RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy817
(854 letters)
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 246 bits (631), Expect = 1e-73
Identities = 95/307 (30%), Positives = 151/307 (49%), Gaps = 16/307 (5%)
Query: 123 TALLWCVFVKREDLLDALHQLGADL---SNDKYGALHLAAFNGSIKGCSWLMLHGHDIN- 178
T L + +++ L + A+ + + LH+AA G ++ L+
Sbjct: 82 TPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQAC 141
Query: 179 FTKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHE------TIVHSAVSTNAVDCVQLLLSL 232
TK +TPLH A V A+ L++ AH + T +H AV N +D V+LLL
Sbjct: 142 MTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR 201
Query: 233 QINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVE 292
+P+ G +PLHIAA + + +++L G + ++ + T LHLAA+ G+ E
Sbjct: 202 GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYG-GSANAESVQGV-TPLHLAAQEGHAE 259
Query: 293 CLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLH-AS 351
+ +LL AN N N PLHL A+ V ++L++ G V+A+ TPLH AS
Sbjct: 260 MVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVAS 319
Query: 352 LSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPS 411
NI V + LL+ A+VNA+ GYSP+H AA + V L+ +GA + +
Sbjct: 320 HYGNIKLV---KFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSD 376
Query: 412 GSSALSI 418
G++ L+I
Sbjct: 377 GTTPLAI 383
Score = 239 bits (612), Expect = 8e-71
Identities = 85/283 (30%), Positives = 138/283 (48%), Gaps = 14/283 (4%)
Query: 144 GADL-SNDKYG--ALHLAAFNGSIKGCSWLMLHGHDINF-TKDSYTPLHFAVLGNYVDCA 199
G + G LH+A+F G + L+ G N TPLH A + + A
Sbjct: 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVA 63
Query: 200 KFLIKNKAHIHE------TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADR 253
K+L++NKA ++ T +H A + V+LLL NPN+ G +PLHIAA
Sbjct: 64 KYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAARE 123
Query: 254 GLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQI 313
G + + A+L+ A TK+ T LH+AA+ G V +LLE A+ N
Sbjct: 124 GHVETVLALLEKE-ASQACMTKKGF-TPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLT 181
Query: 314 PLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVN 373
PLH+A +++ +++LL +G ++ + TPLH + +N + V LL++G + N
Sbjct: 182 PLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEV--ARSLLQYGGSAN 239
Query: 374 ARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSAL 416
A + G +P+H+AA ++ V L+ A+ + SG + L
Sbjct: 240 AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPL 282
Score = 209 bits (534), Expect = 7e-60
Identities = 74/298 (24%), Positives = 124/298 (41%), Gaps = 22/298 (7%)
Query: 123 TALLWCVFVKREDLLDALHQLGADL-SNDKYG--ALHLAAFNGSIKGCSWLMLHGHDINF 179
T L + + + L + A + K G LH+A + ++ L+ G +
Sbjct: 148 TPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS 207
Query: 180 T-KDSYTPLHFAVLGNYVDCAKFLIKNKAHIHE------TIVHSAVSTNAVDCVQLLLSL 232
+ YTPLH A N V+ A+ L++ + T +H A + V LLLS
Sbjct: 208 PAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSK 267
Query: 233 QINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVE 292
Q N N+ N G++PLH+ A G + ++ G VD T+ T LH+A+ G ++
Sbjct: 268 QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG-VMVDATTRMGY-TPLHVASHYGNIK 325
Query: 293 CLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLH-AS 351
++ LL++ A+ N + PLH AA+ + + +LL+ G+ N D TPL A
Sbjct: 326 LVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAK 385
Query: 352 LSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKT 409
I L+++ + V D S VD ++ D +
Sbjct: 386 RLGYISVTDVLKVVTDETSFVLVSDKHRMSFPET---------VDEILDVSEDEGEEL 434
Score = 188 bits (479), Expect = 3e-52
Identities = 71/247 (28%), Positives = 104/247 (42%), Gaps = 32/247 (12%)
Query: 173 HGHDINF-TKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLS 231
G + TPLH A ++ K L++ A
Sbjct: 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGA------------------------ 38
Query: 232 LQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYV 291
+PNV N K +PLH+AA G K +L + A V+ K K+ + T LH AA G+
Sbjct: 39 ---SPNVSNVKVETPLHMAARAGHTEVAKYLLQNK-AKVNAKAKDDQ-TPLHCAARIGHT 93
Query: 292 ECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHAS 351
+++LLEN+AN N PLH+AA+ VE + LL K + TPLH +
Sbjct: 94 NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVA 153
Query: 352 LSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPS 411
+ V E+LL+ A+ NA G +P+H+A V L+ G S +
Sbjct: 154 AKYGKVRV--AELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN 211
Query: 412 GSSALSI 418
G + L I
Sbjct: 212 GYTPLHI 218
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 222 bits (569), Expect = 8e-66
Identities = 75/324 (23%), Positives = 134/324 (41%), Gaps = 43/324 (13%)
Query: 120 EKTTALLWCVFVKREDLLDALHQLGADL-SNDKYG--ALHLAAFNGSIKGCSWLMLHGHD 176
+K L E L+ L L + ++D LHLAA ++ L+ HG D
Sbjct: 24 KKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGAD 83
Query: 177 INF-TKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHE------TIVHSAVSTNAVDCVQLL 229
++ K PLH A + + + L+K+ A ++ T +H A S N V+ LL
Sbjct: 84 VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLL 143
Query: 230 LSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGM--------------------AD 269
LS +P ++N G S + +A L L
Sbjct: 144 LSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEII 203
Query: 270 VDIKTKERRVTALHLAAENGY---VECLRILLENHANCNERNHKEQIPLHLAAKCQSVEC 326
+ + TALH A + + + +LL AN NE+N PLH+AA+ +
Sbjct: 204 NFKQPQSHE-TALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDV 262
Query: 327 MEMLLRKGSQVNASDCDNRTPLH-ASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHI 385
ME+L + G+++NA D +T LH A+L+ ++ + +LL +G++ + + G++ +
Sbjct: 263 MEVLHKHGAKMNALDSLGQTALHRAALAGHLQTC---RLLLSYGSDPSIISLQGFTAAQM 319
Query: 386 AALSELSQCVDCLIMHGADISSKT 409
+ V ++ + +
Sbjct: 320 GN-----EAVQQILSESTPMRTSD 338
Score = 191 bits (489), Expect = 1e-54
Identities = 66/292 (22%), Positives = 112/292 (38%), Gaps = 28/292 (9%)
Query: 139 ALHQL--GADLSN-DKYG---ALHLAAFNGSIKGCSWLMLHGHDINF-TKDSYTPLHFAV 191
AL A +Y L A K + L + + TPLH A
Sbjct: 7 ALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAA 66
Query: 192 LGNYVDCAKFLIKNKAHIHE------TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVS 245
N V + L+++ A +H +H+A S + +LLL N ++ +
Sbjct: 67 GYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFT 126
Query: 246 PLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCN 305
PLH AA + + +L G AD + + +A+ +A E L + H+
Sbjct: 127 PLHEAASKNRVEVCSLLLSHG-ADPTLVNCHGK-SAVDMAPTPELRERLTYEFKGHS--- 181
Query: 306 ERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLH-ASLSKNILSVHPLEI 364
L A + + ++ L + T LH A S + E+
Sbjct: 182 --------LLQAAREADLAK-VKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAEL 232
Query: 365 LLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSAL 416
LL+ GANVN ++ +P+H+AA + ++ L HGA +++ G +AL
Sbjct: 233 LLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTAL 284
Score = 191 bits (488), Expect = 2e-54
Identities = 51/251 (20%), Positives = 94/251 (37%), Gaps = 24/251 (9%)
Query: 144 GADL-SNDKYG--ALHLAAFNGSIKGCSWLMLHGHDINF-TKDSYTPLHFAVLGNYVDCA 199
GA + + D + LH AA ++ CS L+ HG D + + A +
Sbjct: 114 GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERL 173
Query: 200 KFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCL 259
+ K + + A + V+ L+L+I + LH A
Sbjct: 174 TYEFKGHSLLQ------AAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRK 227
Query: 260 ---KAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLH 316
+ +L G A+V+ K K+ T LH+AAE + + + +L ++ A N + Q LH
Sbjct: 228 QVAELLLRKG-ANVNEKNKDFM-TPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALH 285
Query: 317 LAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARD 376
AA ++ +LL GS + T ++ + + +L + D
Sbjct: 286 RAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG-NEAV------QQILSESTPMRTSD 338
Query: 377 IFGYSPIHIAA 387
+ + A+
Sbjct: 339 VDY--RLLEAS 347
Score = 174 bits (444), Expect = 2e-48
Identities = 58/291 (19%), Positives = 97/291 (33%), Gaps = 66/291 (22%)
Query: 151 KYG--ALHLAAFNGSIKGCSWLMLHGHDINFTKDS-YTPLHFAVLGNYVDCAKFLIKNKA 207
++G AL LA T + L A
Sbjct: 2 EFGKSALDLAD-------------PSAKAVLTGEYKKDELLEA----------------- 31
Query: 208 HIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGM 267
A S N + LL L +N + + + +PLH+AA + ++ +L G
Sbjct: 32 ---------ARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG- 81
Query: 268 ADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECM 327
ADV K K LH A G+ E +LL++ A N + + PLH AA VE
Sbjct: 82 ADVHAKDKGGL-VPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVC 140
Query: 328 EMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEI-------------------LLKW 368
+LL G+ +C ++ + + + + E L
Sbjct: 141 SLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLAL 200
Query: 369 GANVNARDIFGYSPIHIAALS---ELSQCVDCLIMHGADISSKTPSGSSAL 416
+ + +H A S + Q + L+ GA+++ K + L
Sbjct: 201 EIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPL 251
Score = 110 bits (278), Expect = 2e-26
Identities = 35/182 (19%), Positives = 67/182 (36%), Gaps = 21/182 (11%)
Query: 120 EKTTALLWCVFVKREDLLDALHQLGADLSNDKYG--ALHLAAFNGSIKG---CSWLMLHG 174
+ + L + L + + ALH A + K L+ G
Sbjct: 178 KGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKG 237
Query: 175 HDINF-TKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHE------TIVHSAVSTNAVDCVQ 227
++N KD TPLH A + D + L K+ A ++ T +H A + +
Sbjct: 238 ANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCR 297
Query: 228 LLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAE 287
LLLS +P++++ +G + + + ++ IL + + L A++
Sbjct: 298 LLLSYGSDPSIISLQGFTAAQMGNE-----AVQQILSES-TPMRTSDVD---YRLLEASK 348
Query: 288 NG 289
G
Sbjct: 349 AG 350
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 213 bits (545), Expect = 1e-63
Identities = 62/257 (24%), Positives = 114/257 (44%), Gaps = 15/257 (5%)
Query: 154 ALHLAAFNGSIKGCSWLMLHGHDINF-TKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHE- 211
+H AA +G L+ G +N T D +PLH A LG ++ C K L+K+ A ++
Sbjct: 6 PMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV 65
Query: 212 -----TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSG 266
T + +A + + DCV LLL + + SP+H AA RG + C+ +++ G
Sbjct: 66 TADWHTPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYG 124
Query: 267 MADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVEC 326
++D K T L+LA EN C++ LLE+ A+ N+ + PLH A+ S E
Sbjct: 125 -GNIDHKISHLG-TPLYLACENQQRACVKKLLESGADVNQGKG-QDSPLHAVARTASEEL 181
Query: 327 MEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIA 386
+L+ G+ A + + + P+ ++ ++ L+ + +
Sbjct: 182 ACLLMDFGADTQAKNAEGKRPVELVPPES----PLAQLFLEREGPPSLMQLCRLRIRKCF 237
Query: 387 ALSELSQCVDCLIMHGA 403
+ + + ++
Sbjct: 238 GIQQHHKITKLVLPEDL 254
Score = 206 bits (527), Expect = 5e-61
Identities = 54/245 (22%), Positives = 95/245 (38%), Gaps = 14/245 (5%)
Query: 184 YTPLHFAVLGNYVDCAKFLIKNKAHIHE------TIVHSAVSTNAVDCVQLLLSLQINPN 237
++P+H A + + + LI ++ + +H A + CV++LL N
Sbjct: 4 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63
Query: 238 VLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRIL 297
+ +PL A G C+ +L G A V ++ + +H AA G+VEC+ L
Sbjct: 64 GVTADWHTPLFNACVSGSWDCVNLLLQHG-ASVQPESDLA--SPIHEAARRGHVECVNSL 120
Query: 298 LENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNIL 357
+ N + + PL+LA + Q C++ LL G+ VN +PLHA
Sbjct: 121 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTA-- 177
Query: 358 SVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALS 417
S +L+ +GA+ A++ G P+ + S + S
Sbjct: 178 SEELACLLMDFGADTQAKNAEGKRPVELVPPE--SPLAQLFLEREGPPSLMQLCRLRIRK 235
Query: 418 IIMRN 422
Sbjct: 236 CFGIQ 240
Score = 152 bits (388), Expect = 7e-42
Identities = 46/174 (26%), Positives = 86/174 (49%), Gaps = 6/174 (3%)
Query: 243 GVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHA 302
SP+H AA G L+ ++ G V+I T + + LH A G++ C++ILL++ A
Sbjct: 3 DWSPMHEAAIHGHQLSLRNLISQG-WAVNIITADHV-SPLHEACLGGHLSCVKILLKHGA 60
Query: 303 NCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPL 362
N PL A S +C+ +LL+ G+ V + D +P+H + + + +
Sbjct: 61 QVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVEC--V 117
Query: 363 EILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSAL 416
L+ +G N++ + +P+++A ++ CV L+ GAD+ ++ S L
Sbjct: 118 NSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV-NQGKGQDSPL 170
Score = 110 bits (277), Expect = 5e-27
Identities = 27/178 (15%), Positives = 48/178 (26%), Gaps = 44/178 (24%)
Query: 144 GADL-SNDKYG--ALHLAAFNGSIKGCSWLMLHGHDINFTKDSYTPLHFAVLGNYVDCAK 200
G ++ + L+LA N L+ G D+N K +PLH + A
Sbjct: 124 GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVARTASEELAC 183
Query: 201 FLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRG-LISCL 259
L+ A + N +G P+ + L
Sbjct: 184 LLMDFGA---------------------------DTQAKNAEGKRPVELVPPESPLAQLF 216
Query: 260 KAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHL 317
L+ + R + + +++L +Q LHL
Sbjct: 217 ---LERE-GPPSLMQLCRL-RIRKCFGIQQHHKITKLVLPEDL--------KQFLLHL 261
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 209 bits (535), Expect = 8e-62
Identities = 60/265 (22%), Positives = 107/265 (40%), Gaps = 23/265 (8%)
Query: 154 ALHLAAFNGSIKGCSWLMLHGHDINFTKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHE-- 211
F G L+ + + ++P+H A + + + LI ++
Sbjct: 36 PAGPRDFPGIR-----LLSNPLMGD-AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIIT 89
Query: 212 ----TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGM 267
+ +H A + CV++LL N + +PL A G C+ +L G
Sbjct: 90 ADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHG- 148
Query: 268 ADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECM 327
A V ++ + +H AA G+VEC+ L+ N + + PL+LA + Q C+
Sbjct: 149 ASVQPESDLA--SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACV 206
Query: 328 EMLLRKGSQVNASDCDNRTPLH-ASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIA 386
+ LL G+ VN +PLH + + +L+ +GA+ A++ G P+ +
Sbjct: 207 KKLLESGADVNQ-GKGQDSPLHAVVRTASEELA---CLLMDFGADTQAKNAEGKRPVELV 262
Query: 387 AL-SELSQCVDCLIMHGADISSKTP 410
S L+Q L GA + P
Sbjct: 263 PPESPLAQL--FLEREGASLPKPKP 285
Score = 194 bits (496), Expect = 2e-56
Identities = 61/268 (22%), Positives = 109/268 (40%), Gaps = 13/268 (4%)
Query: 157 LAAFNGSIKGCSWLMLHGHDIN------FTKDSYTPLHFAVLGNYVDCAKFLIKNKAHIH 210
+ + + S L+ G + D P + L+ +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVS-D 59
Query: 211 ETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADV 270
+ +H A ++ L+S N++ VSPLH A G +SC+K +L G A V
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHG-AQV 118
Query: 271 DIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEML 330
+ T + T L A +G +C+ +LL++ A+ + P+H AA+ VEC+ L
Sbjct: 119 NGVTADWH-TPLFNACVSGSWDCVNLLLQHGASVQPESDL-ASPIHEAARRGHVECVNSL 176
Query: 331 LRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSE 390
+ G ++ TPL+ + + ++ LL+ GA+VN SP+H +
Sbjct: 177 IAYGGNIDHKISHLGTPLYLACENQQRAC--VKKLLESGADVNQGK-GQDSPLHAVVRTA 233
Query: 391 LSQCVDCLIMHGADISSKTPSGSSALSI 418
+ L+ GAD +K G + +
Sbjct: 234 SEELACLLMDFGADTQAKNAEGKRPVEL 261
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 205 bits (524), Expect = 2e-60
Identities = 70/284 (24%), Positives = 117/284 (41%), Gaps = 28/284 (9%)
Query: 150 DKYG--ALHLAAFNGSIKGCSWLMLHGHDINFTKDSY--TPLHFAVLGNYVDCAKFLIKN 205
L A N + L+ G ++NF ++ TPLH AV + D + L+++
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61
Query: 206 KAHIHE------TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCL 259
A T A +V ++L LS + N + G + AA G + L
Sbjct: 62 GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKAL 121
Query: 260 KAILDSGMADVDIKTKERRV---------TALHLAAENGYVECLRILLENH-ANCNERNH 309
K + G A+V+++ K + TAL AAE G+VE L+ILL+ A+ N ++
Sbjct: 122 KFLYKRG-ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 180
Query: 310 KEQIPLHLAAKCQSVEC----MEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEIL 365
+ L A +LL G+ VN +TPL ++ K L + ++ L
Sbjct: 181 MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL--VQRL 238
Query: 366 L-KWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSK 408
L + +N D G + + +A +L + + L GA
Sbjct: 239 LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282
Score = 175 bits (447), Expect = 1e-49
Identities = 67/281 (23%), Positives = 117/281 (41%), Gaps = 29/281 (10%)
Query: 123 TALLWCVFVKREDLLDALHQLGADL-SNDKYG---ALHLAAFNGSIKGCSWLMLHGHDIN 178
L+ V + DL+ L + GA++ ++ G LH A L+ HG D
Sbjct: 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66
Query: 179 FT-KDSYTPLHFAVLGNYVDCAKFLIKNKAHIHE------TIVHSAVSTNAVDCVQLLLS 231
K+ TP A + V K + A ++E T A V ++ L
Sbjct: 67 LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126
Query: 232 LQINPNVLNN----------KGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTA 281
N N+ G + L AA++G + LK +LD ADV+ R A
Sbjct: 127 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGR-NA 185
Query: 282 LHLAAENGYVECL----RILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLL-RKGSQ 336
L A + + +LL++ A+ N R + + PL LA + + + ++ LL ++ +
Sbjct: 186 LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE 245
Query: 337 VNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDI 377
+N +D D +T L ++ + + E+L K GA+ + D+
Sbjct: 246 INDTDSDGKTALLLAVELKLKKI--AELLCKRGASTDCGDL 284
Score = 158 bits (403), Expect = 1e-43
Identities = 60/254 (23%), Positives = 99/254 (38%), Gaps = 45/254 (17%)
Query: 180 TKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVL 239
+ L AV VD + L++ A++ N +
Sbjct: 2 AVEDNHLLIKAVQNEDVDLVQQLLEGGANV-----------NFQE--------------- 35
Query: 240 NNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLE 299
G +PLH A ++ +L G AD ++ K T LAA G V+ L++ L
Sbjct: 36 EEGGWTPLHNAVQMSREDIVELLLRHG-ADPVLRKKNGA-TPFLLAAIAGSVKLLKLFLS 93
Query: 300 NHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN----------RTPLH 349
A+ NE + AA V+ ++ L ++G+ VN T L
Sbjct: 94 KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM 153
Query: 350 ASLSKNILSVHPLEILL-KWGANVNARDIFGYSPIHIAA----LSELSQCVDCLIMHGAD 404
+ K + V L+ILL + GA+VNA D G + + A S++ L+ HGAD
Sbjct: 154 DAAEKGHVEV--LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211
Query: 405 ISSKTPSGSSALSI 418
++ + G + L +
Sbjct: 212 VNVRGERGKTPLIL 225
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 203 bits (518), Expect = 3e-59
Identities = 66/304 (21%), Positives = 117/304 (38%), Gaps = 19/304 (6%)
Query: 115 KASQAEKTTALLWCVFVKREDLLDALHQLGADL-SNDKYG-ALHLAAFNGSIKGCSWLML 172
K + A++ ++ E L+ G A +G + L+
Sbjct: 2 KMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLE 61
Query: 173 HGHDINF-TKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHE------TIVHSAVSTNAVDC 225
G DIN+ D T LH A + + VD KFL++N A+I++ +H+A S +D
Sbjct: 62 RGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDI 121
Query: 226 VQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLA 285
+ L+S + +N++G +PL IA + + L+ ++ D++ A
Sbjct: 122 AEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIE--------AARKEE 173
Query: 286 AENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNR 345
+ + L H N LH+AA E +++L++ VN D D
Sbjct: 174 ERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGW 233
Query: 346 TPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADI 405
TPLHA+ IL++ ++ A + G + +A L +
Sbjct: 234 TPLHAAAHWGKEEA--CRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLH 291
Query: 406 SSKT 409
S K
Sbjct: 292 SEKR 295
Score = 197 bits (504), Expect = 3e-57
Identities = 61/302 (20%), Positives = 111/302 (36%), Gaps = 20/302 (6%)
Query: 150 DKYG--ALHLAAFNGSIKGCSWLMLHGHDINFTKDSYTPLHFAVLGNYVDCAKFLIKNKA 207
D L + GS ++ D A + L++ A
Sbjct: 5 DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGA 64
Query: 208 HIHE------TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKA 261
I+ T +H A + VD V+ L+ N N +N+G PLH AA G + +
Sbjct: 65 DINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEY 124
Query: 262 ILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENH-ANCNERNHKEQIPLHLAAK 320
++ G A V E T L +A E E L+ + + +E+ + A+
Sbjct: 125 LISQG-AHVGAVNSEGD-TPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDAR 182
Query: 321 CQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGY 380
+ L T LH + +K V L++L++ +VN +D G+
Sbjct: 183 -------QWLNSGHINDVRHAKSGGTALHVAAAKGYTEV--LKLLIQARYDVNIKDYDGW 233
Query: 381 SPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSSISL 440
+P+H AA + L+ + D+ + G +A + + + ++KK + S
Sbjct: 234 TPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSE 293
Query: 441 QD 442
+
Sbjct: 294 KR 295
Score = 143 bits (364), Expect = 3e-38
Identities = 45/217 (20%), Positives = 88/217 (40%), Gaps = 13/217 (5%)
Query: 203 IKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAI 262
+K + + ++ + + V + G A G + +
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGA-VFLAACSSGDTEEVLRL 59
Query: 263 LDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQ 322
L+ G AD++ + TALH A + V+ ++ L+EN AN N+ +++ IPLH AA C
Sbjct: 60 LERG-ADINYANVDGL-TALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG 117
Query: 323 SVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILL-KWGANVNARDIFGYS 381
++ E L+ +G+ V A + + TPL + + + + L+ + + G ++ A
Sbjct: 118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEEL--LQNEVNRQGVDIEAARKEEER 175
Query: 382 PIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSI 418
+ A L + SG +AL +
Sbjct: 176 IMLRDA-------RQWLNSGHINDVRHAKSGGTALHV 205
Score = 103 bits (260), Expect = 2e-24
Identities = 31/178 (17%), Positives = 67/178 (37%), Gaps = 18/178 (10%)
Query: 144 GADL-SNDKYG--ALHLAAFNGSIKGCSWLML-HGHDINFTKDSYTPLHFAVLGNYVDCA 199
GA + + + G L +A + + G DI D
Sbjct: 129 GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIE------AARKEEERIMLRDAR 182
Query: 200 KFLIKNKAHIHE------TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADR 253
++L + T +H A + + ++LL+ + + N+ + G +PLH AA
Sbjct: 183 QWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHW 242
Query: 254 GLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKE 311
G + ++++ D++ K + TA +A E+ + + + +E+ K+
Sbjct: 243 GKEEACRILVENL-CDMEAVNKVGQ-TAFDVADEDILGYLEELQKKQNLLHSEKREKK 298
Score = 34.8 bits (81), Expect = 0.11
Identities = 4/51 (7%), Positives = 12/51 (23%)
Query: 372 VNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRN 422
+ D + ++ ++ K G+ L+
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSG 51
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 204 bits (521), Expect = 7e-59
Identities = 56/319 (17%), Positives = 106/319 (33%), Gaps = 34/319 (10%)
Query: 123 TALLWCVFVKREDLLDALHQLGADL-SNDKYG--ALHLAAFNGSIKGCSWLMLHGHDINF 179
+ + D + L + G +++G ALHLA G + +L G +
Sbjct: 22 EKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS- 80
Query: 180 TKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVL 239
P+H AV+ N D L++ + + + +I +V
Sbjct: 81 LWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVN------EIGSHVK 134
Query: 240 NNKGVSPLHIAADRGL--ISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRIL 297
+ KG + LH G + +K ++ G A K K T L A E E L ++
Sbjct: 135 HCKGQTALHWCVGLGPEYLEMIKILVQLG-ASPTAKDKADE-TPLMRAMEFRNREALDLM 192
Query: 298 LE-----NHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASL 352
++ + + N + LH A + + G VN D ++ PL+ S+
Sbjct: 193 MDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSV 252
Query: 353 SKNILSVHPLEILL-------------KWGANVNARDIFGYSPIHIAALSELSQCVDCLI 399
++ + + LL G V + + AA + + L
Sbjct: 253 RAAMVLL--TKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQ 310
Query: 400 MHGADISSKTPSGSSALSI 418
++ +G+
Sbjct: 311 EKLDEVVRSLNTGAGGAVK 329
Score = 199 bits (509), Expect = 3e-57
Identities = 48/317 (15%), Positives = 104/317 (32%), Gaps = 30/317 (9%)
Query: 123 TALLWCVFVKREDLLDALHQLGADLSNDKYG--ALHLAAFNGSIKGCSWLMLHGHDINFT 180
TAL D L +G + +G +HLA L+ +
Sbjct: 55 TALHLACKFGCVDTAKYLASVGEVH-SLWHGQKPIHLAVMANKTDLVVALVEGAKERG-- 111
Query: 181 KDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVST--NAVDCVQLLLSLQINPNV 238
P + + + K +T +H V ++ +++L+ L +P
Sbjct: 112 ---QMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA 168
Query: 239 LNNKGVSPLHIAADRGLISCLKAILDSGM----ADVDIKTKERRVTALHLAAENGYVECL 294
+ +PL A + L ++D+ +D K+ + LH A + +
Sbjct: 169 KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGN-SHLHWAILINWEDVA 227
Query: 295 RILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRK-------------GSQVNASD 341
+E + N +++ +PL+L+ + V + LL+K G+ V
Sbjct: 228 MRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDR 287
Query: 342 CDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMH 401
+ A+ + V L++L + V G +
Sbjct: 288 VVWLDFVPAAADPSKQEV--LQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAP 345
Query: 402 GADISSKTPSGSSALSI 418
A + +++ S + + ++
Sbjct: 346 SAPVRTRSRSRARSSAV 362
Score = 193 bits (493), Expect = 5e-55
Identities = 50/287 (17%), Positives = 106/287 (36%), Gaps = 30/287 (10%)
Query: 150 DKYG--ALHLAAFNGSIKGCSWLMLHGHDINF-TKDSYTPLHFAVLGNYVDCAKFLIKNK 206
D +H+AA G L+ G + T LH A VD AK+L
Sbjct: 17 DDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76
Query: 207 AHIHE----TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAI 262
+H AV N D V L+ +G P + + +
Sbjct: 77 EVHSLWHGQKPIHLAVMANKTDLVVALVEGA------KERGQMPESLLNECDEREVNEI- 129
Query: 263 LDSGMADVDIKTKERRVTALHLAAENG--YVECLRILLENHANCNERNHKEQIPLHLAAK 320
+K + + TALH G Y+E ++IL++ A+ ++ ++ PL A +
Sbjct: 130 ------GSHVKHCKGQ-TALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAME 182
Query: 321 CQSVECMEMLL-----RKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNAR 375
++ E +++++ + +++ ++ + LH ++ N V ++ G +VN
Sbjct: 183 FRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDV--AMRFVEMGIDVNME 240
Query: 376 DIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRN 422
D P++++ + + L+ + + +++
Sbjct: 241 DNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDR 287
Score = 158 bits (401), Expect = 1e-42
Identities = 41/272 (15%), Positives = 86/272 (31%), Gaps = 62/272 (22%)
Query: 176 DINF-TKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQI 234
+ ++ +H A D + LI+
Sbjct: 12 NRIKSDDENMEKIHVAARKGQTDEVRRLIETGV--------------------------- 44
Query: 235 NPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECL 294
+P + N G + LH+A G + K + G + + +HLA + +
Sbjct: 45 SPTIQNRFGCTALHLACKFGCVDTAKYLASVG-EVHSLWHGQ---KPIHLAVMANKTDLV 100
Query: 295 RILLENHANCN--------ERNHKE-------------QIPLHLAAKC--QSVECMEMLL 331
L+E E + +E Q LH + +E +++L+
Sbjct: 101 VALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILV 160
Query: 332 RKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGA-----NVNARDIFGYSPIHIA 386
+ G+ A D + TPL ++ L++++ ++ + G S +H A
Sbjct: 161 QLGASPTAKDKADETPLMRAMEFRNREA--LDLMMDTVPSKSSLRLDYANKQGNSHLHWA 218
Query: 387 ALSELSQCVDCLIMHGADISSKTPSGSSALSI 418
L + G D++ + + L +
Sbjct: 219 ILINWEDVAMRFVEMGIDVNMEDNEHTVPLYL 250
Score = 134 bits (339), Expect = 2e-34
Identities = 37/226 (16%), Positives = 72/226 (31%), Gaps = 32/226 (14%)
Query: 123 TALLWCVFV--KREDLLDALHQLGADL-SNDKYG--ALHLAAFNGSIKGCSWLM-----L 172
TAL WCV + + +++ L QLGA + DK L A + + +M
Sbjct: 140 TALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSK 199
Query: 173 HGHDINF-TKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHE------TIVHSAVSTNAVDC 225
+++ K + LH+A+L N+ D A ++ ++ ++ +V V
Sbjct: 200 SSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLL 259
Query: 226 VQLLLSLQIN-------------PNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDI 272
+ LL + + AAD L+ + + +V
Sbjct: 260 TKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKL-DEVVR 318
Query: 273 KTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLA 318
+ R+ L A R+ ++
Sbjct: 319 SLNTGA-GGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363
Score = 133 bits (337), Expect = 5e-34
Identities = 32/194 (16%), Positives = 73/194 (37%), Gaps = 20/194 (10%)
Query: 227 QLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAA 286
+ ++N +++ + +H+AA +G ++ ++++G I+ + TALHLA
Sbjct: 4 SMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETG-VSPTIQNRFGC-TALHLAC 61
Query: 287 ENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRT 346
+ G V+ + L + + Q P+HLA + + L+ +
Sbjct: 62 KFGCVDTAKYLASVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGA------KERGQM 113
Query: 347 PLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAAL--SELSQCVDCLIMHGAD 404
P + V+ + + G + +H E + + L+ GA
Sbjct: 114 PESLLNECDEREVN--------EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS 165
Query: 405 ISSKTPSGSSALSI 418
++K + + L
Sbjct: 166 PTAKDKADETPLMR 179
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 198 bits (506), Expect = 7e-58
Identities = 53/265 (20%), Positives = 93/265 (35%), Gaps = 31/265 (11%)
Query: 150 DKYG--ALHLAAFNGSIKGCSWLMLHGHDINF----TKDSYTPLHFAVLGNYVDCAKFLI 203
+ G ALHLA + +L+ + T LH A + + L
Sbjct: 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65
Query: 204 KNKAHIHE------TIVHSAVSTNAVDCVQLLLSLQINPNVLNN-------------KGV 244
A + T +H A A C +LL + + +
Sbjct: 66 AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125
Query: 245 SPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANC 304
+P + + + + + ++ + + T LH+A + E +R+L + A+
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH-TPLHVAVIHKDAEMVRLLRDAGADL 184
Query: 305 NERNHKE-QIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLH-ASLSKNILSVHPL 362
N+ + PLHLA + Q+ +E+LL+ G+ A RTPL A L N +
Sbjct: 185 NKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILA--- 241
Query: 363 EILLKWGANVNARDIFGYSPIHIAA 387
+L GA SP +
Sbjct: 242 RLLRAHGAPEPEDGGDKLSPCSSSG 266
Score = 142 bits (360), Expect = 6e-38
Identities = 40/196 (20%), Positives = 69/196 (35%), Gaps = 18/196 (9%)
Query: 237 NVLNNKGVSPLHIAADRGLISCLKAILDSG--MADVDIKTKERRVTALHLAAENGYVECL 294
+ G + LH+A L +L +D++ + TALHLAA G +
Sbjct: 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQ-TALHLAAILGEASTV 61
Query: 295 RILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSK 354
L A LHLA + ++ C +LL+ D +
Sbjct: 62 EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121
Query: 355 NILSVHPL-------------EILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMH 401
+ P W + A + G++P+H+A + + ++ V L
Sbjct: 122 DTS-HAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA 180
Query: 402 GADISSKTP-SGSSAL 416
GAD++ P G + L
Sbjct: 181 GADLNKPEPTCGRTPL 196
Score = 132 bits (334), Expect = 2e-34
Identities = 43/237 (18%), Positives = 74/237 (31%), Gaps = 27/237 (11%)
Query: 123 TALLWCVFVKREDLLDALHQLGADL-SNDKYG--ALHLAAFNGSIKGCSWLMLHGHDIN- 178
TAL + ++ L+ GA + ++ G ALHLA + L+
Sbjct: 47 TALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPR 106
Query: 179 -------------FTKDSYTPLHF-AVLGNYVDCAKFLIKNKAHIHE------TIVHSAV 218
S+ P + + + + T +H AV
Sbjct: 107 DASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAV 166
Query: 219 STNAVDCVQLLLSLQINPNVL-NNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKER 277
+ V+LL + N G +PLH+A + S L+ +L +G AD +
Sbjct: 167 IHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG-ADPTARMYGG 225
Query: 278 RVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKG 334
R T L A R+L + A E + P + + +
Sbjct: 226 R-TPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281
Score = 90.3 bits (225), Expect = 5e-20
Identities = 22/116 (18%), Positives = 36/116 (31%), Gaps = 5/116 (4%)
Query: 305 NERNHKEQIPLHLAAKCQSVECMEMLLRKG---SQVNASDCDNRTPLHASLSKNILSVHP 361
LHLA Q ++ LL ++ + +T LH + S
Sbjct: 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST-- 60
Query: 362 LEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALS 417
+E L GA V + G++ +H+A C L+ S
Sbjct: 61 VEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQS 116
Score = 64.5 bits (158), Expect = 2e-11
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 337 VNASDCDNRTPLHASLSKNILSVHPLEILLKWGAN---VNARDIFGYSPIHIAALSELSQ 393
D T LH ++ L+ LL + A ++ ++ G + +H+AA+ +
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPF--LDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAS 59
Query: 394 CVDCLIMHGADISSKTPSGSSAL 416
V+ L GA + G +AL
Sbjct: 60 TVEKLYAAGAGVLVAERGGHTAL 82
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 191 bits (489), Expect = 6e-56
Identities = 59/266 (22%), Positives = 110/266 (41%), Gaps = 43/266 (16%)
Query: 150 DKYG--ALHLAAFNGSIKG----CSWLMLHGHDINF-TKDSYTPLHFAVLGNYVDCAKFL 202
D+ G LH+A G++ + G +++ TPLH AV+ + L
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 203 IKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAI 262
+ A +P L+ G + H+A + +CL+A+
Sbjct: 66 VTAGA---------------------------SPMALDRHGQTAAHLACEHRSPTCLRAL 98
Query: 263 LDSG---MADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKE-QIPLHLA 318
LDS D++ + + TALH+A E +++LLE A+ + + K + PL A
Sbjct: 99 LDSAAPGTLDLEARNYDGL-TALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHA 157
Query: 319 AKCQSVECMEMLLRKGSQVNASDCDNRTPLH-ASLSKNILSVHPLEILLKWGANVNARDI 377
+ S+ +++LL+ G+ VNA + LH AS + V L++ GA+ + ++
Sbjct: 158 VENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLV---RTLVRSGADSSLKNC 214
Query: 378 FGYSPIHIAALSELSQCVDCLIMHGA 403
+P+ +A + + A
Sbjct: 215 HNDTPLMVARSRRVIDILRGKATRPA 240
Score = 174 bits (445), Expect = 8e-50
Identities = 68/248 (27%), Positives = 112/248 (45%), Gaps = 32/248 (12%)
Query: 180 TKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVL 239
+D TPLH AV+ + L+ ++
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVN------LFQQGGR-----------------ELDIY 42
Query: 240 NNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLE 299
NN +PLH+A L S ++ ++ +G A + + TA HLA E+ CLR LL+
Sbjct: 43 NNLRQTPLHLAVITTLPSVVRLLVTAG-ASPMALDRHGQ-TAAHLACEHRSPTCLRALLD 100
Query: 300 NHA----NCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN-RTPLHASLSK 354
+ A + RN+ LH+A + E +++LL +G+ ++A D + R+PL ++
Sbjct: 101 SAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVEN 160
Query: 355 NILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSS 414
N LS+ +++LL+ GANVNA+ G S +H A+ L V L+ GAD S K +
Sbjct: 161 NSLSM--VQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDT 218
Query: 415 ALSIIMRN 422
L +
Sbjct: 219 PLMVARSR 226
Score = 89.4 bits (223), Expect = 4e-20
Identities = 27/120 (22%), Positives = 54/120 (45%), Gaps = 10/120 (8%)
Query: 305 NERNHKEQIPLHLAAKCQSVECMEMLL----RKGSQVNASDCDNRTPLHASLSKNILSVH 360
+ PLH+A ++ + L+ + G +++ + +TPLH ++ + SV
Sbjct: 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV- 61
Query: 361 PLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGA----DISSKTPSGSSAL 416
+ +L+ GA+ A D G + H+A C+ L+ A D+ ++ G +AL
Sbjct: 62 -VRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL 120
Score = 74.4 bits (184), Expect = 6e-15
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 337 VNASDCDNRTPLH-ASLSKNILSVHPL-EILLKWGANVNARDIFGYSPIHIAALSELSQC 394
+D D TPLH A + N+ +VH L + + G ++ + +P+H+A ++ L
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV 61
Query: 395 VDCLIMHGADISSKTPSGSSALSI 418
V L+ GA + G +A +
Sbjct: 62 VRLLVTAGASPMALDRHGQTAAHL 85
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 189 bits (483), Expect = 3e-55
Identities = 60/258 (23%), Positives = 113/258 (43%), Gaps = 33/258 (12%)
Query: 150 DKYG--ALHLAAFNGSIKGCSWLMLHGHDINF-TKDSYTPLHFAVLGNYVDCAKFLIKNK 206
+ LH AA G + C L+ G +I+ ++D TPL A N+++ K+LIK
Sbjct: 8 HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67
Query: 207 AHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSG 266
A + + +G + LH+AA +G ++ +L +G
Sbjct: 68 A---------------------------LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG 100
Query: 267 MADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVEC 326
DV+ + T + A E +V+ +++LL ++ N R+++E I LH AA V+
Sbjct: 101 QMDVNCQDDGGW-TPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDI 159
Query: 327 MEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIA 386
E+LL ++A + +PLH + +N + + L ++V ++ G +P+ A
Sbjct: 160 AEILLAAKCDLHAVNIHGDSPLHIAARENRYDC--VVLFLSRDSDVTLKNKEGETPLQCA 217
Query: 387 ALSELSQCVDCLIMHGAD 404
+L+ + D
Sbjct: 218 SLNSQVWSALQMSKALQD 235
Score = 173 bits (441), Expect = 2e-49
Identities = 63/245 (25%), Positives = 108/245 (44%), Gaps = 33/245 (13%)
Query: 176 DINF-TKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQI 234
+ ++ +PLH A +VD L++ A
Sbjct: 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGA--------------------------- 35
Query: 235 NPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECL 294
N + + +PL AA+ + +K ++ +G A VD K E T LHLAA+ G+ E +
Sbjct: 36 NIDTCSEDQRTPLMEAAENNHLEAVKYLIKAG-ALVDPKDAEGS-TCLHLAAKKGHYEVV 93
Query: 295 RILLENHA-NCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLS 353
+ LL N + N ++ P+ A + + V+ +++LL KGS +N D + LH +
Sbjct: 94 QYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAF 153
Query: 354 KNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGS 413
+ + EILL +++A +I G SP+HIAA CV + +D++ K G
Sbjct: 154 SGCVDI--AEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGE 211
Query: 414 SALSI 418
+ L
Sbjct: 212 TPLQC 216
Score = 157 bits (400), Expect = 8e-44
Identities = 47/232 (20%), Positives = 94/232 (40%), Gaps = 34/232 (14%)
Query: 144 GADL-SNDKYG--ALHLAAFNGSIKGCSWLMLHGHDINF-TKDSYTPLHFAVLGNYVDCA 199
GA++ + + L AA N ++ +L+ G ++ + T LH A + +
Sbjct: 34 GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVV 93
Query: 200 KFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCL 259
++L+ N ++ N ++ G +P+ A + + +
Sbjct: 94 QYLLSNGQ--------------------------MDVNCQDDGGWTPMIWATEYKHVDLV 127
Query: 260 KAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAA 319
K +L G +D++I+ E LH AA +G V+ ILL + + N PLH+AA
Sbjct: 128 KLLLSKG-SDINIRDNEEN-ICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAA 185
Query: 320 KCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGAN 371
+ +C+ + L + S V + + TPL + + + + K +
Sbjct: 186 RENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWS--ALQMSKALQD 235
Score = 154 bits (392), Expect = 1e-42
Identities = 52/186 (27%), Positives = 93/186 (50%), Gaps = 5/186 (2%)
Query: 234 INPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVEC 293
+N + + SPLH AA+ G + ++ +G A++D ++++R T L AAEN ++E
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAG-ANIDTCSEDQR-TPLMEAAENNHLEA 59
Query: 294 LRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQ-VNASDCDNRTPLHASL 352
++ L++ A + ++ + LHLAAK E ++ LL G VN D TP+ +
Sbjct: 60 VKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT 119
Query: 353 SKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSG 412
+ + +++LL G+++N RD +H AA S + L+ D+ + G
Sbjct: 120 EYKHVDL--VKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHG 177
Query: 413 SSALSI 418
S L I
Sbjct: 178 DSPLHI 183
Score = 96.7 bits (242), Expect = 1e-22
Identities = 33/119 (27%), Positives = 60/119 (50%), Gaps = 3/119 (2%)
Query: 301 HANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVH 360
H N + ++ PLH AA+ V+ ML++ G+ ++ D RTPL + N L
Sbjct: 1 HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEA- 59
Query: 361 PLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGA-DISSKTPSGSSALSI 418
++ L+K GA V+ +D G + +H+AA + V L+ +G D++ + G + +
Sbjct: 60 -VKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIW 117
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 188 bits (480), Expect = 4e-54
Identities = 39/255 (15%), Positives = 90/255 (35%), Gaps = 17/255 (6%)
Query: 170 LMLHGHDINF-TKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHE----TIVHSAVSTNAVD 224
L D ++ ++A+ N V L+ A + +H A +
Sbjct: 17 SFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTK 76
Query: 225 CVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHL 284
V++LL ++ + ++KG + L+ A D G + +K + + K T+ +
Sbjct: 77 IVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKN-WRLMFYGKTGWKTSFYH 135
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
A V + L + +H+ K V+ M +LL + N ++
Sbjct: 136 AVMLNDVSIVSYFLSEIPS-TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLL 194
Query: 345 RTP-LHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGA 403
P + ++ + + L+ L K+ N+ + + L + ++ +I
Sbjct: 195 FIPDIKLAIDNKDIEM--LQALFKYDINIYSAN-------LENVLLDDAEIAKMIIEKHV 245
Query: 404 DISSKTPSGSSALSI 418
+ S + + +
Sbjct: 246 EYKSDSYTKDLDIVK 260
Score = 155 bits (394), Expect = 2e-42
Identities = 47/252 (18%), Positives = 82/252 (32%), Gaps = 20/252 (7%)
Query: 123 TALLWCVFVKREDLLDALHQLGADLSNDKYG--ALHLAAFNGSIKGCSWLMLHGHDIN-F 179
+A + + L+ L GA N LH AA K L+ G D + F
Sbjct: 33 SASYYAIADNNVRLVCTLLNAGALK-NLLENEFPLHQAATLEDTKIVKILLFSGLDDSQF 91
Query: 180 TKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHE-------TIVHSAVSTNAVDCVQLLLSL 232
T L++AV + K +K + T + AV N V V LS
Sbjct: 92 DDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLS- 150
Query: 233 QINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVE 292
+I +S +HI G + + +LD + + + LA +N +E
Sbjct: 151 EIPSTFDLAILLSCIHITIKNGHVDMMILLLDYM-TSTNTNNSLLFIPDIKLAIDNKDIE 209
Query: 293 CLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASL 352
L+ L + N E +M++ K + + + +
Sbjct: 210 MLQALFKYDINIYS-------ANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNN 262
Query: 353 SKNILSVHPLEI 364
+ + E+
Sbjct: 263 KLDEIISKNKEL 274
Score = 144 bits (366), Expect = 1e-38
Identities = 31/202 (15%), Positives = 78/202 (38%), Gaps = 9/202 (4%)
Query: 216 SAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTK 275
S ++T ++ LS + + G S + A + + +L++G A ++
Sbjct: 5 SRINTWKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAG-ALKNLLEN 62
Query: 276 ERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGS 335
E LH AA + ++ILL + + ++ + K L+ A +++ +++ ++K
Sbjct: 63 E---FPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNW 119
Query: 336 QVNASDCDN-RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQC 394
++ +T + ++ N +S+ + L + S IHI +
Sbjct: 120 RLMFYGKTGWKTSFYHAVMLNDVSI--VSYFLSEIPS-TFDLAILLSCIHITIKNGHVDM 176
Query: 395 VDCLIMHGADISSKTPSGSSAL 416
+ L+ + ++
Sbjct: 177 MILLLDYMTSTNTNNSLLFIPD 198
Score = 108 bits (272), Expect = 3e-26
Identities = 28/218 (12%), Positives = 60/218 (27%), Gaps = 41/218 (18%)
Query: 123 TALLWCVFVKREDLLDALHQLGADL-SNDKYG---ALHLAAFNGSIKGCSWLMLHGHDIN 178
TAL + V + + L K G + + A + S+ +
Sbjct: 97 TALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF 156
Query: 179 FTKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNV 238
+ +H + +VD L+ + N
Sbjct: 157 DLAILLSCIHITIKNGHVDMMILLLDYMT---------------------------STNT 189
Query: 239 LNNKGVSP-LHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRIL 297
N+ P + +A D I L+A+ ++ +A E +++
Sbjct: 190 NNSLLFIPDIKLAIDNKDIEMLQALFKYD-INIY--------SANLENVLLDDAEIAKMI 240
Query: 298 LENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGS 335
+E H ++ + + + K + LR
Sbjct: 241 IEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMY 278
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 184 bits (470), Expect = 3e-53
Identities = 61/264 (23%), Positives = 109/264 (41%), Gaps = 35/264 (13%)
Query: 150 DKYG--ALHLAAFNGSIKGCSWLMLHGHDIN-FTKDSYTPLHFAVLGNYVDCAKFLIKNK 206
D Y + A G + C L+ G+D+ K++ T LH+A + N +D K+ I
Sbjct: 6 DDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKG 65
Query: 207 AHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSG 266
A + + + + +PLH A +G +S + ++ G
Sbjct: 66 AIV-----------DQLG---------------GDLNSTPLHWATRQGHLSMVVQLMKYG 99
Query: 267 MADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAA-KCQSVE 325
AD + E + +HLAA+ G+ + L+ + + + PL AA + SV+
Sbjct: 100 -ADPSLIDGEGC-SCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVD 157
Query: 326 CMEMLLRKGSQVNASD-CDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIH 384
+LL VN D T LH ++ +V + +LL+ GANV+A++I G S +
Sbjct: 158 PTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTV--ISLLLEAGANVDAQNIKGESALD 215
Query: 385 IAALSELSQCVDCLIMHGADISSK 408
+A + ++ L
Sbjct: 216 LAKQRKNVWMINHLQEARQAKGYD 239
Score = 177 bits (452), Expect = 8e-51
Identities = 51/239 (21%), Positives = 94/239 (39%), Gaps = 30/239 (12%)
Query: 181 KDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLN 240
S + A + + L++ + +
Sbjct: 7 DYSTWDIVKATQYGIYERCRELVEAGY---------------------------DVRQPD 39
Query: 241 NKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLEN 300
+ V+ LH AA I +K + G A VD + T LH A G++ + L++
Sbjct: 40 KENVTLLHWAAINNRIDLVKYYISKG-AIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY 98
Query: 301 HANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVH 360
A+ + + + +HLAA+ + L+ KG V+ D + TPL + + SV
Sbjct: 99 GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWA-AYRTHSVD 157
Query: 361 PLEILLKWGANVNARD-IFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSI 418
P +LL + +VN D + +H A L+ + + L+ GA++ ++ G SAL +
Sbjct: 158 PTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDL 216
Score = 159 bits (405), Expect = 2e-44
Identities = 51/232 (21%), Positives = 91/232 (39%), Gaps = 15/232 (6%)
Query: 123 TALLWCVFVKREDLLDALHQLGADL-SNDKYG--ALHLAAFNGSIKGCSWLMLHGHDINF 179
++ + L + G D+ DK LH AA N I + + G ++
Sbjct: 11 WDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVD- 69
Query: 180 TKDS---YTPLHFAVLGNYVDCAKFLIKNKAHIHE------TIVHSAVSTNAVDCVQLLL 230
TPLH+A ++ L+K A + +H A V L+
Sbjct: 70 QLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLI 129
Query: 231 SLQINPNVLNNKGVSPLHIAADRG-LISCLKAILDSGMADVDIKTKERRVTALHLAAENG 289
+ + ++++ G++PL AA R + + +L V++ K + TALH A G
Sbjct: 130 AKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFN-VSVNLGDKYHKNTALHWAVLAG 188
Query: 290 YVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASD 341
+ +LLE AN + +N K + L LA + ++V + L +
Sbjct: 189 NTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240
Score = 148 bits (377), Expect = 1e-40
Identities = 35/185 (18%), Positives = 76/185 (41%), Gaps = 7/185 (3%)
Query: 235 NPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECL 294
+ +++ + A G+ + ++++G DV KE T LH AA N ++ +
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAG-YDVRQPDKENV-TLLHWAAINNRIDLV 58
Query: 295 RILLENHANCNERNHKE-QIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLS 353
+ + A ++ PLH A + + + L++ G+ + D + + +H +
Sbjct: 59 KYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQ 118
Query: 354 KNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELS-QCVDCLIMHGADISSKT-PS 411
S+ + L+ G +V+ D G +P+ AA S L+ ++
Sbjct: 119 FGHTSI--VAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYH 176
Query: 412 GSSAL 416
++AL
Sbjct: 177 KNTAL 181
Score = 95.2 bits (238), Expect = 5e-22
Identities = 25/117 (21%), Positives = 44/117 (37%), Gaps = 3/117 (2%)
Query: 303 NCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPL 362
+ + + A + E L+ G V D +N T LH + N + + +
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDL--V 58
Query: 363 EILLKWGANVNARDI-FGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSI 418
+ + GA V+ +P+H A V L+ +GAD S G S + +
Sbjct: 59 KYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHL 115
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 188 bits (480), Expect = 3e-53
Identities = 62/314 (19%), Positives = 116/314 (36%), Gaps = 35/314 (11%)
Query: 123 TALLWCVFVKREDLLDALHQLGADLSN-DKYG--ALHLAAFNGSIKGCSWLMLHGHDINF 179
+ L D H + + LH A GS + +I
Sbjct: 63 YPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNIID 121
Query: 180 TKDSYTPLHFAVLGNYVDCAKFLIKNK--------AHIHE------TIVHSAVSTNAVDC 225
+ + T LH+ + + ++ LI ++ A ++ T + AV
Sbjct: 122 PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRL 181
Query: 226 VQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGM--ADVDIKTKERRVTALH 283
V L+ +P + N S LH AA + +L+S D++ + TAL
Sbjct: 182 VAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGM-TALM 240
Query: 284 LAAENGY---VECLRILLENHANCN--------ERNHKEQIPLHLAAKCQSVECMEMLLR 332
+ A N V ++L+E A + +K + LH AA+ ++ ++ L+
Sbjct: 241 IVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVG 300
Query: 333 -KGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSEL 391
KGS + D D +TP+ + + + V + L++ GA+V A D ++ +A +
Sbjct: 301 EKGSNKDKQDEDGKTPIMLAAQEGRIEV--VMYLIQQGASVEAVDATDHTARQLAQANNH 358
Query: 392 SQCVDCLIMHGADI 405
VD +
Sbjct: 359 HNIVDIFDRCRPER 372
Score = 184 bits (470), Expect = 7e-52
Identities = 56/301 (18%), Positives = 116/301 (38%), Gaps = 38/301 (12%)
Query: 150 DKYG--ALHLAAFNGSIKGCSWLMLHGHDINFTKDSY--TPLHFAVLGNYVDCAKFLIKN 205
Y NG+ + + + LH G+Y + + +
Sbjct: 58 QHYSLYPNPQGYGNGNDFLGDFNHTNLQIPT-EPEPESPIKLHTEAAGSY-AITEPITRE 115
Query: 206 KAHIHE-----TIVHSAVSTNAVDCVQLLLSLQI--------NPNVLNNKGVSPLHIAAD 252
+I + T++H S ++ + + L+ + + N ++ +PL +A
Sbjct: 116 SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVL 175
Query: 253 RGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENH---ANCNERNH 309
+ ++ +G AD I K R +ALH AA N + +L + + E +
Sbjct: 176 ARRRRLVAYLMKAG-ADPTIYNKSER-SALHQAAANRDFGMMVYMLNSTKLKGDIEELDR 233
Query: 310 KEQIPLHLAAKC---QSVECMEMLLRKGSQVN--------ASDCDNRTPLHASLSKNILS 358
L + A V ++L+ KG++V+ + RT LH + + +
Sbjct: 234 NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMP 293
Query: 359 VHPLEILL-KWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALS 417
+ ++ L+ + G+N + +D G +PI +AA + V LI GA + + + +A
Sbjct: 294 I--VKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQ 351
Query: 418 I 418
+
Sbjct: 352 L 352
Score = 172 bits (439), Expect = 1e-47
Identities = 50/296 (16%), Positives = 92/296 (31%), Gaps = 37/296 (12%)
Query: 149 NDKYGALHLAAFNGSIKGCSWLMLHGHDINFTKDSYTPLHFAVLGNYVDCAKFLIKNKAH 208
+L A+++G IK S P F N
Sbjct: 35 TSSQHSLLEASYDGYIKR--------QRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQI 86
Query: 209 IHE------TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRG-------L 255
E +H+ + + + + +N + LH A L
Sbjct: 87 PTEPEPESPIKLHTEAA-GSYAITEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDL 144
Query: 256 ISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPL 315
I + ADV+ + T L LA + L++ A+ N E+ L
Sbjct: 145 IVHEAKECIAAGADVNAMDCDEN-TPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL 203
Query: 316 HLAAKCQSVECMEMLLRK---GSQVNASDCDNRTPLH-ASLSKNILSVHPLEILLKWGAN 371
H AA + M +L + D + T L + ++ V ++L++ GA
Sbjct: 204 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAK 263
Query: 372 VN--------ARDIFGYSPIHIAALSELSQCVDCLIMH-GADISSKTPSGSSALSI 418
V+ + G + +H AA V L+ G++ + G + + +
Sbjct: 264 VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIML 319
Score = 126 bits (319), Expect = 1e-31
Identities = 43/188 (22%), Positives = 62/188 (32%), Gaps = 19/188 (10%)
Query: 237 NVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRI 296
+ L A+ G I + L + NG
Sbjct: 31 HQSITSSQHSLLEASYDGYIKRQRNELQHY-----------SLYPNPQGYGNGNDFLGDF 79
Query: 297 LLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKN- 355
N E + I LH A S E + R+ + NRT LH S +
Sbjct: 80 NHTNLQIPTEPEPESPIKLHTEAAG-SYAITEPITRESVNIIDPR-HNRTVLHWIASNSS 137
Query: 356 -----ILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTP 410
L VH + + GA+VNA D +P+ +A L+ + V L+ GAD +
Sbjct: 138 AEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNK 197
Query: 411 SGSSALSI 418
S SAL
Sbjct: 198 SERSALHQ 205
Score = 126 bits (318), Expect = 2e-31
Identities = 45/228 (19%), Positives = 77/228 (33%), Gaps = 17/228 (7%)
Query: 202 LIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKA 261
++N+ + S +++ ++ N L + + P G L
Sbjct: 20 PMENEEKNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNG-NDFLGD 78
Query: 262 ILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKC 321
+ + E LH A G + N + H + LH A
Sbjct: 79 FNHTNLQIPTEPEPESP-IKLHTEA-AGSYAITEPITRESVNIIDPRHN-RTVLHWIASN 135
Query: 322 QSVECMEMLLR--------KGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVN 373
S E E L+ G+ VNA DCD TPL ++ + + L+K GA+
Sbjct: 136 SSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRL--VAYLMKAGADPT 193
Query: 374 ARDIFGYSPIHIAALSELSQCVDCLIMH---GADISSKTPSGSSALSI 418
+ S +H AA + + ++ DI +G +AL I
Sbjct: 194 IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMI 241
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 184 bits (469), Expect = 5e-53
Identities = 55/269 (20%), Positives = 94/269 (34%), Gaps = 33/269 (12%)
Query: 150 DKYG--ALHLAAFNGSIKGCSWLMLHGHDINFTKDSYTPLHFAVLGNYVDCAKFLIKNKA 207
G L +A+ +G + + I A
Sbjct: 7 GPDGFTPLMIASCSG-------------------GGLETGNSEEEEDAPAVISDFIYQGA 47
Query: 208 HIH-------ETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLK 260
+H ET +H A + D + LL + N+ +N G +PLH A +
Sbjct: 48 SLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQ 107
Query: 261 AILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAK 320
++ + D+D + + T L LAA L L+ +HA+ N + + LH AA
Sbjct: 108 ILIRNRATDLDARMHDGT-TPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAA 166
Query: 321 CQSVECMEMLLRKGSQVNASDCDNRTPLH-ASLSKNILSVHPLEILLKWGANVNARDIFG 379
+V+ +LL+ G+ + + TPL A+ + + ++LL AN + D
Sbjct: 167 VNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETA---KVLLDHFANRDITDHMD 223
Query: 380 YSPIHIAALSELSQCVDCLIMHGADISSK 408
P IA V L +
Sbjct: 224 RLPRDIAQERMHHDIVRLLDLEHHHHHHH 252
Score = 168 bits (427), Expect = 3e-47
Identities = 58/246 (23%), Positives = 96/246 (39%), Gaps = 21/246 (8%)
Query: 176 DINF-TKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQI 234
D+N D +TPL A +S +A + +
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGG--------------LETGNSEEEEDAPAVISDFIYQGA 47
Query: 235 N-PNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVEC 293
+ N + G + LH+AA K +L++ AD +I+ R T LH A
Sbjct: 48 SLHNQTDRTGETALHLAARYSRSDAAKRLLEAS-ADANIQDNMGR-TPLHAAVSADAQGV 105
Query: 294 LRILLENHA-NCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASL 352
+IL+ N A + + R H PL LAA+ +E L+ + VNA D ++ LH +
Sbjct: 106 FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA 165
Query: 353 SKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSG 412
+ N + +LLK GAN + ++ +P+ +AA + L+ H A+
Sbjct: 166 AVNNVDA--AVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMD 223
Query: 413 SSALSI 418
I
Sbjct: 224 RLPRDI 229
Score = 144 bits (367), Expect = 3e-39
Identities = 51/197 (25%), Positives = 85/197 (43%), Gaps = 17/197 (8%)
Query: 234 INPNVLNNKGVSPLHIAADRGL-------------ISCLKAILDSGMADVDIKTKERRVT 280
++ NV G +PL IA+ G + + + G A + +T T
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQG-ASLHNQTDRTGET 59
Query: 281 ALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKG-SQVNA 339
ALHLAA + + LLE A+ N +++ + PLH A + ++L+R + ++A
Sbjct: 60 ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 119
Query: 340 SDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLI 399
D TPL + + + LE L+ A+VNA D G S +H AA L+
Sbjct: 120 RMHDGTTPLILAARLAVEGM--LEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL 177
Query: 400 MHGADISSKTPSGSSAL 416
+GA+ + + L
Sbjct: 178 KNGANKDMQNNREETPL 194
Score = 136 bits (346), Expect = 2e-36
Identities = 50/197 (25%), Positives = 79/197 (40%), Gaps = 13/197 (6%)
Query: 123 TALLWCVFVKREDLLDALHQLGADL-SNDKYG--ALHLAAFNGSIKGCSWLMLHG-HDIN 178
TAL R D L + AD D G LH A + L+ + D++
Sbjct: 59 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 118
Query: 179 F-TKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHE------TIVHSAVSTNAVDCVQLLLS 231
D TPL A + LI + A ++ + +H A + N VD +LL
Sbjct: 119 ARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 178
Query: 232 LQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYV 291
N ++ NN+ +PL +AA G K +LD A+ DI R +A E +
Sbjct: 179 NGANKDMQNNREETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDR-LPRDIAQERMHH 236
Query: 292 ECLRILLENHANCNERN 308
+ +R+L H + + +
Sbjct: 237 DIVRLLDLEHHHHHHHH 253
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 180 bits (459), Expect = 7e-52
Identities = 54/250 (21%), Positives = 95/250 (38%), Gaps = 34/250 (13%)
Query: 180 TKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVL 239
T+D + LH A++ + ++ + N
Sbjct: 5 TEDGDSFLHLAIIHEEKALTM-----------------------EVIRQVKGDLAFLNFQ 41
Query: 240 NNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLE 299
NN +PLH+A +A+L +G D +++ T LHLA E G + + +L +
Sbjct: 42 NNLQQTPLHLAVITNQPEIAEALLGAG-CDPELRDFRGN-TPLHLACEQGCLASVGVLTQ 99
Query: 300 NHANC------NERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASD-CDNRTPLHASL 352
+ N+ LHLA+ + +E+L+ G+ VNA + C+ RT LH ++
Sbjct: 100 SCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV 159
Query: 353 SKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSG 412
+ + +LLK GA+VN GYSP + ++ L + P
Sbjct: 160 DLQNPDL--VSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPES 217
Query: 413 SSALSIIMRN 422
S +
Sbjct: 218 EDEESYDTES 227
Score = 173 bits (440), Expect = 3e-49
Identities = 46/229 (20%), Positives = 80/229 (34%), Gaps = 20/229 (8%)
Query: 150 DKYG--ALHLAAFNGSIKGCS----WLMLHGHDINFT-KDSYTPLHFAVLGNYVDCAKFL 202
+ G LHLA + + +NF TPLH AV+ N + A+ L
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64
Query: 203 IKNKAHIHE------TIVHSAVSTNAVDCVQLLLSLQINP------NVLNNKGVSPLHIA 250
+ T +H A + V +L P N G + LH+A
Sbjct: 65 LGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA 124
Query: 251 ADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHK 310
+ G + ++ ++ G ADV+ + TALHLA + + + +LL+ A+ N ++
Sbjct: 125 SIHGYLGIVELLVSLG-ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 183
Query: 311 EQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSV 359
P L S + L + + ++
Sbjct: 184 GYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEF 232
Score = 141 bits (357), Expect = 4e-38
Identities = 40/212 (18%), Positives = 69/212 (32%), Gaps = 19/212 (8%)
Query: 134 EDLLDALHQLGADL-SNDKYG--ALHLAAFNGSIKGCSWLMLHGHDINF-TKDSYTPLHF 189
+++ + A L + LHLA + L+ G D TPLH
Sbjct: 25 MEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHL 84
Query: 190 AVLGNYVDCAKFLIKNKAHIH------------ETIVHSAVSTNAVDCVQLLLSLQINPN 237
A + L ++ H T +H A + V+LL+SL + N
Sbjct: 85 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 144
Query: 238 VLNNK-GVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRI 296
G + LH+A D + +L G ADV+ T + + L +
Sbjct: 145 AQEPCNGRTALHLAVDLQNPDLVSLLLKCG-ADVNRVTYQGY-SPYQLTWGRPSTRIQQQ 202
Query: 297 LLENHANCNERNHKEQIPLHLAAKCQSVECME 328
L + + + + + + E E
Sbjct: 203 LGQLTLENLQMLPESEDEESYDTESEFTEFTE 234
Score = 69.1 bits (170), Expect = 4e-13
Identities = 14/80 (17%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Query: 339 ASDCDNRTPLH-ASLSKNILSVHPL-EILLKWGANVNARDIFGYSPIHIAALSELSQCVD 396
D + LH A + + + + A +N ++ +P+H+A ++ + +
Sbjct: 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62
Query: 397 CLIMHGADISSKTPSGSSAL 416
L+ G D + G++ L
Sbjct: 63 ALLGAGCDPELRDFRGNTPL 82
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 175 bits (447), Expect = 2e-50
Identities = 54/245 (22%), Positives = 91/245 (37%), Gaps = 34/245 (13%)
Query: 167 CSWLMLHGHDINFTKDSY--TPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVD 224
S + G ++ D T LH A + D AK L++ A
Sbjct: 7 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASA----------------- 49
Query: 225 CVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHL 284
+ N+ +N G +PLH A + ++ + D+D + + T L L
Sbjct: 50 ----------DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT-TPLIL 98
Query: 285 AAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
AA L L+ +HA+ N + + LH AA +V+ +LL+ G+ + +
Sbjct: 99 AARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE 158
Query: 345 RTPLH-ASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGA 403
TPL A+ + + ++LL AN + D P IA V L +
Sbjct: 159 ETPLFLAAREGSYETA---KVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNL 215
Query: 404 DISSK 408
S +
Sbjct: 216 VRSPQ 220
Score = 168 bits (428), Expect = 1e-47
Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 35/236 (14%)
Query: 144 GADLSN--DKYG--ALHLAAFNGSIKGCSWLMLHGHDINF-TKDSYTPLHFAVLGNYVDC 198
GA L N D+ G ALHLAA L+ D N TPLH AV +
Sbjct: 14 GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGV 73
Query: 199 AKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISC 258
+ LI+N+A + + + G +PL +AA +
Sbjct: 74 FQILIRNRA--------------------------TDLDARMHDGTTPLILAARLAVEGM 107
Query: 259 LKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLA 318
L+ +++S ADV+ + +ALH AA V+ +LL+N AN + +N++E+ PL LA
Sbjct: 108 LEDLINSH-ADVNAVDDLGK-SALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLA 165
Query: 319 AKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNA 374
A+ S E ++LL + + +D +R P + + + + +L ++ +
Sbjct: 166 AREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDI--VRLLDEYNLVRSP 219
Score = 156 bits (398), Expect = 1e-43
Identities = 50/200 (25%), Positives = 85/200 (42%), Gaps = 6/200 (3%)
Query: 221 NAVDCVQLLLSLQIN-PNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRV 279
+A + + + N + G + LH+AA K +L++ AD +I+ R
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS-ADANIQDNMGR- 59
Query: 280 TALHLAAENGYVECLRILLENHA-NCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVN 338
T LH A +IL+ N A + + R H PL LAA+ +E L+ + VN
Sbjct: 60 TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN 119
Query: 339 ASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCL 398
A D ++ LH + + N + +LLK GAN + ++ +P+ +AA + L
Sbjct: 120 AVDDLGKSALHWAAAVNNVDA--AVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 177
Query: 399 IMHGADISSKTPSGSSALSI 418
+ H A+ I
Sbjct: 178 LDHFANRDITDHMDRLPRDI 197
Score = 131 bits (332), Expect = 8e-35
Identities = 51/198 (25%), Positives = 80/198 (40%), Gaps = 13/198 (6%)
Query: 123 TALLWCVFVKREDLLDALHQLGADL-SNDKYG--ALHLAAFNGSIKGCSWLMLHG-HDIN 178
TAL R D L + AD D G LH A + L+ + D++
Sbjct: 27 TALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 86
Query: 179 F-TKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHE------TIVHSAVSTNAVDCVQLLLS 231
D TPL A + LI + A ++ + +H A + N VD +LL
Sbjct: 87 ARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 146
Query: 232 LQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYV 291
N ++ NN+ +PL +AA G K +LD A+ DI R +A E +
Sbjct: 147 NGANKDMQNNREETPLFLAAREGSYETAKVLLDHF-ANRDITDHMDR-LPRDIAQERMHH 204
Query: 292 ECLRILLENHANCNERNH 309
+ +R+L E + + + H
Sbjct: 205 DIVRLLDEYNLVRSPQLH 222
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 172 bits (438), Expect = 5e-49
Identities = 59/253 (23%), Positives = 99/253 (39%), Gaps = 35/253 (13%)
Query: 154 ALHLAAFNGSIKG-CSWLMLHGHDINFT-KDSYTPLHFAVLGNYVDCAKFLIKNKAHIHE 211
LH A L + +D PLH++V + FL+ ++
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV-- 62
Query: 212 TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGM-ADV 270
N D ++ G +P HIA G + +K++ D + D+
Sbjct: 63 ---------NLDDYP-------------DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL 100
Query: 271 DIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEML 330
+ T + T LHLA + E + L+EN A+ ++ QIPLH AA S++ +E+L
Sbjct: 101 NKITNQGV-TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
Query: 331 LRKG-SQVNASDCDNRTPLHASLSKNILSVHPLEILL-KWGANVNARDIFGYSPIHIAAL 388
G S VN D TPL +L++ +L+ K+GA + D G +A
Sbjct: 160 CGLGKSAVNWQDKQGWTPLFHALAEGHGDA--AVLLVEKYGAEYDLVDNKGAKAEDVALN 217
Query: 389 SELSQCVDCLIMH 401
+ + +
Sbjct: 218 EQ---VKKFFLNN 227
Score = 149 bits (379), Expect = 5e-41
Identities = 40/198 (20%), Positives = 79/198 (39%), Gaps = 17/198 (8%)
Query: 144 GADL-SNDKYG--ALHLAAFNGSIKGCSWLMLHGHDINF----TKDSYTPLHFAVLGNYV 196
+ L D+ G LH + + + S+L+ ++N +TP H A +
Sbjct: 26 PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNL 85
Query: 197 DCAKFLIKN--KAHIHE------TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLH 248
+ K L K +++ T +H AV + Q L+ + + + PLH
Sbjct: 86 EVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLH 145
Query: 249 IAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENH-ANCNER 307
AA G + ++ + G + V+ + K+ T L A G+ + +L+E + A +
Sbjct: 146 RAASVGSLKLIELLCGLGKSAVNWQDKQGW-TPLFHALAEGHGDAAVLLVEKYGAEYDLV 204
Query: 308 NHKEQIPLHLAAKCQSVE 325
++K +A Q +
Sbjct: 205 DNKGAKAEDVALNEQVKK 222
Score = 115 bits (291), Expect = 3e-29
Identities = 33/143 (23%), Positives = 55/143 (38%), Gaps = 8/143 (5%)
Query: 280 TALHLAAENG-YVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVN 338
LH A + + +L + +++ +IPLH + Q+ E LL K VN
Sbjct: 4 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 339 ASDC---DNRTPLHASLSKNILSVHPLEILL--KWGANVNARDIFGYSPIHIAALSELSQ 393
D TP H + S L V ++ L ++N G + +H+A + +
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEV--VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121
Query: 394 CVDCLIMHGADISSKTPSGSSAL 416
LI +GA + K L
Sbjct: 122 VSQFLIENGASVRIKDKFNQIPL 144
Score = 62.5 bits (153), Expect = 5e-11
Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 344 NRTPLH-ASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHG 402
+ PLH A + V E+L + + +D G P+H + + + L+
Sbjct: 2 SNYPLHQACMENEFFKV--QELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 59
Query: 403 ADI---SSKTPSGSSALSI 418
++ SG + I
Sbjct: 60 ENVNLDDYPDDSGWTPFHI 78
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 162 bits (412), Expect = 1e-45
Identities = 39/215 (18%), Positives = 72/215 (33%), Gaps = 16/215 (7%)
Query: 180 TKDSYTPLHFAVLGNYVDCAKFLIKNKAHI------HETIVHSAVSTNAVDCVQLLLSLQ 233
K + A+ L + I +T S +
Sbjct: 9 VKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIP-----S 63
Query: 234 INPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVEC 293
+PLH AA RG +S L+ LD+ V+ K TAL+ A G+ +
Sbjct: 64 NYVAEQAESIDNPLHEAAKRGNLSWLRECLDNR-VGVNGLDKAGS-TALYWACHGGHKDI 121
Query: 294 LRILLENH-ANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASL 352
+ +L N++N LH AA + +++LL KG++ + + + + +
Sbjct: 122 VEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMAT 181
Query: 353 SKNILSVHPLEILLKWGANVNARDIFGYSPIHIAA 387
+ S+ L+ A + Y +
Sbjct: 182 NAACASL--LKKKQGTDAVRTLSNAEDYLDDEDSD 214
Score = 157 bits (400), Expect = 4e-44
Identities = 35/204 (17%), Positives = 74/204 (36%), Gaps = 5/204 (2%)
Query: 150 DKYG--ALHLAAFNGSIKGCSWLMLHGHDINF-TKDSYTPLHFAVLGNYVDCAKFLIKN- 205
K G + A + + L + DI + T S T
Sbjct: 9 VKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAE 68
Query: 206 KAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDS 265
+A + +H A + ++ L ++ N L+ G + L+ A G ++ +
Sbjct: 69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQ 128
Query: 266 GMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVE 325
+++ + K TALH AA GY + +++LL A + RN ++++ +A
Sbjct: 129 PNIELNQQNKLGD-TALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACAS 187
Query: 326 CMEMLLRKGSQVNASDCDNRTPLH 349
++ + S+ ++
Sbjct: 188 LLKKKQGTDAVRTLSNAEDYLDDE 211
Score = 136 bits (345), Expect = 1e-36
Identities = 33/209 (15%), Positives = 71/209 (33%), Gaps = 18/209 (8%)
Query: 123 TALLWCVFVKREDLLDALHQLGADL---SNDKYGALHLAAFNGSIKGCSWLMLHGHDINF 179
+ ++ D L+ D+ ++ G ++ + +
Sbjct: 14 VKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRT-----GLIPSNYVAE 68
Query: 180 T-KDSYTPLHFAVLGNYVDCAKFLIKNKAHIHE------TIVHSAVSTNAVDCVQLLLS- 231
+ PLH A + + + N+ ++ T ++ A D V++L +
Sbjct: 69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQ 128
Query: 232 LQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYV 291
I N N G + LH AA +G ++ +L G A D++ E++ A +A
Sbjct: 129 PNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKG-ARTDLRNIEKK-LAFDMATNAACA 186
Query: 292 ECLRILLENHANCNERNHKEQIPLHLAAK 320
L+ A N ++ + +
Sbjct: 187 SLLKKKQGTDAVRTLSNAEDYLDDEDSDL 215
Score = 130 bits (329), Expect = 2e-34
Identities = 34/184 (18%), Positives = 56/184 (30%), Gaps = 10/184 (5%)
Query: 236 PNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLR 295
P G + A + D+ T T G R
Sbjct: 5 PPKPVKPGQVKVFRALYTFEPRTPDELYIEE-GDIIYITDMSD-TNWWKGTSKG-----R 57
Query: 296 ILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKN 355
L E+ PLH AAK ++ + L VN D T L+ +
Sbjct: 58 TGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGG 117
Query: 356 ILSVHPLEILL-KWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSS 414
+ +E+L + +N ++ G + +H AA + V L+ GA +
Sbjct: 118 HKDI--VEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKL 175
Query: 415 ALSI 418
A +
Sbjct: 176 AFDM 179
Score = 86.1 bits (214), Expect = 4e-19
Identities = 22/143 (15%), Positives = 34/143 (23%), Gaps = 11/143 (7%)
Query: 123 TALLWCVFVKREDLLDALHQLGADL-SNDKYG--ALHLAAFNGSIKGCSWLMLH-GHDIN 178
L L + DK G AL+ A G L ++N
Sbjct: 75 NPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELN 134
Query: 179 FT-KDSYTPLHFAVLGNYVDCAKFLIKNKAHIHE------TIVHSAVSTNAVDCVQLLLS 231
K T LH A Y D + L+ A A + ++
Sbjct: 135 QQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQG 194
Query: 232 LQINPNVLNNKGVSPLHIAADRG 254
+ N + +
Sbjct: 195 TDAVRTLSNAEDYLDDEDSDLEH 217
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 161 bits (410), Expect = 2e-45
Identities = 55/253 (21%), Positives = 99/253 (39%), Gaps = 34/253 (13%)
Query: 154 ALHLAAFNGSIKGCSWLMLHGHDINF-TKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHET 212
+LA + ++ +DS T LH+A + + +FL++
Sbjct: 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGV----- 64
Query: 213 IVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDI 272
N ++ G SPLHIAA G +KA+L G A V+
Sbjct: 65 ----------------------PVNDKDDAGWSPLHIAASAGXDEIVKALLVKG-AHVNA 101
Query: 273 KTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLR 332
+ T LH AA E +LLE AN + ++H + +H AA +++ + +LL
Sbjct: 102 VNQNGC-TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF 160
Query: 333 KGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELS 392
+ N D + TPLH + + + + L+ GA++ + +P+ +A
Sbjct: 161 YKASTNIQDTEGNTPLHLACDEERVEE--AKFLVTQGASIYIENKEEKTPLQVAKGGL-- 216
Query: 393 QCVDCLIMHGADI 405
+ + G +
Sbjct: 217 GLILKRLAEGEEA 229
Score = 150 bits (381), Expect = 2e-41
Identities = 54/238 (22%), Positives = 91/238 (38%), Gaps = 31/238 (13%)
Query: 185 TPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGV 244
+ A G + + ++ +K+ +
Sbjct: 9 MICNLAYSGKLDELKERILADKS---------------------------LATRTDQDSR 41
Query: 245 SPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANC 304
+ LH A G ++ +L G V+ K + LH+AA G E ++ LL A+
Sbjct: 42 TALHWACSAGHTEIVEFLLQLG-VPVNDKDDAGW-SPLHIAASAGXDEIVKALLVKGAHV 99
Query: 305 NERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEI 364
N N PLH AA E MLL G+ +A D + T +H + +K L + + I
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKM--VHI 157
Query: 365 LLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRN 422
LL + A+ N +D G +P+H+A E + L+ GA I + + L +
Sbjct: 158 LLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGG 215
Score = 139 bits (352), Expect = 1e-37
Identities = 54/208 (25%), Positives = 95/208 (45%), Gaps = 4/208 (1%)
Query: 240 NNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLE 299
+ ++A L + IL + ++ R TALH A G+ E + LL+
Sbjct: 4 CVSNIMICNLAYSGKLDELKERILADK-SLATRTDQDSR-TALHWACSAGHTEIVEFLLQ 61
Query: 300 NHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSV 359
N+++ PLH+AA E ++ LL KG+ VNA + + TPLH + SKN +
Sbjct: 62 LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEI 121
Query: 360 HPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSII 419
+LL+ GAN +A+D + + +H AA + V L+ + A + + G++ L +
Sbjct: 122 --AVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179
Query: 420 MRNTPSSISSVRKKLDSSISLQDPEAST 447
+ +SI +++ E T
Sbjct: 180 CDEERVEEAKFLVTQGASIYIENKEEKT 207
Score = 122 bits (308), Expect = 1e-31
Identities = 44/214 (20%), Positives = 81/214 (37%), Gaps = 11/214 (5%)
Query: 280 TALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNA 339
+LA E +L + + + + LH A E +E LL+ G VN
Sbjct: 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 340 SDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLI 399
D +PLH + S + ++ LL GA+VNA + G +P+H AA + L+
Sbjct: 69 KDDAGWSPLHIAASAGXDEI--VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL 126
Query: 400 MHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSSISLQDPEASTKDIELKLN---- 455
GA+ +K ++A+ + + +S ++QD E +T
Sbjct: 127 EGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVE 186
Query: 456 -FKYILQNGPD----GEIGMLKIFQNDGQKEILE 484
K+++ G + + G ++
Sbjct: 187 EAKFLVTQGASIYIENKEEKTPLQVAKGGLGLIL 220
Score = 101 bits (252), Expect = 3e-24
Identities = 53/220 (24%), Positives = 92/220 (41%), Gaps = 35/220 (15%)
Query: 123 TALLWCVFVKREDLLDALHQLGADL-SNDKYG--ALHLAAFNGSIKGCSWLMLHGHDINF 179
TAL W ++++ L QLG + D G LH+AA G + L++ G +N
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA 101
Query: 180 -TKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNV 238
++ TPLH+A N + A L++ A NP+
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGA---------------------------NPDA 134
Query: 239 LNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILL 298
++ + +H AA +G + + +L A +I+ E T LHLA + VE + L+
Sbjct: 135 KDHYDATAMHRAAAKGNLKMVHILLFYK-ASTNIQDTEGN-TPLHLACDEERVEEAKFLV 192
Query: 299 ENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVN 338
A+ N +E+ PL +A + + L +G + +
Sbjct: 193 TQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEAS 230
Score = 59.5 bits (144), Expect = 5e-10
Identities = 30/134 (22%), Positives = 51/134 (38%), Gaps = 12/134 (8%)
Query: 115 KASQAEKTTALLWCVFVKREDLLDALHQLGADL---SNDKYGALHLAAFNGSIKGCSWLM 171
A T L + R ++ L + GA+ + A+H AA G++K L+
Sbjct: 100 NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL 159
Query: 172 LHGHDINFT-KDSYTPLHFAVLGNYVDCAKFLIKNKAHIHE------TIVHSAVSTNAVD 224
+ N + TPLH A V+ AKFL+ A I+ T + A +
Sbjct: 160 FYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVA--KGGLG 217
Query: 225 CVQLLLSLQINPNV 238
+ L+ ++
Sbjct: 218 LILKRLAEGEEASM 231
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 161 bits (409), Expect = 6e-45
Identities = 41/282 (14%), Positives = 85/282 (30%), Gaps = 47/282 (16%)
Query: 108 EMATLFSKASQAEKTTALLWCVFVKREDLLDALHQLGADLSNDKYGALHLAAFNGSIKGC 167
E+ + + E L + AD+ ++ AA +
Sbjct: 2 EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKAD-EQA 60
Query: 168 SWLMLHGHDINFTKDSY--TPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDC 225
+L D++ D T L F C + L + A + + D
Sbjct: 61 LSQLLEDRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADL-----------DHRD- 107
Query: 226 VQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLA 285
G++ LH+AA ++A+++ G AD++++ + TAL LA
Sbjct: 108 --------------MRGGLTALHMAAGYVRPEVVEALVELG-ADIEVEDERGL-TALELA 151
Query: 286 AENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNR 345
E ++ ++ I + + E E++ ++G +
Sbjct: 152 REILKTTPKGNPMQFGRR---IGLEKVINVLEGQVFEYAEVDEIVEKRG--------KGK 200
Query: 346 TPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAA 387
+ K+ + A A+D + A
Sbjct: 201 DVEYLVRWKD--GGDCEWVKGVHVAEDVAKD--YEDGLEYAV 238
Score = 154 bits (391), Expect = 2e-42
Identities = 37/270 (13%), Positives = 80/270 (29%), Gaps = 45/270 (16%)
Query: 139 ALHQLGADLSNDKYGALHLAAFNGSIKGCSWLMLHGHDINFTKDSYTPLHFAVLGNYVDC 198
+G+ + + + +G SW+ + + TP A
Sbjct: 4 NKI-IGSRTAGEGAMEYLIEWKDGHSP--SWVPSSYIAADVVSEYETPWWTAARKADEQA 60
Query: 199 AKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISC 258
L+ + + ++ G + L A G C
Sbjct: 61 LSQLL-----------EDR-----------------DVDAVDENGRTALLFVAGLGSDKC 92
Query: 259 LKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLA 318
++ + ++G AD+D + +TALH+AA E + L+E A+ + + L LA
Sbjct: 93 VRLLAEAG-ADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 151
Query: 319 AKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIF 378
+ ++ G ++ + V + +
Sbjct: 152 REILKTTPKGNPMQFGRRIGLEK---VINVLEGQVFEYAEV----------DEIVEKRGK 198
Query: 379 GYSPIHIAALSELSQCVDCLIMHGADISSK 408
G ++ + C +H A+ +K
Sbjct: 199 GKDVEYLVRWKDGGDCEWVKGVHVAEDVAK 228
Score = 119 bits (301), Expect = 2e-30
Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 7/140 (5%)
Query: 280 TALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNA 339
+ ++G+ A+ + P AA+ + + LL + V+A
Sbjct: 17 MEYLIEWKDGHSPSWVPSSYIAADVVSEY---ETPWWTAARKADEQALSQLL-EDRDVDA 72
Query: 340 SDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDI-FGYSPIHIAALSELSQCVDCL 398
D + RT L + +L + GA+++ RD+ G + +H+AA + V+ L
Sbjct: 73 VDENGRTALLFVAGLGSDKC--VRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL 130
Query: 399 IMHGADISSKTPSGSSALSI 418
+ GADI + G +AL +
Sbjct: 131 VELGADIEVEDERGLTALEL 150
Score = 90.0 bits (224), Expect = 3e-20
Identities = 32/177 (18%), Positives = 54/177 (30%), Gaps = 20/177 (11%)
Query: 123 TALLWCVFVKREDLLDALHQLGADL--SNDKYG--ALHLAAFNGSIKGCSWLMLHGHDIN 178
TALL+ + + + L + GADL + + G ALH+AA + L+ G DI
Sbjct: 79 TALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE 138
Query: 179 F-TKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHE---TIVHSAVSTNAVDCVQLLLSLQI 234
+ T L A ++ I V + +++
Sbjct: 139 VEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEK--- 195
Query: 235 NPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYV 291
KG ++ + C A+ K E L A +
Sbjct: 196 -----RGKGKDVEYLVRWKDGGDCEWVKGVHV-AEDVAKDYE---DGLEYAVAESVI 243
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 155 bits (393), Expect = 7e-43
Identities = 42/257 (16%), Positives = 83/257 (32%), Gaps = 49/257 (19%)
Query: 150 DKYG--ALHLAAFNGSIKGCSWLMLHGHDINFTKDSYTPLHFAVLGNYVDCAKFLIKNKA 207
+ G +L K S + HG + F L + L D + +I
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVD 61
Query: 208 HIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGM 267
+P++ N++G++ LH A G +K ++ G
Sbjct: 62 ---------------------------DPSLPNDEGITALHNAVCAGHTEIVKFLVQFG- 93
Query: 268 ADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQ---IPLHLAAKCQSV 324
+V+ + T LH AA V+ + L+E+ A + + +
Sbjct: 94 VNVNAADSDGW-TPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYT 152
Query: 325 ECMEMLLRKGSQVNASDCDNRTPLHASLSKN-------------ILSVHPLEILLKWGAN 371
+C + L ++ + L +N I+ + + W A
Sbjct: 153 QCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWAR 212
Query: 372 VNARDIFGYSPIHIAAL 388
+N ++ GY P ++ L
Sbjct: 213 LNDKE--GYVPRNLLGL 227
Score = 139 bits (353), Expect = 2e-37
Identities = 37/179 (20%), Positives = 65/179 (36%), Gaps = 8/179 (4%)
Query: 241 NKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLEN 300
G L L + G + +K + L ++ G + ++ ++
Sbjct: 3 ITGQVSLPPGKRTNLRKTGSERIAHG---MRVKFNPLPLALLLDSSLEGEFDLVQRIIYE 59
Query: 301 HANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVH 360
+ + N + LH A E ++ L++ G VNA+D D TPLH + S N + V
Sbjct: 60 VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQV- 118
Query: 361 PLEILLKWGANVNAR---DIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSAL 416
+ L++ GA V A D+ + +QC L + AL
Sbjct: 119 -CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYAL 176
Score = 98.1 bits (245), Expect = 4e-23
Identities = 39/186 (20%), Positives = 62/186 (33%), Gaps = 21/186 (11%)
Query: 123 TALLWCVFVKREDLLDALHQLGADLS-NDKYG--ALHLAAFNGSIKGCSWLMLHGHDINF 179
LL DL+ + D S + G ALH A G + +L+ G ++N
Sbjct: 39 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 98
Query: 180 -TKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHE---------TIVHSAVSTNAVDCVQLL 229
D +TPLH A N V KFL+++ A + + C Q L
Sbjct: 99 ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158
Query: 230 LSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTK-ERRVTALHLAAEN 288
+Q ++N + L + + + I + + A N
Sbjct: 159 YGVQEKMGIMNKGVIYALWDYEPQN----DDELPMKEGDCMTIIHREDEDEIEWWWARLN 214
Query: 289 ---GYV 291
GYV
Sbjct: 215 DKEGYV 220
Score = 37.2 bits (87), Expect = 0.015
Identities = 8/41 (19%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 376 DIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSAL 416
+I G + + L + I HG + P + L
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRV-KFNPLPLALL 41
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 151 bits (384), Expect = 3e-42
Identities = 35/169 (20%), Positives = 66/169 (39%), Gaps = 3/169 (1%)
Query: 240 NNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLE 299
+ + + + G ++ LD+ D++ + LH A G + +L+
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGF-SPLHWACREGRSAVVEMLIM 60
Query: 300 NHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSV 359
A N N + PLHLAA + ++ LL+ + +NA + PLH + V
Sbjct: 61 RGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQV 120
Query: 360 HPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSK 408
E L+ GA V+ + +G P+ A + G +++
Sbjct: 121 --AEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRI 167
Score = 138 bits (350), Expect = 8e-38
Identities = 38/208 (18%), Positives = 74/208 (35%), Gaps = 36/208 (17%)
Query: 180 TKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVL 239
+ + + + + N + + N
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTEN--------------------------DLNQG 35
Query: 240 NNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLE 299
++ G SPLH A G + ++ ++ G A +++ + T LHLAA +G+ + ++ LL+
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLIMRG-ARINVMNRGDD-TPLHLAASHGHRDIVQKLLQ 93
Query: 300 NHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSV 359
A+ N N +PLH A + E L+ G+ V+ + P+ + + +
Sbjct: 94 YKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELL 153
Query: 360 HPLEILLKWGANVNARDIFGYSPIHIAA 387
E K G N+N P
Sbjct: 154 --RERAEKMGQNLNRI------PYKDTF 173
Score = 137 bits (347), Expect = 2e-37
Identities = 39/181 (21%), Positives = 61/181 (33%), Gaps = 16/181 (8%)
Query: 148 SNDKYGALHLAAFNGSIKGCSWLMLHG-HDIN-FTKDSYTPLHFAVLGNYVDCAKFLIKN 205
S + + G+ + + +D+N ++PLH+A + LI
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61
Query: 206 KAHIHE------TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCL 259
A I+ T +H A S D VQ LL + + N +N G PLH A G
Sbjct: 62 GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVA 121
Query: 260 KAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAA 319
+ ++ +G A V I K + A + N N IP
Sbjct: 122 EDLVANG-ALVSICNKYGE-MPVDKAKAPLRELLRERAEKMGQNLNR------IPYKDTF 173
Query: 320 K 320
Sbjct: 174 W 174
Score = 132 bits (335), Expect = 9e-36
Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 3/140 (2%)
Query: 280 TALHLAAENGYVECLRILLENHANC-NERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVN 338
+ G +R+ L+N N N+ + PLH A + +EML+ +G+++N
Sbjct: 7 DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN 66
Query: 339 ASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCL 398
+ + TPLH + S + ++ LL++ A++NA + G P+H A Q + L
Sbjct: 67 VMNRGDDTPLHLAASHGHRDI--VQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDL 124
Query: 399 IMHGADISSKTPSGSSALSI 418
+ +GA +S G +
Sbjct: 125 VANGALVSICNKYGEMPVDK 144
Score = 69.0 bits (170), Expect = 1e-13
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 4/82 (4%)
Query: 140 LHQLGADL-SNDKYG--ALHLAAFNGSIKGCSWLMLHGHDINF-TKDSYTPLHFAVLGNY 195
L Q AD+ + +++G LH A F G + L+ +G ++ K P+ A
Sbjct: 91 LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLR 150
Query: 196 VDCAKFLIKNKAHIHETIVHSA 217
+ K +++
Sbjct: 151 ELLRERAEKMGQNLNRIPYKDT 172
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 151 bits (383), Expect = 1e-41
Identities = 43/252 (17%), Positives = 82/252 (32%), Gaps = 51/252 (20%)
Query: 154 ALHLAAFNGSIKG-CSWLMLHGHDINF-TKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHE 211
L LAA ++ L G +++ T LH A L + ++ A L++ +
Sbjct: 6 PLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVF 65
Query: 212 TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVD 271
+G + LHIA ++ ++A+L G A V
Sbjct: 66 E----------------------PMTSELYEGQTALHIAVINQNVNLVRALLARG-ASVS 102
Query: 272 IKTKERRV------------TALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAA 319
+ L AA G E +R+L+E+ A+ ++ LH+
Sbjct: 103 ARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILI 162
Query: 320 KCQSVE----CMEMLLRKGSQVNA------SDCDNRTPLH-ASLSKNILSVHPLEILLKW 368
+ +LL + + TP A + NI+ + L++
Sbjct: 163 LQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMF---QHLMQK 219
Query: 369 GANVNARDIFGY 380
++ A +
Sbjct: 220 RKHIAAAHHHHH 231
Score = 134 bits (339), Expect = 1e-35
Identities = 42/194 (21%), Positives = 75/194 (38%), Gaps = 25/194 (12%)
Query: 243 GVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHA 302
SPL +AA + L +L +V + TALH+AA +E +L+E
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGE-TALHIAALYDNLEAAMVLMEAAP 61
Query: 303 N-----CNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN------------- 344
++ Q LH+A Q+V + LL +G+ V+A +
Sbjct: 62 ELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYG 121
Query: 345 RTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSE----LSQCVDCLIM 400
PL + + + +L++ GA++ A+D G + +HI L Q + L+
Sbjct: 122 EHPLSFAACVGSEEI--VRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLS 179
Query: 401 HGADISSKTPSGSS 414
+ K+
Sbjct: 180 YDGGDHLKSLELVP 193
Score = 115 bits (290), Expect = 3e-29
Identities = 42/157 (26%), Positives = 71/157 (45%), Gaps = 23/157 (14%)
Query: 280 TALHLAAENGYVECLRILLENH-ANCNERNHKEQIPLHLAAKCQSVECMEMLLRKG---- 334
+ L LAA+ V+ L LL+ ++R + LH+AA ++E +L+
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 335 -SQVNASDCDNRTPLH-ASLSKNILSVHPLEILLKWGANVNARDI-------------FG 379
+ + + +T LH A +++N+ V LL GA+V+AR +G
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLV---RALLARGASVSARATGSVFHYRPHNLIYYG 121
Query: 380 YSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSAL 416
P+ AA + V LI HGADI ++ G++ L
Sbjct: 122 EHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVL 158
Score = 99 bits (250), Expect = 7e-24
Identities = 33/221 (14%), Positives = 60/221 (27%), Gaps = 59/221 (26%)
Query: 123 TALLWCVFVKREDLLDALHQLGADLSN------DKYG--ALHLAAFNGSIKGCSWLMLHG 174
TAL + L + +L G ALH+A N ++ L+ G
Sbjct: 39 TALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARG 98
Query: 175 HDIN--------------FTKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVST 220
++ PL FA + + LI++ A
Sbjct: 99 ASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGA------------- 145
Query: 221 NAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRG----LISCLKAILDSGMADVDIKTKE 276
+ ++ G + LHI + +L +K+ E
Sbjct: 146 --------------DIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYD-GGDHLKSLE 190
Query: 277 RRV-----TALHLAAENGYVECLRILLENHANCNERNHKEQ 312
T LA G + + L++ + +H
Sbjct: 191 LVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHHHHH 231
Score = 33.3 bits (77), Expect = 0.21
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 377 IFGYSPIHIAALSELSQCVD-CLIMHGADISSKTPSGSSAL 416
+ SP+ +AA Q + L G ++ + G +AL
Sbjct: 1 MIWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETAL 41
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 145 bits (368), Expect = 2e-40
Identities = 42/198 (21%), Positives = 78/198 (39%), Gaps = 30/198 (15%)
Query: 185 TPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGV 244
+H +D K ++ + V N + +G
Sbjct: 4 LSIHQLAAQGELDQLKEHLRKGD----------------NLV----------NKPDERGF 37
Query: 245 SPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANC 304
+PL A+ G I ++ +L+ G AD I KER +AL LA+ GY + + +LLE +
Sbjct: 38 TPLIWASAFGEIETVRFLLEWG-ADPHILAKERE-SALSLASTGGYTDIVGLLLERDVDI 95
Query: 305 NERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEI 364
N + PL A + V+C+E LL +G+ + TP+ +++ V ++
Sbjct: 96 NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKV--QQV 153
Query: 365 LLKWGANVNARDIFGYSP 382
+ + ++ P
Sbjct: 154 IENHILKLFQSNLVPADP 171
Score = 142 bits (362), Expect = 2e-39
Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 3/167 (1%)
Query: 246 PLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCN 305
+H A +G + LK L G V+ + T L A+ G +E +R LLE A+ +
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGF-TPLIWASAFGEIETVRFLLEWGADPH 63
Query: 306 ERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEIL 365
+ + L LA+ + + +LL + +N D + TPL ++ N + +E L
Sbjct: 64 ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKC--VEAL 121
Query: 366 LKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSG 412
L GA++ GY+P+ +A + + H +
Sbjct: 122 LARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVP 168
Score = 138 bits (351), Expect = 5e-38
Identities = 34/196 (17%), Positives = 69/196 (35%), Gaps = 31/196 (15%)
Query: 154 ALHLAAFNGSIKGCSWLMLHGHDINFTKDSY--TPLHFAVLGNYVDCAKFLIKNKAHIHE 211
++H A G + + G ++ D TPL +A ++ +FL++ A
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA---- 60
Query: 212 TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVD 271
+P++L + S L +A+ G + +L+ D++
Sbjct: 61 -----------------------DPHILAKERESALSLASTGGYTDIVGLLLERD-VDIN 96
Query: 272 IKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLL 331
I T L A +V+C+ LL A+ P+ LA + +++
Sbjct: 97 IYDWNGG-TPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIE 155
Query: 332 RKGSQVNASDCDNRTP 347
++ S+ P
Sbjct: 156 NHILKLFQSNLVPADP 171
Score = 127 bits (322), Expect = 4e-34
Identities = 30/140 (21%), Positives = 65/140 (46%), Gaps = 3/140 (2%)
Query: 280 TALHLAAENGYVECLRILLENHANC-NERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVN 338
++H A G ++ L+ L N N+ + + PL A+ +E + LL G+ +
Sbjct: 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63
Query: 339 ASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCL 398
+ + L + + + + +LL+ ++N D G +P+ A +CV+ L
Sbjct: 64 ILAKERESALSLASTGGYTDI--VGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121
Query: 399 IMHGADISSKTPSGSSALSI 418
+ GAD++++ SG + + +
Sbjct: 122 LARGADLTTEADSGYTPMDL 141
Score = 122 bits (309), Expect = 3e-32
Identities = 39/197 (19%), Positives = 70/197 (35%), Gaps = 34/197 (17%)
Query: 123 TALLWCVFVKREDLLDALHQLGADLSN--DKYG--ALHLAAFNGSIKGCSWLMLHGHDIN 178
++ D L + G +L N D+ G L A+ G I+ +L+ G D +
Sbjct: 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63
Query: 179 F-TKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPN 237
K+ + L A G Y D L++ + N
Sbjct: 64 ILAKERESALSLASTGGYTDIVGLLLERDV---------------------------DIN 96
Query: 238 VLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRIL 297
+ + G +PL A + C++A+L G AD+ + T + LA GY + +++
Sbjct: 97 IYDWNGGTPLLYAVRGNHVKCVEALLARG-ADLTTEADSGY-TPMDLAVALGYRKVQQVI 154
Query: 298 LENHANCNERNHKEQIP 314
+ + N P
Sbjct: 155 ENHILKLFQSNLVPADP 171
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 143 bits (363), Expect = 3e-39
Identities = 40/228 (17%), Positives = 84/228 (36%), Gaps = 36/228 (15%)
Query: 180 TKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVL 239
T + L A + + L + +
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTTY---------------------------QVDEV 35
Query: 240 NNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLE 299
+ +G +PL+IA I KA++D G AD++++ + A G E L +L+
Sbjct: 36 DTEGNTPLNIAVHNNDIEIAKALIDRG-ADINLQNSISD-SPYLYAGAQGRTEILAYMLK 93
Query: 300 NHA-NCNERNHKEQIPLHLAAKCQSVECMEMLLRKGS-QVNASDCDNRTPLH-ASLSKNI 356
+ + N+ N L AA+ ++ +++LL G ++ + T L A +
Sbjct: 94 HATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREG 153
Query: 357 LSVHPLEI---LLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMH 401
++ +I L++ GA+ + +D G + + A ++ L +
Sbjct: 154 NQLY-QDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 137 bits (349), Expect = 3e-37
Identities = 40/186 (21%), Positives = 76/186 (40%), Gaps = 11/186 (5%)
Query: 240 NNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLE 299
+ + L A R + + D+ VD E T L++A N +E + L++
Sbjct: 3 TYEVGALLEAANQRDTKKVKEILQDTT-YQVDEVDTEGN-TPLNIAVHNNDIEIAKALID 60
Query: 300 NHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQ-VNASDCDNRTPLHASLSKNILS 358
A+ N +N P A E + +L+ + +N + L + K +
Sbjct: 61 RGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHID 120
Query: 359 VHPLEILLKWG-ANVNARDIFGYSPIHIAALSELSQ-----CVDCLIMHGADISSKTPSG 412
+++LL+ G +++ ++ FGY+ + A V L+ +GAD S K SG
Sbjct: 121 N--VKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSG 178
Query: 413 SSALSI 418
+A+
Sbjct: 179 RTAMDY 184
Score = 113 bits (285), Expect = 1e-28
Identities = 31/149 (20%), Positives = 63/149 (42%), Gaps = 5/149 (3%)
Query: 272 IKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLL 331
+KT E L A + + IL + +E + + PL++A +E + L+
Sbjct: 1 MKTYEVG-ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALI 59
Query: 332 RKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGA-NVNARDIFGYSPIHIAALSE 390
+G+ +N + + +P + ++ + L +LK ++N + +G + + AA
Sbjct: 60 DRGADINLQNSISDSPYLYAGAQGRTEI--LAYMLKHATPDLNKHNRYGGNALIPAAEKG 117
Query: 391 LSQCVDCLIMHG-ADISSKTPSGSSALSI 418
V L+ G DI + G +AL
Sbjct: 118 HIDNVKLLLEDGREDIDFQNDFGYTALIE 146
Score = 109 bits (276), Expect = 1e-27
Identities = 43/200 (21%), Positives = 83/200 (41%), Gaps = 21/200 (10%)
Query: 120 EKTTALLWCVFVKREDLLDALHQLGADL-SNDKYG--ALHLAAFNGSIKGCSWLMLHGHD 176
E L + + + L + D G L++A N I+ L+ G D
Sbjct: 5 EVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD 64
Query: 177 INFTKDSY--TPLHFAVLGNYVDCAKFLIKNKAH-IHE------TIVHSAVSTNAVDCVQ 227
IN ++S +P +A + +++K+ +++ + A +D V+
Sbjct: 65 IN-LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVK 123
Query: 228 LLLSL-QINPNVLNNKGVSPLHIAA-----DRGLISCLKAILDSGMADVDIKTKERRVTA 281
LLL + + + N+ G + L A ++ +K ++++G AD IK R TA
Sbjct: 124 LLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENG-ADQSIKDNSGR-TA 181
Query: 282 LHLAAENGYVECLRILLENH 301
+ A + GY E +IL + +
Sbjct: 182 MDYANQKGYTEISKILAQYN 201
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 141 bits (359), Expect = 6e-39
Identities = 34/176 (19%), Positives = 61/176 (34%), Gaps = 9/176 (5%)
Query: 234 INPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVEC 293
I + +G I G ADV + + T AA +
Sbjct: 5 IIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIA-ADVVSEYE----TPWWTAARKADEQA 59
Query: 294 LRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDC-DNRTPLHASL 352
L LLE + + + + L A S +C+ +L G+ ++ D T LH +
Sbjct: 60 LSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 118
Query: 353 SKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSK 408
V +E L++ GA++ D G + + +A + + G I +
Sbjct: 119 GYVRPEV--VEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLE 172
Score = 130 bits (330), Expect = 5e-35
Identities = 34/198 (17%), Positives = 61/198 (30%), Gaps = 36/198 (18%)
Query: 181 KDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLN 240
+ + A +
Sbjct: 12 GEGAMEYLIEWKDGHSPSWVPSSYIAADV------------------------------V 41
Query: 241 NKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLEN 300
++ +P AA + L +L DVD + R TAL A G +C+R+L E
Sbjct: 42 SEYETPWWTAARKADEQALSQLL-ED-RDVDAVDENGR-TALLFVAGLGSDKCVRLLAEA 98
Query: 301 HANCNERNHKE-QIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSV 359
A+ + R+ + LH+AA E +E L+ G+ + D T L +
Sbjct: 99 GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL--KT 156
Query: 360 HPLEILLKWGANVNARDI 377
P +++G + +
Sbjct: 157 TPKGNPMQFGRRIGLEKV 174
Score = 127 bits (321), Expect = 8e-34
Identities = 31/199 (15%), Positives = 65/199 (32%), Gaps = 31/199 (15%)
Query: 143 LGADLSNDKYGALHLAAFNGSIKGCSWLMLHGHDINFTKDSYTPLHFAVLGNYVDCAKFL 202
+G+ + + + +G SW+ + + TP A L
Sbjct: 6 IGSRTAGEGAMEYLIEWKDGHSP--SWVPSSYIAADVVSEYETPWWTAARKADEQALSQL 63
Query: 203 IKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAI 262
+ + + ++ G + L A G C++ +
Sbjct: 64 L-----------EDR-----------------DVDAVDENGRTALLFVAGLGSDKCVRLL 95
Query: 263 LDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQ 322
++G AD+D + +TALH+AA E + L+E A+ + + L LA +
Sbjct: 96 AEAG-ADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL 154
Query: 323 SVECMEMLLRKGSQVNASD 341
++ G ++
Sbjct: 155 KTTPKGNPMQFGRRIGLEK 173
Score = 123 bits (311), Expect = 2e-32
Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 32/186 (17%)
Query: 123 TALLWCVFVKREDLLDALHQLGADLSNDKYGALHLAAFNGSIKGCSWLMLHGHDINFTKD 182
L + AD+ ++ AA + +L D++ D
Sbjct: 16 MEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKAD-EQALSQLLEDRDVD-AVD 73
Query: 183 SY--TPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLN 240
T L F C + L + A + + D
Sbjct: 74 ENGRTALLFVAGLGSDKCVRLLAEAGADL-----------DHRD---------------M 107
Query: 241 NKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLEN 300
G++ LH+AA ++A+++ G AD++++ + TAL LA E ++
Sbjct: 108 RGGLTALHMAAGYVRPEVVEALVELG-ADIEVEDERGL-TALELAREILKTTPKGNPMQF 165
Query: 301 HANCNE 306
Sbjct: 166 GRRIGL 171
Score = 119 bits (300), Expect = 5e-31
Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 7/140 (5%)
Query: 280 TALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNA 339
+ ++G+ A+ + P AA+ + + LL + V+A
Sbjct: 16 MEYLIEWKDGHSPSWVPSSYIAADVVSEY---ETPWWTAARKADEQALSQLL-EDRDVDA 71
Query: 340 SDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDI-FGYSPIHIAALSELSQCVDCL 398
D + RT L + +L + GA+++ RD+ G + +H+AA + V+ L
Sbjct: 72 VDENGRTALLFVAGLGSDKC--VRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL 129
Query: 399 IMHGADISSKTPSGSSALSI 418
+ GADI + G +AL +
Sbjct: 130 VELGADIEVEDERGLTALEL 149
Score = 85.2 bits (212), Expect = 3e-19
Identities = 23/120 (19%), Positives = 41/120 (34%), Gaps = 7/120 (5%)
Query: 300 NHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSV 359
N + + + + K + V + + TP + K
Sbjct: 3 NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQA 59
Query: 360 HPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTP-SGSSALSI 418
L LL+ +V+A D G + + A +CV L GAD+ + G +AL +
Sbjct: 60 --LSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM 116
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 140 bits (357), Expect = 6e-39
Identities = 40/164 (24%), Positives = 73/164 (44%), Gaps = 4/164 (2%)
Query: 240 NNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLE 299
N++ L AA G + +K + + + T LH AA V + LL+
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQS-TPLHFAAGYNRVSVVEYLLQ 63
Query: 300 NHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSV 359
+ A+ + ++ +PLH A E E+L++ G+ VN +D TPLH + +K +
Sbjct: 64 HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEI 123
Query: 360 HPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGA 403
++LL+ GA+ ++ G +P+ + + D L A
Sbjct: 124 --CKLLLQHGADPTKKNRDGNTPLDLVKDGDT-DIQDLLRGDAA 164
Score = 135 bits (344), Expect = 4e-37
Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 7/156 (4%)
Query: 268 ADVDIKTKERRVTALHLAAENGYVECLRILLENH-ANCNERNHKEQIPLHLAAKCQSVEC 326
A + + L AA+ G VE ++ L NC + ++ PLH AA V
Sbjct: 2 AMGNSEAD----RQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57
Query: 327 MEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIA 386
+E LL+ G+ V+A D PLH + S V E+L+K GA VN D++ ++P+H A
Sbjct: 58 VEYLLQHGADVHAKDKGGLVPLHNACSYGHYEV--AELLVKHGAVVNVADLWKFTPLHEA 115
Query: 387 ALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRN 422
A + L+ HGAD + K G++ L ++
Sbjct: 116 AAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDG 151
Score = 118 bits (298), Expect = 5e-31
Identities = 42/193 (21%), Positives = 73/193 (37%), Gaps = 32/193 (16%)
Query: 144 GADLSNDKYGALHLAAFNGSIKGCSWLM-LHGHDIN-FTKDSYTPLHFAVLGNYVDCAKF 201
GA +++ L AA G ++ L + + TPLHFA N V ++
Sbjct: 1 GAMGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEY 60
Query: 202 LIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKA 261
L+++ A +H + G+ PLH A G +
Sbjct: 61 LLQHGADVHAK---------------------------DKGGLVPLHNACSYGHYEVAEL 93
Query: 262 ILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKC 321
++ G A V++ + T LH AA G E ++LL++ A+ ++N PL L
Sbjct: 94 LVKHG-AVVNVADLWKF-TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD- 150
Query: 322 QSVECMEMLLRKG 334
+ ++L
Sbjct: 151 GDTDIQDLLRGDA 163
Score = 57.0 bits (139), Expect = 1e-09
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 144 GADL-SNDKYG--ALHLAAFNGSIKGCSWLMLHGHDINF-TKDSYTPLHFAVLGNYVDCA 199
GA + D + LH AA G + C L+ HG D +D TPL G+ D
Sbjct: 98 GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGD-TDIQ 156
Query: 200 KFLIKNKA 207
L + A
Sbjct: 157 DLLRGDAA 164
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 140 bits (357), Expect = 7e-39
Identities = 36/167 (21%), Positives = 67/167 (40%), Gaps = 4/167 (2%)
Query: 243 GVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHA 302
+H A +G + L ++ ++ +E T L AA +G + + LL+N A
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQE-NVINHTDEEGF-TPLMWAAAHGQIAVVEFLLQNGA 60
Query: 303 NCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPL 362
+ + L LA + ++MLL G VN D + TPL ++ N + +
Sbjct: 61 DPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKC--V 118
Query: 363 EILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKT 409
++LL+ GA+ GY+ + +A + H +
Sbjct: 119 KMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNI 165
Score = 139 bits (352), Expect = 3e-38
Identities = 37/192 (19%), Positives = 70/192 (36%), Gaps = 31/192 (16%)
Query: 185 TPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGV 244
+H + I+ + N + +G
Sbjct: 5 LSVHQLAAQGEMLYLATRIEQEN---------------------------VINHTDEEGF 37
Query: 245 SPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANC 304
+PL AA G I+ ++ +L +G AD + K R +AL LA GY + +++LL+ +
Sbjct: 38 TPLMWAAAHGQIAVVEFLLQNG-ADPQLLGKGRE-SALSLACSKGYTDIVKMLLDCGVDV 95
Query: 305 NERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEI 364
NE + PL A V+C++MLL G+ + +++ SV ++
Sbjct: 96 NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSV--QQV 153
Query: 365 LLKWGANVNARD 376
+ +
Sbjct: 154 IESHLLKLLQNI 165
Score = 135 bits (344), Expect = 5e-37
Identities = 37/189 (19%), Positives = 72/189 (38%), Gaps = 30/189 (15%)
Query: 154 ALHLAAFNGSIKGCSWLMLHGHDINFT-KDSYTPLHFAVLGNYVDCAKFLIKNKAHIHET 212
++H A G + + + + IN T ++ +TPL +A + +FL++N A
Sbjct: 6 SVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA----- 60
Query: 213 IVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDI 272
+P +L S L +A +G +K +LD G DV+
Sbjct: 61 ----------------------DPQLLGKGRESALSLACSKGYTDIVKMLLDCG-VDVNE 97
Query: 273 KTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLR 332
T L A +V+C+++LLE+ A+ + LA +++
Sbjct: 98 YDWNGG-TPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIES 156
Query: 333 KGSQVNASD 341
++ +
Sbjct: 157 HLLKLLQNI 165
Score = 132 bits (334), Expect = 9e-36
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Query: 280 TALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNA 339
++H A G + L +E N + + PL AA + +E LL+ G+
Sbjct: 5 LSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 64
Query: 340 SDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLI 399
+ L + SK + +++LL G +VN D G +P+ A +CV L+
Sbjct: 65 LGKGRESALSLACSKGYTDI--VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLL 122
Query: 400 MHGADISSKTPSGSSALSI 418
GAD + +T SG +++ +
Sbjct: 123 ESGADPTIETDSGYNSMDL 141
Score = 80.9 bits (201), Expect = 7e-18
Identities = 38/158 (24%), Positives = 59/158 (37%), Gaps = 32/158 (20%)
Query: 123 TALLWCVFVKREDLLDALHQLGADL-SNDKYG--ALHLAAFNGSIKGCSWLMLHGHDINF 179
T L+W + +++ L Q GAD K AL LA G L+ G D+N
Sbjct: 38 TPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 97
Query: 180 -TKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNV 238
+ TPL +AV GN+V C K L+++ A +P +
Sbjct: 98 YDWNGGTPLLYAVHGNHVKCVKMLLESGA---------------------------DPTI 130
Query: 239 LNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKE 276
+ G + + +A G S + I + KE
Sbjct: 131 ETDSGYNSMDLAVALGYRSVQQVIESHL-LKLLQNIKE 167
Score = 32.7 bits (76), Expect = 0.20
Identities = 6/40 (15%), Positives = 10/40 (25%)
Query: 379 GYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSI 418
+H A + I I+ G + L
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMW 42
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 138 bits (351), Expect = 2e-37
Identities = 32/201 (15%), Positives = 62/201 (30%), Gaps = 17/201 (8%)
Query: 200 KFLIKNKAHIHE---------TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIA 250
+ +++ + ++ A T ++ VQ + +P+ N +G++ LH A
Sbjct: 2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNA 61
Query: 251 ADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHK 310
S + ++ +G A+V+ T LH AA L+++ A
Sbjct: 62 ICGANYSIVDFLITAG-ANVNSPDSHGW-TPLHCAASCNDTVICMALVQHGAAIFATTLS 119
Query: 311 E-QIPLHLAAKCQS--VECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLK 367
+ + +C L + + L S L
Sbjct: 120 DGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDY-SAEFGDE--LSFREG 176
Query: 368 WGANVNARDIFGYSPIHIAAL 388
V RD + AAL
Sbjct: 177 ESVTVLRRDGPEETDWWWAAL 197
Score = 129 bits (326), Expect = 5e-34
Identities = 30/197 (15%), Positives = 60/197 (30%), Gaps = 11/197 (5%)
Query: 226 VQLLLSLQINPNVLNNKGVSP---LHIAADRGLISCLKAILDSGMADVDIKTKERRVTAL 282
++ +L +P ++P L AA G + ++ + D +E TAL
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEM-NDPSQPNEEGI-TAL 58
Query: 283 HLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASD- 341
H A + L+ AN N + PLH AA C L++ G+ + A+
Sbjct: 59 HNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTL 118
Query: 342 CDNRTPLH--ASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLI 399
D T + L ++ + + + + +
Sbjct: 119 SDGATAFEKCDPYREGYADC--ATYLADVEQSMGLMNSGAVYALWDYSAEFGDE-LSFRE 175
Query: 400 MHGADISSKTPSGSSAL 416
+ + +
Sbjct: 176 GESVTVLRRDGPEETDW 192
Score = 127 bits (322), Expect = 2e-33
Identities = 42/235 (17%), Positives = 66/235 (28%), Gaps = 46/235 (19%)
Query: 144 GADL-SNDKYG-----ALHLAAFNGSIKGCSWLMLHGHDINF-TKDSYTPLHFAVLGNYV 196
+ L AA G ++ + +D + ++ T LH A+ G
Sbjct: 8 AGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANY 67
Query: 197 DCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLI 256
FLI A N N ++ G +PLH AA
Sbjct: 68 SIVDFLITAGA---------------------------NVNSPDSHGWTPLHCAASCNDT 100
Query: 257 SCLKAILDSGMADVDIKTKERRVTALHLAA--ENGYVECLRILLENHANCNERNHKEQIP 314
A++ G A + T TA GY +C L + + N
Sbjct: 101 VICMALVQHG-AAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYA 159
Query: 315 LHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLH-ASL-------SKNILSVHP 361
L + E + + V D T A+L +N + P
Sbjct: 160 LWDYSAEFGDE-LSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFP 213
Score = 111 bits (279), Expect = 9e-28
Identities = 36/189 (19%), Positives = 59/189 (31%), Gaps = 21/189 (11%)
Query: 144 GADLSN-DKYG--ALHLAAFNGSIKGCSWLMLHGHDINFT-KDSYTPLHFAVLGNYVDCA 199
D S ++ G ALH A + +L+ G ++N +TPLH A N
Sbjct: 44 MNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVIC 103
Query: 200 KFLIKNKAHIHE-------TIVHSAVST--NAVDCVQLLLSLQINPNVLNNKGVSPLHIA 250
L+++ A I T DC L ++ + ++N+ V L
Sbjct: 104 MALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDY 163
Query: 251 ADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENG---YVECLRILLENHANCNER 307
+ + V + T AA +G YV R +
Sbjct: 164 SAEFGDELS--FREGESVTVLRRDGPEE-TDWWWAALHGQEGYVP--RNYFGLFPRVKPQ 218
Query: 308 NHKEQIPLH 316
K + H
Sbjct: 219 RSKVKHHHH 227
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 135 bits (344), Expect = 1e-36
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 12/183 (6%)
Query: 237 NVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTK-ERRVTALHLAAENGYVECLR 295
+ ++ G I ++ + + D + T L +A G +
Sbjct: 2 SHMDKNGEIVEKIKDEKSI---------NQNLDFLRNYRDSYNRTPLMVACMLGMENAID 52
Query: 296 ILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKN 355
L+EN +++ + L A K + E LL KGS VN D +TPL S+
Sbjct: 53 KLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFG 112
Query: 356 ILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSA 415
+ LL+ GANVN R++ G +P+ +A+ S+ V L+ GADIS++ +G +A
Sbjct: 113 YSEM--SYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTA 170
Query: 416 LSI 418
+
Sbjct: 171 EAS 173
Score = 134 bits (341), Expect = 2e-36
Identities = 40/230 (17%), Positives = 80/230 (34%), Gaps = 39/230 (16%)
Query: 174 GHDINFTKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQ 233
G ++ K+ + FL
Sbjct: 1 GSHMD--KNGEIVEKIKDEKSINQNLDFLR------------------------------ 28
Query: 234 INPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVEC 293
N ++ +PL +A G+ + + ++++ ++ K E TAL A +N +
Sbjct: 29 ---NYRDSYNRTPLMVACMLGMENAIDKLVENF-DKLEDKDIEGS-TALIWAVKNNRLGI 83
Query: 294 LRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLS 353
LL +N N ++ + PL + E LL G+ VN + + TPL +
Sbjct: 84 AEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASK 143
Query: 354 KNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGA 403
+ ++ LL+ GA+++ARD+ G + A + + +
Sbjct: 144 YGRSEI--VKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191
Score = 132 bits (335), Expect = 1e-35
Identities = 43/214 (20%), Positives = 78/214 (36%), Gaps = 38/214 (17%)
Query: 144 GADLSNDKYGALHLAAFNGSIKGCSWLMLHGHDINFTKDSY--TPLHFAVLGNYVDCAKF 201
G+ + + + + +L N +DSY TPL A + +
Sbjct: 1 GSHMDKNGEIVEKIKDEKSINQNLDFL------RN-YRDSYNRTPLMVACMLGMENAIDK 53
Query: 202 LIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKA 261
L++N + +G + L A + +
Sbjct: 54 LVENFD---------------------------KLEDKDIEGSTALIWAVKNNRLGIAEK 86
Query: 262 ILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKC 321
+L G ++V+ K + T L + GY E LLE+ AN N+RN + + PL +A+K
Sbjct: 87 LLSKG-SNVNTKDFSGK-TPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKY 144
Query: 322 QSVECMEMLLRKGSQVNASDCDNRTPLHASLSKN 355
E ++ LL G+ ++A D T ++
Sbjct: 145 GRSEIVKKLLELGADISARDLTGLTAEASARIFG 178
Score = 57.8 bits (141), Expect = 1e-09
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 144 GADL-SNDKYG--ALHLAAFNGSIKGCSWLMLHGHDINFTKDSY--TPLHFAVLGNYVDC 198
GA++ + G L +A+ G + L+ G DI+ +D T A + +
Sbjct: 124 GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADIS-ARDLTGLTAEASARIFGRQEV 182
Query: 199 AKFLIKNKA 207
K + +
Sbjct: 183 IKIFTEVRR 191
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 132 bits (335), Expect = 4e-36
Identities = 37/160 (23%), Positives = 72/160 (45%), Gaps = 5/160 (3%)
Query: 242 KGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENH 301
+ L AA RG + ++ +L + D + + TAL + G LL+
Sbjct: 1 RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGK-TALQVMM-FGSTAIALELLKQG 58
Query: 302 ANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHP 361
A+ N ++ P+H AA+ ++ +++L+ G+ VN D P+H ++ + +V
Sbjct: 59 ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAV-- 116
Query: 362 LEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMH 401
+ L ++++ RD G +P+ +A VD L H
Sbjct: 117 VSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155
Score = 114 bits (287), Expect = 1e-29
Identities = 35/159 (22%), Positives = 65/159 (40%), Gaps = 15/159 (9%)
Query: 151 KYG-ALHLAAFNGSIKGCSWLML-HGHDINFTKDSY--TPLHFAVLGNYVDCAKFLIKNK 206
+ G L AA G ++ L+ + + + T L + G+ A L+K
Sbjct: 1 RAGDRLSGAAARGDVQEVRRLLHRELVHPD-ALNRFGKTALQVMMFGS-TAIALELLKQG 58
Query: 207 AHIHE------TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLK 260
A + + VH A T +D +++L+ + NV + G P+H+A G + +
Sbjct: 59 ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVS 118
Query: 261 AILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLE 299
L + +D+ + T L LA + G + + IL
Sbjct: 119 -FLAAE-SDLHRRDARGL-TPLELALQRGAQDLVDILQG 154
Score = 84.0 bits (209), Expect = 4e-19
Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Query: 314 PLHLAAKCQSVECMEMLL-RKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANV 372
L AA V+ + LL R+ +A + +T L + + LLK GA+
Sbjct: 5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIA---LELLKQGASP 61
Query: 373 NARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSI 418
N +D G SP+H AA + + L+ HGAD++ +G+ + +
Sbjct: 62 NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHL 107
Score = 67.8 bits (167), Expect = 2e-13
Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 11/98 (11%)
Query: 144 GADL-SNDKYG--ALHLAAFNGSIKGCSWLMLHGHDINF-TKDSYTPLHFAVLGNYVDCA 199
GA D G +H AA G + L+ HG D+N P+H AV +
Sbjct: 58 GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV 117
Query: 200 KFLIKNKAHIHE------TIVHSAVSTNAVDCVQLLLS 231
FL ++ +H T + A+ A D V +L
Sbjct: 118 SFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDILQG 154
Score = 58.2 bits (142), Expect = 4e-10
Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 346 TPLH-ASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGAD 404
L A+ ++ V +L + + +A + FG + + + L+ GA
Sbjct: 4 DRLSGAAARGDVQEVR--RLLHRELVHPDALNRFGKTALQVMMFGST-AIALELLKQGAS 60
Query: 405 ISSKTPSGSSALSI 418
+ + SG+S +
Sbjct: 61 PNVQDTSGTSPVHD 74
Score = 54.0 bits (131), Expect = 1e-08
Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 5/86 (5%)
Query: 123 TALLWCVFVKREDLLDALHQLGADL-SNDKYG--ALHLAAFNGSIKGCSWLMLHGHDINF 179
+ + D L L + GAD+ D G +HLA G S+L D++
Sbjct: 70 SPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL-AAESDLHR 128
Query: 180 -TKDSYTPLHFAVLGNYVDCAKFLIK 204
TPL A+ D L
Sbjct: 129 RDARGLTPLELALQRGAQDLVDILQG 154
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 131 bits (333), Expect = 7e-36
Identities = 38/150 (25%), Positives = 59/150 (39%), Gaps = 7/150 (4%)
Query: 268 ADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECM 327
A ++ L AA G VE +R LLE AN N N + P+ + S
Sbjct: 5 AGSSMEPSA---DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMG-SARVA 60
Query: 328 EMLLRKGSQVNASDCDNRT-PLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIA 386
E+LL G++ N +D T P+H + + L L +L + GA ++ RD +G P+ +A
Sbjct: 61 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDT--LVVLHRAGARLDVRDAWGRLPVDLA 118
Query: 387 ALSELSQCVDCLIMHGADISSKTPSGSSAL 416
L + A
Sbjct: 119 EELGHRDVARYLRAAAGGTRGSNHARIDAA 148
Score = 119 bits (301), Expect = 2e-31
Identities = 28/177 (15%), Positives = 53/177 (29%), Gaps = 35/177 (19%)
Query: 173 HGHDINFTKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSL 232
+ + S L A V+ + L++ A
Sbjct: 3 PAAGSS-MEPSADWLATAAARGRVEEVRALLEAGA------------------------- 36
Query: 233 QINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVE 292
NPN N+ G P+ + G + +L G A+ + +H AA G+++
Sbjct: 37 --NPNAPNSYGRRPIQVMM-MGSARVAELLLLHG-AEPNCADPATLTRPVHDAAREGFLD 92
Query: 293 CLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLH 349
L +L A + R+ ++P+ LA + + L
Sbjct: 93 TLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRG-----SNHAR 144
Score = 117 bits (297), Expect = 5e-31
Identities = 34/180 (18%), Positives = 58/180 (32%), Gaps = 38/180 (21%)
Query: 144 GADLS-NDKYGALHLAAFNGSIKGCSWLMLHGHDIN-FTKDSYTPLHFAVLGNYVDCAKF 201
A S L AA G ++ L+ G + N P+ ++G+ A+
Sbjct: 4 AAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGS-ARVAEL 62
Query: 202 LIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGV-SPLHIAADRGLISCLK 260
L+ + A PN + + P+H AA G + L
Sbjct: 63 LLLHGA---------------------------EPNCADPATLTRPVHDAAREGFLDTLV 95
Query: 261 AILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAK 320
+ +G A +D++ R + LA E G+ + R L N + A
Sbjct: 96 VLHRAG-ARLDVRDAWGR-LPVDLAEELGHRDVARYLRAAAGGTRGSN-----HARIDAA 148
Score = 92.9 bits (232), Expect = 3e-22
Identities = 30/122 (24%), Positives = 43/122 (35%), Gaps = 6/122 (4%)
Query: 298 LENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNIL 357
+E A + L AA VE + LL G+ NA + R P+
Sbjct: 1 MEPAAGSSMEP--SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM-MMGSA 57
Query: 358 SVHPLEILLKWGANVNARDIFGY-SPIHIAALSELSQCVDCLIMHGADISSKTPSGSSAL 416
V E+LL GA N D P+H AA + L GA + + G +
Sbjct: 58 RV--AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPV 115
Query: 417 SI 418
+
Sbjct: 116 DL 117
Score = 73.7 bits (182), Expect = 2e-15
Identities = 31/150 (20%), Positives = 52/150 (34%), Gaps = 17/150 (11%)
Query: 116 ASQAEKTTALLWCVFVKREDLLDALHQLGADL-SNDKYG--ALHLAAFNGSIKGCSWLML 172
+S L R + + AL + GA+ + + YG + + GS + L+L
Sbjct: 7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLL 65
Query: 173 HGHDINFT-KDSYT-PLHFAVLGNYVDCAKFLIKNKAHIHE------TIVHSAVSTNAVD 224
HG + N + T P+H A ++D L + A + V A D
Sbjct: 66 HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRD 125
Query: 225 CVQLLLSLQINPNVLNNKGVSPLHIAADRG 254
+ L + G + I A G
Sbjct: 126 VARYLRAAAGGTR-----GSNHARIDAAEG 150
Score = 43.2 bits (103), Expect = 5e-05
Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 366 LKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRN 422
++ A + + AA + V L+ GA+ ++ G + ++M
Sbjct: 1 MEPAAGSSMEP--SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMG 55
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 131 bits (332), Expect = 2e-35
Identities = 52/151 (34%), Positives = 83/151 (54%), Gaps = 2/151 (1%)
Query: 268 ADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECM 327
+ L AA G + +RIL+ N A+ N + PLHLAA +E +
Sbjct: 4 SHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIV 63
Query: 328 EMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAA 387
E+LL+ G+ VNA D TPL + L + +E+LLK GA+VNA D+ G++P+H+AA
Sbjct: 64 EVLLKNGADVNAVDHAGMTPLRLAALFGHLEI--VEVLLKNGADVNANDMEGHTPLHLAA 121
Query: 388 LSELSQCVDCLIMHGADISSKTPSGSSALSI 418
+ + V+ L+ +GAD++++ G +A I
Sbjct: 122 MFGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152
Score = 129 bits (326), Expect = 1e-34
Identities = 57/168 (33%), Positives = 91/168 (54%), Gaps = 7/168 (4%)
Query: 237 NVLNNKGV---SPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVEC 293
+ ++ G L AA G ++ ++ +G ADV+ + T LHLAA NG++E
Sbjct: 5 HHHHHHGSDLGKKLLEAARAGRDDEVRILMANG-ADVNAEDASGW-TPLHLAAFNGHLEI 62
Query: 294 LRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLS 353
+ +LL+N A+ N +H PL LAA +E +E+LL+ G+ VNA+D + TPLH +
Sbjct: 63 VEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAM 122
Query: 354 KNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMH 401
L + +E+LLK GA+VNA+D FG + I+ + + L
Sbjct: 123 FGHLEI--VEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 127 bits (322), Expect = 4e-34
Identities = 56/204 (27%), Positives = 87/204 (42%), Gaps = 37/204 (18%)
Query: 164 IKGCSWLMLHGHDINFTKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAV 223
++G HG D+ L A D + L+ N A
Sbjct: 1 MRGSHHHHHHGSDLG------KKLLEAARAGRDDEVRILMANGA---------------- 38
Query: 224 DCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALH 283
+ N + G +PLH+AA G + ++ +L +G ADV+ T L
Sbjct: 39 -----------DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG-ADVNAVDHAGM-TPLR 85
Query: 284 LAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCD 343
LAA G++E + +LL+N A+ N + + PLHLAA +E +E+LL+ G+ VNA D
Sbjct: 86 LAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKF 145
Query: 344 NRTPLHASLSKNILSVHPLEILLK 367
+T S+ + EIL K
Sbjct: 146 GKTAFDISIDNGNEDL--AEILQK 167
Score = 120 bits (305), Expect = 7e-32
Identities = 49/196 (25%), Positives = 88/196 (44%), Gaps = 36/196 (18%)
Query: 144 GADL----SNDKYGALHLAAFNGSIKGCSWLMLHGHDINFTKDSY--TPLHFAVLGNYVD 197
G+ +D L AA G LM +G D+N +D+ TPLH A +++
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVN-AEDASGWTPLHLAAFNGHLE 61
Query: 198 CAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLIS 257
+ L+KN A + N +++ G++PL +AA G +
Sbjct: 62 IVEVLLKNGA---------------------------DVNAVDHAGMTPLRLAALFGHLE 94
Query: 258 CLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHL 317
++ +L +G ADV+ E T LHLAA G++E + +LL+N A+ N ++ + +
Sbjct: 95 IVEVLLKNG-ADVNANDMEGH-TPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152
Query: 318 AAKCQSVECMEMLLRK 333
+ + + E+L +
Sbjct: 153 SIDNGNEDLAEILQKL 168
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 130 bits (329), Expect = 3e-35
Identities = 45/166 (27%), Positives = 77/166 (46%), Gaps = 6/166 (3%)
Query: 239 LNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILL 298
+ + L AA RG + L ++L + +V+ + R TAL + G E R LL
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQNN-VNVNAQNGFGR-TALQVMK-LGNPEIARRLL 57
Query: 299 ENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILS 358
AN + ++ +H AA+ ++ ++ LL + VN D + PLH + + L
Sbjct: 58 LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLR 117
Query: 359 VHPLEILLKWGA-NVNARDIFGYSPIHIAALSELSQCVDCLIMHGA 403
V +E L+K A NV R+ G + +A L ++ V + +GA
Sbjct: 118 V--VEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161
Score = 120 bits (304), Expect = 8e-32
Identities = 40/163 (24%), Positives = 77/163 (47%), Gaps = 12/163 (7%)
Query: 149 NDKYG-ALHLAAFNGSIKGCSWLMLHGHDINFTKDSY--TPLHFAVLGNYVDCAKFLIKN 205
+ +G L AA G ++ + L+ + ++N ++ + T L LGN + A+ L+
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQNNVNVN-AQNGFGRTALQVMKLGN-PEIARRLLLR 59
Query: 206 KAHIHE------TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCL 259
A+ ++H A +D +Q LL Q + N+ +N+G PLH+AA G + +
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 260 KAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHA 302
+ ++ ++V + + TA LA G E + ++ N A
Sbjct: 120 EFLVKHTASNVGHRNHKGD-TACDLARLYGRNEVVSLMQANGA 161
Score = 92.4 bits (231), Expect = 5e-22
Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 314 PLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVN 373
L AA +E + LL+ VNA + RT L N LL GAN +
Sbjct: 8 ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIA---RRLLLRGANPD 64
Query: 374 ARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSAL 416
+D G++ IH AA + + L+ AD++ + G+ L
Sbjct: 65 LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPL 107
Score = 65.9 bits (162), Expect = 9e-13
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 343 DNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHG 402
L ++ ++ L L LL+ NVNA++ FG + + + L + L++ G
Sbjct: 4 PWGNELASAAARGDLEQ--LTSLLQNNVNVNAQNGFGRTALQVMKLGNP-EIARRLLLRG 60
Query: 403 ADISSKTPSGSSAL 416
A+ K +G + +
Sbjct: 61 ANPDLKDRTGFAVI 74
Score = 32.7 bits (76), Expect = 0.24
Identities = 6/40 (15%), Positives = 19/40 (47%)
Query: 379 GYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSI 418
+ + AA + + L+ + +++++ G +AL +
Sbjct: 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV 44
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 128 bits (325), Expect = 5e-35
Identities = 37/138 (26%), Positives = 70/138 (50%), Gaps = 2/138 (1%)
Query: 270 VDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEM 329
+D T R T LH+A+ G + + LL+N ++ N ++H PLH A ++ +E+
Sbjct: 2 IDPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVEL 61
Query: 330 LLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALS 389
LL+ + VN + N +PLH + + + +++LL +GA+ NA +IFG P+
Sbjct: 62 LLQHKALVNTTGYQNDSPLHDAAKNGHVDI--VKLLLSYGASRNAVNIFGLRPVDYTDDE 119
Query: 390 ELSQCVDCLIMHGADISS 407
+ + + + +S
Sbjct: 120 SMKSLLLLPEKNESSSAS 137
Score = 112 bits (284), Expect = 2e-29
Identities = 37/167 (22%), Positives = 66/167 (39%), Gaps = 30/167 (17%)
Query: 174 GHDINFTKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQ 233
G D T LH A + + ++L++N +
Sbjct: 1 GIDPFTNHRGETLLHIASIKGDIPSVEYLLQNGS-------------------------- 34
Query: 234 INPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVEC 293
+PNV ++ G +PLH A + G + ++ +L A V+ + + LH AA+NG+V+
Sbjct: 35 -DPNVKDHAGWTPLHEACNHGHLKVVELLLQHK-ALVNTTGYQND-SPLHDAAKNGHVDI 91
Query: 294 LRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNAS 340
+++LL A+ N N P+ + L K +AS
Sbjct: 92 VKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLL-LPEKNESSSAS 137
Score = 108 bits (272), Expect = 8e-28
Identities = 34/163 (20%), Positives = 58/163 (35%), Gaps = 32/163 (19%)
Query: 144 GADLSNDKYG--ALHLAAFNGSIKGCSWLMLHGHDINF-TKDSYTPLHFAVLGNYVDCAK 200
G D + G LH+A+ G I +L+ +G D N +TPLH A ++ +
Sbjct: 1 GIDPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVE 60
Query: 201 FLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLK 260
L+++KA N + SPLH AA G + +K
Sbjct: 61 LLLQHKA---------------------------LVNTTGYQNDSPLHDAAKNGHVDIVK 93
Query: 261 AILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHAN 303
+L G A + + + L + +N ++
Sbjct: 94 LLLSYG-ASRNAVNIFGL-RPVDYTDDESMKSLLLLPEKNESS 134
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 127 bits (322), Expect = 1e-34
Identities = 35/138 (25%), Positives = 57/138 (41%), Gaps = 5/138 (3%)
Query: 268 ADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECM 327
+ + L AA G VE +R LLE A+ N N + P+ + S +
Sbjct: 3 PGIHMLGGSSD-AGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVA 60
Query: 328 EMLLRKGSQVNASDCDNRT-PLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIA 386
E+LL G++ N +D T P+H + + L L +L + GA ++ D +G P+ +A
Sbjct: 61 ELLLLHGAEPNCADPATLTRPVHDAAREGFLDT--LVVLHRAGARLDVCDAWGRLPVDLA 118
Query: 387 ALSELSQCVDCLIMHGAD 404
L D
Sbjct: 119 EEQGHRDIARYLHAATGD 136
Score = 117 bits (296), Expect = 5e-31
Identities = 28/162 (17%), Positives = 52/162 (32%), Gaps = 30/162 (18%)
Query: 174 GHDINFT-KDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSL 232
I+ S L A V+ + L++ A
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGA------------------------- 36
Query: 233 QINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVE 292
+PN LN G P+ + G + +L G A+ + +H AA G+++
Sbjct: 37 --DPNALNRFGRRPIQVMM-MGSAQVAELLLLHG-AEPNCADPATLTRPVHDAAREGFLD 92
Query: 293 CLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKG 334
L +L A + + ++P+ LA + + L
Sbjct: 93 TLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT 134
Score = 107 bits (269), Expect = 2e-27
Identities = 31/164 (18%), Positives = 53/164 (32%), Gaps = 33/164 (20%)
Query: 144 GADL-SNDKYG--ALHLAAFNGSIKGCSWLMLHGHDIN-FTKDSYTPLHFAVLGNYVDCA 199
+ L AA G ++ L+ G D N + P+ ++G+ A
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGS-AQVA 60
Query: 200 KFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCL 259
+ L+ + A N D P+H AA G + L
Sbjct: 61 ELLLLHGAEP-----------NCAD---------------PATLTRPVHDAAREGFLDTL 94
Query: 260 KAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHAN 303
+ +G A +D+ R + LA E G+ + R L +
Sbjct: 95 VVLHRAG-ARLDVCDAWGR-LPVDLAEEQGHRDIARYLHAATGD 136
Score = 97.5 bits (244), Expect = 5e-24
Identities = 28/118 (23%), Positives = 39/118 (33%), Gaps = 4/118 (3%)
Query: 302 ANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHP 361
+ L AA VE + LL G+ NA + R P+ V
Sbjct: 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVM-MMGSAQV-- 59
Query: 362 LEILLKWGANVNARDIFGY-SPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSI 418
E+LL GA N D P+H AA + L GA + G + +
Sbjct: 60 AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDL 117
Score = 69.8 bits (172), Expect = 2e-14
Identities = 17/80 (21%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 334 GSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQ 393
++ + L + ++ + + LL+ GA+ NA + FG PI + + Q
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVET--VRQLLEAGADPNALNRFGRRPIQVMMMGSA-Q 58
Query: 394 CVDCLIMHGADISSKTPSGS 413
+ L++HGA+ + P+
Sbjct: 59 VAELLLLHGAEPNCADPATL 78
Score = 50.9 bits (123), Expect = 1e-07
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 369 GANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRN 422
++ + + AA + V L+ GAD ++ G + ++M
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMG 55
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 126 bits (318), Expect = 2e-33
Identities = 18/177 (10%), Positives = 53/177 (29%), Gaps = 14/177 (7%)
Query: 245 SPLHIAADRGLISCLKAILDSGMADVDIKTKERRV--TALHLAAENGYVECLRILLENHA 302
+ AA G + + G + + + L + + L+ A
Sbjct: 8 RTVSAAAMLGTYEDFLELFEKG-YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGA 66
Query: 303 NCNERNHKEQIPLHLAAKC------QSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNI 356
+ R + + + E ++ L KG+ + A + + ++
Sbjct: 67 DIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYF 126
Query: 357 LSVHPLE-----ILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSK 408
+ + + I + G + +D +G + + + + + + + K
Sbjct: 127 VDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLK 183
Score = 117 bits (294), Expect = 3e-30
Identities = 24/205 (11%), Positives = 55/205 (26%), Gaps = 38/205 (18%)
Query: 150 DKYGALHLAAFNGSIKGCSWLMLHGHDINFTKDSYTPLHFAVLGNYVDCAKFLIKNKAHI 209
+Y + AA G+ + L G++ + L+ +
Sbjct: 5 SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVL------------------ 46
Query: 210 HETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRG------LISCLKAIL 263
+ L++ + +G + G K L
Sbjct: 47 -----RNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFL 101
Query: 264 DSGMADVDIKTKERRVTALHLAAENGYVECLR-------ILLENHANCNERNHKEQIPLH 316
+ G AD+ K + + N +V+ I ++ ++ L
Sbjct: 102 EKG-ADITALYKPYK-IVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALE 159
Query: 317 LAAKCQSVECMEMLLRKGSQVNASD 341
+CQ ++M+ + N +
Sbjct: 160 FVKRCQKPIALKMMEDYIKKYNLKE 184
Score = 110 bits (278), Expect = 4e-28
Identities = 30/181 (16%), Positives = 51/181 (28%), Gaps = 20/181 (11%)
Query: 212 TIVHSAVSTNAVDCVQLLLSLQINPNVLNNK---GVSPLHIAADRGLISCLKAILDSGMA 268
V +A + L K L D +++ G A
Sbjct: 8 RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKG-A 66
Query: 269 DVDIKTKERRVTALHLAAENGY------VECLRILLENHANCNERNHKEQIPLHLAAKCQ 322
D+ +TKE T + G E +I LE A+ +I +
Sbjct: 67 DIKSRTKEGT-TLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNY 125
Query: 323 SVECMEM-------LLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNAR 375
V+ EM + G Q+ D T L L+++ + N +
Sbjct: 126 FVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIA--LKMMEDYIKKYNLK 183
Query: 376 D 376
+
Sbjct: 184 E 184
Score = 107 bits (270), Expect = 5e-27
Identities = 24/153 (15%), Positives = 42/153 (27%), Gaps = 14/153 (9%)
Query: 280 TALHLAAENGYVECLRILLENHANCNERNHKE---QIPLHLAAKCQSVECMEMLLRKGSQ 336
+ AA G E L E E K L + L+ KG+
Sbjct: 8 RTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67
Query: 337 VNASDCDNRTPLHASLSKN----ILSVHPLEILLKWGANVNARDIFGYSPIHIAALS--- 389
+ + + T + +I L+ GA++ A + +
Sbjct: 68 IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFV 127
Query: 390 ---ELSQCVDCLIMH-GADISSKTPSGSSALSI 418
E+ + G + K G +AL
Sbjct: 128 DENEMIPLYKLIFSQSGLQLLIKDKWGLTALEF 160
Score = 104 bits (261), Expect = 8e-26
Identities = 26/202 (12%), Positives = 47/202 (23%), Gaps = 35/202 (17%)
Query: 120 EKTTALLWCVFVKREDLLDALHQLGADLSNDKYG------ALHLAAFNGSIKGCSWLMLH 173
+ + + + L + G + L K +L+
Sbjct: 5 SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64
Query: 174 GHDINF-TKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSL 232
G DI TK+ T G D + ++ L
Sbjct: 65 GADIKSRTKEGTTLFFPLFQGGGNDITG---------------------TTELCKIFLEK 103
Query: 233 QINPNVLNNKGVSPLHIAADRG------LISCLKAILDSGMADVDIKTKERRVTALHLAA 286
+ L + +I K I + IK K TAL
Sbjct: 104 GADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGL-TALEFVK 162
Query: 287 ENGYVECLRILLENHANCNERN 308
L+++ + N +
Sbjct: 163 RCQKPIALKMMEDYIKKYNLKE 184
Score = 77.0 bits (190), Expect = 2e-16
Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 9/117 (7%)
Query: 314 PLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPL--EILLKWGAN 371
+ AA + E L KG + S L+ L N L+ GA+
Sbjct: 9 TVSAAAMLGTYEDFLELFEKGYEDKESV-LKSNILYDVLRNNNDEARYKISMFLINKGAD 67
Query: 372 VNARDIFGYSPIHIAA------LSELSQCVDCLIMHGADISSKTPSGSSALSIIMRN 422
+ +R G + ++ ++ + GADI++ + + N
Sbjct: 68 IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFN 124
Score = 60.1 bits (146), Expect = 2e-10
Identities = 20/142 (14%), Positives = 38/142 (26%), Gaps = 23/142 (16%)
Query: 123 TALLWCVFVKREDLLDALHQLGADL-SNDKYG--ALHLAAFNG------SIKGCSWLMLH 173
L R + L GAD+ S K G G + + C +
Sbjct: 44 DVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK 103
Query: 174 GHDINFT-KDSYTPLHFAVLGNYVDCAK-------FLIKNKAHIH------ETIVHSAVS 219
G DI K + + +VD + ++ + T +
Sbjct: 104 GADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKR 163
Query: 220 TNAVDCVQLLLSLQINPNVLNN 241
++++ N+ N
Sbjct: 164 CQKPIALKMMEDYIKKYNLKEN 185
Score = 50.4 bits (121), Expect = 4e-07
Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 7/88 (7%)
Query: 339 ASDCDNRTPLH-ASLSKNILSVHPLEILLKWGANV---NARDIFGYSPIHIAALSELSQC 394
++ + A++ L + G + Y + +
Sbjct: 1 SNAMSEYRTVSAAAMLGTYEDF---LELFEKGYEDKESVLKSNILYDVLRNNNDEARYKI 57
Query: 395 VDCLIMHGADISSKTPSGSSALSIIMRN 422
LI GADI S+T G++ + +
Sbjct: 58 SMFLINKGADIKSRTKEGTTLFFPLFQG 85
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 124 bits (315), Expect = 2e-33
Identities = 47/139 (33%), Positives = 74/139 (53%), Gaps = 3/139 (2%)
Query: 280 TALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNA 339
L AA G + +RIL+ N A + PLHLAA+ E+LLR G +A
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62
Query: 340 SDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLI 399
+RTPLH + S+ ++ +E+LLK GA+VNA+D+ + +H A + V+ LI
Sbjct: 63 RTKVDRTPLHMAASEGHANI--VEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120
Query: 400 MHGADISSKTPSGSSALSI 418
+GAD+ +++ +A I
Sbjct: 121 KYGADVHTQSKFCKTAFDI 139
Score = 124 bits (314), Expect = 3e-33
Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 5/142 (3%)
Query: 246 PLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCN 305
L AA G ++ ++ +G T + LHLAA+ G+ +LL + +
Sbjct: 5 KLLEAARAGQDDEVRILMANG---APFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD 61
Query: 306 ERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEIL 365
R ++ PLH+AA +E+LL+ G+ VNA D T LH + N V +E+L
Sbjct: 62 ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEV--VELL 119
Query: 366 LKWGANVNARDIFGYSPIHIAA 387
+K+GA+V+ + F + I+
Sbjct: 120 IKYGADVHTQSKFCKTAFDISI 141
Score = 124 bits (314), Expect = 3e-33
Identities = 35/177 (19%), Positives = 67/177 (37%), Gaps = 29/177 (16%)
Query: 154 ALHLAAFNGSIKGCSWLMLHGHDINFTKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETI 213
L AA G LM +G +PLH A + + L++
Sbjct: 5 KLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGV------ 58
Query: 214 VHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIK 273
+ + +PLH+AA G + ++ +L G ADV+ K
Sbjct: 59 ---------------------SRDARTKVDRTPLHMAASEGHANIVEVLLKHG-ADVNAK 96
Query: 274 TKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEML 330
+ TALH A E+ + E + +L++ A+ + ++ + ++ + + E+L
Sbjct: 97 DMLKM-TALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 122 bits (309), Expect = 1e-32
Identities = 42/174 (24%), Positives = 69/174 (39%), Gaps = 30/174 (17%)
Query: 182 DSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNN 241
D L A D + L+ N A +
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGAPF-----------TT-----------------DW 32
Query: 242 KGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENH 301
G SPLH+AA G S + +L +G D +TK R T LH+AA G+ + +LL++
Sbjct: 33 LGTSPLHLAAQYGHFSTTEVLLRAG-VSRDARTKVDR-TPLHMAASEGHANIVEVLLKHG 90
Query: 302 ANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKN 355
A+ N ++ + LH A + E +E+L++ G+ V+ +T S+
Sbjct: 91 ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNG 144
Score = 105 bits (266), Expect = 9e-27
Identities = 41/178 (23%), Positives = 68/178 (38%), Gaps = 32/178 (17%)
Query: 123 TALLWCVFVKREDLLDALHQLGADLSNDKYG--ALHLAAFNGSIKGCSWLMLHGHDINF- 179
LL ++D + L GA + D G LHLAA G L+ G +
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63
Query: 180 TKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVL 239
TK TPLH A + + + L+K+ A + N
Sbjct: 64 TKVDRTPLHMAASEGHANIVEVLLKHGA---------------------------DVNAK 96
Query: 240 NNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRIL 297
+ ++ LH A + ++ ++ G ADV ++K + TA ++ +NG + IL
Sbjct: 97 DMLKMTALHWATEHNHQEVVELLIKYG-ADVHTQSKFCK-TAFDISIDNGNEDLAEIL 152
Score = 61.6 bits (151), Expect = 2e-11
Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
Query: 343 DNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHG 402
D L + + IL+ GA D G SP+H+AA + L+ G
Sbjct: 1 DLGKKLLEAARAGQDDE--VRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAG 57
Query: 403 ADISSKTPSGSSAL 416
++T + L
Sbjct: 58 VSRDARTKVDRTPL 71
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 116 bits (294), Expect = 8e-31
Identities = 52/124 (41%), Positives = 81/124 (65%), Gaps = 2/124 (1%)
Query: 280 TALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNA 339
T LHLAA NG++E +++LLE A+ N ++ + PLHLAA+ +E +++LL G+ VNA
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 340 SDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLI 399
D + RTPLH + L V +++LL+ GA+VNA+D G +P+H+AA + + V L+
Sbjct: 64 KDKNGRTPLHLAARNGHLEV--VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 400 MHGA 403
GA
Sbjct: 122 EAGA 125
Score = 102 bits (256), Expect = 1e-25
Identities = 49/153 (32%), Positives = 79/153 (51%), Gaps = 29/153 (18%)
Query: 182 DSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNN 241
+ TPLH A +++ K L++ A + N +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGA---------------------------DVNAKDK 33
Query: 242 KGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENH 301
G +PLH+AA G + +K +L++G ADV+ K K R T LHLAA NG++E +++LLE
Sbjct: 34 NGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAG 91
Query: 302 ANCNERNHKEQIPLHLAAKCQSVECMEMLLRKG 334
A+ N ++ + PLHLAA+ +E +++LL G
Sbjct: 92 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124
Score = 93.6 bits (234), Expect = 9e-23
Identities = 42/105 (40%), Positives = 68/105 (64%), Gaps = 2/105 (1%)
Query: 314 PLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVN 373
PLHLAA+ +E +++LL G+ VNA D + RTPLH + L V +++LL+ GA+VN
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV--VKLLLEAGADVN 62
Query: 374 ARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSI 418
A+D G +P+H+AA + + V L+ GAD+++K +G + L +
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL 107
Score = 86.2 bits (215), Expect = 3e-20
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 14/118 (11%)
Query: 154 ALHLAAFNGSIKGCSWLMLHGHDINF-TKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHE- 211
LHLAA NG ++ L+ G D+N K+ TPLH A +++ K L++ A ++
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 212 -----TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRG-------LIS 257
T +H A ++ V+LLL + N + G +PLH+AA G L+
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Score = 62.0 bits (152), Expect = 1e-11
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 144 GADL-SNDKYG--ALHLAAFNGSIKGCSWLMLHGHDINF-TKDSYTPLHFAVLGNYVDCA 199
GAD+ + DK G LHLAA NG ++ L+ G D+N K+ TPLH A +++
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV 117
Query: 200 KFLIKNKAH 208
K L++ A+
Sbjct: 118 KLLLEAGAY 126
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 122 bits (307), Expect = 1e-30
Identities = 48/327 (14%), Positives = 109/327 (33%), Gaps = 65/327 (19%)
Query: 87 KMSSGDVNVLYAIENSLYEPDEMATLFSKASQAEKTTALLWCVFVKREDLLDALHQLGAD 146
S + ++ A+ + + +E + + L +F + +++ +L+ ++
Sbjct: 37 DFLSSPLKIMKALPSPVVNDNE--------QKMKLEAFLQRLLFPEIQEMPTSLNNDSSN 88
Query: 147 LSNDKY----GALHLAAFNGSIKGCSWLMLHGHDINFTKDSY--TPLHFAVLGNYVDCAK 200
+++ H++ + + ++N D + TPLH+ ++ K
Sbjct: 89 RNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVK 148
Query: 201 FLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRG---LIS 257
L+K+ + N +N G S L A
Sbjct: 149 HLVKHGS---------------------------NRLYGDNMGESCLVKAVKSVNNYDSG 181
Query: 258 CLKAILDSGMADVDIKTKERRVTALHLAAE-----------NGYVEC-LRILLENHANCN 305
+A+LD + ++ R T LH Y++ + +++
Sbjct: 182 TFEALLDYLYPCLILEDSMNR-TILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPI 240
Query: 306 ERNHKEQIPLHLAAKCQSVECMEMLL----RKGSQVNASDCDNRTPLH-ASLSKNILSVH 360
+ E+ + + + L + +NA D + T L+ A+ NI V
Sbjct: 241 QSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIV- 299
Query: 361 PLEILLKWGANVNARDIFGYSPIHIAA 387
+ LL +GA+ + G P+ A
Sbjct: 300 --DALLDYGADPFIANKSGLRPVDFGA 324
Score = 111 bits (279), Expect = 7e-27
Identities = 35/231 (15%), Positives = 71/231 (30%), Gaps = 18/231 (7%)
Query: 210 HETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMAD 269
E + + + L + N N + L+ + + +
Sbjct: 63 LEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLN 122
Query: 270 VDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAK---CQSVEC 326
++I E T LH +E ++ L+++ +N ++ + L A K
Sbjct: 123 LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGT 182
Query: 327 MEMLLRK-GSQVNASDCDNRTPLH------ASLSKNILSVHPLEILLKW----GANVNAR 375
E LL + D NRT LH + + + L+IL+ W
Sbjct: 183 FEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQS 242
Query: 376 DIFGYSPIHIAALSELSQC----VDCLIMHGADISSKTPSGSSALSIIMRN 422
E +D + ++++ +G + L+I R
Sbjct: 243 GTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARL 293
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 117 bits (295), Expect = 2e-29
Identities = 45/299 (15%), Positives = 85/299 (28%), Gaps = 69/299 (23%)
Query: 143 LGADLSN-DKYG--ALHLAAFNGSIKGCS-------WLMLHGHDINFTKDSY--TPLHFA 190
+ A Y ++ A + + D F T L A
Sbjct: 2 VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKA 61
Query: 191 VL---GNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPL 247
+L D L+ D ++ ++ + KG + L
Sbjct: 62 MLNLHNGQNDTIALLLDVARKT--------------DSLKQFVN--ASYTDSYYKGQTAL 105
Query: 248 HIAADRGLISCLKAILDSGMADVDIKTKERRV-------------TALHLAAENGYVECL 294
HIA +R ++ + ++++G ADV L LAA + +
Sbjct: 106 HIAIERRNMTLVTLLVENG-ADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIV 164
Query: 295 RILLEN---HANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHAS 351
+ LL+N A+ + R+ LH + A + + T S
Sbjct: 165 KFLLQNSWQPADISARDSVGNTVLHALVE-----------------VADNTVDNTKFVTS 207
Query: 352 LSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTP 410
+ IL + L + G +P+ +AA S + ++
Sbjct: 208 MYNEILILGAK--LHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH--EPEC 262
Score = 111 bits (278), Expect = 3e-27
Identities = 36/222 (16%), Positives = 76/222 (34%), Gaps = 44/222 (19%)
Query: 231 SLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGM------ADVDIKTKERRVTALHL 284
S+ + A + L+++L D + K E T L
Sbjct: 1 SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLK 60
Query: 285 AAEN---GYVECLRILLEN-----------HANCNERNHKEQIPLHLAAKCQSVECMEML 330
A N G + + +LL+ +A+ + +K Q LH+A + +++ + +L
Sbjct: 61 AMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLL 120
Query: 331 LRKGSQVNASDCDNRTPLHASLSKNILSVHPL------------EILLKWG---ANVNAR 375
+ G+ V A+ + PL + LL+ A+++AR
Sbjct: 121 VENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISAR 180
Query: 376 DIFGYSPIHIAALSE---------LSQCVDCLIMHGADISSK 408
D G + +H ++ + +++ GA +
Sbjct: 181 DSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPT 222
Score = 110 bits (276), Expect = 6e-27
Identities = 46/262 (17%), Positives = 78/262 (29%), Gaps = 72/262 (27%)
Query: 123 TALLWCVFVKR----EDLLDALHQLGA-----DLSNDKYG--ALHLAAFN---GSIKGCS 168
++ V E LL L + + + + G L A N G +
Sbjct: 15 RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIA 74
Query: 169 WLMLHGHDINFTKDS------------YTPLHFAVLGNYVDCAKFLIKNKAHIH------ 210
L+ + K T LH A+ + L++N A +
Sbjct: 75 LLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGD 134
Query: 211 --------------ETIVHSAVSTNAVDCVQLLLS---LQINPNVLNNKGVSPLHIAADR 253
E + A TN + V+ LL + + ++ G + LH +
Sbjct: 135 FFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEV 194
Query: 254 G---------------LISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILL 298
I L A L + +I ++ T L LAA +G + L +L
Sbjct: 195 ADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGL-TPLALAASSGKIGVLAYIL 253
Query: 299 ENHANCNERNHKEQIPLHLAAK 320
+ + E H AA
Sbjct: 254 QREIHEPE-------CRHAAAH 268
Score = 83.3 bits (206), Expect = 9e-18
Identities = 42/225 (18%), Positives = 65/225 (28%), Gaps = 66/225 (29%)
Query: 123 TALLWCVFVKREDLLDA---LHQLGADL------------SNDKYG--ALHLAAFNGSIK 165
T LL + D L + + G ALH+A ++
Sbjct: 56 TCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMT 115
Query: 166 GCSWLMLHGHDIN---------------FTKDSYTPLHFAVLGNYVDCAKFLIKN---KA 207
+ L+ +G D+ PL A N + KFL++N A
Sbjct: 116 LVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPA 175
Query: 208 HIHE------TIVHSAVS----------------TNAVDCVQLLLSLQINPNVLNNKGVS 245
I T++H+ V + L + N KG++
Sbjct: 176 DISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLT 235
Query: 246 PLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGY 290
PL +AA G I L IL H AA + +
Sbjct: 236 PLALAASSGKIGVLAYILQRE-IHEP--------ECRHAAAHHHH 271
Score = 65.6 bits (160), Expect = 9e-12
Identities = 21/131 (16%), Positives = 42/131 (32%), Gaps = 20/131 (15%)
Query: 302 ANCNERNHKEQIPLHLAAKCQSVECMEMLLR-------KGSQVNASDCDN-RTPLH-ASL 352
A ++ + A + + +E LL + + D + +T L A L
Sbjct: 4 AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAML 63
Query: 353 SKNILSVHPLEILLKWGA-----------NVNARDIFGYSPIHIAALSELSQCVDCLIMH 401
+ + + +LL + G + +HIA V L+ +
Sbjct: 64 NLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVEN 123
Query: 402 GADISSKTPSG 412
GAD+ +
Sbjct: 124 GADVQAAANGD 134
Score = 39.4 bits (92), Expect = 0.004
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 16/73 (21%)
Query: 135 DLLDALHQLGADLSN--------DKYG--ALHLAAFNGSIKGCSWLMLHGHDINFTKDSY 184
+ + + LGA L ++ G L LAA +G I ++++
Sbjct: 207 SMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQRE------IHEP 260
Query: 185 TPLHFAVLGNYVD 197
H A ++
Sbjct: 261 ECRHAAAHHHHHH 273
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 111 bits (280), Expect = 4e-29
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Query: 280 TALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNA 339
A +NG ++ ++ + + N + PLH AA C +E +E LL KG+ +NA
Sbjct: 9 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 68
Query: 340 SDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAA 387
D + TPL +++ + +S +++LL GA+ + G +
Sbjct: 69 PDKHHITPLLSAVYEGHVSC--VKLLLSKGADKTVKGPDGLTAFEATD 114
Score = 104 bits (262), Expect = 1e-26
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 239 LNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILL 298
L + A G + +K + G DV+ + R LH AA+ G +E L LL
Sbjct: 3 LGSMCDKEFMWALKNGDLDEVKDYVAKG-EDVNRTLEGGR-KPLHYAADCGQLEILEFLL 60
Query: 299 ENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILS 358
A+ N + PL A V C+++LL KG+ D T A+ ++ I +
Sbjct: 61 LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKA 120
Query: 359 V 359
+
Sbjct: 121 L 121
Score = 95.5 bits (239), Expect = 2e-23
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
Query: 314 PLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVN 373
A K ++ ++ + KG VN + R PLH + L + LE LL GA++N
Sbjct: 10 EFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEI--LEFLLLKGADIN 67
Query: 374 ARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSI 418
A D +P+ A CV L+ GAD + K P G +A
Sbjct: 68 APDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEA 112
Score = 94.8 bits (237), Expect = 3e-23
Identities = 27/140 (19%), Positives = 43/140 (30%), Gaps = 29/140 (20%)
Query: 181 KDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLN 240
+A+ +D K + + N
Sbjct: 5 SMCDKEFMWALKNGDLDEVKDYVAKGE---------------------------DVNRTL 37
Query: 241 NKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLEN 300
G PLH AAD G + L+ +L G AD++ K T L A G+V C+++LL
Sbjct: 38 EGGRKPLHYAADCGQLEILEFLLLKG-ADINAPDKHHI-TPLLSAVYEGHVSCVKLLLSK 95
Query: 301 HANCNERNHKEQIPLHLAAK 320
A+ +
Sbjct: 96 GADKTVKGPDGLTAFEATDN 115
Score = 82.8 bits (206), Expect = 5e-19
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 7/115 (6%)
Query: 147 LSNDKYGALHLAAFNGSIKGCSWLMLHGHDINFT-KDSYTPLHFAVLGNYVDCAKFLIKN 205
L + A NG + + G D+N T + PLH+A ++ +FL+
Sbjct: 3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 62
Query: 206 KAHIHE------TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRG 254
A I+ T + SAV V CV+LLLS + V G++ ++
Sbjct: 63 GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQA 117
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 110 bits (279), Expect = 9e-29
Identities = 42/122 (34%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
Query: 280 TALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNA 339
L AA G + +RIL+ N A+ N ++ PL+LA +E +E+LL+ G+ VNA
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA 75
Query: 340 SDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLI 399
D TPLH + L + E+LLK GA+VNA+D FG + I+ + + L
Sbjct: 76 VDAIGFTPLHLAAFIGHLEI--AEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133
Query: 400 MH 401
Sbjct: 134 KL 135
Score = 99.0 bits (248), Expect = 1e-24
Identities = 35/144 (24%), Positives = 65/144 (45%), Gaps = 14/144 (9%)
Query: 164 IKGCSWLMLHGHDINFTKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHE------TIVHSA 217
++G HG D+ L A D + L+ N A ++ T ++ A
Sbjct: 1 MRGSHHHHHHGSDLG------KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLA 54
Query: 218 VSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKER 277
+ ++ V++LL + N ++ G +PLH+AA G + + +L G ADV+ + K
Sbjct: 55 TAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG-ADVNAQDKFG 113
Query: 278 RVTALHLAAENGYVECLRILLENH 301
+ TA ++ NG + IL + +
Sbjct: 114 K-TAFDISIGNGNEDLAEILQKLN 136
Score = 95.5 bits (239), Expect = 2e-23
Identities = 36/123 (29%), Positives = 65/123 (52%), Gaps = 9/123 (7%)
Query: 296 ILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKN 355
+ ++ + L AA+ + + +L+ G+ VNA D TPL+ + +
Sbjct: 6 HHHHHGSDLGK-------KLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHG 58
Query: 356 ILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSA 415
L + +E+LLK GA+VNA D G++P+H+AA + + L+ HGAD++++ G +A
Sbjct: 59 HLEI--VEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTA 116
Query: 416 LSI 418
I
Sbjct: 117 FDI 119
Score = 89.0 bits (222), Expect = 5e-21
Identities = 32/134 (23%), Positives = 55/134 (41%), Gaps = 22/134 (16%)
Query: 144 GADLSNDKYGA-----LHLAAFNGSIKGCSWLMLHGHDINFTKDSY--TPLHFAVLGNYV 196
G+ + +G+ L AA G LM +G D+N KD Y TPL+ A ++
Sbjct: 3 GSHH-HHHHGSDLGKKLLEAARAGQDDEVRILMANGADVN-AKDEYGLTPLYLATAHGHL 60
Query: 197 DCAKFLIKNKAHIHE------TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIA 250
+ + L+KN A ++ T +H A ++ ++LL + N + G + I+
Sbjct: 61 EIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDIS 120
Query: 251 ADRG-------LIS 257
G L
Sbjct: 121 IGNGNEDLAEILQK 134
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 106 bits (268), Expect = 2e-27
Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 3/114 (2%)
Query: 271 DIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEML 330
+K+ T LH AA+NG+ E ++ LL A+ N R+ PLHLAAK E +++L
Sbjct: 3 MWGSKDGN-TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLL 61
Query: 331 LRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIH 384
L KG+ VNA D TP H + + +++L GA+VNAR H
Sbjct: 62 LAKGADVNARSKDGNTPEHLAKKNGHHEI--VKLLDAKGADVNARSWGSSHHHH 113
Score = 100 bits (253), Expect = 1e-25
Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 30/143 (20%)
Query: 174 GHDINFTKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQ 233
GH +KD TPLH A + + K L+ A
Sbjct: 1 GHMWG-SKDGNTPLHNAAKNGHAEEVKKLLSKGA-------------------------- 33
Query: 234 INPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVEC 293
+ N + G +PLH+AA G +K +L G ADV+ ++K+ T HLA +NG+ E
Sbjct: 34 -DVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG-ADVNARSKDGN-TPEHLAKKNGHHEI 90
Query: 294 LRILLENHANCNERNHKEQIPLH 316
+++L A+ N R+ H
Sbjct: 91 VKLLDAKGADVNARSWGSSHHHH 113
Score = 95.5 bits (239), Expect = 1e-23
Identities = 37/103 (35%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
Query: 314 PLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVN 373
PLH AAK E ++ LL KG+ VNA D TPLH + + +++LL GA+VN
Sbjct: 12 PLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEI--VKLLLAKGADVN 69
Query: 374 ARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSAL 416
AR G +P H+A + + V L GAD+++++ S
Sbjct: 70 ARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112
Score = 87.8 bits (219), Expect = 6e-21
Identities = 31/114 (27%), Positives = 45/114 (39%), Gaps = 10/114 (8%)
Query: 144 GADLSNDKYG--ALHLAAFNGSIKGCSWLMLHGHDINF-TKDSYTPLHFAVLGNYVDCAK 200
G K G LH AA NG + L+ G D+N +KD TPLH A + + K
Sbjct: 1 GHMW-GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVK 59
Query: 201 FLIKNKAHIHE------TIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLH 248
L+ A ++ T H A + V+LL + + N + H
Sbjct: 60 LLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 111 bits (279), Expect = 2e-27
Identities = 40/246 (16%), Positives = 73/246 (29%), Gaps = 51/246 (20%)
Query: 211 ETIVHSAVSTNAV----DCVQLLLSLQINPNVLNNK----GVSPLHIAADRG-------- 254
I+ VS + + LL+ + + G + L A
Sbjct: 6 RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTI 65
Query: 255 --LISCLKAILDSG-MADVDIKTKERR-VTALHLAAENGYVECLRILLENHANCNERNHK 310
L+ + + + + R TALH+A E + +L+E A+ + +
Sbjct: 66 PILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARG 125
Query: 311 E--------------QIPLHLAAKCQSVECMEMLLRKGSQ---VNASDCDNRTPLHA--- 350
++PL LAA + L G + + D T LHA
Sbjct: 126 RFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVA 185
Query: 351 ----SLSKNILSVHPLEILLKWGANVNA-------RDIFGYSPIHIAALSELSQCVDCLI 399
+ ++LL A + + G SP+ +AA + +I
Sbjct: 186 IADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHII 245
Query: 400 MHGADI 405
Sbjct: 246 RREIAD 251
Score = 102 bits (257), Expect = 1e-24
Identities = 42/257 (16%), Positives = 71/257 (27%), Gaps = 60/257 (23%)
Query: 134 EDLLDALHQLGADLSNDK------YG--ALHLAAFN---GSIKGCSWLMLHGHDINFTKD 182
E LL L L D+ G L A N G L+ ++
Sbjct: 22 EGLLSFLLTHKKRL-TDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE 80
Query: 183 S------------YTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLL 230
T LH A+ + L++ A +H +
Sbjct: 81 FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQ-------------ARGRF 127
Query: 231 SLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSG--MADVDIKTKERRVTALHLAAEN 288
+ G PL +AA + + ++G AD+ + T LH
Sbjct: 128 FQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGN-TVLHALVAI 186
Query: 289 G---------YVECLRILLENHANCNERNHKEQI-------PLHLAAKCQSVECMEMLLR 332
+ +LL A + E + PL +AAK + + ++R
Sbjct: 187 ADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR 246
Query: 333 KGSQVNASDCDNRTPLH 349
+ A+ H
Sbjct: 247 REIADAAA----HHHHH 259
Score = 97.9 bits (244), Expect = 9e-23
Identities = 36/211 (17%), Positives = 72/211 (34%), Gaps = 48/211 (22%)
Query: 246 PLHIAADRGLISCLKAILD---SGMADVDIKTKERRV---TALHLAAEN---GYVECLRI 296
L RG L+ +L + + + T L A N G + + I
Sbjct: 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPI 67
Query: 297 LLEN-----------HANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN- 344
LL+ ++ + ++ Q LH+A + + +E+L+ KG+ V+A
Sbjct: 68 LLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRF 127
Query: 345 -------------RTPLHASLSKNILSVHPLEILLKWG---ANVNARDIFGYSPIHIAAL 388
PL + N + + L + G A++ +D G + +H
Sbjct: 128 FQPKDEGGYFYFGELPLSLAACTNQPHI--VHYLTENGHKQADLRRQDSRGNTVLHALVA 185
Query: 389 SE---------LSQCVDCLIMHGADISSKTP 410
+++ D L++ A + T
Sbjct: 186 IADNTRENTKFVTKMYDLLLIKCAKLFPDTN 216
Score = 86.4 bits (214), Expect = 8e-19
Identities = 31/234 (13%), Positives = 57/234 (24%), Gaps = 72/234 (30%)
Query: 123 TALLWCVFVKREDLLDA---LHQLGADLSN------------DKYG--ALHLAAFNGSIK 165
T L + D L + N G ALH+A
Sbjct: 48 TCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKH 107
Query: 166 GCSWLMLHGHDIN---------------FTKDSYTPLHFAVLGNYVDCAKFLIKNKAHIH 210
L+ G D++ + PL A N +L +N
Sbjct: 108 YVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK-- 165
Query: 211 ETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRG---------LISCLKA 261
Q + +++G + LH +
Sbjct: 166 ----------------------QADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDL 203
Query: 262 ILDSGMADVDIKTKERRV------TALHLAAENGYVECLRILLENHANCNERNH 309
+L A + T + + L +AA+ G + + ++ +H
Sbjct: 204 LLIKC-AKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHH 256
Score = 78.7 bits (194), Expect = 3e-16
Identities = 35/184 (19%), Positives = 62/184 (33%), Gaps = 43/184 (23%)
Query: 272 IKTKERRVTALHLAAENGYVECL----RILLENHANCNERNHKEQI----PLHLAAKCQS 323
+K R L G + L LL + + +E L A S
Sbjct: 1 MKVFNR--PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLS 58
Query: 324 ---VECMEMLLRKG-----------SQVNASDCDNRTPLHASLSKNILSVHPLEILLKWG 369
+ + +LL S +T LH ++ + +E+L++ G
Sbjct: 59 AGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHY--VELLVEKG 116
Query: 370 ANVNARDI--------------FGYSPIHIAALSELSQCVDCLIMHG---ADISSKTPSG 412
A+V+A+ FG P+ +AA + V L +G AD+ + G
Sbjct: 117 ADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRG 176
Query: 413 SSAL 416
++ L
Sbjct: 177 NTVL 180
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 107 bits (270), Expect = 2e-26
Identities = 53/277 (19%), Positives = 89/277 (32%), Gaps = 71/277 (25%)
Query: 79 RASLLEAMKMSSGDVNVL-----YAIENSLYEPDEMATLFSKASQAEKTTALLWCVFVKR 133
R L + S G L Y NS Y D +++ S + T L+ V +
Sbjct: 3 RDRLFSVV--SRGVPEELTGLLEYLRWNSKYLTDS---AYTEGSTGK--TCLMKAVLNLQ 55
Query: 134 EDLLDALHQL---GADLSN------------DKYG--ALHLAAFNGSIKGCSWLMLHGHD 176
+ + + L D N G ALH+A S++ L+ +G D
Sbjct: 56 DGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD 115
Query: 177 IN--------------FTKDSYTPLHFAVLGNYVDCAKFLIKN---KAHIHE------TI 213
++ PL A D +L++N A + T+
Sbjct: 116 VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTV 175
Query: 214 VHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIK 273
+H+ V N+ S L I GL+ + + +I
Sbjct: 176 LHALVMIAD-----------------NSPENSALVIHMYDGLLQMGARLCPTV-QLEEIS 217
Query: 274 TKERRVTALHLAAENGYVECLRILLENHANCNERNHK 310
+ T L LAA+ G +E R +L+ + +H
Sbjct: 218 NHQGL-TPLKLAAKEGKIEIFRHILQREFSGAAAHHH 253
Score = 98.3 bits (245), Expect = 5e-23
Identities = 38/224 (16%), Positives = 70/224 (31%), Gaps = 56/224 (25%)
Query: 246 PLHIAADRG-------LISCLKAILDSGMADVDIKTKERRVTALHLAA---ENGYVECLR 295
L RG L+ L+ + + T L A ++G C+
Sbjct: 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGK-TCLMKAVLNLQDGVNACIM 63
Query: 296 ILLE-----------NHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDN 344
LL+ +A C + ++ LH+A + +S++C+++L+ G+ V+ C
Sbjct: 64 PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123
Query: 345 -------------RTPLHASLSKNILSVHPLEILLKWG---ANVNARDIFGYSPIHIAAL 388
PL + V + LL+ A++ A D G + +H +
Sbjct: 124 FFQKHQGTCFYFGELPLSLAACTKQWDV--VTYLLENPHQPASLEATDSLGNTVLHALVM 181
Query: 389 SE----------------LSQCVDCLIMHGADISSKTPSGSSAL 416
L Q L G + L
Sbjct: 182 IADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPL 225
Score = 52.5 bits (126), Expect = 2e-07
Identities = 15/124 (12%), Positives = 33/124 (26%), Gaps = 28/124 (22%)
Query: 148 SNDKYG--ALHLAAFNGSIKGCSWLMLHGH---DINF-TKDSYTPLHFAVLG-------- 193
+ +G L LAA ++L+ + H + T LH V+
Sbjct: 131 TCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENS 190
Query: 194 --------NYVDCAKFLIKNKAHIHE------TIVHSAVSTNAVDCVQLLLSLQINPNVL 239
+ L T + A ++ + +L + +
Sbjct: 191 ALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAA 250
Query: 240 NNKG 243
++
Sbjct: 251 HHHH 254
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 102 bits (255), Expect = 2e-23
Identities = 42/384 (10%), Positives = 90/384 (23%), Gaps = 64/384 (16%)
Query: 53 VDNMRTDSLEETISDELSYKVCKESIRASLLEAMKMSSGDVNVLYAIENSLYEPDEMATL 112
++N D I L + + I A+ L M +S + +
Sbjct: 9 IENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEA---------------IHIF 53
Query: 113 FSKASQAEKTTALLWCVFVKREDLLDALHQLGADLSNDKYGALHLAAFNGSIKG---CSW 169
E+ LL + L +AA G
Sbjct: 54 LPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCL 113
Query: 170 LMLHGHDIN-FTKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQL 228
L+ + ++Y A ++ L +
Sbjct: 114 LLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAP--------------------- 152
Query: 229 LLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAA-E 287
++ + +AA+ G + L + + + + A AA
Sbjct: 153 ----TEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVG 208
Query: 288 NGYVECLRILLENHANCNERNHKEQIPLH------LAAKCQSVECMEMLLRKGSQ----- 336
G+ + LL+ E +A ++ M + +
Sbjct: 209 RGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFD 268
Query: 337 -VNASDC-DNRTPLHASLSKN------ILSVHPLEILLKWGANVNARDIFGYSPIHIAAL 388
V S+C L + +N + +K A + +A
Sbjct: 269 LVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALR 328
Query: 389 SELSQCVDCLIMHGADISSKTPSG 412
L+ + ++ +
Sbjct: 329 LGNQGACALLLSIPSVLALTKANN 352
Score = 90.4 bits (224), Expect = 2e-19
Identities = 34/254 (13%), Positives = 75/254 (29%), Gaps = 24/254 (9%)
Query: 188 HFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPL 247
H+ + K+ + + ++A+D + LLL+ V+ +
Sbjct: 73 HYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAF 132
Query: 248 HIAADRGLISCLKAILDSGMADVDIKTKERR-VTALHLAAENGYVECLRILLENHANCNE 306
+AA+ G + L + + + + A LAAENG++ L L E
Sbjct: 133 RLAAENGHLHVLNRLCELA-PTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEAT 191
Query: 307 RNHKEQ--IPLHLAAKCQS-VECMEMLLRKGSQVNASDCDNRTPLHASLSKNILS----V 359
+ + AA + + LL + ++ ++ I +
Sbjct: 192 AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRL 251
Query: 360 HPLEILLKWGANVNARDI-------FGYSPIHIAALSELSQCVDCL--------IMHGAD 404
+ K D+ G+ + +D + I A
Sbjct: 252 KEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAP 311
Query: 405 ISSKTPSGSSALSI 418
++ + L +
Sbjct: 312 TATIPGDANELLRL 325
Score = 63.4 bits (154), Expect = 1e-10
Identities = 26/203 (12%), Positives = 63/203 (31%), Gaps = 24/203 (11%)
Query: 110 ATLFSKASQAEKTTALLWCVFVK-REDLLDALHQLGADLSNDKYGALHLAAFNGSIKGCS 168
T + QAE A W + ++++ L L+ A G
Sbjct: 187 PTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY----AEIHEFEYGEKYVNP 242
Query: 169 WLMLHGHDINFTKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNA---VDC 225
++ H + + + + + D K++ ++ + + N +D
Sbjct: 243 FIARHVNRLK---EMHDAFKLSNPDGVFDLVT---KSECLQGFYMLRNLIRRNDEVLLDD 296
Query: 226 VQLLLSLQ-----INPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVT 280
++ LLS+ + L +A G +L + + +
Sbjct: 297 IRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP-SVLALTKA----N 351
Query: 281 ALHLAAENGYVECLRILLENHAN 303
++ G ++ + LE+H +
Sbjct: 352 NYYINETGGRLDLRAVALEHHHH 374
Score = 39.9 bits (93), Expect = 0.003
Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 13/110 (11%)
Query: 112 LFSKASQAEKTTALLWCVFVKREDLLDALHQL--------GADLS-NDKYG--ALHLAAF 160
L +K+ + L + E LLD + L A + L LA
Sbjct: 269 LVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALR 328
Query: 161 NGSIKGCSWLMLHGHDINFTKDSYTPLHFAVLGNYVDCAKFLIKNKAHIH 210
G+ C+ L+ + TK + G +D +++ H H
Sbjct: 329 LGNQGACALLLSIPSVLALTKA--NNYYINETGGRLDLRAVALEHHHHHH 376
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 85.5 bits (213), Expect = 2e-20
Identities = 39/91 (42%), Positives = 60/91 (65%), Gaps = 2/91 (2%)
Query: 280 TALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNA 339
T LHLAA NG++E +++LLE A+ N ++ + PLHLAA+ +E +++LL G+ VNA
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 340 SDCDNRTPLHASLSKNILSVHPLEILLKWGA 370
D + RTPLH + L V +++LL+ GA
Sbjct: 64 KDKNGRTPLHLAARNGHLEV--VKLLLEAGA 92
Score = 81.6 bits (203), Expect = 5e-19
Identities = 38/90 (42%), Positives = 58/90 (64%), Gaps = 2/90 (2%)
Query: 314 PLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVN 373
PLHLAA+ +E +++LL G+ VNA D + RTPLH + L V +++LL+ GA+VN
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV--VKLLLEAGADVN 62
Query: 374 ARDIFGYSPIHIAALSELSQCVDCLIMHGA 403
A+D G +P+H+AA + + V L+ GA
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 78.6 bits (195), Expect = 5e-18
Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 29/121 (23%)
Query: 182 DSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNN 241
+ TPLH A +++ K L++ A + N +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGA---------------------------DVNAKDK 33
Query: 242 KGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENH 301
G +PLH+AA G + +K +L++G ADV+ K K R T LHLAA NG++E +++LLE
Sbjct: 34 NGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAG 91
Query: 302 A 302
A
Sbjct: 92 A 92
Score = 62.4 bits (153), Expect = 3e-12
Identities = 28/76 (36%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 343 DNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHG 402
+ RTPLH + L V +++LL+ GA+VNA+D G +P+H+AA + + V L+ G
Sbjct: 1 NGRTPLHLAARNGHLEV--VKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 403 ADISSKTPSGSSALSI 418
AD+++K +G + L +
Sbjct: 59 ADVNAKDKNGRTPLHL 74
Score = 62.0 bits (152), Expect = 4e-12
Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 154 ALHLAAFNGSIKGCSWLMLHGHDIN-FTKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHE- 211
LHLAA NG ++ L+ G D+N K+ TPLH A +++ K L++ A ++
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 212 -----TIVHSAVSTNAVDCVQLLLS 231
T +H A ++ V+LLL
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 60.8 bits (149), Expect = 1e-11
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 4/69 (5%)
Query: 144 GADL-SNDKYG--ALHLAAFNGSIKGCSWLMLHGHDINF-TKDSYTPLHFAVLGNYVDCA 199
GAD+ + DK G LHLAA NG ++ L+ G D+N K+ TPLH A +++
Sbjct: 25 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV 84
Query: 200 KFLIKNKAH 208
K L++ A+
Sbjct: 85 KLLLEAGAY 93
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 80.3 bits (199), Expect = 3e-18
Identities = 27/114 (23%), Positives = 51/114 (44%), Gaps = 5/114 (4%)
Query: 217 AVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKE 276
S + L+ + + + L AA G ++ ++ +G ADV K K
Sbjct: 1 GSSHHHHHHSSGLVPRGSH---MGSDLGKKLLEAARAGQDDEVRILMANG-ADVAAKDKN 56
Query: 277 RRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECMEML 330
T LHLAA NG++E +++LLE A+ ++ + ++ + + E+L
Sbjct: 57 GS-TPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 78.8 bits (195), Expect = 7e-18
Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
Query: 318 AAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDI 377
+ L+ +GS + + D L + + IL+ GA+V A+D
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGS---DLGKKLLEAARAGQDDE--VRILMANGADVAAKDK 55
Query: 378 FGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRK 432
G +P+H+AA + + V L+ GAD+ ++ G +A I + N ++ + +
Sbjct: 56 NGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110
Score = 78.8 bits (195), Expect = 8e-18
Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 5/110 (4%)
Query: 250 AADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNH 309
+ ++ G + + L AA G + +RIL+ N A+ ++
Sbjct: 1 GSSHHHHHHSSGLVPRG-SHMGSDLG----KKLLEAARAGQDDEVRILMANGADVAAKDK 55
Query: 310 KEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSV 359
PLHLAA+ +E +++LL G+ V A D +T S+ +
Sbjct: 56 NGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDL 105
Score = 73.4 bits (181), Expect = 6e-16
Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 31/140 (22%)
Query: 158 AAFNGSIKGCSWLMLHGHDINFTKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSA 217
+ + S L+ G + D L A D + L+ N A
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMG--SDLGKKLLEAARAGQDDEVRILMANGA---------- 48
Query: 218 VSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKER 277
+ + G +PLH+AA G + +K +L++G ADV + K
Sbjct: 49 -----------------DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG-ADVXAQDKFG 90
Query: 278 RVTALHLAAENGYVECLRIL 297
+ TA ++ +NG + IL
Sbjct: 91 K-TAFDISIDNGNEDLAEIL 109
Score = 68.0 bits (167), Expect = 5e-14
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 144 GADLSNDKYGALHLAAFNGSIKGCSWLMLHGHDINFT-KDSYTPLHFAVLGNYVDCAKFL 202
G+ + +D L AA G LM +G D+ K+ TPLH A +++ K L
Sbjct: 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLL 76
Query: 203 IKNKAHIHE------TIVHSAVSTNAVDCVQLL 229
++ A + T ++ D ++L
Sbjct: 77 LEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 80.7 bits (198), Expect = 1e-15
Identities = 107/684 (15%), Positives = 196/684 (28%), Gaps = 208/684 (30%)
Query: 2 ELDVKKNTLDRSRSFNNDTRFP-LALMRSKTSKSYSTKKAMFNQLNDEKPTMVDNMRTDS 60
D K + D +S + + + + S + +F L ++ MV +
Sbjct: 32 NFDCK-DVQDMPKSILSKEEIDHIIMSKDAVSGTL----RLFWTLLSKQEEMVQKFVEEV 86
Query: 61 LEETISDELSYKVCKESIRASLLEAMKMSSGDVNVLYAIENSLYEPDEMATLFSKASQAE 120
L +YK I+ + S + + LY ++ +F+K
Sbjct: 87 LRI------NYKFLMSPIK----TEQRQPSMMTRMYIEQRDRLYNDNQ---VFAK----- 128
Query: 121 KTTALLWCVFVKREDLLDALHQLGADLSNDKYGALHLAAFNGSIKGC--SWLMLHGHDIN 178
V R L Q +L K + G + G +W+ L
Sbjct: 129 --------YNVSRLQPYLKLRQALLELRPAKNVLID-----G-VLGSGKTWVAL------ 168
Query: 179 FTKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNV 238
V +Y K K I + + S V + L QI+PN
Sbjct: 169 -----------DVCLSY----KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 239 LNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILL 298
+ H + + I I+ + RR L Y CL +L
Sbjct: 214 TSR----SDHSSNIKLRIH-------------SIQAELRR-----LLKSKPYENCLLVL- 250
Query: 299 ENHANCNERNHKEQIPLHLAAKCQSVECMEMLL--RKGSQVNASDCDNRTPLHASLSKNI 356
N C+ +LL R + T H SL +
Sbjct: 251 ---LNVQNAKAWN----AFNLSCK------ILLTTRFKQVTDFLSAATTT--HISLDHHS 295
Query: 357 LSVHP---LEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGS 413
+++ P +LLK+ + +D+ P + +
Sbjct: 296 MTLTPDEVKSLLLKY-LDCRPQDL----PREVLTTNPR---------------------- 328
Query: 414 SALSII---MRNTPS--------SISSVRKKLDSSISLQDPEASTKDIELKLNFKY--IL 460
LSII +R+ + + + ++SS+++ +P E + F +
Sbjct: 329 -RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA------EYRKMFDRLSVF 381
Query: 461 QNGPDGEIGMLKIFQNDGQKEILE---HPLCEAFLYVKWEKMKKFYLFRLVLSSIFVLVL 517
+L + D K + + L + L K K + + L L +
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE----LKV 437
Query: 518 SVYVLTTLAQ---DCYNASKNITLFTPTFCTKNSE-------IGH-------------F- 553
+ L + D YN K F IGH F
Sbjct: 438 KLENEYALHRSIVDHYNIPKT---FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 554 -LLRNPDFME-------TVWYVLA-LLATIELIRKIFGLVEYASFREYCSHVTNLFEWYM 604
+ + F+E T W +L T++ ++ ++ Y +E +
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF---------YKPYICDNDPKYERLV 545
Query: 605 I-ISVFLISC----VYTKRTYIWQ 623
I FL + +K T + +
Sbjct: 546 NAILDFLPKIEENLICSKYTDLLR 569
Score = 33.7 bits (76), Expect = 0.37
Identities = 70/427 (16%), Positives = 125/427 (29%), Gaps = 136/427 (31%)
Query: 465 DGEIGMLKIFQNDGQKEILEHPLCEAFLYVKWEKMKKFYLFRLVLSSIFVLVLSVYVLTT 524
D E G + K+IL F + + + V +LS +
Sbjct: 8 DFETGEHQY----QYKDILSV-----FE----DAFVDNFDCKDVQDMPKS-ILSKEEIDH 53
Query: 525 LAQDCYNASKNITLFTPTFCTKNSEIGHFLLRNPDFMETV------WYVLALLATI--EL 576
+ S + LF T +K E+ F+E V + L++ I E
Sbjct: 54 IIMSKDAVSGTLRLFW-TLLSKQEEMVQ------KFVEEVLRINYKF----LMSPIKTEQ 102
Query: 577 IRKIFGLVEYASFREYCSHVTNLFEWYMIISVFLISCVYTKRTYIWQNHVGAVAVLLGWS 636
+ Y R+ + +F Y +V + R + + ++ G
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKY---NVSRLQPYLKLRQALLELRPAKNVLIDG-- 157
Query: 637 NLMGMIGQLPSV-GTYVAMFSRVQLEF------------------LKLFQAYICLLVGFT 677
+ G+ + V + +VQ + L++ Q LL
Sbjct: 158 --VLGSGK--TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK---LLYQID 210
Query: 678 LTFCIVFPSEDRFQNPIIGFINILVMMTGELNVNEV------LLGTEAKPPVLLKGTAHI 731
+ D N +L ++ + LL ++ LL
Sbjct: 211 PNWT---SRSDHSSNI-------------KLRIHSIQAELRRLLKSKPYENCLL------ 248
Query: 732 VFTIFMLFVTVVLMNLLVGIAVQDIQGLH------KTAGLDKLV--RQTELIHSLELALF 783
VL+N VQ+ + + K L+ R ++ L A
Sbjct: 249 -----------VLLN------VQNAKAWNAFNLSCKI-----LLTTRFKQVTDFLSAAT- 285
Query: 784 QGYLPNRIVSMLKSQALLTPSSYTVALNVKPLNPRETRLPKEV-----MLNALDIARQRR 838
+S+ LTP +L +K L+ R LP+EV ++ IA R
Sbjct: 286 -----TTHISLDHHSMTLTPD-EVKSLLLKYLDCRPQDLPREVLTTNPRRLSI-IAESIR 338
Query: 839 IDPHFIW 845
W
Sbjct: 339 DGLA-TW 344
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 72.1 bits (176), Expect = 2e-13
Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 4/138 (2%)
Query: 295 RILLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDC--DNRTPLHASL 352
R E + H + + S+ M L G+ VN + DN TPL +
Sbjct: 184 RSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQAT 243
Query: 353 SKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSG 412
+ N S+ E LL+ GANVN D G P+H A + + + GAD+ ++ G
Sbjct: 244 AAN--SLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEG 301
Query: 413 SSALSIIMRNTPSSISSV 430
L+I M + I ++
Sbjct: 302 RDPLTIAMETANADIVTL 319
Score = 62.1 bits (150), Expect = 2e-10
Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 1/106 (0%)
Query: 245 SPLHIAADRGLISCLKAILDSGMADVD-IKTKERRVTALHLAAENGYVECLRILLENHAN 303
+ L A+ A + ADV+ + + T L A + LL+N AN
Sbjct: 201 ALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN 260
Query: 304 CNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLH 349
N+ + + PLH A + L++G+ + A D + R PL
Sbjct: 261 VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLT 306
Score = 61.3 bits (148), Expect = 5e-10
Identities = 35/137 (25%), Positives = 53/137 (38%), Gaps = 4/137 (2%)
Query: 303 NCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLHASLSKNILSVHPL 362
N PL A S+ E LL+ G+ VN +D R PLH +
Sbjct: 227 NWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILG--HTGLA 284
Query: 363 EILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIM--HGADISSKTPSGSSALSIIM 420
+ LK GA++ ARD G P+ IA + + V L + +++ +G I
Sbjct: 285 CLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIF 344
Query: 421 RNTPSSISSVRKKLDSS 437
R+ S +KL
Sbjct: 345 RDFSLMASDDPEKLSRR 361
Score = 59.0 bits (142), Expect = 3e-09
Identities = 24/142 (16%), Positives = 50/142 (35%), Gaps = 5/142 (3%)
Query: 205 NKAHIHETIVHSAVSTNAVDCVQLLLSL--QINPNVLNNKGVSPLHIAADRGLISCLKAI 262
H + ++ ++ + L+ +N +PL A + + +
Sbjct: 195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFL 254
Query: 263 LDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQ 322
L +G A+V+ LH A G+ + L+ A+ R+ + + PL +A +
Sbjct: 255 LQNG-ANVNQAD-SAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETA 312
Query: 323 SVECMEMLLRKGSQVNASDCDN 344
+ + LLR A
Sbjct: 313 NADI-VTLLRLAKMREAEAAQG 333
Score = 57.1 bits (137), Expect = 1e-08
Identities = 31/148 (20%), Positives = 49/148 (33%), Gaps = 4/148 (2%)
Query: 167 CSWLMLHGHDINFTKDSYTPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCV 226
LH + F + P + A N + T + A + N++
Sbjct: 192 EDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLAC 251
Query: 227 QLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAA 286
+ LL N N ++ G PLH A G L G AD+ + E R L +A
Sbjct: 252 EFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRG-ADLGARDSEGR-DPLTIAM 309
Query: 287 ENGYVECLRILLENHANCNERNHKEQIP 314
E + + +L A E +
Sbjct: 310 ETANADIVTLLR--LAKMREAEAAQGQA 335
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 70.4 bits (172), Expect = 2e-13
Identities = 28/119 (23%), Positives = 47/119 (39%), Gaps = 4/119 (3%)
Query: 253 RGLISCLKAILDSGMADVDIKTKERRVTALHLAAENG---YVECLRILLENHANCNERNH 309
GL+ +D E TALHLA + + + L++N N +++
Sbjct: 144 FGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTG 203
Query: 310 KEQIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLH-ASLSKNILSVHPLEILLK 367
K LH + EC+++LLR + + ++ TPL A K+ L L
Sbjct: 204 KGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS 262
Score = 66.2 bits (161), Expect = 6e-12
Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 7/112 (6%)
Query: 318 AAKCQSVECMEMLLRKGSQVNA------SDCDNRTPLH-ASLSKNILSVHPLEILLKWGA 370
A K + + + G + + T LH A S + S+H ++ L++
Sbjct: 137 AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG 196
Query: 371 NVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRN 422
N++ + G + +H L++ ++C+ L+ A I SG + L I R
Sbjct: 197 NLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRL 248
Score = 65.0 bits (158), Expect = 1e-11
Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 314 PLHLAAKC---QSVECMEMLLRKGSQVNASDCDNRTPLH-ASLSKNILSVHPLEILLKWG 369
LHLA + S+ ++ L++ ++ T LH L+ N + ++LL+
Sbjct: 172 ALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECL---KLLLRGK 228
Query: 370 ANVNARDIFGYSPIHIAALSELSQCVDCLIM 400
A++ + G +P+ IA + C + L
Sbjct: 229 ASIEIANESGETPLDIAKRLKHEHCEELLTQ 259
Score = 62.3 bits (151), Expect = 1e-10
Identities = 35/189 (18%), Positives = 59/189 (31%), Gaps = 35/189 (18%)
Query: 127 WCVFVKRE--DLLDALHQLGADLSNDKYGALHLAAFNGSIKGCSWLMLHGHDINFTKDSY 184
+ +++ D LH L + L A +G + +GH+
Sbjct: 116 ERRYARKKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHE-----PDE 170
Query: 185 TPLHFAVLGNYVDCAKFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGV 244
T LH AV +V ++ V L+ N + KG
Sbjct: 171 TALHLAVR------------------------SVDRTSLHIVDFLVQNSGNLDKQTGKGS 206
Query: 245 SPLHIAADRGLISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRILLENHANC 304
+ LH CLK +L A ++I + T L +A + C +L + A
Sbjct: 207 TALHYCCLTDNAECLKLLLRGK-ASIEIANESGE-TPLDIAKRLKHEHCEELLTQ--ALS 262
Query: 305 NERNHKEQI 313
N +
Sbjct: 263 GRFNSHVHV 271
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 70.0 bits (171), Expect = 4e-13
Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 4/113 (3%)
Query: 255 LISCLKAILDSGMADVDIKTKERRVTALHLAAENGYVECLRI---LLENHANCNERNHKE 311
++ D G + LHLA + L + +++N + + +
Sbjct: 167 VLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADG 226
Query: 312 QIPLHLAAKCQSVECMEMLLRKGSQVNASDCDNRTPLH-ASLSKNILSVHPLE 363
LH AA +C+++LL+ + V + T L A + LE
Sbjct: 227 NTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLE 279
Score = 68.1 bits (166), Expect = 2e-12
Identities = 24/129 (18%), Positives = 46/129 (35%), Gaps = 7/129 (5%)
Query: 306 ERNHKEQIPLHLAAKCQSVECMEMLLRKGSQVNAS------DCDNRTPLH-ASLSKNILS 358
R E L A + + + G LH A N S
Sbjct: 146 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS 205
Query: 359 VHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALSI 418
+ ++ +++ G +++A+ G + +H AAL C+ L+ A + + +G +AL I
Sbjct: 206 LPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDI 265
Query: 419 IMRNTPSSI 427
+
Sbjct: 266 ARKKHHKEC 274
Score = 64.2 bits (156), Expect = 3e-11
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 314 PLHLA---AKCQSVECMEMLLRKGSQVNASDCDNRTPLH-ASLSKNILSVHPLEILLKWG 369
LHLA A S+ ++ +++ G ++A D T LH A+L + ++LLK
Sbjct: 193 VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCL---KLLLKGR 249
Query: 370 ANVNARDIFGYSPIHIAALSELSQCVDCLIM 400
A V + G + + IA +C + L
Sbjct: 250 ALVGTVNEAGETALDIARKKHHKECEELLEQ 280
Score = 57.7 bits (139), Expect = 4e-09
Identities = 27/119 (22%), Positives = 41/119 (34%), Gaps = 31/119 (26%)
Query: 144 GADLSNDKYGALHLAAFNG---SIKGCSWLMLHGHDINF-TKDSYTPLHFAVLGNYVDCA 199
G D + LHLA S+ +++ +G ++ D T LH+A L N DC
Sbjct: 183 GPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCL 242
Query: 200 KFLIKNKAHIHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISC 258
K L+K +A +N G + L IA + C
Sbjct: 243 KLLLKGRA---------------------------LVGTVNEAGETALDIARKKHHKEC 274
Score = 56.2 bits (135), Expect = 2e-08
Identities = 29/165 (17%), Positives = 46/165 (27%), Gaps = 35/165 (21%)
Query: 156 HLAAFNGSIKGCSWLMLHGHDINFTK-------DSYTPLHFAVLGNYVDCAKFLIKNKAH 208
A N + +G D LH AV + A +
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVK--VANQASLPL----- 208
Query: 209 IHETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISCLKAILDSGMA 268
V ++ + + G + LH AA CLK +L A
Sbjct: 209 -----------------VDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGR-A 250
Query: 269 DVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQI 313
V + TAL +A + + EC +L + A +
Sbjct: 251 LVGTVNEAGE-TALDIARKKHHKECEELLEQ--AQAGTFAFPLHV 292
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 65.3 bits (159), Expect = 4e-11
Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 340 SDCDNRTPLH-ASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVDCL 398
+ LH A N S+ ++ +++ G +++A+ G + +H AAL C+ L
Sbjct: 167 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLL 226
Query: 399 IMHGADISSKTPSGSSALSIIMRN 422
+ A + + +G +AL I +
Sbjct: 227 LKGRALVGTVNEAGETALDIARKK 250
Score = 63.8 bits (155), Expect = 1e-10
Identities = 34/189 (17%), Positives = 67/189 (35%), Gaps = 13/189 (6%)
Query: 280 TALHLAAENGYVECLRI---LLENHANCNERNHKEQIPLHLAAKCQSVECMEMLLRKGSQ 336
LHLA + L + +++N + + + LH AA +C+++LL+ +
Sbjct: 173 LVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRAL 232
Query: 337 VNASDCDNRTPLHASLSKNILSVHPLEILLKWGANVNARDIFGYSPIHIAALSELSQCVD 396
V + T L +++ E+L + A+ P+H+ +S +
Sbjct: 233 VGTVNEAGETAL--DIARKKHHKECEELLEQ------AQAGTFAFPLHVDYSWVIST-EN 283
Query: 397 CLIMHGADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSSISLQDPEASTKDIEL-KLN 455
S S SS ++ + S + I + +A+ K L KL
Sbjct: 284 LSSDSSLSSPSALNSLSSPSALNSTASNSPGIEGLSNKEMRILMLGLDAAGKTTILYKLK 343
Query: 456 FKYILQNGP 464
+ P
Sbjct: 344 LGQSVTTIP 352
Score = 54.1 bits (130), Expect = 1e-07
Identities = 35/151 (23%), Positives = 56/151 (37%), Gaps = 19/151 (12%)
Query: 115 KASQAEKTTALLWCVFVKREDLLDALHQLGADLSNDKYGALHLAAFN---GSIKGCSWLM 171
A ++L F +D L G D + LHLA S+ +++
Sbjct: 138 TAICNRDLLSVLE-AFANGQDFGQPLP--GPDAQAPEELVLHLAVKVANQASLPLVDFII 194
Query: 172 LHGHDINF-TKDSYTPLHFAVLGNYVDCAKFLIKNKAHIH------ETIVHSAVSTNAVD 224
+G ++ D T LH+A L N DC K L+K +A + ET + A + +
Sbjct: 195 QNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKE 254
Query: 225 CVQLLLSLQINPNVLNNKGVSPLHIAADRGL 255
C +LL PLH+ +
Sbjct: 255 CEELL------EQAQAGTFAFPLHVDYSWVI 279
Score = 53.4 bits (128), Expect = 2e-07
Identities = 28/124 (22%), Positives = 43/124 (34%), Gaps = 16/124 (12%)
Query: 155 LHLAAFNGSIKGCSWLMLHGHDINFT-------KDSYTPLHFAVL---GNYVDCAKFLIK 204
L A N + +G D LH AV + F+I+
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ 195
Query: 205 NKAHIH------ETIVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAADRGLISC 258
N H+ T +H A N DC++LLL + +N G + L IA + C
Sbjct: 196 NGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKEC 255
Query: 259 LKAI 262
+ +
Sbjct: 256 EELL 259
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.8 bits (139), Expect = 2e-08
Identities = 92/588 (15%), Positives = 175/588 (29%), Gaps = 202/588 (34%)
Query: 20 TRFPLALMRSKTSKSYSTKKAMF---NQLNDE----KPTMVDNMRTDSLEETISD-ELSY 71
TR PL L A F +QL ++ P + D +E + EL
Sbjct: 6 TR-PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAAD--DEPTTPAELVG 62
Query: 72 K----VCKESIRASLLEAMKMSSGDV---NVLYAIENSLYEPDEMATLFSKASQAEKTTA 124
K V +SL+E K+ D L EN E +++ L +K Q TT
Sbjct: 63 KFLGYV------SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 125 LLWCVFVKREDLL----DALHQLGADLSNDKYGALHLAAFNGSIKGCSWLML----HGHD 176
+ K ++L+ A AL A G+ + L+ G+
Sbjct: 117 V------KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQ----LVAIFGGQGNT 166
Query: 177 INFTK------DSYTPL-------HFAVLGNYV----DCAKFL---------IKNKAHIH 210
++ + +Y L L + D K ++N ++
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 211 ET--IVHSAVSTNAVDCVQLLLSLQINPNVLNNKGVSPLHIAAD-RGLISCLKAILDSGM 267
+ ++ +S + +QL + G +P + + +G + +
Sbjct: 227 DKDYLLSIPISCPLIGVIQLAHYV----VTAKLLGFTPGELRSYLKGATGHSQGL----- 277
Query: 268 ADVDIKTKERRVTALHLAAENGYVECLRILLENHANCNERNHKEQIPLHLAAKCQSVECM 327
VTA+ +A + + + + +
Sbjct: 278 -----------VTAVAIAETDSWES----FFVS----------------------VRKAI 300
Query: 328 EMLLRKGSQVNASDCDNRTPLHASLSKNIL--SVHPLEILLKWGANVNARDIFGYSPIHI 385
+L G + C P + SL +IL S+ E G P +
Sbjct: 301 TVLFFIGVR-----CYEAYP-NTSLPPSILEDSLENNE-----GV-----------PSPM 338
Query: 386 AALSELSQCVDCLIMHGADISSKTPSGSSALSIIMRNTPSSI-------------SSVRK 432
++S L+Q + + + +S P+ + I + N ++ ++RK
Sbjct: 339 LSISNLTQ--EQVQDYVNKTNSHLPA-GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRK 395
Query: 433 -----KLDSS-----------------ISLQDP------EASTKDIELKLNFKYILQNGP 464
LD S ++ P ++ I L + N
Sbjct: 396 AKAPSGLDQSRIPFSERKLKFSNRFLPVAS--PFHSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 465 DGEIGMLKI--FQ-NDGQ-----KEILEHPLCEAFL--YVKWEKMKKF 502
D ++I + DG + + + + VKWE +F
Sbjct: 454 D-----IQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQF 496
Score = 34.6 bits (79), Expect = 0.19
Identities = 51/313 (16%), Positives = 87/313 (27%), Gaps = 83/313 (26%)
Query: 531 NASKNITLFTPT----FCTKNSEIGHFLLRNPDFMETVWYVLALLATIELIRKIFGLV-- 584
+ S L PT ++ E F P+ E EL+ K G V
Sbjct: 13 HGSLEHVLLVPTASFFIASQLQE--QFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSS 70
Query: 585 -----EYASFREYCSHVTNLFEWYMIISVFLISCVYTKRTYIWQNHVGAVAVLLGWSNLM 639
+ F + + FE Y+ N + A+A L N
Sbjct: 71 LVEPSKVGQFDQVLNLCLTEFE----------------NCYLEGNDIHALAAKLLQENDT 114
Query: 640 GMIGQLPSVGTYVAMFSRVQLEFLK-----LFQAYICLLVGFTLTFCIVF----PSEDRF 690
++ + Y+ + F K LF+A + G +F ++D F
Sbjct: 115 TLVKTKELIKNYITARIMAKRPFDKKSNSALFRA---VGEG-NAQLVAIFGGQGNTDDYF 170
Query: 691 QNPIIGFINILVMMTGELNVNEVLLGTEAKPPVLLKGTAHIVFTIFMLFVTVVLMNLLVG 750
+ EL L V + F L L+
Sbjct: 171 E---------------EL----RDLYQTYHVLV----------GDLIKFSAETLSELIR- 200
Query: 751 IAVQDIQGLHKTAGLD--KLVRQTELIHSLELALFQGYLPNRIVSMLKSQALLTPSSYTV 808
D + + T GL+ + + + YL + +S ++ + Y V
Sbjct: 201 -TTLDAEKVF-TQGLNILEWLENPSNTPDKD------YLLSIPISC-PLIGVIQLAHYVV 251
Query: 809 ALNVKPLNPRETR 821
+ P E R
Sbjct: 252 TAKLLGFTPGELR 264
Score = 33.5 bits (76), Expect = 0.34
Identities = 20/117 (17%), Positives = 34/117 (29%), Gaps = 34/117 (29%)
Query: 403 ADISSKTPSGSSALSIIMRNTPSSISSVRKKLDSSISLQDPEASTKDIELKLNF-KYILQ 461
AD K G S L I+ N P +++ K ++ N+ I +
Sbjct: 1649 ADNHFKDTYGFSILDIV-INNPVNLTIH-------------FGGEKGKRIRENYSAMIFE 1694
Query: 462 NGPDGEIGMLKIFQN---DGQKEILEHPLCEAFL--------------YVKWEKMKK 501
DG++ KIF+ + L +E +K
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSE--KGLLSATQFTQPALTLMEKAAFEDLKS 1749
Score = 28.9 bits (64), Expect = 9.0
Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 26/77 (33%)
Query: 362 LEILLKWGANVNARD----IFGYSPIHIAALSELSQCVDCLIMHGADISSKTPSGSSALS 417
+EI N N + G + AL ++ ++ + + DI L
Sbjct: 1841 VEI-----VNYNVENQQYVAAG----DLRALDTVTNVLNFIKLQKIDI--------IELQ 1883
Query: 418 IIMRNTPSSISSVRKKL 434
+ S+ V L
Sbjct: 1884 KSL-----SLEEVEGHL 1895
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 38.0 bits (87), Expect = 0.003
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 18/44 (40%)
Query: 75 KESIRASLLEA-MKMSSGDVNVLYAIENSLYEPDEMATLFSKAS 117
K++++ L+A +K LY D L KA+
Sbjct: 19 KQALKK--LQASLK---------------LYADDSAPALAIKAT 45
Score = 35.7 bits (81), Expect = 0.022
Identities = 6/24 (25%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 432 KKLDSSISLQDPEASTKDIELKLN 455
KKL +S+ L +++ L +
Sbjct: 23 KKLQASLKLYADDSAPA---LAIK 43
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium
channel, sodium selective, gated ION channel; HET: BNG
PX4; 3.05A {Alpha proteobacterium HIMB114}
Length = 229
Score = 36.5 bits (85), Expect = 0.022
Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 9/85 (10%)
Query: 669 YICLLVGFTLTFCIVFPSEDRFQNPIIGFINILVMMTGELNVNEVLLGTEAKPPVLLKGT 728
YI +G L F P R+ + I I + ++T + V+L +
Sbjct: 145 YIYATMGAIL-FGNDDP--SRWGDLGISLITLFQVLTLS-SWETVMLPMQEIYWW----- 195
Query: 729 AHIVFTIFMLFVTVVLMNLLVGIAV 753
+ + F F++ ++ ++NL++ I V
Sbjct: 196 SWVYFFSFIIICSITILNLVIAILV 220
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated
sodium-selective ION C membrane, metal transport; HET:
PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 3rw0_A*
Length = 285
Score = 36.6 bits (85), Expect = 0.024
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Query: 669 YICLLVGFTLTFCIVFPSEDRFQNPIIGFINILVMMTGELNVNEVLLGTEAKPPVLLKGT 728
YI ++ L F FP + F F + +MT E ++ P
Sbjct: 160 YIFAIMATQL-FGERFP--EWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPY----- 211
Query: 729 AHIVFTIFMLFVTVVLMNLLVGIAVQDIQGLHK 761
A + F F+ VT V++NL+V I V + L++
Sbjct: 212 AWVFFIPFIFVVTFVMINLVVAICVDAMAILNQ 244
>2csb_A Topoisomerase V, TOP61; topoisomerase IB, helix-turn-helix, helix-H
helix, HHH motif, three helix bundle, methanopyrus
kandleri isomerase; 2.30A {Methanopyrus kandleri} SCOP:
a.60.2.4 a.60.2.4 a.60.2.4 a.60.2.4 a.267.1.1 PDB:
2csd_A
Length = 519
Score = 30.8 bits (69), Expect = 2.3
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 661 EFLKLFQAYICLLVGFTLTFCIVFPSEDRFQNPIIGFIN 699
E L+L Q +I L + C + P+EDR+QN I+ +N
Sbjct: 51 ELLELHQNFILLTGSYA---CSIDPTEDRYQNVIVRGVN 86
>3m6z_A Topoisomerase V; helix-hairpin-helix, conformational changes I
protein; HET: PO4; 1.40A {Methanopyrus kandleri} PDB:
3m6k_A* 3m7d_A 3m7g_A
Length = 380
Score = 30.4 bits (68), Expect = 2.4
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 661 EFLKLFQAYICLLVGFTLTFCIVFPSEDRFQNPIIGFIN 699
E L+L Q +I L + C + P+EDR+QN I+ +N
Sbjct: 51 ELLELHQNFILLTGSYA---CSIDPTEDRYQNVIVRGVN 86
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 28.2 bits (63), Expect = 5.7
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 7/68 (10%)
Query: 80 ASLLEAMKMSSGDVNVLYAIENSLYE---PDEMATLFSKASQAEKTTALLWC----VFVK 132
+L +S + LYA+ + Y+ D+ +F + A +
Sbjct: 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS 64
Query: 133 REDLLDAL 140
AL
Sbjct: 65 LGLYEQAL 72
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.399
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,516,810
Number of extensions: 752481
Number of successful extensions: 3322
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1590
Number of HSP's successfully gapped: 310
Length of query: 854
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 752
Effective length of database: 3,853,851
Effective search space: 2898095952
Effective search space used: 2898095952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.7 bits)