-IFGYSPIHIA 386
+LL G+ +A D TPLH S+ L++LL+ G +VNA+ I G + +H +
Sbjct: 218 HILLENGASTDARDKCGNTPLHISVGY-CKDYDILKLLLEHGVDVNAKSYILGLTALHSS 276
Query: 387 ALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSSISLQDPEAS 446
SE + + L+ +GADI+S + LS ++ I ++ + L S+I L +
Sbjct: 277 IKSE--RKLKLLLEYGADINSLNSYKLTPLSSAVK-QYLCI-NIGRILISNICLL--KRI 330
Query: 447 TKDIELKLNFK 457
DI+ F
Sbjct: 331 KPDIKNSEGFI 341
Score = 76.5 bits (188), Expect = 2e-14
Identities = 62/240 (25%), Positives = 103/240 (42%), Gaps = 34/240 (14%)
Query: 215 HSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAIL------DSGMA 268
H AV +D V+ LL+ N N +++ ++PLHI +K ++
Sbjct: 42 HQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYT 101
Query: 269 DVDIKT--KERRVTALHLAAENGY---------------------VECLRILLENHANCN 305
V IK R V + N Y E ++LL A+ N
Sbjct: 102 LVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADIN 161
Query: 306 ERN-HKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEI 364
++ HK LH A + + E+LL G+ VN D N +PLH ++ + + I
Sbjct: 162 MKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPI--VHI 219
Query: 365 LLKWGANVNARDIFGYSPIHIAALSELS-QCVDCLIMHGADISSK-TPSGSSALSIIMRN 422
LL+ GA+ +ARD G +P+HI+ + L+ HG D+++K G +AL +++
Sbjct: 220 LLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIKS 279
Score = 36.8 bits (85), Expect = 0.055
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 17/82 (20%)
Query: 308 NHKEQ----------IPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNIL 357
+H E IPLH A + ++++ ++ LL +G VN D + TPLH I+
Sbjct: 24 DHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLH------II 77
Query: 358 SVHPLEILLKWG-ANVNARDIF 378
P ++ +K ++N +F
Sbjct: 78 CKEPNKLGMKEMIRSINKCSVF 99
Score = 34.1 bits (78), Expect = 0.32
Identities = 33/156 (21%), Positives = 70/156 (44%), Gaps = 30/156 (19%)
Query: 282 LHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASD 341
LH A E ++ ++ LL N N+ +H++ PLH+ K + M+ ++R ++ +
Sbjct: 41 LHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFY 100
Query: 342 --------CDNRT-----PLHASLSKNILSVHPLEI----------------LLKWGANV 372
+NR + + KNI ++ + I LL +GA++
Sbjct: 101 TLVAIKDAFNNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADI 160
Query: 373 NARDI-FGYSPIHIAALSELSQCVDCLIMHGADISS 407
N +D G + +H A ++ + + L+ +GA+++
Sbjct: 161 NMKDRHKGNTALHYATENKDQRLTELLLSYGANVNI 196
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 79.3 bits (195), Expect = 2e-15
Identities = 58/234 (24%), Positives = 107/234 (45%), Gaps = 10/234 (4%)
Query: 210 HETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMAD 269
+ + A+ +D + LL + INPN G+SP+ +A +K ++ G A
Sbjct: 2 DQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHG-AI 60
Query: 270 VDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKE-QIPLHLAAKCQSVECME 328
D+K + + LH A E G V+ + LL+ ++ +K+ PLHLA + ++ M+
Sbjct: 61 PDVKYPDIE-SELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMK 119
Query: 329 MLLRKGSQVNASDCDNRTPLH-ASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAA 387
+L+ +G+ + + D +PLH A + +I +E+L+ A ++ D G +P+ IA
Sbjct: 120 LLIARGADPDIPNTDKFSPLHLAVMMGDI---KGIELLIDHKACLDIEDCCGCTPLIIAM 176
Query: 388 LSELSQCVDCLIMHGADIS--SKTPSGSSALSIIMRNTPSSISSVRKK-LDSSI 438
L+ GA+I K ++ I N + K+ D +I
Sbjct: 177 AKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNI 230
Score = 68.9 bits (168), Expect = 3e-12
Identities = 50/159 (31%), Positives = 78/159 (49%), Gaps = 9/159 (5%)
Query: 155 LHLAAFNGSIKGCSWLMLHGHDIN--FTKDSYTPLHFAVLGNYVDCAKFLIKNKAHI--- 209
LH A G +K L+ G + F KD TPLH A + +D K LI A
Sbjct: 72 LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIP 131
Query: 210 ---HETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSG 266
+ +H AV + ++LL+ + ++ + G +PL IA +G I+ K +LDSG
Sbjct: 132 NTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSG 191
Query: 267 MADVDIKTKERRVTALHLAAENGYVECLRILLENHANCN 305
A++D K V AL A EN ++ +R+ ++ A+CN
Sbjct: 192 -ANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCN 229
Score = 66.6 bits (162), Expect = 2e-11
Identities = 67/299 (22%), Positives = 137/299 (45%), Gaps = 25/299 (8%)
Query: 217 AVSTNAVDCVQLLLSLQINPNVLNNKGV-SPLHIAADRGLISCLKAILDSGMADVDIKTK 275
A+ + ++LL+ P+V + S LH A + G + ++ +LD G D+ K
Sbjct: 42 AMKFRDSEAIKLLMKHGAIPDV-KYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYK 100
Query: 276 ERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGS 335
+ +T LHLA ++ +++L+ A+ + N + PLHLA ++ +E+L+ +
Sbjct: 101 DG-MTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKA 159
Query: 336 QVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQ-- 393
++ DC TPL +++K +++ ++LL GAN++ FG + +AAL +
Sbjct: 160 CLDIEDCCGCTPLIIAMAKGDIAI--CKMLLDSGANID---YFGKNG-CVAALCYAIENN 213
Query: 394 ---CVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSSISLQDPEASTKDI 450
V I GAD + + +I +I + + +++ + +A DI
Sbjct: 214 KIDIVRLFIKRGAD--------CNIMFMIE-GEECTILDMICNMCTNLESEAIDALIADI 264
Query: 451 ELKLNFKYILQNGPDGEIGMLKIFQNDGQKEILEHPLCEAFLYVKWEKMKKFYLFRLVL 509
+++ K ++ + M I + K++ E + E +K EK+ K + L +
Sbjct: 265 AIRI-HKKTIRRDEGFKNNMSTIEDKEEFKDVFEKCIIE-LRRIKSEKIGKKNILDLCI 321
Score = 41.9 bits (98), Expect = 0.001
Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 11/128 (8%)
Query: 123 TALLWCVFVKREDLLDALHQLGADL---SNDKYGALHLAAFNGSIKGCSWLMLHGHDINF 179
T L +K+ D++ L GAD + DK+ LHLA G IKG L+ H ++
Sbjct: 104 TPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDI 163
Query: 180 TKD-SYTPLHFAVLGNYVDCAKFLIKNKAHIHE-------TIVHSAVSTNAVDCVQLLLS 231
TPL A+ + K L+ + A+I + A+ N +D V+L +
Sbjct: 164 EDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIK 223
Query: 232 LQINPNVL 239
+ N++
Sbjct: 224 RGADCNIM 231
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 77.4 bits (191), Expect = 9e-15
Identities = 66/271 (24%), Positives = 114/271 (42%), Gaps = 57/271 (21%)
Query: 170 LMLHGHDINFTKDSY--TPLHFAVLGNYV-DCAKFLIKNKAHIHE------TIVH---SA 217
L+ G D+N + TPLH + D K LIK A ++ T +H S
Sbjct: 69 LLEAGADVN-APERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSG 127
Query: 218 VSTNAVDCVQLLLSLQINPNVLNNKGVSPLHI-----AADRGLISCLKAILDSGMADVDI 272
+ N ++LLL + N L+ G++PL + A+ + L+ ++D A D+
Sbjct: 128 FNINP-KVIRLLLRKGADVNALDLYGMTPLAVLLKSRNAN---VELLRLLID---AGADV 180
Query: 273 KTKE-RRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLL 331
+ R + LH ++ R + L+
Sbjct: 181 YAVDDRFRSLLHHHLQS---------------FKPRA----------------RIVRELI 209
Query: 332 RKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSEL 391
R G A+D TPLH+ + + + LL G ++NAR+ +G +P+H AA+
Sbjct: 210 RAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNN 269
Query: 392 SQCVDCLIMHGADISSKTPSGSSALSIIMRN 422
+ LI GADI++ + G++ LS+++RN
Sbjct: 270 PRACRRLIALGADINAVSSDGNTPLSLMVRN 300
Score = 75.8 bits (187), Expect = 2e-14
Identities = 63/230 (27%), Positives = 104/230 (45%), Gaps = 10/230 (4%)
Query: 219 STNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLK---AILDSGMADVDIKTK 275
S V+ V+ LL+ + N G +PLH+ +L++G ADV+ +
Sbjct: 23 SNVTVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAG-ADVNAPER 81
Query: 276 ERRVTALHLAAENGYVE-CLRILLENHANCNERNHKEQIPLH--LAAKCQSVECMEMLLR 332
T LHL N +++L++ A+ N ++ + PLH L+ + + + +LLR
Sbjct: 82 CG-FTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLR 140
Query: 333 KGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALS--E 390
KG+ VNA D TPL L +V L +L+ GA+V A D S +H S
Sbjct: 141 KGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKP 200
Query: 391 LSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSSISL 440
++ V LI G D ++ G++ L + + S V L + IS+
Sbjct: 201 RARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISI 250
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 73.3 bits (179), Expect = 2e-14
Identities = 59/181 (32%), Positives = 82/181 (45%), Gaps = 26/181 (14%)
Query: 212 TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAA-----DRGLISCLKAILDSG 266
+HSA S V+LLL+ + N + G +PLH+AA G I K +L++G
Sbjct: 75 LPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAG 134
Query: 267 -MADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVE 325
DV+ E T LH AA NG + + +LLE A+ N RN L AAK +E
Sbjct: 135 ADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIE 194
Query: 326 CMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHI 385
+++LL KG LH SL K L ANV+ R+I + + I
Sbjct: 195 LVKLLLDKG-------------LHLSLLKFNLEGVA-------NANVSKRNILNLTSLII 234
Query: 386 A 386
A
Sbjct: 235 A 235
Score = 52.1 bits (124), Expect = 2e-07
Identities = 52/205 (25%), Positives = 85/205 (41%), Gaps = 9/205 (4%)
Query: 246 PLHIAADRGLISCLKAILDSGMADVDIKTKERRV-TALHLAAENGYVECLRILLENHANC 304
L I + + +L + + K+ + L L E L L+ +
Sbjct: 8 LLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHL- 66
Query: 305 NERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEI 364
R+ ++PLH AA + +++LL G+ VNA D D TPLH + +E+
Sbjct: 67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEV 126
Query: 365 ---LLKWGA---NVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSI 418
LL+ GA N RD G +P+H AAL+ + V+ L+ GAD +S+ G +AL
Sbjct: 127 AKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDP 186
Query: 419 -IMRNTPSSISSVRKKLDSSISLQD 442
+ + K L+
Sbjct: 187 AAKNGRIELVKLLLDKGLHLSLLKF 211
Score = 49.4 bits (117), Expect = 2e-06
Identities = 49/220 (22%), Positives = 76/220 (34%), Gaps = 45/220 (20%)
Query: 65 ISDELSYKVCKESIRASLLEAMKMSSGD------VNVLYAIENSLYEPDEMATLFSKASQ 118
I+ + + L+ S + +L A S + A
Sbjct: 11 INKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARD 70
Query: 119 AEKTTALLWCVFVKREDLLDALHQLGADLS-NDKYG--ALHLAAFNGSIKGCSW----LM 171
+ L + ++ L GAD++ D G LHLAA NG+ + L+
Sbjct: 71 LDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLL 130
Query: 172 LHGH---DINFTKDS--YTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCV 226
L D+N +D TPLH+A L D + L++ A
Sbjct: 131 LEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGA------------------- 171
Query: 227 QLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSG 266
+PN N+ GV+ L AA G I +K +LD G
Sbjct: 172 --------DPNSRNSYGVTALDPAAKNGRIELVKLLLDKG 203
>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein. This family contains
Sodium, Potassium, Calcium ion channels. This family is
6 transmembrane helices in which the last two helices
flank a loop which determines ion selectivity. In some
sub-families (e.g. Na channels) the domain is repeated
four times, whereas in others (e.g. K channels) the
protein forms as a tetramer in the membrane. A bacterial
structure of the protein is known for the last two
helices but is not the Pfam family due to it lacking the
first four helices.
Length = 194
Score = 65.8 bits (161), Expect = 4e-12
Identities = 37/204 (18%), Positives = 76/204 (37%), Gaps = 26/204 (12%)
Query: 564 VWYVLALLATIELIRKIFGLVEYASFREYCSHVTNLFEWYMIISVFLISCVYTKRTYIWQ 623
+ YV ++ T+E++ K R+Y N+ ++ +++ L+S +
Sbjct: 2 LDYVFTVIFTLEMLLKFIA---LGFKRKYFRSPWNILDF-LVVLPSLVSLIL--FLLGED 55
Query: 624 NHVGAVAVLLGWSNLMGMIGQLPSVGTYVAMFSRVQLEFLKLFQAYICLLVGFTLTFCIV 683
+ + V LL L+ ++ + P + T + R L L + LL F + +
Sbjct: 56 SGLLRVLRLLRLLRLLRLLRRFPGLRTLLQSLGRSLKSLLNLLLLLLLLLFIFAIIGVQL 115
Query: 684 FPSEDR---------------FQNPIIGFINILVMMTGELNVNEVLLGTEAKPPVLLKGT 728
F E F + + + +T E + + +
Sbjct: 116 FGGELDKCCDKNENPINGNSNFDSYGEALLWLFRTLTTEGWGDVMYDTLVPGTVL----- 170
Query: 729 AHIVFTIFMLFVTVVLMNLLVGIA 752
I F IF++ V+L+NLL+G+
Sbjct: 171 GKIFFVIFIILGGVLLLNLLIGVI 194
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 61.2 bits (149), Expect = 2e-09
Identities = 98/625 (15%), Positives = 187/625 (29%), Gaps = 168/625 (26%)
Query: 234 INPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRV----TALHLAAENG 289
+N N + G S L +AA L +L R T LH +
Sbjct: 43 LNINCPDRLGRSALFVAAIENENLELTELL---------LNLSCRGAVGDTLLHAISLEY 93
Query: 290 YV---ECLRILLENH----------ANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQ 336
L LL LHLAA Q+ E +++LL +G+
Sbjct: 94 VDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGAS 153
Query: 337 VNASDCDN---RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQ 393
V A C + ++ S G SP++ AA
Sbjct: 154 VPARACGDFFVKSQGVDSFY------------------------HGESPLNAAACLGSPS 189
Query: 394 CVDCLIMHGADISSKTPSGSS---ALSIIMRNTPSSISSVRKKLDSSISLQDPEASTKDI 450
V L ADI + G++ L + + + ++SL D +K++
Sbjct: 190 IVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKEL 249
Query: 451 ELKLNFKYILQNGPDGEIGMLKIFQ-----NDGQKEILEHPLCEA--------------- 490
E+ LN + + + G + +F+ QK+ + P +
Sbjct: 250 EVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQKKFVAWPNGQQLLSLYWLEELDGWRR 309
Query: 491 -------------------------------FLYVKWEKMKKFYLFRLVLSSIFVLVLSV 519
KW+ KF S ++ L
Sbjct: 310 KQSVLELIVVFVIGLKFPELSDMYLIAPLSRLGQFKWKPFIKFIFH--SASYLYFL---- 363
Query: 520 YVLTTLAQDCYNASKN-----ITLFTPTFCTKNSEIGHFLLRNPDFMETVWYVLALL-AT 573
Y++ + Y ++ TP + + D + L L
Sbjct: 364 YLIIFTSVAYYRPTRTDLRVTGLQQTPLEMLIVTWV--------DGLRLGEEKLIWLGGI 415
Query: 574 IELIRKIFGLVEYASFREY-CSHVTNLFEWYMIISVFLISCVYTKRTYIWQNHVGAV--- 629
E I +++ ++++ Y + + F + FL+ + R + +
Sbjct: 416 FEYIHQLWNILDFGMNSFYLATFLDRPFAILFVTQAFLVLREHWLR---FDPTLIEEALF 472
Query: 630 --AVLLGWSNLMGMIGQLPSVGTYVAMFSRVQL-EFLKLFQAYICLLVGFTLTFCIVFPS 686
A++L W NL+ + +G M R+ L + L+ Y +L GF ++
Sbjct: 473 AFALVLSWLNLLYIFRGNQHLGPLQIMIGRMILGDILRFLFIYAVVLFGFACGLNQLYQY 532
Query: 687 EDR-----FQNPIIG--------FINIL---------VMMTGELNVNEVLLGTEAKPPVL 724
D NP + + ++ G+L A
Sbjct: 533 YDELKLNECSNPHARSCEKQGNAYSTLFETSQELFWAIIGLGDL---------LANEHKF 583
Query: 725 LKGTAHIVFTIFMLFVTVVLMNLLV 749
+ ++F + + + ++L+N+L+
Sbjct: 584 TEFVGLLLFGAYNVIMYILLLNMLI 608
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 51.9 bits (125), Expect = 9e-09
Identities = 19/54 (35%), Positives = 32/54 (59%)
Query: 278 RVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLL 331
TALH AA +G +E ++ LLE + N + LH+AA+ ++E +++LL
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 45.3 bits (108), Expect = 2e-06
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 152 YGALHLAAFNGSIKGCSWLMLHGHDIN-FTKDSYTPLHFAVLGNYVDCAKFLI 203
ALH AA +G ++ +L+ G DIN +D T LH A ++ K L+
Sbjct: 2 RTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 45.3 bits (108), Expect = 2e-06
Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 243 GVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILL 298
G + LH AA G + +K +L+ G D++ ++ TALH+AAENG +E L++LL
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKG-VDINRTDEDGN-TALHIAAENGNLEVLKLLL 54
Score = 42.6 bits (101), Expect = 2e-05
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 210 HETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAIL 263
T +H A + ++ V+ LL ++ N + G + LHIAA+ G + LK +L
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 39.5 bits (93), Expect = 2e-04
Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 184 YTPLHFAVLGNYVDCAKFLIKNKAHIH------ETIVHSAVSTNAVDCVQLLL 230
T LH A + ++ K+L++ I+ T +H A ++ ++LLL
Sbjct: 2 RTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 37.2 bits (87), Expect = 0.001
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 344 NRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLI 399
RT LH + L + ++ LL+ G ++N D G + +HIAA + + + L+
Sbjct: 1 GRTALHKAAISGRLEL--VKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 35.3 bits (82), Expect = 0.007
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 122 TTALLWCVFVKREDLLDALHQLGADLSN-DKYG--ALHLAAFNGSIKGCSWL 170
TAL R +L+ L + G D++ D+ G ALH+AA NG+++ L
Sbjct: 2 RTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53
Score = 33.8 bits (78), Expect = 0.026
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 314 PLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILL 366
LH AA +E ++ LL KG +N +D D T LH + ++ L++LL
Sbjct: 4 ALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENG--NLEVLKLLL 54
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 45.8 bits (109), Expect = 1e-06
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 297 LLEN-HANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLH 349
LLE+ + N + PLHLAAK ++E ++ LL+ G +N D D T L
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALD 54
Score = 45.0 bits (107), Expect = 3e-06
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 276 ERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLA 318
T LHLAA+ G +E ++ LL+ + N R+ L LA
Sbjct: 14 GNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 38.9 bits (91), Expect = 4e-04
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 233 QINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLA 285
I+ N + G +PLH+AA G + ++ +L G D++++ + TAL LA
Sbjct: 6 PIDLNATDGNGNTPLHLAAKYGALELVQWLLKPG-VDLNLRDSDGL-TALDLA 56
Score = 38.1 bits (89), Expect = 8e-04
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 330 LLRKGSQ-VNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIA 386
LL G +NA+D + TPLH + L + ++ LLK G ++N RD G + + +A
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALEL--VQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 36.9 bits (86), Expect = 0.002
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 211 ETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIA 250
T +H A A++ VQ LL ++ N+ ++ G++ L +A
Sbjct: 17 NTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 34.6 bits (80), Expect = 0.011
Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 140 LHQLGADLSNDKYG----ALHLAAFNGSIKGCSWLMLHGHDIN-FTKDSYTPLHFA 190
L + G N G LHLAA G+++ WL+ G D+N D T L A
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 34.6 bits (80), Expect = 0.013
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 370 ANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSI 418
++NA D G +P+H+AA + V L+ G D++ + G +AL +
Sbjct: 7 IDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDL 55
Score = 33.5 bits (77), Expect = 0.030
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 173 HGHDINFTKD--SYTPLHFAVLGNYVDCAKFLIKNKAHIH 210
HG D TPLH A ++ ++L+K ++
Sbjct: 4 HGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLN 43
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities. Repeats 13-24 are especially active,
with known sites of interaction for the Na/K ATPase,
Cl/HCO(3) anion exchanger, voltage-gated sodium channel,
clathrin heavy chain and L1 family cell adhesion
molecules. The ANK repeats are found to form a
contiguous spiral stack such that ion transporters like
the anion exchanger associate in a large central cavity
formed by the ANK repeat spiral, while clathrin and cell
adhesion molecules associate with specific regions
outside this cavity.
Length = 33
Score = 44.5 bits (106), Expect = 2e-06
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 280 TALHLAAENGYVECLRILLENHANCNERNH 309
T LHLAA NG++E +++LLE A+ N R+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNARDK 33
Score = 38.7 bits (91), Expect = 3e-04
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 314 PLHLAAKCQSVECMEMLLRKGSQVNASD 341
PLHLAA+ +E +++LL G+ VNA D
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNARD 32
Score = 36.4 bits (85), Expect = 0.002
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 184 YTPLHFAVLGNYVDCAKFLIKNKAHIH 210
TPLH A +++ K L++ A ++
Sbjct: 3 NTPLHLAARNGHLEVVKLLLEAGADVN 29
Score = 36.4 bits (85), Expect = 0.002
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 242 KGVSPLHIAADRGLISCLKAILDSGMADVDIKTK 275
G +PLH+AA G + +K +L++G ADV+ + K
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLEAG-ADVNARDK 33
Score = 35.2 bits (82), Expect = 0.004
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 379 GYSPIHIAALSELSQCVDCLIMHGADISSKT 409
G +P+H+AA + + V L+ GAD++++
Sbjct: 2 GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32
Score = 32.5 bits (75), Expect = 0.034
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 343 DNRTPLHASLSKNILSVHPLEILLKWGANVNARD 376
D TPLH + L V +++LL+ GA+VNARD
Sbjct: 1 DGNTPLHLAARNGHLEV--VKLLLEAGADVNARD 32
Score = 30.6 bits (70), Expect = 0.16
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 211 ETIVHSAVSTNAVDCVQLLLSLQINPNVLNN 241
T +H A ++ V+LLL + N +
Sbjct: 3 NTPLHLAARNGHLEVVKLLLEAGADVNARDK 33
Score = 29.8 bits (68), Expect = 0.35
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 154 ALHLAAFNGSIKGCSWLMLHGHDIN 178
LHLAA NG ++ L+ G D+N
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVN 29
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 48.7 bits (116), Expect = 1e-05
Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 16/150 (10%)
Query: 259 LKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLA 318
LKA LD + D +K R T LH+AA GY +C+ +LL++ N + R+ L A
Sbjct: 545 LKAKLDPDIGD----SKGR--TPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNA 598
Query: 319 AKCQSVECMEMLLRKGSQVN---ASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNAR 375
+ + +L S + A D L + +N L+ ++ LLK G NV++
Sbjct: 599 ISAKHHKIFRILYHFASISDPHAAGDL-----LCTAAKRNDLTA--MKELLKQGLNVDSE 651
Query: 376 DIFGYSPIHIAALSELSQCVDCLIMHGADI 405
D G + + +A + V LIM+GAD+
Sbjct: 652 DHQGATALQVAMAEDHVDMVRLLIMNGADV 681
Score = 47.6 bits (113), Expect = 3e-05
Identities = 40/146 (27%), Positives = 75/146 (51%), Gaps = 6/146 (4%)
Query: 229 LLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAEN 288
LL +++P++ ++KG +PLHIAA +G C+ +L +V I+ TAL A
Sbjct: 544 LLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHA-CNVHIRDANGN-TALWNAISA 601
Query: 289 GYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPL 348
+ + RIL + + H L AAK + M+ LL++G V++ D T L
Sbjct: 602 KHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATAL 659
Query: 349 HASLSKNILSVHPLEILLKWGANVNA 374
+++++ + + + +L+ GA+V+
Sbjct: 660 QVAMAEDHVDM--VRLLIMNGADVDK 683
Score = 42.9 bits (101), Expect = 8e-04
Identities = 35/143 (24%), Positives = 68/143 (47%), Gaps = 17/143 (11%)
Query: 185 TPLHFAVLGNYVDCAKFLIKNKAHIH------ETIVHSAVSTNAVDCVQLL--LSLQINP 236
TPLH A Y DC L+K+ ++H T + +A+S ++L + +P
Sbjct: 560 TPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDP 619
Query: 237 NVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERR-VTALHLAAENGYVECLR 295
+ L AA R ++ +K +L G+ ++ +++ + TAL +A +V+ +R
Sbjct: 620 HA----AGDLLCTAAKRNDLTAMKELLKQGL---NVDSEDHQGATALQVAMAEDHVDMVR 672
Query: 296 ILLENHANCNERN-HKEQIPLHL 317
+L+ N A+ ++ N + P L
Sbjct: 673 LLIMNGADVDKANTDDDFSPTEL 695
Score = 38.7 bits (90), Expect = 0.016
Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 33/127 (25%)
Query: 327 MEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPI--- 383
+E LL+ + D RTPLH + SK + +LLK NV+ RD G + +
Sbjct: 541 LEELLKAKLDPDIGDSKGRTPLHIAASKGYEDC--VLVLLKHACNVHIRDANGNTALWNA 598
Query: 384 -------------HIAALSELSQCVD--C-------------LIMHGADISSKTPSGSSA 415
H A++S+ D C L+ G ++ S+ G++A
Sbjct: 599 ISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATA 658
Query: 416 LSIIMRN 422
L + M
Sbjct: 659 LQVAMAE 665
Score = 29.8 bits (67), Expect = 7.5
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Query: 119 AEKTTALLWCVFVKREDLLDALHQLGADLSNDKYGA--LHLAAFNGSIKGCSWLMLHGHD 176
A TAL + K + L+ A +S+ L AA + L+ G +
Sbjct: 589 ANGNTALWNAISAKHHKIFRILYHF-ASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLN 647
Query: 177 INFT-KDSYTPLHFAVLGNYVDCAKFLIKNKAHI 209
++ T L A+ ++VD + LI N A +
Sbjct: 648 VDSEDHQGATALQVAMAEDHVDMVRLLIMNGADV 681
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 48.4 bits (115), Expect = 2e-05
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 283 HLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDC 342
LAA V RILL A+ N R++ + PLH+A V+ + +LL G+ D
Sbjct: 88 QLAASGDAVG-ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDK 146
Query: 343 DNRTPL 348
D +TPL
Sbjct: 147 DGKTPL 152
Score = 44.1 bits (104), Expect = 3e-04
Identities = 36/132 (27%), Positives = 55/132 (41%), Gaps = 14/132 (10%)
Query: 316 HLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNAR 375
LAA +V +LL G+ N D D RTPLH + + + V + +LL++GA+
Sbjct: 88 QLAASGDAVG-ARILLTGGADPNCRDYDGRTPLHIACANGHVQV--VRVLLEFGADPTLL 144
Query: 376 DIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKL- 434
D G +P+ +A + + V L H + P S + L
Sbjct: 145 DKDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAK----------PDSFTGKPPSLE 194
Query: 435 DSSISLQDPEAS 446
DS IS P+ S
Sbjct: 195 DSPISSHHPDFS 206
Score = 41.4 bits (97), Expect = 0.002
Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 215 HSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKT 274
A S +AV ++LL+ +PN + G +PLHIA G + ++ +L+ G AD +
Sbjct: 88 QLAASGDAVG-ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFG-ADPTLLD 145
Query: 275 KERRVTALHLAAENGYVECLRILLENHANCN 305
K+ + T L LA ENG+ E +++L H+ C+
Sbjct: 146 KDGK-TPLELAEENGFREVVQLLS-RHSQCH 174
Score = 39.5 bits (92), Expect = 0.008
Identities = 31/99 (31%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 234 INPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVEC 293
I+P V + V +AA + IL +G AD + + + R T LH+A NG+V+
Sbjct: 74 IDPVVAHMLTVELCQLAASGDAVGA--RILLTGGADPNCRDYDGR-TPLHIACANGHVQV 130
Query: 294 LRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLR 332
+R+LLE A+ + + PL LA + E +++L R
Sbjct: 131 VRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSR 169
>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional.
Length = 764
Score = 48.0 bits (114), Expect = 2e-05
Identities = 49/215 (22%), Positives = 97/215 (45%), Gaps = 22/215 (10%)
Query: 223 VDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISC--LKAILDSGMADVDIK--TKERR 278
+D ++ L + +N N+ NN ++PLH G + +K I++ G D+D+K
Sbjct: 192 IDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELG-GDMDMKCVNGMSP 250
Query: 279 VTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLA-AKCQSVECMEMLLRKGSQV 337
+ + +N E I +E+ +N + ++ A+ + + L+ G ++
Sbjct: 251 IMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKL 310
Query: 338 NASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELS----- 392
+ D RT LH + ++ +S +++L ++G ++N D G + +H LS LS
Sbjct: 311 HYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLH-TYLSMLSVVNIL 369
Query: 393 ----------QCVDCLIMHGADISSKTPSGSSALS 417
+ CLI GADI++ G + L+
Sbjct: 370 DPETDNDIRLDVIQCLISLGADITAVNCLGYTPLT 404
>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional.
Length = 446
Score = 43.9 bits (103), Expect = 3e-04
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 297 LLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNI 356
LL + NE + PLH+A+K + + MLL G+ NA D ++TPL+ +
Sbjct: 58 LLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDD 117
Query: 357 LSVHPLEILLKWGANVN 373
+ + +L+++GA +N
Sbjct: 118 EVIERINLLVQYGAKIN 134
Score = 42.0 bits (98), Expect = 0.001
Identities = 53/235 (22%), Positives = 105/235 (44%), Gaps = 8/235 (3%)
Query: 213 IVHSAVSTNAVD--CVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADV 270
I+H+ +D V+ LL +PN ++ G PLHIA+ + +L G AD
Sbjct: 40 ILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHG-ADP 98
Query: 271 DIKTKERRVTALHLAA-ENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEM 329
+ K+ + +L+ ++ +E + +L++ A N +E LA S +
Sbjct: 99 NACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKK 158
Query: 330 LLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALS 389
++ G + D + +H L + + ++K G + + D G +P+HI S
Sbjct: 159 IMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVC-S 217
Query: 390 ELSQCVDC--LIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSSISLQD 442
+ + VD L++ D++ + G S L+++++ T S + K L +S + D
Sbjct: 218 KTVKNVDIINLLLPSTDVNKQNKFGDSPLTLLIK-TLSPAHLINKLLSTSNVITD 271
Score = 37.7 bits (87), Expect = 0.026
Identities = 45/166 (27%), Positives = 74/166 (44%), Gaps = 19/166 (11%)
Query: 150 DKYGA----LHLAAFNGSIKGCSWLMLHGHDINFTK---DSYTPLHFAVLGNYVDCAKFL 202
DK+G HL + N SW+M G I+ +K D TPLH C+K
Sbjct: 170 DKFGKNHIHRHLMSDNPKASTISWMMKLG--ISPSKPDHDGNTPLHIV-------CSK-T 219
Query: 203 IKNKAHIHETIVHSAVSTNAV--DCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLK 260
+KN I+ + + V+ D LL ++P L NK +S ++ D+ + C+
Sbjct: 220 VKNVDIINLLLPSTDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIF 279
Query: 261 AILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNE 306
D + ++ K K+ T +A E G + C++ LL+N C +
Sbjct: 280 YDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDIICED 325
>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional.
Length = 494
Score = 44.0 bits (104), Expect = 3e-04
Identities = 87/429 (20%), Positives = 176/429 (41%), Gaps = 59/429 (13%)
Query: 164 IKGCSWLMLHGHDINFTKDSYTPLHFAVLGNYV--DCAKFLIKNKAHIH-----ETIVHS 216
+L+ G D+N + L + V K LI N A ++ ET + +
Sbjct: 16 KNALEFLLRTGFDVNEEYRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKGYIETPLCA 75
Query: 217 AVSTNAVD------CVQLLLSLQINPNVLNNKGVSPL-------HIAADRGLISCLKAIL 263
+ + V+LLL + N+ GVSP+ +I L+ +L
Sbjct: 76 VLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINN----CDMLRFLL 131
Query: 264 DSGMADVDIKTKERRVTALHLAAENGYV--ECLRILLENHANCNER-NHKEQIPLHL--- 317
G+ D+K R LH+ E+ V + ++ILL N E+ + P+++
Sbjct: 132 SKGINVNDVKN-SRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLR 190
Query: 318 -AAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKN-ILSVHPLEIL---LKWGANV 372
S++ ++ L++KG + ++ + + L + L N ILS ++L LK+ +
Sbjct: 191 NDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKY-IKI 249
Query: 373 NARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRK 432
N +D G++P+ I+A + + + L+ G DI + + G + L+ +++ +I + +
Sbjct: 250 NKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKH--GNIDMLNR 307
Query: 433 KLDSSISLQDPEASTKDIELKLNFKYILQNGPDGEIGMLKIFQNDGQKEILEHPLCEAFL 492
L + +K F+Y ++G + +F N+ + ++ + +F
Sbjct: 308 IL---------QLKPGKYLIKKTFEYFSEHGIND------LFFNEKKMLMMILLMQYSFT 352
Query: 493 YVKWEKMKKFYLFRLVLSSIFVLVLSVYVLTTLAQDCYNASKNITLFTPTFCTKNSEIGH 552
+ K Y RL +I + Y L KN++++ F + I
Sbjct: 353 -IYPIFYKNCYEVRLAFPNI----IERYEKDLLLMKKETVGKNLSVYDLVFNREKEIIPV 407
Query: 553 FLLRNPDFM 561
L+N +F+
Sbjct: 408 KFLKNENFL 416
>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional.
Length = 300
Score = 43.0 bits (101), Expect = 4e-04
Identities = 34/123 (27%), Positives = 59/123 (47%), Gaps = 6/123 (4%)
Query: 203 IKNKAHIHET-IVHSAVSTNAVDCVQLLLSLQINPNVLN----NKGVSPLHIAADRGLIS 257
IK K I I++S++ + D + +L L +P N +PL A D
Sbjct: 25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDD 84
Query: 258 CLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHL 317
K ++ G ADV+ +E ++T L+++ +G ++CL ILL A+ N + + P+ L
Sbjct: 85 AAKLLIRYG-ADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIEL 143
Query: 318 AAK 320
A
Sbjct: 144 ALM 146
Score = 29.2 bits (65), Expect = 9.4
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 314 PLHLAAKCQSVECMEMLLRKGSQVNA-SDCDNRTPLHASLSKNILSVHPLEILLKWGANV 372
PL A C + + ++L+R G+ VN ++ TPL+ S+ L LEILL +GA++
Sbjct: 73 PLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKC--LEILLSYGADI 130
Query: 373 NARDIFGYSPIHIAAL 388
N + +PI +A +
Sbjct: 131 NIQTNDMVTPIELALM 146
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 37.2 bits (87), Expect = 7e-04
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 280 TALHLAAENGYVECLRILLENHANCNE 306
T LHLAAENG +E +++LL+ A+ N
Sbjct: 4 TPLHLAAENGNLEVVKLLLDKGADINA 30
Score = 32.2 bits (74), Expect = 0.041
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 182 DSYTPLHFAVLGNYVDCAKFLIKNKAHIHE 211
D TPLH A ++ K L+ A I+
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGADINA 30
Score = 31.0 bits (71), Expect = 0.10
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 314 PLHLAAKCQSVECMEMLLRKGSQVNA 339
PLHLAA+ ++E +++LL KG+ +NA
Sbjct: 5 PLHLAAENGNLEVVKLLLDKGADINA 30
Score = 31.0 bits (71), Expect = 0.11
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 242 KGVSPLHIAADRGLISCLKAILDSGMADVDI 272
G +PLH+AA+ G + +K +LD G AD++
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKG-ADINA 30
Score = 29.5 bits (67), Expect = 0.38
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 379 GYSPIHIAALSELSQCVDCLIMHGADI 405
G +P+H+AA + + V L+ GADI
Sbjct: 2 GRTPLHLAAENGNLEVVKLLLDKGADI 28
Score = 28.7 bits (65), Expect = 0.83
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 212 TIVHSAVSTNAVDCVQLLLSLQINPNV 238
T +H A ++ V+LLL + N
Sbjct: 4 TPLHLAAENGNLEVVKLLLDKGADINA 30
>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional.
Length = 209
Score = 41.0 bits (96), Expect = 0.001
Identities = 33/147 (22%), Positives = 62/147 (42%), Gaps = 7/147 (4%)
Query: 280 TALHLAAENGYV--ECLRILLENHANCNERNHKEQI-PLHLAA---KCQSVECMEMLLRK 333
T + E V E L+ L+EN A+ N + + LH K E +++L+
Sbjct: 53 TPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDS 112
Query: 334 GSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQ 393
GS + D D + LH + + ++ +++L+ G + +D + ++ L +
Sbjct: 113 GSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDK 172
Query: 394 -CVDCLIMHGADISSKTPSGSSALSII 419
D L G DI+ SG + +I
Sbjct: 173 KIFDFLTSLGIDINETNKSGYNCYDLI 199
Score = 34.4 bits (79), Expect = 0.16
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 12/111 (10%)
Query: 337 VNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDI-FGYSPIHIAALSELS--- 392
VN + TP+ + L K+ ++V L+ L++ GA+VN + S +H LS
Sbjct: 44 VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALH----HYLSFNK 99
Query: 393 ----QCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSSIS 439
+ + LI G+ I+ + G + L + M N I+ ++ +DS +S
Sbjct: 100 NVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVS 150
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities.
Length = 30
Score = 34.9 bits (81), Expect = 0.005
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 280 TALHLAAENGYVECLRILLENHANCN 305
T LHLAA NG +E +++LLE+ A+ N
Sbjct: 4 TPLHLAARNGNLELVKLLLEHGADIN 29
Score = 31.1 bits (71), Expect = 0.14
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 184 YTPLHFAVLGNYVDCAKFLIKNKAHIH 210
TPLH A ++ K L+++ A I+
Sbjct: 3 NTPLHLAARNGNLELVKLLLEHGADIN 29
Score = 30.7 bits (70), Expect = 0.18
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 378 FGYSPIHIAALSELSQCVDCLIMHGADI 405
G +P+H+AA + + V L+ HGADI
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHGADI 28
Score = 29.1 bits (66), Expect = 0.54
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 314 PLHLAAKCQSVECMEMLLRKGSQVNA 339
PLHLAA+ ++E +++LL G+ +NA
Sbjct: 5 PLHLAARNGNLELVKLLLEHGADINA 30
Score = 27.2 bits (61), Expect = 2.8
Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 242 KGVSPLHIAADRGLISCLKAILDSGMADVDI 272
G +PLH+AA G + +K +L+ G AD++
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLEHG-ADINA 30
>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional.
Length = 154
Score = 37.9 bits (88), Expect = 0.006
Identities = 12/30 (40%), Positives = 25/30 (83%), Gaps = 1/30 (3%)
Query: 362 LEILLKWGANVNARD-IFGYSPIHIAALSE 390
L++L++WGA++N ++ +FG +P+HIA ++
Sbjct: 74 LKLLMEWGADINGKERVFGNTPLHIAVYTQ 103
Score = 33.3 bits (76), Expect = 0.22
Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 14/111 (12%)
Query: 240 NNKGVSPLHIAADRGLI---SCLKAILDSGMADVDIKTKERRV--TALHLAAENGYVECL 294
N G +HI ++ LK +++ G DI KER T LH+A E
Sbjct: 52 NRHGKQCVHIVSNPDKADPQEKLKLLMEWG---ADINGKERVFGNTPLHIAVYTQNYELA 108
Query: 295 RILLEN-HANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
L N N+ + P ++A + + M +L KG+Q C
Sbjct: 109 TWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQ-----CKV 154
Score = 31.0 bits (70), Expect = 1.3
Identities = 22/92 (23%), Positives = 31/92 (33%), Gaps = 28/92 (30%)
Query: 164 IKGCSWLMLHGHDINF--TKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTN 221
+ LM G DIN TPLH AV + A +L
Sbjct: 71 QEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWL------------------- 111
Query: 222 AVDCVQLLLSLQINPNVLNNKGVSPLHIAADR 253
C Q +N +LN +P ++A +R
Sbjct: 112 ---CNQ----PGVNMEILNYAFKTPYYVACER 136
>gnl|CDD|222925 PHA02743, PHA02743, Viral ankyrin protein; Provisional.
Length = 166
Score = 35.6 bits (82), Expect = 0.038
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 6/97 (6%)
Query: 300 NHANCNERNHKEQIPLHLAAKCQSV-ECMEM---LLRKGSQVNASDCDNRTPLH-ASLSK 354
N+ E + EQ + ++ E ME+ + G ++ D R H +
Sbjct: 9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYD 68
Query: 355 NILSVHPLEILLKWGANVNARDI-FGYSPIHIAALSE 390
+V +E+L+ GA++NAR++ G + +HIAA ++
Sbjct: 69 RANAVMKIELLVNMGADINARELGTGNTLLHIAASTK 105
>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional.
Length = 489
Score = 36.0 bits (83), Expect = 0.083
Identities = 34/144 (23%), Positives = 66/144 (45%), Gaps = 9/144 (6%)
Query: 323 SVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEI---LLKWGANVNARDIFG 379
S + +++ + G+ VN D + TPL LS H L+I L++ GA++N ++ G
Sbjct: 50 STDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDG 109
Query: 380 YSPI----HIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMR-NTPSSISSVRKKL 434
+P+ ++ L + + +I +GAD + G + L + ++ N I ++ L
Sbjct: 110 ETPLYCLLSNGYINNL-EILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLL 168
Query: 435 DSSISLQDPEASTKDIELKLNFKY 458
+ + + K L FKY
Sbjct: 169 EKGVDINTHNNKEKYDTLHCYFKY 192
Score = 34.0 bits (78), Expect = 0.38
Identities = 25/99 (25%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 291 VECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLL---RKGSQVNASDCDNRTP 347
++ ++IL+EN A+ N++N + PL+ + +E+LL G+ D D T
Sbjct: 89 LDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTM 148
Query: 348 LHASL-SKNILSVHPLEILLKWGANVNA-RDIFGYSPIH 384
L L S + + + +++LL+ G ++N + Y +H
Sbjct: 149 LQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLH 187
Score = 30.6 bits (69), Expect = 4.3
Identities = 46/216 (21%), Positives = 98/216 (45%), Gaps = 29/216 (13%)
Query: 222 AVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAIL---DSGMADVDIKTKERR 278
+D V++L+ + N N+ G +PL+ G I+ L+ +L ++G AD + K+
Sbjct: 88 MLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENG-ADTTLLDKDG- 145
Query: 279 VTALHLAAENGY---VECLRILLENHANCNERNHKEQI-PLHLAAK----CQSVECMEML 330
T L + ++ + +E +++LLE + N N+KE+ LH K + +++
Sbjct: 146 FTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLF 205
Query: 331 LRKGSQVNASDCDNRTPL----------HASLSKNILSVHPLEILLKWGANVNARDIFGY 380
+ G +N + ++ + KNIL + + + ++N D G+
Sbjct: 206 VDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNIL-----DFIFSY-IDINQVDELGF 259
Query: 381 SPIHIAALSELSQCVDCLIMHGADISSKTPSGSSAL 416
+P++ + + + L+ G DI+ T G++ L
Sbjct: 260 NPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCL 295
>gnl|CDD|233428 TIGR01473, cyoE_ctaB, protoheme IX farnesyltransferase. This model
describes protoheme IX farnesyltransferase, also called
heme O synthase, an enzyme that creates an intermediate
in the biosynthesis of heme A. Prior to the description
of its enzymatic function, this protein was often called
a cytochrome o ubiquinol oxidase assembly factor
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Heme, porphyrin, and cobalamin].
Length = 280
Score = 32.6 bits (75), Expect = 0.67
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 10/68 (14%)
Query: 596 VTNLFEWYMIISVFLISCVYT---KRTYIWQNHV-----GAVAVLLGWSNLMGMIGQLPS 647
V L + +F VYT KR N V GAV L+GW+ + G I L +
Sbjct: 103 VNPLAALLGLFGIFFYVIVYTIWLKRRTPQ-NTVIGGFAGAVPPLIGWAAVTGSIS-LGA 160
Query: 648 VGTYVAMF 655
+ +F
Sbjct: 161 WLLFAIIF 168
>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional.
Length = 169
Score = 31.6 bits (71), Expect = 0.87
Identities = 34/153 (22%), Positives = 56/153 (36%), Gaps = 22/153 (14%)
Query: 194 NYVDCAKFLIKNKAHIHETIVHSAVSTNAV------------DCVQLLLSLQINPNVLNN 241
+++ C + +I K E H A DC L N ++
Sbjct: 5 HFMTCLEEMIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAAL------NATDD 58
Query: 242 KGVSPLHIAA---DRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILL 298
G +HIAA + L + + L AD++ + TALHLAA + L
Sbjct: 59 AGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLC 118
Query: 299 -ENHANCNERNHKEQIPLHLAAKCQSVECMEML 330
+ + + N + P LA + V M++L
Sbjct: 119 CQPGIDLHFCNADNKSPFELAIDNEDVAMMQIL 151
>gnl|CDD|223187 COG0109, CyoE, Polyprenyltransferase (cytochrome oxidase assembly
factor) [Posttranslational modification, protein
turnover, chaperones].
Length = 304
Score = 32.2 bits (74), Expect = 1.0
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 10/68 (14%)
Query: 596 VTNLFEWYMIISVFLISCVYT---KRTYIWQNHV-----GAVAVLLGWSNLMGMIGQLPS 647
V L + +F VYT KR QN V GA+ L+GW+ + G I L +
Sbjct: 120 VNLLAAVLGLFGIFFYVVVYTLWLKRRT-PQNIVIGGFAGAMPPLIGWAAVTGSIS-LGA 177
Query: 648 VGTYVAMF 655
+ + +F
Sbjct: 178 ILLFAIIF 185
>gnl|CDD|233132 TIGR00800, ncs1, NCS1 nucleoside transporter family. The
Nucleobase:Cation Symporter-1 (NCS1) Family (TC 2.A.39)
The NCS1 family consists of bacterial and yeast
transporters for nucleobases including purines and
pyrimidines. Members of this family possess twelve
putative transmembrane a-helical spanners (TMSs). At
least some of them have been shown to function in uptake
by substrate:H+ symport mechanism [Transport and binding
proteins, Nucleosides, purines and pyrimidines].
Length = 442
Score = 31.6 bits (72), Expect = 2.1
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 19/101 (18%)
Query: 595 HVTNLFEWY---MIISVFLISCVYTKRTY-------IWQNHVGAVAVLLGWSNLMGMIGQ 644
+ +LFEW + F + + + + G+ L +IG
Sbjct: 160 KIRHLFEWLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGS 219
Query: 645 LPSVGTYVAMFSRVQLEFLK-----LFQAYICLLVGFTLTF 680
+ T F+R F K ++ ++ L GFTLT
Sbjct: 220 FATWATNAPDFTR----FGKSKKTAIWGQFLALPGGFTLTC 256
>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional.
Length = 284
Score = 31.2 bits (70), Expect = 2.2
Identities = 19/83 (22%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 279 VTALHLAAENGYVECLRILLENHANCNERNHKEQIP-LHLAAKCQSVECMEMLLRKGSQV 337
++ +H+ +NG+V+ + +LL+ + N N IP + LA + +E ++ L + +
Sbjct: 161 LSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINI 220
Query: 338 NASDCDNRTPLHASLSKNILSVH 360
+ + +N A ++K I+ H
Sbjct: 221 YSVNLENVLLDDAEIAKMIIEKH 243
>gnl|CDD|237003 PRK11860, PRK11860, bifunctional 3-phosphoshikimate
1-carboxyvinyltransferase/cytidine monophosphate kinase;
Provisional.
Length = 661
Score = 31.6 bits (72), Expect = 2.3
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 135 DLLDALHQLGAD---LSNDKYGALHL 157
DL+DAL QLG D L N+ + L +
Sbjct: 128 DLVDALRQLGCDIDYLGNEGFPPLRI 153
>gnl|CDD|235644 PRK05911, PRK05911, RNA polymerase sigma factor sigma-28; Reviewed.
Length = 257
Score = 30.7 bits (69), Expect = 3.1
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 36 STKKAMFNQLNDEKPTMVDNMRTDSLEETISDELS---YKVCKE----SIRASLLEAMKM 88
S + A+ LN+E P D+ +LEE I+DE + Y V + SI A + A++
Sbjct: 149 SARPALILSLNEEFPCQSDDEAGLALEERIADERAETGYDVVDKKEFSSILAEAILALEE 208
Query: 89 SSGDVNVLYAIEN 101
V LY E
Sbjct: 209 KERKVMALYYYEE 221
>gnl|CDD|151413 pfam10966, DUF2768, Protein of unknown function (DUF2768). This
family of proteins with unknown function appear to be
restricted to Bacillus spp.
Length = 58
Score = 27.3 bits (61), Expect = 4.9
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 635 WSNLMGMIGQLPSVGT-YVAMF--SRVQLEFLKLFQAYICLLVGFTLTFCIVF 684
W + M SVGT Y++ + L+F+ AYI +LV + F +VF
Sbjct: 3 WFSFGSMGLMFISVGTIYLSRYKLKNKFLKFIVALVAYILMLVSGIIVFYVVF 55
>gnl|CDD|173891 cd06903, lectin_EMP46_EMP47, EMP46 and EMP47 type 1 transmembrane
proteins, N-terminal lectin domain. EMP46 and EMP47,
N-terminal carbohydrate recognition domain. EMP46 and
EMP47 are fungal type-I transmembrane proteins that
cycle between the endoplasmic reticulum and the golgi
apparatus and are thought to function as cargo receptors
that transport newly synthesized glycoproteins. EMP47
is a receptor for EMP46 responsible for the selective
transport of EMP46 by forming hetero-oligomerization
between the two proteins. EMP46 and EMP47 have an
N-terminal lectin-like carbohydrate recognition domain
(represented by this alignment model) as well as a
C-terminal transmembrane domain. EMP46 and EMP47 are 45%
sequence-identical to one another and have sequence
homology to a class of intracellular lectins defined by
ERGIC-53 and VIP36. L-type lectins have a dome-shaped
beta-barrel carbohydrate recognition domain with a
curved seven-stranded beta-sheet referred to as the
"front face" and a flat six-stranded beta-sheet referred
to as the "back face". This domain homodimerizes so
that adjacent back sheets form a contiguous 12-stranded
sheet and homotetramers occur by a back-to-back
association of these homodimers. Though L-type lectins
exhibit both sequence and structural similarity to one
another, their carbohydrate binding specificities differ
widely.
Length = 215
Score = 29.6 bits (67), Expect = 6.0
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 459 ILQNGPDGEIGMLKIFQNDGQKEILEHPLCE-AF 491
+L + G G L+ F NDG K+ + AF
Sbjct: 107 LLIDNNGGSGGSLRGFLNDGSKDYKNEDVDSLAF 140
>gnl|CDD|114536 pfam05814, DUF843, Baculovirus protein of unknown function
(DUF843). This family consists of several Baculovirus
proteins of around 85 residues long with no known
function.
Length = 83
Score = 27.6 bits (62), Expect = 6.1
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 490 AFLYVKWEKMKKFYLFRLVLSSIFVLVLSVYVLTT--LAQDCYN 531
AF++ K E + L LVL +F +L+VY + T D Y
Sbjct: 14 AFIFDKNEGSSELILTLLVLFVLFFCLLNVYYINTESTPADLYT 57
>gnl|CDD|237361 PRK13355, PRK13355, bifunctional HTH-domain containing
protein/aminotransferase; Provisional.
Length = 517
Score = 29.7 bits (67), Expect = 6.9
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 812 VKPLNPRETRLPKEVMLNALDIARQRRIDPHFIWASEEIFD 852
+ P NP P+EV+ +DIAR+ ++ I S+EI+D
Sbjct: 288 INPNNPTGALYPREVLQQIVDIAREHQL----IIFSDEIYD 324
>gnl|CDD|149788 pfam08841, DDR, Diol dehydratase reactivase ATPase-like domain.
Diol dehydratase (DDH, EC:4.2.1.28) and its
isofunctional homologue glycerol dehydratase (GDH,
EC.4.2.1.30) are enzymes which catalyze the conversion
of glycerol 1,2-propanediol, and 1,2-ethanediol to
aldehydes. These reactions require coenzyme B12.
Cleavage of the Co-C bond of coenzyme B12 by substrates
or coenzyme analogues results in inactivation during
which coenzyme B12 remains tightly bound to the
apoenzyme. This family comprises of the large subunit of
the diol dehydratase and glycerol dehydratase
reactivating factors whose function is to reactivate the
holoenzyme by exchange of a damaged cofactor for intact
coenzyme.
Length = 332
Score = 29.3 bits (66), Expect = 8.7
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 261 AILD--SGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLA 318
AILD +G D I E VTA HLA G E + +L+ + +R E I +
Sbjct: 137 AILDLGAGSTDASIINAEGTVTATHLA---GAGEMVTMLINSELGLEDRALAEDIKKYPL 193
Query: 319 AKCQS 323
AK +S
Sbjct: 194 AKVES 198
>gnl|CDD|212046 cd11476, SLC5sbd_DUR3, Na(+)/urea-polyamine cotransporter DUR3, and
related proteins; solute-binding domain. Dur3 is the
yeast plasma membrane urea transporter. Saccharomyces
cerevisiae DUR3 also transports polyamine. The polyamine
uptake of S. cerevisiae DUR3 is activated upon its
phosphorylation by polyamine transport protein kinase 2
(PTK2). S. cerevisiae DUR3 also appears to play a role
in regulating the cellular boron concentration. This
subfamily belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 493
Score = 29.5 bits (67), Expect = 9.0
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 728 TAHIVFTIFMLF-VTVVLMNLLVGIA--VQDIQGLHKTAG 764
AH+VF F LF +VL LL+G + V + G++ A
Sbjct: 118 AAHLVFLFFALFTNFIVLAMLLLGGSAVVNALTGMNIVAA 157
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.136 0.399
Gapped
Lambda K H
0.267 0.0721 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 42,524,223
Number of extensions: 4192552
Number of successful extensions: 3806
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3607
Number of HSP's successfully gapped: 161
Length of query: 854
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 749
Effective length of database: 6,280,432
Effective search space: 4704043568
Effective search space used: 4704043568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.1 bits)