BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8170
(843 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 82.4 bits (202), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/187 (31%), Positives = 82/187 (43%), Gaps = 27/187 (14%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRQANGSNVNNRF 105
K + C +C K FS + L +H H K ++C CGK+FS + +L R
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQR-THTGEKPYKCPECGKSFSDKKDLTRHQR-------- 70
Query: 106 SSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLA 165
H K ++C CGK+FSQR NL+ H + H T + C C K +
Sbjct: 71 ------------THTGEKPYKCPECGKSFSQRANLRAH-QRTH-TGEKPYACPECGKSFS 116
Query: 166 TSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLK 224
L+ H H G K Y C C K F+R L+ H++ H E KC CGK F +
Sbjct: 117 QLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGE---KPYKCPECGKSFSR 173
Query: 225 KSNLKAH 231
+ L H
Sbjct: 174 RDALNVH 180
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 90/222 (40%), Gaps = 43/222 (19%)
Query: 105 FSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVL 164
F S++ + + +A+ K + C CGK+FS+ ++L H + H T ++C C K
Sbjct: 4 FGSSSSVAQ--AALEPGEKPYACPECGKSFSRSDHLAEH-QRTH-TGEKPYKCPECGKSF 59
Query: 165 ATSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFL 223
+ L RH H G K Y C C K F++ L H++ H E C CGK F
Sbjct: 60 SDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGE---KPYACPECGKSFS 116
Query: 224 KKSNLKAHIENNHLDYSCLECKAVGEEISFDXXXXXXXXXXXXXXXVISNVYLTCLICFK 283
+ ++L+AH + GE+ C C K
Sbjct: 117 QLAHLRAHQRTH-----------TGEKP------------------------YKCPECGK 141
Query: 284 TFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKT 325
+F E +L H + H + +C C K FSR L H +T
Sbjct: 142 SFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRT 183
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 80/181 (44%), Gaps = 33/181 (18%)
Query: 5 ISEHIKSHEYVENHMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELN 64
++EH ++H + + C C K F +++L RH + H + K +KC +C K FS A L
Sbjct: 37 LAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGE--KPYKCPECGKSFSQRANLR 94
Query: 65 KHSSAIHQRLKLHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRL-- 122
H H K + C CGK+FSQ +L+ HQR
Sbjct: 95 AHQR-THTGEKPYACPECGKSFSQLAHLR------------------------AHQRTHT 129
Query: 123 --KLHECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHNGP 180
K ++C CGK+FS+ +NL H + T ++C C K + +L H H G
Sbjct: 130 GEKPYKCPECGKSFSREDNL--HTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGK 187
Query: 181 K 181
K
Sbjct: 188 K 188
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/250 (23%), Positives = 88/250 (35%), Gaps = 72/250 (28%)
Query: 488 NILEVILQEGKVPNNNAIIQCRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINR 547
++ + L+ G+ P C C K+F+R D L +H R H E G+
Sbjct: 9 SVAQAALEPGEKP-----YACPECGKSFSRSDHLAEHQR-THTGEKPYKCPEC--GKSFS 60
Query: 548 NMLDVILKESGHEIKSRIPCELCYKTFTRKDSLRKHMKIFHTRRNPSANSGNSGTSAPPA 607
+ D+ + H + C C K+F+++ +LR H + HT P A
Sbjct: 61 DKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRT-HTGEKPYA------------ 107
Query: 608 VKLEQNGGEKVENSTSVENSTSVENSTSVENSANVENTSSVDNRTSVGPVAPIDRIPCTL 667
E S A++ RT G P C
Sbjct: 108 ---------------------CPECGKSFSQLAHLR----AHQRTHTG-EKPYK---CPE 138
Query: 668 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDS 727
C K+F+R+D+L H R HT +P +C C KSF+R+D+
Sbjct: 139 CGKSFSREDNLHTHQRT-HTGEKP---------------------YKCPECGKSFSRRDA 176
Query: 728 LKKHNRIFHG 737
L H R G
Sbjct: 177 LNVHQRTHTG 186
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 278 CLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCTKNVSNGILNC 337
C C K+F + DL +H + H + +C C K FS+ NL+ H +T T C
Sbjct: 52 CPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPEC 111
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 54/141 (38%), Gaps = 18/141 (12%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRI-------RCEL 717
C C K+F+R D L +H R HT +P + + + R +C
Sbjct: 24 CPECGKSFSRSDHLAEHQRT-HTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPE 82
Query: 718 CDKSFTRKDSLKKHNRIFHGGADPKVMDEQMARGS--ADFLEVVLNEDGEGEPVSITNEI 775
C KSF+++ +L+ H R H G P E S A GE
Sbjct: 83 CGKSFSQRANLRAHQRT-HTGEKPYACPECGKSFSQLAHLRAHQRTHTGE-------KPY 134
Query: 776 LCKICNRTFTRNYNLKKHMKT 796
C C ++F+R NL H +T
Sbjct: 135 KCPECGKSFSREDNLHTHQRT 155
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 64/155 (41%), Gaps = 15/155 (9%)
Query: 443 ANKIIQCHICLKTFAKKDSLKKHMKVFHT----YISPDAIKEESGEGKPNILEVILQEGK 498
K C C K+F++ D L +H + HT Y P+ K S + + + + +
Sbjct: 18 GEKPYACPECGKSFSRSDHLAEHQRT-HTGEKPYKCPECGKSFSDK------KDLTRHQR 70
Query: 499 VPNNNAIIQCRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESG 558
+C C K+F+++ +LR H R H E G+ + + +
Sbjct: 71 THTGEKPYKCPECGKSFSQRANLRAHQR-THTGEKPYACPEC--GKSFSQLAHLRAHQRT 127
Query: 559 HEIKSRIPCELCYKTFTRKDSLRKHMKIFHTRRNP 593
H + C C K+F+R+D+L H + HT P
Sbjct: 128 HTGEKPYKCPECGKSFSREDNLHTHQRT-HTGEKP 161
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRI-------RCEL 717
C C K+F+++ +L+ H R HT +P + A+ R +C
Sbjct: 80 CPECGKSFSQRANLRAHQRT-HTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPE 138
Query: 718 CDKSFTRKDSLKKHNRIFHGGADP 741
C KSF+R+D+L H R H G P
Sbjct: 139 CGKSFSREDNLHTHQRT-HTGEKP 161
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 50/139 (35%), Gaps = 14/139 (10%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIR-------CEL 717
C C K+F+ K L +H R HT +P + RAN R C
Sbjct: 52 CPECGKSFSDKKDLTRHQRT-HTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPE 110
Query: 718 CDKSFTRKDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILC 777
C KSF++ L+ H R G K + + D L +P C
Sbjct: 111 CGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYK------C 164
Query: 778 KICNRTFTRNYNLKKHMKT 796
C ++F+R L H +T
Sbjct: 165 PECGKSFSRRDALNVHQRT 183
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/144 (21%), Positives = 55/144 (38%), Gaps = 34/144 (23%)
Query: 443 ANKIIQCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNN 502
K +C C K+F+++ +L+ H + HT P A E G+ + + + +
Sbjct: 74 GEKPYKCPECGKSFSQRANLRAHQRT-HTGEKPYAC-PECGKSFSQLAHLRAHQ-RTHTG 130
Query: 503 NAIIQCRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIK 562
+C C K+F+R+D+L H R H +
Sbjct: 131 EKPYKCPECGKSFSREDNLHTHQRT-------------------------------HTGE 159
Query: 563 SRIPCELCYKTFTRKDSLRKHMKI 586
C C K+F+R+D+L H +
Sbjct: 160 KPYKCPECGKSFSRRDALNVHQRT 183
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 20 CELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
C++C K F+ L HL IH D ++ + C+ C KRF +++ KH + IH K H+C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSD--TRPYPCQYCGKRFHQKSDMKKH-TFIHTGEKPHKC 60
Query: 80 DLCGKNFSQRNNL 92
+CGK FSQ +NL
Sbjct: 61 QVCGKAFSQSSNL 73
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVANQL 213
F+C +C K S +L HLLIH+ + Y C+ C K F + ++ H +H E
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGE---KPH 58
Query: 214 KCEFCGKVFLKKSNLKAH 231
KC+ CGK F + SNL H
Sbjct: 59 KCQVCGKAFSQSSNLITH 76
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 126 ECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHNGPK-YTC 184
+C +CGK+F + + L HL +H +D + C C K +K+H IH G K + C
Sbjct: 3 DCKICGKSFKRSSTLSTHLL-IH-SDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKC 60
Query: 185 EICAKEFTRVYELNIHKKLH 204
++C K F++ L H + H
Sbjct: 61 QVCGKAFSQSSNLITHSRKH 80
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 21/96 (21%)
Query: 48 FKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRQANGSNVNNRFSS 107
F C+ C K F ++ L+ H IH + + C CGK F Q++++K+
Sbjct: 2 FDCKICGKSFKRSSTLSTHL-LIHSDTRPYPCQYCGKRFHQKSDMKKH------------ 48
Query: 108 NAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRH 143
+ IH K H+C +CGK FSQ +NL H
Sbjct: 49 --------TFIHTGEKPHKCQVCGKAFSQSSNLITH 76
Score = 38.1 bits (87), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 22/102 (21%)
Query: 78 ECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQR 137
+C +CGK+F + + L IH + + C CGK F Q+
Sbjct: 3 DCKICGKSFKRSSTLSTHL--------------------LIHSDTRPYPCQYCGKRFHQK 42
Query: 138 NNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHNG 179
+++K+H +H T +C VC K + S +L H H G
Sbjct: 43 SDMKKH-TFIH-TGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 5 ISEHIKSHEYVENHMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELN 64
+S H+ H + C+ C K F + ++ +H IH + K KC+ C K FS ++ L
Sbjct: 17 LSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGE--KPHKCQVCGKAFSQSSNLI 74
Query: 65 KHS 67
HS
Sbjct: 75 THS 77
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 278 CLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQH 322
C IC K+F L H+ +H D C++C K F + ++K+H
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKH 48
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 278 CLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMK 324
C C K F + D+ KH +H + +C+ C K FS++ NL H +
Sbjct: 32 CQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSR 78
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 22/70 (31%)
Query: 664 PCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFT 723
PC C K F +K +KKH I HT +P +C++C K+F+
Sbjct: 31 PCQYCGKRFHQKSDMKKHTFI-HTGEKPH---------------------KCQVCGKAFS 68
Query: 724 RKDSLKKHNR 733
+ +L H+R
Sbjct: 69 QSSNLITHSR 78
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 23/77 (29%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C +C K+F R +L H+ I H+ +P C+ C K F +
Sbjct: 4 CKICGKSFKRSSTLSTHLLI-HSDTRP---------------------YPCQYCGKRFHQ 41
Query: 725 KDSLKKHNRIFHGGADP 741
K +KKH I H G P
Sbjct: 42 KSDMKKHTFI-HTGEKP 57
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
Query: 123 KLHECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHNGPK- 181
K ++C CGK+FSQ +NL++H + H T ++C C K + S L++H H G K
Sbjct: 3 KPYKCPECGKSFSQSSNLQKH-QRTH-TGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP 60
Query: 182 YTCEICAKEFTRVYELNIHKKLHEDE 207
Y C C K F+R L+ H++ H+++
Sbjct: 61 YKCPECGKSFSRSDHLSRHQRTHQNK 86
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 20 CELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
C C K F NL +H + H + K +KC +C K FS +++L KH H K ++C
Sbjct: 7 CPECGKSFSQSSNLQKHQRTHTGE--KPYKCPECGKSFSQSSDLQKH-QRTHTGEKPYKC 63
Query: 80 DLCGKNFSQRNNLKR 94
CGK+FS+ ++L R
Sbjct: 64 PECGKSFSRSDHLSR 78
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 49/98 (50%), Gaps = 21/98 (21%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRQANGSNVNNRF 105
K +KC +C K FS ++ L KH H K ++C CGK+FSQ
Sbjct: 3 KPYKCPECGKSFSQSSNLQKH-QRTHTGEKPYKCPECGKSFSQ----------------- 44
Query: 106 SSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRH 143
+++L KH H K ++C CGK+FS+ ++L RH
Sbjct: 45 --SSDLQKH-QRTHTGEKPYKCPECGKSFSRSDHLSRH 79
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVANQL 213
++C C K + S +L++H H G K Y C C K F++ +L H++ H E
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKP---Y 61
Query: 214 KCEFCGKVFLKKSNLKAH 231
KC CGK F + +L H
Sbjct: 62 KCPECGKSFSRSDHLSRH 79
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 48/104 (46%), Gaps = 22/104 (21%)
Query: 75 KLHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRLKLHECDLCGKNF 134
K ++C CGK+FSQ +NL++ H K ++C CGK+F
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQR--------------------THTGEKPYKCPECGKSF 42
Query: 135 SQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHN 178
SQ ++L++H + H T ++C C K + S L RH H
Sbjct: 43 SQSSDLQKH-QRTH-TGEKPYKCPECGKSFSRSDHLSRHQRTHQ 84
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 42/113 (37%), Gaps = 35/113 (30%)
Query: 213 LKCEFCGKVFLKKSNLKAHIENNHLDYSCLECKAVGEEISFDXXXXXXXXXXXXXXXVIS 272
KC CGK F + SNL+ H + GE+
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTH-----------TGEKP--------------------- 32
Query: 273 NVYLTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKT 325
C C K+F DL KH + H + +C C K FSR+ +L +H +T
Sbjct: 33 ---YKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRT 82
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 182 YTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAH--IENNHLDY 239
Y C C K F++ L H++ H E KC CGK F + S+L+ H Y
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRTHTGEKP---YKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 240 SCLEC 244
C EC
Sbjct: 62 KCPEC 66
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 5 ISEHIKSHEYVENHMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELN 64
+ +H ++H + + C C K F +L +H + H + K +KC +C K FS + L+
Sbjct: 20 LQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGE--KPYKCPECGKSFSRSDHLS 77
Query: 65 KH 66
+H
Sbjct: 78 RH 79
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 8/77 (10%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRI-------RCEL 717
C C K+F++ +L+KH R HT +P + ++ R +C
Sbjct: 7 CPECGKSFSQSSNLQKHQRT-HTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPE 65
Query: 718 CDKSFTRKDSLKKHNRI 734
C KSF+R D L +H R
Sbjct: 66 CGKSFSRSDHLSRHQRT 82
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 713 IRCELCDKSFTRKDSLKKHNRIFHGGADPKVMDE--QMARGSADFLEVVLNEDGEGEPVS 770
+C C KSF++ +L+KH R H G P E + S+D + GE
Sbjct: 5 YKCPECGKSFSQSSNLQKHQRT-HTGEKPYKCPECGKSFSQSSDLQKHQRTHTGE----- 58
Query: 771 ITNEILCKICNRTFTRNYNLKKHMKT 796
C C ++F+R+ +L +H +T
Sbjct: 59 --KPYKCPECGKSFSRSDHLSRHQRT 82
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 445 KIIQCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQE-GKVPNNN 503
K +C C K+F++ +L+KH + HT P E GK LQ+ +
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRT-HTGEKPYKCPEC---GKSFSQSSDLQKHQRTHTGE 58
Query: 504 AIIQCRICSKTFTRKDSLRKHMR 526
+C C K+F+R D L +H R
Sbjct: 59 KPYKCPECGKSFSRSDHLSRHQR 81
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 157 CYVCSKVLATSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVANQLKC 215
C +C K+ + L RH L H+G K Y+C +C F R ++ H + H D SV C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSH-DGSVGKPYIC 68
Query: 216 EFCGKVFLKKSNLKAHIENNH 236
+ CGK F + +L HI+ H
Sbjct: 69 QSCGKGFSRPDHLNGHIKQVH 89
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%)
Query: 5 ISEHIKSHEYVENHMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELN 64
++ H SH + + C +C F+ ++ + H++ HD K + C+ C K FS LN
Sbjct: 23 LNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLN 82
Query: 65 KHSSAIH 71
H +H
Sbjct: 83 GHIKQVH 89
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 183 TCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHIENN 235
CEIC K F VY LN HK H E C CG F +K + H+ ++
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGE---KPYSCPVCGLRFKRKDRMSYHVRSH 58
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 20 CELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRL-KLHE 78
CE+C K+F +L RH H + K + C C RF ++ H + + K +
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGE--KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYI 67
Query: 79 CDLCGKNFSQRNNL 92
C CGK FS+ ++L
Sbjct: 68 CQSCGKGFSRPDHL 81
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 111 LNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSL 170
LN+H + H K + C +CG F +++ + H+ + G + C C K + L
Sbjct: 23 LNRHKLS-HSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHL 81
Query: 171 KRHL-LIHNGP 180
H+ +H+GP
Sbjct: 82 NGHIKQVHSGP 92
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 12/90 (13%)
Query: 713 IRCELCDKSFTRKDSLKKHNRIFHGGADP---KVMDEQMARGSADFLEV-VLNEDGEGEP 768
+ CE+C K F L +H ++ H G P V + R D + V + DG
Sbjct: 8 VACEICGKIFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKR--KDRMSYHVRSHDG---- 60
Query: 769 VSITNEILCKICNRTFTRNYNLKKHMKTVH 798
S+ +C+ C + F+R +L H+K VH
Sbjct: 61 -SVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 31/89 (34%)
Query: 508 CRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIPC 567
C +C F RKD + H+R +D +V K + C
Sbjct: 38 CPVCGLRFKRKDRMSYHVRS----HDGSVGKPYI-------------------------C 68
Query: 568 ELCYKTFTRKDSLRKHMKIFHTRRNPSAN 596
+ C K F+R D L H+K H+ PS+
Sbjct: 69 QSCGKGFSRPDHLNGHIKQVHS--GPSSG 95
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 20/74 (27%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C +C F RKD + H+R H + +I C+ C K F+R
Sbjct: 38 CPVCGLRFKRKDRMSYHVR--------SHDGSV--------GKPYI----CQSCGKGFSR 77
Query: 725 KDSLKKHNRIFHGG 738
D L H + H G
Sbjct: 78 PDHLNGHIKQVHSG 91
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 125 HECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHNGPK-YT 183
H+C++CGK FS+++ LK H+ H T ++C C A S SL +HL IH+ + +
Sbjct: 9 HKCEVCGKCFSRKDKLKTHM-RCH-TGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK 66
Query: 184 CEICAKEFTRVYELNIHKKLHEDES 208
C+IC +L +H + H +S
Sbjct: 67 CQICPYASRNSSQLTVHLRSHTGDS 91
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 18 HMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLH 77
H CE+C K F ++ L H++ H K +KC+ CD + ++ LNKH IH +
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTG--VKPYKCKTCDYAAADSSSLNKHLR-IHSDERPF 65
Query: 78 ECDLCGKNFSQRNN 91
+C +C ++ RN+
Sbjct: 66 KCQIC--PYASRNS 77
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 22/103 (21%)
Query: 77 HECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQ 136
H+C++CGK FS+++ LK H +K ++C C +
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMR--------------------CHTGVKPYKCKTCDYAAAD 48
Query: 137 RNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHNG 179
++L +HL +H +D F+C +C S L HL H G
Sbjct: 49 SSSLNKHL-RIH-SDERPFKCQICPYASRNSSQLTVHLRSHTG 89
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 22/70 (31%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C +C K F+RKD LK H+R HT +P +C+ CD +
Sbjct: 11 CEVCGKCFSRKDKLKTHMRC-HTGVKP---------------------YKCKTCDYAAAD 48
Query: 725 KDSLKKHNRI 734
SL KH RI
Sbjct: 49 SSSLNKHLRI 58
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 5 ISEHIKSHEYVENHMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELN 64
+ H++ H V+ + C+ C +L +HL+IH D+ + FKC+ C ++++L
Sbjct: 24 LKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE--RPFKCQICPYASRNSSQLT 81
Query: 65 KH 66
H
Sbjct: 82 VH 83
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 12/86 (13%)
Query: 714 RCELCDKSFTRKDSLKKHNRIFHGGADP---KVMDEQMARGSADFLEVVLNEDGEGEPVS 770
+CE+C K F+RKD LK H R H G P K D A S+ + ++ D
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRC-HTGVKPYKCKTCDYAAADSSSLNKHLRIHSD------- 61
Query: 771 ITNEILCKICNRTFTRNYNLKKHMKT 796
C+IC + L H+++
Sbjct: 62 -ERPFKCQICPYASRNSSQLTVHLRS 86
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 41/115 (35%), Gaps = 41/115 (35%)
Query: 214 KCEFCGKVFLKKSNLKAHIE--NNHLDYSCLECKAVGEEISFDXXXXXXXXXXXXXXXVI 271
KCE CGK F +K LK H+ Y C C + S
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSS------------------- 50
Query: 272 SNVYLTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYN-LKQHMKT 325
L KH+++H D+ +C+ C Y SRN + L H+++
Sbjct: 51 ------------------SLNKHLRIHSDERPFKCQIC-PYASRNSSQLTVHLRS 86
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
+C +C K F+RKD L+ HMR
Sbjct: 10 KCEVCGKCFSRKDKLKTHMR 29
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 448 QCHICLKTFAKKDSLKKHMKVFHTYISP 475
+C +C K F++KD LK HM+ HT + P
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRC-HTGVKP 36
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHTRRNP 593
CE+C K F+RKD L+ HM+ HT P
Sbjct: 11 CEVCGKCFSRKDKLKTHMRC-HTGVKP 36
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 130 CGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHNGPK-YTCEICA 188
C + FSQ +L RH+ +H T F+C +C + + S L H+ H G K + C+IC
Sbjct: 12 CDRRFSQSGSLTRHIR-IH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 189 KEFTRVYELNIHKKLH 204
++F R E H K+H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 155 FECYV--CSKVLATSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVAN 211
+ C V C + + S SL RH+ IH G K + C IC + F+R L H + H E
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE---K 61
Query: 212 QLKCEFCGKVFLKKSNLKAHIE 233
C+ CG+ F + K H +
Sbjct: 62 PFACDICGRKFARSDERKRHTK 83
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 100 NVNNRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYV 159
+ + RFS + L +H IH K +C +C +NFS+ ++L H+ T F C +
Sbjct: 11 SCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT--HTGEKPFACDI 67
Query: 160 CSKVLATSHSLKRHLLIH 177
C + A S KRH IH
Sbjct: 68 CGRKFARSDERKRHTKIH 85
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 21/93 (22%)
Query: 51 EQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAE 110
E CD+RFS + L +H IH K +C +C +NFS+ ++L
Sbjct: 10 ESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHL---------------TTH 53
Query: 111 LNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRH 143
+ H+ K CD+CG+ F++ + KRH
Sbjct: 54 IRTHTGE-----KPFACDICGRKFARSDERKRH 81
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 21 ELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECD 80
E C + F +L RH++IH + K F+C C + FS + L H H K CD
Sbjct: 10 ESCDRRFSQSGSLTRHIRIHTGQ--KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACD 66
Query: 81 LCGKNFSQRNNLKR 94
+CG+ F++ + KR
Sbjct: 67 ICGRKFARSDERKR 80
Score = 37.0 bits (84), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 5 ISEHIKSHEYVENHMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELN 64
++ HI+ H + C +C + F ++L H++ H + K F C+ C ++F+ + E
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE--KPFACDICGRKFARSDERK 79
Query: 65 KHSSAIHQRLK 75
+H+ IH R K
Sbjct: 80 RHTK-IHLRQK 89
Score = 35.8 bits (81), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 281 CFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKT 325
C + F L +H+++H QCR C + FSR+ +L H++T
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 45/132 (34%), Gaps = 56/132 (42%)
Query: 664 PCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFT 723
P CD+ F++ SL +HIRI HT +P +C +C ++F+
Sbjct: 8 PVESCDRRFSQSGSLTRHIRI-HTGQKP---------------------FQCRICMRNFS 45
Query: 724 RKDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNRT 783
R D L H R H G P C IC R
Sbjct: 46 RSDHLTTHIRT-HTGEKP---------------------------------FACDICGRK 71
Query: 784 FTRNYNLKKHMK 795
F R+ K+H K
Sbjct: 72 FARSDERKRHTK 83
Score = 33.1 bits (74), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 276 LTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMK 324
C IC + F L H++ H + C C + F+R+ K+H K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 31/112 (27%)
Query: 475 PDAIKEESGEGKPNILEVILQEGKVPNNNAIIQCRICSKTFTRKDSLRKHMRRFHIINDT 534
P A ES + + + + + ++ QCRIC + F+R D L H+R
Sbjct: 4 PYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-------- 55
Query: 535 NVKKEFTEGQINRNMLDVILKESGHEIKSRIPCELCYKTFTRKDSLRKHMKI 586
H + C++C + F R D ++H KI
Sbjct: 56 -----------------------THTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 29.3 bits (64), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 31/84 (36%)
Query: 443 ANKIIQCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNN 502
K QC IC++ F++ D L H I+ +GE KP
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTH------------IRTHTGE-KP--------------- 62
Query: 503 NAIIQCRICSKTFTRKDSLRKHMR 526
C IC + F R D ++H +
Sbjct: 63 ---FACDICGRKFARSDERKRHTK 83
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 130 CGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHNGPK-YTCEICA 188
C + FS +NL RH+ +H T F+C +C + + S L H+ H G K + C+IC
Sbjct: 12 CDRRFSDSSNLTRHIR-IH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 189 KEFTRVYELNIHKKLH 204
++F R E H K+H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 155 FECYV--CSKVLATSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVAN 211
+ C V C + + S +L RH+ IH G K + C IC + F+R L H + H E
Sbjct: 5 YACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE---K 61
Query: 212 QLKCEFCGKVFLKKSNLKAHIE 233
C+ CG+ F + K H +
Sbjct: 62 PFACDICGRKFARSDERKRHTK 83
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 21 ELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECD 80
E C + F NL RH++IH + K F+C C + FS + L H H K CD
Sbjct: 10 ESCDRRFSDSSNLTRHIRIHTGQ--KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACD 66
Query: 81 LCGKNFSQRNNLKRQA 96
+CG+ F++ + KR
Sbjct: 67 ICGRKFARSDERKRHT 82
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 100 NVNNRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYV 159
+ + RFS ++ L +H IH K +C +C +NFS+ ++L H+ T F C +
Sbjct: 11 SCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT--HTGEKPFACDI 67
Query: 160 CSKVLATSHSLKRHLLIH 177
C + A S KRH IH
Sbjct: 68 CGRKFARSDERKRHTKIH 85
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 21/93 (22%)
Query: 51 EQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAE 110
E CD+RFS ++ L +H IH K +C +C +NFS+ ++L
Sbjct: 10 ESCDRRFSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHL---------------TTH 53
Query: 111 LNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRH 143
+ H+ K CD+CG+ F++ + KRH
Sbjct: 54 IRTHTGE-----KPFACDICGRKFARSDERKRH 81
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 5 ISEHIKSHEYVENHMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELN 64
++ HI+ H + C +C + F ++L H++ H + K F C+ C ++F+ + E
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE--KPFACDICGRKFARSDERK 79
Query: 65 KHSSAIHQRLK 75
+H+ IH R K
Sbjct: 80 RHTK-IHLRQK 89
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 281 CFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKT 325
C + F +L +H+++H QCR C + FSR+ +L H++T
Sbjct: 12 CDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 44/132 (33%), Gaps = 56/132 (42%)
Query: 664 PCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFT 723
P CD+ F+ +L +HIRI HT +P +C +C ++F+
Sbjct: 8 PVESCDRRFSDSSNLTRHIRI-HTGQKP---------------------FQCRICMRNFS 45
Query: 724 RKDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNRT 783
R D L H R H G P C IC R
Sbjct: 46 RSDHLTTHIRT-HTGEKP---------------------------------FACDICGRK 71
Query: 784 FTRNYNLKKHMK 795
F R+ K+H K
Sbjct: 72 FARSDERKRHTK 83
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 276 LTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMK 324
C IC + F L H++ H + C C + F+R+ K+H K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 22/70 (31%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C +C + F+R D L HIR HT +P C++C + F R
Sbjct: 37 CRICMRNFSRSDHLTTHIRT-HTGEKP---------------------FACDICGRKFAR 74
Query: 725 KDSLKKHNRI 734
D K+H +I
Sbjct: 75 SDERKRHTKI 84
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 31/112 (27%)
Query: 475 PDAIKEESGEGKPNILEVILQEGKVPNNNAIIQCRICSKTFTRKDSLRKHMRRFHIINDT 534
P A ES + + + + + ++ QCRIC + F+R D L H+R
Sbjct: 4 PYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-------- 55
Query: 535 NVKKEFTEGQINRNMLDVILKESGHEIKSRIPCELCYKTFTRKDSLRKHMKI 586
H + C++C + F R D ++H KI
Sbjct: 56 -----------------------THTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 31/84 (36%)
Query: 443 ANKIIQCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNN 502
K QC IC++ F++ D L H I+ +GE KP
Sbjct: 31 GQKPFQCRICMRNFSRSDHLTTH------------IRTHTGE-KP--------------- 62
Query: 503 NAIIQCRICSKTFTRKDSLRKHMR 526
C IC + F R D ++H +
Sbjct: 63 ---FACDICGRKFARSDERKRHTK 83
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 52/109 (47%), Gaps = 13/109 (11%)
Query: 130 CGKNFSQRNNLKRHLEEVHRTDGMKFE-CYVCSKVLATSHSLKRHLLIHNGPK-YTC--E 185
C K F + +++HL T G + C C K S LKRH L+H G K + C E
Sbjct: 13 CTKMFRDNSAMRKHLH----THGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFE 68
Query: 186 ICAKEFTRVYELNIHKKLHEDESVANQLKCEF--CGKVFLKKSNLKAHI 232
C K F+ + L H ++H + C F C K F + +NLK+HI
Sbjct: 69 GCGKRFSLDFNLRTHVRIHTGD---RPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 105 FSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYV--CSK 162
F N+ + KH R+ H C CGK F + + LKRH + VH T F+C C K
Sbjct: 17 FRDNSAMRKHLHTHGPRV--HVCAECGKAFVESSKLKRH-QLVH-TGEKPFQCTFEGCGK 72
Query: 163 VLATSHSLKRHLLIHNGPK-YTCEI--CAKEFTRVYELNIH 200
+ +L+ H+ IH G + Y C C K+F + L H
Sbjct: 73 RFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 18 HMCELCYKVFESRENLMRHLKIHDDKESKRFKC--EQCDKRFSSNAELNKHSSAIHQRLK 75
H+C C K F L RH +H + K F+C E C KRFS + L H IH +
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGE--KPFQCTFEGCGKRFSLDFNLRTHVR-IHTGDR 91
Query: 76 LHEC--DLCGKNFSQRNNLK 93
+ C D C K F+Q NLK
Sbjct: 92 PYVCPFDGCNKKFAQSTNLK 111
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 44/105 (41%), Gaps = 16/105 (15%)
Query: 53 CDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKR-----------QANGSNV 101
C K F N+ + KH R+ H C CGK F + + LKR Q
Sbjct: 13 CTKMFRDNSAMRKHLHTHGPRV--HVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGC 70
Query: 102 NNRFSSNAELNKHSSAIHQRLKLHEC--DLCGKNFSQRNNLKRHL 144
RFS + L H IH + + C D C K F+Q NLK H+
Sbjct: 71 GKRFSLDFNLRTHVR-IHTGDRPYVCPFDGCNKKFAQSTNLKSHI 114
Score = 36.2 bits (82), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 278 CLICFKTFLTEVDLGKHMKMHMDDNQIQCRF--CNKYFSRNYNLKQHMK 324
C C K F+ L +H +H + QC F C K FS ++NL+ H++
Sbjct: 37 CAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVR 85
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 281 CFKTFLTEVDLGKHMKMHMDDNQIQCRF--CNKYFSRNYNLKQHMKTCTKNVSN 332
C K F + +L H+++H D C F CNK F+++ NLK H+ T K +N
Sbjct: 70 CGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 130 CGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHNGPK-YTCEICA 188
C + FSQ+ NL H+ +H T F+C +C + + SL H+ H G K + C+IC
Sbjct: 12 CDRRFSQKTNLDTHIR-IH-TGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICG 69
Query: 189 KEFTRVYELNIHKKLH 204
++F ++ H K+H
Sbjct: 70 RKFATLHTRTRHTKIH 85
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 100 NVNNRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYV 159
+ + RFS L+ H IH K +C +C +NFSQ+ +L H+ T F C +
Sbjct: 11 SCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRT--HTGEKPFACDI 67
Query: 160 CSKVLATSHSLKRHLLIH 177
C + AT H+ RH IH
Sbjct: 68 CGRKFATLHTRTRHTKIH 85
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 21 ELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECD 80
E C + F + NL H++IH + K F+C C + FS A LN H H K CD
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQ--KPFQCRICMRNFSQQASLNAHIRT-HTGEKPFACD 66
Query: 81 LCGKNFS 87
+CG+ F+
Sbjct: 67 ICGRKFA 73
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 21/93 (22%)
Query: 51 EQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAE 110
E CD+RFS L+ H IH K +C +C +NFSQ+ +L NA
Sbjct: 10 ESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQQASL---------------NAH 53
Query: 111 LNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRH 143
+ H+ K CD+CG+ F+ + RH
Sbjct: 54 IRTHTGE-----KPFACDICGRKFATLHTRTRH 81
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 155 FECYV--CSKVLATSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVAN 211
+ C V C + + +L H+ IH G K + C IC + F++ LN H + H E
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE---K 61
Query: 212 QLKCEFCGKVF 222
C+ CG+ F
Sbjct: 62 PFACDICGRKF 72
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 281 CFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKT 325
C + F + +L H+++H QCR C + FS+ +L H++T
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRT 56
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 5 ISEHIKSHEYVENHMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELN 64
+ HI+ H + C +C + F + +L H++ H + K F C+ C ++F++
Sbjct: 22 LDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGE--KPFACDICGRKFATLHTRT 79
Query: 65 KHSSAIHQRLK 75
+H+ IH R K
Sbjct: 80 RHTK-IHLRQK 89
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 23/82 (28%)
Query: 664 PCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFT 723
P CD+ F++K +L HIRI HT +P +C +C ++F+
Sbjct: 8 PVESCDRRFSQKTNLDTHIRI-HTGQKP---------------------FQCRICMRNFS 45
Query: 724 RKDSLKKHNRIFHGGADPKVMD 745
++ SL H R H G P D
Sbjct: 46 QQASLNAHIRT-HTGEKPFACD 66
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 276 LTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMK 324
C IC + F + L H++ H + C C + F+ + +H K
Sbjct: 35 FQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTK 83
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 130 CGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHNGPK-YTCEICA 188
C + FS+ + L RH+ +H T F+C +C + + S L H+ H G K + C+IC
Sbjct: 12 CDRRFSRSDELTRHIR-IH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 189 KEFTRVYELNIHKKLH 204
++F R E H K+H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 155 FECYV--CSKVLATSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVAN 211
+ C V C + + S L RH+ IH G K + C IC + F+R L H + H E
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE---K 61
Query: 212 QLKCEFCGKVFLKKSNLKAHIE 233
C+ CG+ F + K H +
Sbjct: 62 PFACDICGRKFARSDERKRHTK 83
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 100 NVNNRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYV 159
+ + RFS + EL +H IH K +C +C +NFS+ ++L H+ T F C +
Sbjct: 11 SCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT--HTGEKPFACDI 67
Query: 160 CSKVLATSHSLKRHLLIH 177
C + A S KRH IH
Sbjct: 68 CGRKFARSDERKRHTKIH 85
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 21/93 (22%)
Query: 51 EQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAE 110
E CD+RFS + EL +H IH K +C +C +NFS+ ++L
Sbjct: 10 ESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHL---------------TTH 53
Query: 111 LNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRH 143
+ H+ K CD+CG+ F++ + KRH
Sbjct: 54 IRTHTGE-----KPFACDICGRKFARSDERKRH 81
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 21 ELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECD 80
E C + F + L RH++IH + K F+C C + FS + L H H K CD
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQ--KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACD 66
Query: 81 LCGKNFSQRNNLKRQA 96
+CG+ F++ + KR
Sbjct: 67 ICGRKFARSDERKRHT 82
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 45/132 (34%), Gaps = 56/132 (42%)
Query: 664 PCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFT 723
P CD+ F+R D L +HIRI HT +P +C +C ++F+
Sbjct: 8 PVESCDRRFSRSDELTRHIRI-HTGQKP---------------------FQCRICMRNFS 45
Query: 724 RKDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNRT 783
R D L H R H G P C IC R
Sbjct: 46 RSDHLTTHIRT-HTGEKP---------------------------------FACDICGRK 71
Query: 784 FTRNYNLKKHMK 795
F R+ K+H K
Sbjct: 72 FARSDERKRHTK 83
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 5 ISEHIKSHEYVENHMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELN 64
++ HI+ H + C +C + F ++L H++ H + K F C+ C ++F+ + E
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE--KPFACDICGRKFARSDERK 79
Query: 65 KHSSAIHQRLK 75
+H+ IH R K
Sbjct: 80 RHTK-IHLRQK 89
Score = 36.2 bits (82), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 281 CFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKT 325
C + F +L +H+++H QCR C + FSR+ +L H++T
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 276 LTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMK 324
C IC + F L H++ H + C C + F+R+ K+H K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 31/112 (27%)
Query: 475 PDAIKEESGEGKPNILEVILQEGKVPNNNAIIQCRICSKTFTRKDSLRKHMRRFHIINDT 534
P A ES + + + + + + ++ QCRIC + F+R D L H+R
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-------- 55
Query: 535 NVKKEFTEGQINRNMLDVILKESGHEIKSRIPCELCYKTFTRKDSLRKHMKI 586
H + C++C + F R D ++H KI
Sbjct: 56 -----------------------THTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 182 YTC--EICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHIENNHLDY 239
Y C E C + F+R EL H ++H + +C C + F + +L HI H
Sbjct: 5 YACPVESCDRRFSRSDELTRHIRIHTGQ---KPFQCRICMRNFSRSDHLTTHI-RTHTGE 60
Query: 240 SCLECKAVGEEIS 252
C G + +
Sbjct: 61 KPFACDICGRKFA 73
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 130 CGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHNGPK-YTCEICA 188
C + FS+ + L RH+ +H T F+C +C + + S L H+ H G K + C+IC
Sbjct: 11 CDRRFSRSDELTRHIR-IH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 68
Query: 189 KEFTRVYELNIHKKLH 204
++F R E H K+H
Sbjct: 69 RKFARSDERKRHTKIH 84
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 155 FECYV--CSKVLATSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVAN 211
+ C V C + + S L RH+ IH G K + C IC + F+R L H + H E
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE---K 60
Query: 212 QLKCEFCGKVFLKKSNLKAHIE 233
C+ CG+ F + K H +
Sbjct: 61 PFACDICGRKFARSDERKRHTK 82
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 100 NVNNRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYV 159
+ + RFS + EL +H IH K +C +C +NFS+ ++L H+ T F C +
Sbjct: 10 SCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT--HTGEKPFACDI 66
Query: 160 CSKVLATSHSLKRHLLIH 177
C + A S KRH IH
Sbjct: 67 CGRKFARSDERKRHTKIH 84
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 21/93 (22%)
Query: 51 EQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAE 110
E CD+RFS + EL +H IH K +C +C +NFS+ ++L
Sbjct: 9 ESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHL---------------TTH 52
Query: 111 LNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRH 143
+ H+ K CD+CG+ F++ + KRH
Sbjct: 53 IRTHTGE-----KPFACDICGRKFARSDERKRH 80
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 21 ELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECD 80
E C + F + L RH++IH + K F+C C + FS + L H H K CD
Sbjct: 9 ESCDRRFSRSDELTRHIRIHTGQ--KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACD 65
Query: 81 LCGKNFSQRNNLKRQA 96
+CG+ F++ + KR
Sbjct: 66 ICGRKFARSDERKRHT 81
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 45/132 (34%), Gaps = 56/132 (42%)
Query: 664 PCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFT 723
P CD+ F+R D L +HIRI HT +P +C +C ++F+
Sbjct: 7 PVESCDRRFSRSDELTRHIRI-HTGQKP---------------------FQCRICMRNFS 44
Query: 724 RKDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNRT 783
R D L H R H G P C IC R
Sbjct: 45 RSDHLTTHIRT-HTGEKP---------------------------------FACDICGRK 70
Query: 784 FTRNYNLKKHMK 795
F R+ K+H K
Sbjct: 71 FARSDERKRHTK 82
Score = 36.2 bits (82), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 281 CFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKT 325
C + F +L +H+++H QCR C + FSR+ +L H++T
Sbjct: 11 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 55
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 5 ISEHIKSHEYVENHMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELN 64
++ HI+ H + C +C + F ++L H++ H + K F C+ C ++F+ + E
Sbjct: 21 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE--KPFACDICGRKFARSDERK 78
Query: 65 KHSSAIHQR 73
+H+ IH R
Sbjct: 79 RHTK-IHLR 86
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 276 LTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMK 324
C IC + F L H++ H + C C + F+R+ K+H K
Sbjct: 34 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 82
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 31/112 (27%)
Query: 475 PDAIKEESGEGKPNILEVILQEGKVPNNNAIIQCRICSKTFTRKDSLRKHMRRFHIINDT 534
P A ES + + + + + + ++ QCRIC + F+R D L H+R
Sbjct: 3 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-------- 54
Query: 535 NVKKEFTEGQINRNMLDVILKESGHEIKSRIPCELCYKTFTRKDSLRKHMKI 586
H + C++C + F R D ++H KI
Sbjct: 55 -----------------------THTGEKPFACDICGRKFARSDERKRHTKI 83
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 182 YTC--EICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHIENNHLDY 239
Y C E C + F+R EL H ++H + +C C + F + +L HI H
Sbjct: 4 YACPVESCDRRFSRSDELTRHIRIHTGQ---KPFQCRICMRNFSRSDHLTTHI-RTHTGE 59
Query: 240 SCLECKAVGEEIS 252
C G + +
Sbjct: 60 KPFACDICGRKFA 72
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 130 CGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHNGPK-YTCEICA 188
C + FS+ +L RH+ +H T F+C +C + + S L H+ H G K + C+IC
Sbjct: 12 CDRRFSRSADLTRHIR-IH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 189 KEFTRVYELNIHKKLH 204
++F R E H K+H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 155 FECYV--CSKVLATSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVAN 211
+ C V C + + S L RH+ IH G K + C IC + F+R L H + H E
Sbjct: 5 YACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE---K 61
Query: 212 QLKCEFCGKVFLKKSNLKAHIE 233
C+ CG+ F + K H +
Sbjct: 62 PFACDICGRKFARSDERKRHTK 83
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 100 NVNNRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYV 159
+ + RFS +A+L +H IH K +C +C +NFS+ ++L H+ T F C +
Sbjct: 11 SCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT--HTGEKPFACDI 67
Query: 160 CSKVLATSHSLKRHLLIH 177
C + A S KRH IH
Sbjct: 68 CGRKFARSDERKRHTKIH 85
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 21/93 (22%)
Query: 51 EQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAE 110
E CD+RFS +A+L +H IH K +C +C +NFS+ ++L
Sbjct: 10 ESCDRRFSRSADLTRHIR-IHTGQKPFQCRICMRNFSRSDHL---------------TTH 53
Query: 111 LNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRH 143
+ H+ K CD+CG+ F++ + KRH
Sbjct: 54 IRTHTGE-----KPFACDICGRKFARSDERKRH 81
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 21 ELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECD 80
E C + F +L RH++IH + K F+C C + FS + L H H K CD
Sbjct: 10 ESCDRRFSRSADLTRHIRIHTGQ--KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACD 66
Query: 81 LCGKNFSQRNNLKR 94
+CG+ F++ + KR
Sbjct: 67 ICGRKFARSDERKR 80
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 281 CFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKT 325
C + F DL +H+++H QCR C + FSR+ +L H++T
Sbjct: 12 CDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 5 ISEHIKSHEYVENHMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELN 64
++ HI+ H + C +C + F ++L H++ H + K F C+ C ++F+ + E
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE--KPFACDICGRKFARSDERK 79
Query: 65 KHSSAIHQRLK 75
+H+ IH R K
Sbjct: 80 RHTK-IHLRQK 89
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 44/132 (33%), Gaps = 56/132 (42%)
Query: 664 PCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFT 723
P CD+ F+R L +HIRI HT +P +C +C ++F+
Sbjct: 8 PVESCDRRFSRSADLTRHIRI-HTGQKP---------------------FQCRICMRNFS 45
Query: 724 RKDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNRT 783
R D L H R H G P C IC R
Sbjct: 46 RSDHLTTHIRT-HTGEKP---------------------------------FACDICGRK 71
Query: 784 FTRNYNLKKHMK 795
F R+ K+H K
Sbjct: 72 FARSDERKRHTK 83
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 276 LTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMK 324
C IC + F L H++ H + C C + F+R+ K+H K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 31/112 (27%)
Query: 475 PDAIKEESGEGKPNILEVILQEGKVPNNNAIIQCRICSKTFTRKDSLRKHMRRFHIINDT 534
P A ES + + + + + ++ QCRIC + F+R D L H+R
Sbjct: 4 PYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-------- 55
Query: 535 NVKKEFTEGQINRNMLDVILKESGHEIKSRIPCELCYKTFTRKDSLRKHMKI 586
H + C++C + F R D ++H KI
Sbjct: 56 -----------------------THTGEKPFACDICGRKFARSDERKRHTKI 84
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 130 CGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHNGPK-YTCEICA 188
C + FS+ + L RH+ +H T F+C +C + + S L H+ H G K + C+IC
Sbjct: 12 CDRRFSRSDELTRHIR-IH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 189 KEFTRVYELNIHKKLH 204
++F R E H K+H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 160 CSKVLATSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFC 218
C + + S L RH+ IH G K + C IC + F+R L H + H E C+ C
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE---KPFACDIC 68
Query: 219 GKVFLKKSNLKAHIE 233
G+ F + K H +
Sbjct: 69 GRKFARSDERKRHTK 83
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 100 NVNNRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYV 159
+ + RFS + EL +H IH K +C +C +NFS+ ++L H+ T F C +
Sbjct: 11 SCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT--HTGEKPFACDI 67
Query: 160 CSKVLATSHSLKRHLLIH 177
C + A S KRH IH
Sbjct: 68 CGRKFARSDERKRHTKIH 85
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 21/93 (22%)
Query: 51 EQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAE 110
E CD+RFS + EL +H IH K +C +C +NFS+ ++L
Sbjct: 10 ESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHL---------------TTH 53
Query: 111 LNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRH 143
+ H+ K CD+CG+ F++ + KRH
Sbjct: 54 IRTHTGE-----KPFACDICGRKFARSDERKRH 81
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 21 ELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECD 80
E C + F + L RH++IH + K F+C C + FS + L H H K CD
Sbjct: 10 ESCDRRFSRSDELTRHIRIHTGQ--KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACD 66
Query: 81 LCGKNFSQRNNLKRQA 96
+CG+ F++ + KR
Sbjct: 67 ICGRKFARSDERKRHT 82
Score = 38.1 bits (87), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 45/132 (34%), Gaps = 56/132 (42%)
Query: 664 PCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFT 723
P CD+ F+R D L +HIRI HT +P +C +C ++F+
Sbjct: 8 PVESCDRRFSRSDELTRHIRI-HTGQKP---------------------FQCRICMRNFS 45
Query: 724 RKDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNRT 783
R D L H R H G P C IC R
Sbjct: 46 RSDHLTTHIRT-HTGEKP---------------------------------FACDICGRK 71
Query: 784 FTRNYNLKKHMK 795
F R+ K+H K
Sbjct: 72 FARSDERKRHTK 83
Score = 36.2 bits (82), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 281 CFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKT 325
C + F +L +H+++H QCR C + FSR+ +L H++T
Sbjct: 12 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 5 ISEHIKSHEYVENHMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELN 64
++ HI+ H + C +C + F ++L H++ H + K F C+ C ++F+ + E
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE--KPFACDICGRKFARSDERK 79
Query: 65 KHSSAIHQR 73
+H+ IH R
Sbjct: 80 RHTK-IHLR 87
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 276 LTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMK 324
C IC + F L H++ H + C C + F+R+ K+H K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 31/112 (27%)
Query: 475 PDAIKEESGEGKPNILEVILQEGKVPNNNAIIQCRICSKTFTRKDSLRKHMRRFHIINDT 534
P A ES + + + + + + ++ QCRIC + F+R D L H+R
Sbjct: 4 PYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-------- 55
Query: 535 NVKKEFTEGQINRNMLDVILKESGHEIKSRIPCELCYKTFTRKDSLRKHMKI 586
H + C++C + F R D ++H KI
Sbjct: 56 -----------------------THTGEKPFACDICGRKFARSDERKRHTKI 84
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 130 CGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHNGPK-YTCEICA 188
C + FSQ+ NL H+ +H T F+C +C + + L +H+ H G K + C+IC
Sbjct: 12 CDRRFSQKTNLDTHIR-IH-TGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICG 69
Query: 189 KEFTRVYELNIHKKLH 204
++F ++ + H K+H
Sbjct: 70 RKFATLHTRDRHTKIH 85
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 100 NVNNRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYV 159
+ + RFS L+ H IH K +C +C +NFSQ L +H+ T F C +
Sbjct: 11 SCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRT--HTGEKPFACDI 67
Query: 160 CSKVLATSHSLKRHLLIH 177
C + AT H+ RH IH
Sbjct: 68 CGRKFATLHTRDRHTKIH 85
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 21 ELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECD 80
E C + F + NL H++IH + K F+C C + FS + LN+H H K CD
Sbjct: 10 ESCDRRFSQKTNLDTHIRIHTGQ--KPFQCRICMRNFSQHTGLNQHIRT-HTGEKPFACD 66
Query: 81 LCGKNFS 87
+CG+ F+
Sbjct: 67 ICGRKFA 73
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 21/93 (22%)
Query: 51 EQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAE 110
E CD+RFS L+ H IH K +C +C +NFSQ L N
Sbjct: 10 ESCDRRFSQKTNLDTHIR-IHTGQKPFQCRICMRNFSQHTGL---------------NQH 53
Query: 111 LNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRH 143
+ H+ K CD+CG+ F+ + RH
Sbjct: 54 IRTHTGE-----KPFACDICGRKFATLHTRDRH 81
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 155 FECYV--CSKVLATSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVAN 211
+ C V C + + +L H+ IH G K + C IC + F++ LN H + H E
Sbjct: 5 YACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE---K 61
Query: 212 QLKCEFCGKVF 222
C+ CG+ F
Sbjct: 62 PFACDICGRKF 72
Score = 36.6 bits (83), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 281 CFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKT 325
C + F + +L H+++H QCR C + FS++ L QH++T
Sbjct: 12 CDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRT 56
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 5 ISEHIKSHEYVENHMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELN 64
+ HI+ H + C +C + F L +H++ H + K F C+ C ++F++ +
Sbjct: 22 LDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGE--KPFACDICGRKFATLHTRD 79
Query: 65 KHSSAIHQRLK 75
+H+ IH R K
Sbjct: 80 RHTK-IHLRQK 89
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 23/82 (28%)
Query: 664 PCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFT 723
P CD+ F++K +L HIRI HT +P +C +C ++F+
Sbjct: 8 PVESCDRRFSQKTNLDTHIRI-HTGQKP---------------------FQCRICMRNFS 45
Query: 724 RKDSLKKHNRIFHGGADPKVMD 745
+ L +H R H G P D
Sbjct: 46 QHTGLNQHIRT-HTGEKPFACD 66
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 276 LTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMK 324
C IC + F L +H++ H + C C + F+ + +H K
Sbjct: 35 FQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTK 83
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 100 NVNNRFSSNAELNKHSSAIHQRLKLHECDL--CGKNFSQRNNLKRHLEEVHRTDGMK-FE 156
N R+ + L HS H K ++CD C + FS+ + LKRH R G+K F+
Sbjct: 13 GCNKRYFKLSHLQMHSRK-HTGEKPYQCDFKDCERRFSRSDQLKRHQR---RHTGVKPFQ 68
Query: 157 CYVCSKVLATSHSLKRHLLIHNGPK-YTCEI--CAKEFTRVYELNIHKKLH 204
C C + + S LK H H G K ++C C K+F R EL H +H
Sbjct: 69 CKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 160 CSKVLATSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEF- 217
C + + S LKRH H G K + C+ C ++F+R L H + H E C +
Sbjct: 44 CERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKP---FSCRWP 100
Query: 218 -CGKVFLKKSNLKAH 231
C K F + L H
Sbjct: 101 SCQKKFARSDELVRH 115
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 23/74 (31%)
Query: 668 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDS 727
C++ F+R D LK+H R +HT V +C+ C + F+R D
Sbjct: 44 CERRFSRSDQLKRHQR--------RHTGVKP--------------FQCKTCQRKFSRSDH 81
Query: 728 LKKHNRIFHGGADP 741
LK H R H G P
Sbjct: 82 LKTHTRT-HTGEKP 94
Score = 33.1 bits (74), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 34 MRHLKIHDDKES--KRFKCE--QCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQR 89
+ HL++H K + K ++C+ C++RFS + +L +H H +K +C C + FS+
Sbjct: 21 LSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRR-HTGVKPFQCKTCQRKFSRS 79
Query: 90 NNLKRQANGSNVNNRFS 106
++LK FS
Sbjct: 80 DHLKTHTRTHTGEKPFS 96
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 281 CFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
C + F L +H + H QC+ C + FSR+ +LK H +T T
Sbjct: 44 CERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHT 90
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 130 CGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHNGPK-YTCEICA 188
C + FS+ L RH+ +H T F+C +C + + S L H+ H G K + C+IC
Sbjct: 12 CDRRFSRSAELTRHIR-IH-TGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICG 69
Query: 189 KEFTRVYELNIHKKLH 204
++F R E H K+H
Sbjct: 70 RKFARSDERKRHTKIH 85
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 100 NVNNRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYV 159
+ + RFS +AEL +H IH K +C +C +NFS+ ++L H+ T F C +
Sbjct: 11 SCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRT--HTGEKPFACDI 67
Query: 160 CSKVLATSHSLKRHLLIH 177
C + A S KRH IH
Sbjct: 68 CGRKFARSDERKRHTKIH 85
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 21/93 (22%)
Query: 51 EQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAE 110
E CD+RFS +AEL +H IH K +C +C +NFS+ ++L
Sbjct: 10 ESCDRRFSRSAELTRHIR-IHTGQKPFQCRICMRNFSRSDHL---------------TTH 53
Query: 111 LNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRH 143
+ H+ K CD+CG+ F++ + KRH
Sbjct: 54 IRTHTGE-----KPFACDICGRKFARSDERKRH 81
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Query: 155 FECYV--CSKVLATSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVAN 211
+ C V C + + S L RH+ IH G K + C IC + F+R L H + H E
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE---K 61
Query: 212 QLKCEFCGKVFLKKSNLKAHIE 233
C+ CG+ F + K H +
Sbjct: 62 PFACDICGRKFARSDERKRHTK 83
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 21 ELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECD 80
E C + F L RH++IH + K F+C C + FS + L H H K CD
Sbjct: 10 ESCDRRFSRSAELTRHIRIHTGQ--KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACD 66
Query: 81 LCGKNFSQRNNLKR 94
+CG+ F++ + KR
Sbjct: 67 ICGRKFARSDERKR 80
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 281 CFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKT 325
C + F +L +H+++H QCR C + FSR+ +L H++T
Sbjct: 12 CDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRT 56
Score = 36.6 bits (83), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 5 ISEHIKSHEYVENHMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELN 64
++ HI+ H + C +C + F ++L H++ H + K F C+ C ++F+ + E
Sbjct: 22 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE--KPFACDICGRKFARSDERK 79
Query: 65 KHSSAIHQRLK 75
+H+ IH R K
Sbjct: 80 RHTK-IHLRQK 89
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 44/132 (33%), Gaps = 56/132 (42%)
Query: 664 PCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFT 723
P CD+ F+R L +HIRI HT +P +C +C ++F+
Sbjct: 8 PVESCDRRFSRSAELTRHIRI-HTGQKP---------------------FQCRICMRNFS 45
Query: 724 RKDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNRT 783
R D L H R H G P C IC R
Sbjct: 46 RSDHLTTHIRT-HTGEKP---------------------------------FACDICGRK 71
Query: 784 FTRNYNLKKHMK 795
F R+ K+H K
Sbjct: 72 FARSDERKRHTK 83
Score = 33.1 bits (74), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 276 LTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMK 324
C IC + F L H++ H + C C + F+R+ K+H K
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTK 83
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 40/112 (35%), Gaps = 31/112 (27%)
Query: 475 PDAIKEESGEGKPNILEVILQEGKVPNNNAIIQCRICSKTFTRKDSLRKHMRRFHIINDT 534
P A ES + + + + + ++ QCRIC + F+R D L H+R
Sbjct: 4 PYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR-------- 55
Query: 535 NVKKEFTEGQINRNMLDVILKESGHEIKSRIPCELCYKTFTRKDSLRKHMKI 586
H + C++C + F R D ++H KI
Sbjct: 56 -----------------------THTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 182 YTCEI--CAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHIENNHLDY 239
Y C + C + F+R EL H ++H + +C C + F + +L HI H
Sbjct: 5 YACPVESCDRRFSRSAELTRHIRIHTGQ---KPFQCRICMRNFSRSDHLTTHI-RTHTGE 60
Query: 240 SCLECKAVGEEIS 252
C G + +
Sbjct: 61 KPFACDICGRKFA 73
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 56/140 (40%), Gaps = 35/140 (25%)
Query: 184 CEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHIENNHLDYSCLE 243
C C K+F Y L +H + H E +C CGK + +K NL H N ++ S
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGE---KPFECPKCGKCYFRKENLLEHEARNCMNRS--- 63
Query: 244 CKAVGEEISFDXXXXXXXXXXXXXXXVISNVYLTCLICFKTFLTEVDLGKHMKMHMDDNQ 303
E++ TC +C +TF ++L HM H +
Sbjct: 64 -----EQV------------------------FTCSVCQETFRRRMELRLHMVSHTGEMP 94
Query: 304 IQCRFCNKYFSRNYNLKQHM 323
+C C++ F + +L+ HM
Sbjct: 95 YKCSSCSQQFMQKKDLQSHM 114
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 9/111 (8%)
Query: 126 ECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSL----KRHLLIHNGPK 181
EC C K F + LK H + T FEC C K +L R+ + +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRK--HTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQV 66
Query: 182 YTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHI 232
+TC +C + F R EL +H H E KC C + F++K +L++H+
Sbjct: 67 FTCSVCQETFRRRMELRLHMVSHTGEM---PYKCSSCSQQFMQKKDLQSHM 114
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 25/137 (18%)
Query: 78 ECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQR 137
EC C K F + LK V+NR KH+ K EC CGK + ++
Sbjct: 9 ECPTCHKKFLSKYYLK-------VHNR--------KHTGE-----KPFECPKCGKCYFRK 48
Query: 138 NNLKRHLEE--VHRTDGMKFECYVCSKVLATSHSLKRHLLIHNGP-KYTCEICAKEFTRV 194
NL H ++R++ + F C VC + L+ H++ H G Y C C+++F +
Sbjct: 49 ENLLEHEARNCMNRSEQV-FTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQK 107
Query: 195 YELNIHK-KLHEDESVA 210
+L H KLH S
Sbjct: 108 KDLQSHMIKLHSGPSSG 124
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 27/63 (42%)
Query: 276 LTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCTKNVSNGIL 335
+ C C K FL++ L H + H + +C C K + R NL +H N S +
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 336 NCD 338
C
Sbjct: 68 TCS 70
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 713 IRCELCDKSFTRKDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSIT 772
+ C C K F K LK HNR H G P E G F + L E ++ +
Sbjct: 8 VECPTCHKKFLSKYYLKVHNRK-HTGEKP---FECPKCGKCYFRKENLLEHEARNCMNRS 63
Query: 773 NEIL-CKICNRTFTRNYNLKKHM 794
++ C +C TF R L+ HM
Sbjct: 64 EQVFTCSVCQETFRRRMELRLHM 86
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Query: 43 KESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNL 92
+E +R+KC++C K FS +++L+KH H K ++CD CGK F QR++L
Sbjct: 14 RERRRYKCDECGKSFSHSSDLSKH-RRTHTGEKPYKCDECGKAFIQRSHL 62
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 181 KYTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAH 231
+Y C+ C K F+ +L+ H++ H E KC+ CGK F+++S+L H
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGE---KPYKCDECGKAFIQRSHLIGH 65
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 154 KFECYVCSKVLATSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
+++C C K + S L +H H G K Y C+ C K F + L H ++H
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 21/78 (26%)
Query: 75 KLHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRLKLHECDLCGKNF 134
+ ++CD CGK+FS +++L+KH H K ++CD CGK F
Sbjct: 17 RRYKCDECGKSFSH-------------------SSDLSKHR-RTHTGEKPYKCDECGKAF 56
Query: 135 SQRNNLKRHLEEVHRTDG 152
QR++L H VH G
Sbjct: 57 IQRSHLIGH-HRVHTGSG 73
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 23/80 (28%)
Query: 662 RIPCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKS 721
R C C K+F+ L KH R HT +P +C+ C K+
Sbjct: 18 RYKCDECGKSFSHSSDLSKHRRT-HTGEKP---------------------YKCDECGKA 55
Query: 722 FTRKDSLKKHNRIFHGGADP 741
F ++ L H+R+ H G+ P
Sbjct: 56 FIQRSHLIGHHRV-HTGSGP 74
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 123 KLHECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHNG 179
+ ++CD CGK+FS ++L +H T ++C C K L H +H G
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRT--HTGEKPYKCDECGKAFIQRSHLIGHHRVHTG 71
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 23/50 (46%)
Query: 278 CLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
C C K+F DL KH + H + +C C K F + +L H + T
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 127 CDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHNGPK-YTCE 185
C CG++F++ NL H E H TD + C +C K L+ H IH+ K + C+
Sbjct: 20 CKFCGRHFTKSYNLLIH-ERTH-TDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ 77
Query: 186 ICAKEFTRVYELNIHKKLHEDES 208
C K F + L +HK LH S
Sbjct: 78 ECGKGFCQSRTLAVHKTLHMQTS 100
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVANQL 213
F C C + S++L H H + YTC+IC K F R L H+ +H E
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKE---KPF 74
Query: 214 KCEFCGKVFLKKSNLKAH 231
KC+ CGK F + L H
Sbjct: 75 KCQECGKGFCQSRTLAVH 92
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 182 YTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAH--IENNHLDY 239
+ C+ C + FT+ Y L IH++ H DE C+ C K F ++ +L+ H I + +
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDE---RPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 240 SCLEC 244
C EC
Sbjct: 75 KCQEC 79
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 19 MCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHE 78
+C+ C + F NL+ H + H D+ + C+ C K F L H IH + K +
Sbjct: 19 ICKFCGRHFTKSYNLLIHERTHTDERP--YTCDICHKAFRRQDHLRDH-RYIHSKEKPFK 75
Query: 79 CDLCGKNFSQRNNL 92
C CGK F Q L
Sbjct: 76 CQECGKGFCQSRTL 89
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 8 HIKSHEYVENHMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHS 67
H ++H + C++C+K F +++L H IH + K FKC++C K F + L H
Sbjct: 36 HERTHTDERPYTCDICHKAFRRQDHLRDHRYIHS--KEKPFKCQECGKGFCQSRTLAVHK 93
Query: 68 S 68
+
Sbjct: 94 T 94
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 26/112 (23%)
Query: 43 KESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRQANGSNVN 102
K K F C+ C + F+ + L H H + + CD+C K F ++++L+ +
Sbjct: 13 KTKKEFICKFCGRHFTKSYNLLIHERT-HTDERPYTCDICHKAFRRQDHLR--------D 63
Query: 103 NRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRHLEEVHRTDGMK 154
+R+ IH + K +C CGK F Q L VH+T M+
Sbjct: 64 HRY------------IHSKEKPFKCQECGKGFCQSRTL-----AVHKTLHMQ 98
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 768 PVSITNEILCKICNRTFTRNYNLKKHMKTVHKIDDNEPY 806
P E +CK C R FT++YNL H +T D PY
Sbjct: 11 PSKTKKEFICKFCGRHFTKSYNLLIHERTH---TDERPY 46
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 534 TNVKKEFTEGQINRNM---LDVILKESGHEIKSRIPCELCYKTFTRKDSLRKHMKIFHTR 590
+ KKEF R+ ++++ E H + C++C+K F R+D LR H I H++
Sbjct: 12 SKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYI-HSK 70
Query: 591 RNP 593
P
Sbjct: 71 EKP 73
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 36/108 (33%), Gaps = 35/108 (32%)
Query: 215 CEFCGKVFLKKSNLKAHIENNHLDYSCLECKAVGEEISFDXXXXXXXXXXXXXXXVISNV 274
C+FCG+ F K NL H E H D
Sbjct: 20 CKFCGRHFTKSYNLLIH-ERTHTD----------------------------------ER 44
Query: 275 YLTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQH 322
TC IC K F + L H +H + +C+ C K F ++ L H
Sbjct: 45 PYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVH 92
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 276 LTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQH 322
C C + F +L H + H D+ C C+K F R +L+ H
Sbjct: 18 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDH 64
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 6/71 (8%)
Query: 123 KLHECDLCGKNFSQRNNLKRHLEEVHRTDGMK-FECYVCSKVLATSHSLKRHLLIHNGPK 181
KL+ C CGK+F+ ++ RH+ +H G++ + C VC K H L H+ IH G K
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHMS-MHL--GLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 182 -YTCEICAKEF 191
Y C ICAK F
Sbjct: 65 PYECNICAKRF 75
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 22/99 (22%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRQANGSNVNNRF 105
K + C QC K F+ ++ ++H S +H L+ + C +CGK F +++L
Sbjct: 9 KLYPC-QCGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMK-------- 58
Query: 106 SSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRHL 144
IH +K +EC++C K F R++ RH+
Sbjct: 59 ------------IHTGIKPYECNICAKRFMWRDSFHRHV 85
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 105 FSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRHLEEVHRTDGMK-FECYVCSKV 163
F+ ++ ++H S +H L+ + C +CGK F +++L H+ ++H G+K +EC +C+K
Sbjct: 19 FTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHM-KIH--TGIKPYECNICAKR 74
Query: 164 LATSHSLKRHL 174
S RH+
Sbjct: 75 FMWRDSFHRHV 85
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 160 CSKVLATSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFC 218
C K RH+ +H G + Y C +C K+F + L H K+H +C C
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG---IKPYECNIC 71
Query: 219 GKVFLKKSNLKAHIEN 234
K F+ + + H+ +
Sbjct: 72 AKRFMWRDSFHRHVTS 87
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 8 HIKSHEYVENHMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKH 66
H+ H + + C +C K F+ + +L+ H+KIH K ++C C KRF ++H
Sbjct: 28 HMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTG--IKPYECNICAKRFMWRDSFHRH 84
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 278 CLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCTKN 329
C +C K F + L HMK+H +C C K F + +H+ +CTK+
Sbjct: 40 CGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTSCTKS 91
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 281 CFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMK 324
C K+F + +HM MH+ C C K F ++L HMK
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMK 58
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 43.1 bits (100), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 18 HMCEL--CYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLK 75
H C+ C KV+ +L HL+ H ++ + E CD RF+ + EL +H H K
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK-HTGAK 74
Query: 76 LHECDLCGKNFSQRNNL 92
+C +C ++FS+ ++L
Sbjct: 75 PFQCGVCNRSFSRSDHL 91
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 120 QRLKLHECDL--CGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIH 177
++ ++H CD C K +++ ++LK HL K C A S L RH H
Sbjct: 11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH 70
Query: 178 NGPK-YTCEICAKEFTRVYELNIHKKLHED 206
G K + C +C + F+R L +H K H++
Sbjct: 71 TGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 38.5 bits (88), Expect = 0.017, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Query: 160 CSKVLATSHSLKRHLLIHNGPK-YTC--EICAKEFTRVYELNIHKKLHEDESVANQLKCE 216
C+KV S LK HL H G K Y C E C F R EL H + H + A +C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKH---TGAKPFQCG 79
Query: 217 FCGKVFLKKSNLKAHIENNH 236
C + F + +L H++ +
Sbjct: 80 VCNRSFSRSDHLALHMKRHQ 99
Score = 34.3 bits (77), Expect = 0.31, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 44/128 (34%), Gaps = 54/128 (42%)
Query: 668 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDS 727
C K +T+ LK H+R HT +P + E CD F R D
Sbjct: 23 CTKVYTKSSHLKAHLRT-HTGEKPY-------------------KCTWEGCDWRFARSDE 62
Query: 728 LKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNRTFTRN 787
L +H R H GA P C +CNR+F+R+
Sbjct: 63 LTRHYRK-HTGAKP---------------------------------FQCGVCNRSFSRS 88
Query: 788 YNLKKHMK 795
+L HMK
Sbjct: 89 DHLALHMK 96
Score = 33.5 bits (75), Expect = 0.57, Method: Composition-based stats.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 452 CLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQCRIC 511
C K + K LK H++ HT P E + + + + + + QC +C
Sbjct: 23 CTKVYTKSSHLKAHLRT-HTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVC 81
Query: 512 SKTFTRKDSLRKHMRR 527
+++F+R D L HM+R
Sbjct: 82 NRSFSRSDHLALHMKR 97
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 281 CFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMK 324
C F +L +H + H QC CN+ FSR+ +L HMK
Sbjct: 53 CDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMK 96
Score = 29.6 bits (65), Expect = 6.6, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 14/87 (16%)
Query: 72 QRLKLHECDL--CGKNFSQRNNLK---RQANGSN--------VNNRFSSNAELNKHSSAI 118
++ ++H CD C K +++ ++LK R G + RF+ + EL +H
Sbjct: 11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK- 69
Query: 119 HQRLKLHECDLCGKNFSQRNNLKRHLE 145
H K +C +C ++FS+ ++L H++
Sbjct: 70 HTGAKPFQCGVCNRSFSRSDHLALHMK 96
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 184 CEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHIENNH 236
CEIC + LN H++ H + A + CEFCGK F K ++ AH +H
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 20 CELCYKVFESRENLMRHLKIHDDKESK-RFKCEQCDKRFSSNAELNKHSSAIHQRLKL 76
CE+C + +L H + H + + RF CE C KRF + H S H L L
Sbjct: 10 CEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 72/168 (42%), Gaps = 27/168 (16%)
Query: 23 CYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLC 82
C + L HL H ++ K E C+K F+S L +H S H K CD
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRH-SLTHTGEKNFTCD-- 76
Query: 83 GKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQ-RLKLHECDL--CGKNFSQRNN 139
++G ++ RF++ A + KH + H ++ ++ C CGK F + N
Sbjct: 77 -------------SDGCDL--RFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQ 121
Query: 140 LKRHLEEVHRTDGMKFEC--YVCSKVLATSHSLKRHLLIHNGPKYTCE 185
LK H + T + +EC C K + LKRH +H G Y C+
Sbjct: 122 LKVH--QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG--YPCK 165
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 63/135 (46%), Gaps = 30/135 (22%)
Query: 21 ELCYKVFESRENLMRHLKIHDDKESKRFKCEQ--CDKRFSSNAELNKHSSAIHQ-RLKLH 77
E C K F S +L RH H + K F C+ CD RF++ A + KH + H ++ ++
Sbjct: 48 EGCEKGFTSLHHLTRHSLTHTGE--KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVY 105
Query: 78 ECDL--CGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRLKLHEC--DLCGKN 133
C CGK F + N LK ++FS +L +EC + C K
Sbjct: 106 VCHFENCGKAFKKHNQLKV--------HQFSHTQQLP------------YECPHEGCDKR 145
Query: 134 FSQRNNLKRHLEEVH 148
FS + LKRH E+VH
Sbjct: 146 FSLPSRLKRH-EKVH 159
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 48/120 (40%), Gaps = 10/120 (8%)
Query: 130 CGKNFSQRNNLKRHLEEVHRTDGMKFECY--VCSKVLATSHSLKRHLLIHNGPK-YTCEI 186
CG +++ L+ HL T F C C K + H L RH L H G K +TC+
Sbjct: 20 CGAAYNKNWKLQAHL--CKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDS 77
Query: 187 --CAKEFTRVYELNIH-KKLHEDESVANQLKCEFCGKVFLKKSNLKAH--IENNHLDYSC 241
C FT + H + H + E CGK F K + LK H L Y C
Sbjct: 78 DGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYEC 137
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 53/144 (36%), Gaps = 14/144 (9%)
Query: 452 CLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQCRI- 510
C + K L+ H+ HT P KEE E L + + C
Sbjct: 20 CGAAYNKNWKLQAHL-CKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSD 78
Query: 511 -CSKTFTRKDSLRKHMRRFH-------IINDTNVKKEFTEGQINRNMLDVILKESGHEIK 562
C FT K +++KH RFH + + N K F + N L V ++
Sbjct: 79 GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKK----HNQLKVHQFSHTQQLP 134
Query: 563 SRIPCELCYKTFTRKDSLRKHMKI 586
P E C K F+ L++H K+
Sbjct: 135 YECPHEGCDKRFSLPSRLKRHEKV 158
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 184 CEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHIENNH 236
C C K F Y LNIH + H E KCEFC +K++L+ H+E +H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGE---KPYKCEFCEYAAAQKTSLRYHLERHH 56
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 3/88 (3%)
Query: 120 QRLKLHECDL--CGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIH 177
+R H CD CGK +++ ++LK HL + C A S L RH H
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKH 60
Query: 178 NGPK-YTCEICAKEFTRVYELNIHKKLH 204
G + + C+ C + F+R L +H K H
Sbjct: 61 TGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 34.7 bits (78), Expect = 0.26, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 160 CSKVLATSHSLKRHLLIHNGPK-YTCEI--CAKEFTRVYELNIHKKLHEDESVANQLKCE 216
C K S LK HL H G K Y C+ C +F R EL H + H +C+
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH---RPFQCQ 69
Query: 217 FCGKVFLKKSNLKAHIENN 235
C + F + +L H++ +
Sbjct: 70 KCDRAFSRSDHLALHMKRH 88
Score = 31.6 bits (70), Expect = 1.9, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 668 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIR---------CELC 718
C KT+T+ LK H+R HT +P H + + R C+ C
Sbjct: 13 CGKTYTKSSHLKAHLRT-HTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 71
Query: 719 DKSFTRKDSLKKH 731
D++F+R D L H
Sbjct: 72 DRAFSRSDHLALH 84
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 281 CFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMK 324
C F +L +H + H QC+ C++ FSR+ +L HMK
Sbjct: 43 CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 86
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 18 HMCEL--CYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLK 75
H C+ C K + +L HL+ H ++ + C +F+ + EL +H H +
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHR 64
Query: 76 LHECDLCGKNFSQRNNL 92
+C C + FS+ ++L
Sbjct: 65 PFQCQKCDRAFSRSDHL 81
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 452 CLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQCRIC 511
C KT+ K LK H++ HT P + K + + + + + QC+ C
Sbjct: 13 CGKTYTKSSHLKAHLRT-HTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 71
Query: 512 SKTFTRKDSLRKHMRR 527
+ F+R D L HM+R
Sbjct: 72 DRAFSRSDHLALHMKR 87
Score = 30.0 bits (66), Expect = 5.7, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 5 ISEHIKSHEYVENHMCEL--CYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAE 62
+ H+++H + + C+ C F + L RH + H + F+C++CD+ FS +
Sbjct: 23 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH--RPFQCQKCDRAFSRSDH 80
Query: 63 LNKH 66
L H
Sbjct: 81 LALH 84
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Query: 121 RLKLHECDL--CGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHN 178
R H CD CGK +++ ++LK HL + C A S L RH H
Sbjct: 3 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 62
Query: 179 GPK-YTCEICAKEFTRVYELNIHKKLH 204
G + + C+ C + F+R L +H K H
Sbjct: 63 GHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 160 CSKVLATSHSLKRHLLIHNGPK-YTCEI--CAKEFTRVYELNIHKKLHEDESVANQLKCE 216
C K S LK HL H G K Y C+ C +F R EL H + H +C+
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH---RPFQCQ 70
Query: 217 FCGKVFLKKSNLKAHIENN 235
C + F + +L H++ +
Sbjct: 71 KCDRAFSRSDHLALHMKRH 89
Score = 32.0 bits (71), Expect = 1.4, Method: Composition-based stats.
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 668 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIR---------CELC 718
C KT+T+ LK H+R HT +P H + + R C+ C
Sbjct: 14 CGKTYTKSSHLKAHLRT-HTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 72
Query: 719 DKSFTRKDSLKKH 731
D++F+R D L H
Sbjct: 73 DRAFSRSDHLALH 85
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 38/107 (35%), Gaps = 33/107 (30%)
Query: 218 CGKVFLKKSNLKAHIENNHLDYSCLECKAVGEEISFDXXXXXXXXXXXXXXXVISNVYLT 277
CGK + K S+LKAH+ H C G
Sbjct: 14 CGKTYTKSSHLKAHLRT-HTGEKPYHCDWDG----------------------------- 43
Query: 278 CLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMK 324
C F +L +H + H QC+ C++ FSR+ +L HMK
Sbjct: 44 ---CGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMK 87
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 18 HMCEL--CYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLK 75
H C+ C K + +L HL+ H ++ + C +F+ + EL +H H +
Sbjct: 7 HTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRK-HTGHR 65
Query: 76 LHECDLCGKNFSQRNNL 92
+C C + FS+ ++L
Sbjct: 66 PFQCQKCDRAFSRSDHL 82
Score = 30.8 bits (68), Expect = 3.0, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 452 CLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQCRIC 511
C KT+ K LK H++ HT P + K + + + + + QC+ C
Sbjct: 14 CGKTYTKSSHLKAHLRT-HTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKC 72
Query: 512 SKTFTRKDSLRKHMRR 527
+ F+R D L HM+R
Sbjct: 73 DRAFSRSDHLALHMKR 88
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 5 ISEHIKSHEYVENHMCEL--CYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAE 62
+ H+++H + + C+ C F + L RH + H + F+C++CD+ FS +
Sbjct: 24 LKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH--RPFQCQKCDRAFSRSDH 81
Query: 63 LNKH 66
L H
Sbjct: 82 LALH 85
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 150 TDG-MKFECYVCSKVLATSHSLKRHLLIHNG-PKYTCEICAKEFTRVYELNIHKKLHEDE 207
DG + + C VC + SL+RH IH+ KY C C K F H+ H E
Sbjct: 17 VDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGE 76
Query: 208 SVANQLKCEFCGKVFLKKSNLKAHIENNH 236
+ +C CGK F+ + +HI++ H
Sbjct: 77 ---RRYQCLACGKSFINYQFMSSHIKSVH 102
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 270 VISNVYLTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYF 313
V VY C++C ++++ L +H +H + + CR+C K F
Sbjct: 17 VDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVF 60
Score = 32.7 bits (73), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 18 HMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLH 77
++C +C + + +L RH IH K++ C C+K F KH H + +
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHS--WEKKYPCRYCEKVFPLAEYRTKHEIH-HTGERRY 79
Query: 78 ECDLCGKNF 86
+C CGK+F
Sbjct: 80 QCLACGKSF 88
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 5 ISEHIKSHEYVENHMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELN 64
+ H H + + + C C KVF E +H +IH E +R++C C K F + ++
Sbjct: 38 LRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKH-EIHHTGE-RRYQCLACGKSFINYQFMS 95
Query: 65 KHSSAIHQR--------LKLHEC 79
H ++H + +LH C
Sbjct: 96 SHIKSVHSQDPSGDSKLYRLHPC 118
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 127 CDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHNGP-KYTCE 185
C +C +++ +L+RH +H + K+ C C KV + +H + H G +Y C
Sbjct: 25 CIVCKRSYVCLTSLRRHFN-IHSWEK-KYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCL 82
Query: 186 ICAKEF 191
C K F
Sbjct: 83 ACGKSF 88
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 4/98 (4%)
Query: 2 QMIISEHIKSHEYVENHMC--ELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSS 59
Q ++ H++ H + H C E C K + ENL HL+ H ++ + E C K FS+
Sbjct: 52 QYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSN 111
Query: 60 NAELNKHSSAIHQRLKLHECDL--CGKNFSQRNNLKRQ 95
++ KH + H K + C L C K ++ ++L++
Sbjct: 112 ASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKH 149
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 716 ELCDKSFTRKDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEI 775
E C KS++R ++LK H R H G P + + + S F + S
Sbjct: 73 EGCRKSYSRLENLKTHLRS-HTGEKPYMCEHEGC--SKAFSNASDRAKHQNRTHSNEKPY 129
Query: 776 LCKI--CNRTFTRNYNLKKHMKTVH 798
+CK+ C + +T +L+KH+KTVH
Sbjct: 130 VCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 15/87 (17%)
Query: 665 CTL--CDKTFTRKDSLKKHIRIFHTQNQP---QHTNVIEVALGARANAAFIDRIR----- 714
CT C K+++R ++LK H+R HT +P +H + A A +R
Sbjct: 70 CTFEGCRKSYSRLENLKTHLRS-HTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP 128
Query: 715 --CEL--CDKSFTRKDSLKKHNRIFHG 737
C+L C K +T SL+KH + HG
Sbjct: 129 YVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 5 ISEHIKSHEYVENHMCE--LCYKVFESRENLMRHL-KIHDDKESKRFKCEQCDKRFSSNA 61
+ H++SH + +MCE C K F + + +H + H +++ K C KR++ +
Sbjct: 85 LKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPS 144
Query: 62 ELNKHSSAIH 71
L KH +H
Sbjct: 145 SLRKHVKTVH 154
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 452 CLKTFAKKDSLKKHMKVFHTYISPDAIKEES-GEGKPNILEVILQEGKVPNNNAIIQCRI 510
C K++++ ++LK H++ HT P + E + N + + + +N C++
Sbjct: 75 CRKSYSRLENLKTHLRS-HTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKL 133
Query: 511 --CSKTFTRKDSLRKHMRRFH 529
C+K +T SLRKH++ H
Sbjct: 134 PGCTKRYTDPSSLRKHVKTVH 154
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 51/130 (39%), Gaps = 10/130 (7%)
Query: 128 DLCGKNFSQRNNLKRHLEEVH-RTDGMKFECYV--CSKVL---ATSHSLKRHLLIHNGPK 181
D C + F + L H+ H + +F C+ CS+ L + L H+ H G K
Sbjct: 7 DGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEK 66
Query: 182 Y---TCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHIENNHLD 238
T E C K ++R+ L H + H E + E C K F S+ H H +
Sbjct: 67 PHKCTFEGCRKSYSRLENLKTHLRSHTGEK-PYMCEHEGCSKAFSNASDRAKHQNRTHSN 125
Query: 239 YSCLECKAVG 248
CK G
Sbjct: 126 EKPYVCKLPG 135
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 22/74 (29%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C +C + F R++ LK+H R HT +P C LC+++FTR
Sbjct: 5 CEVCTRAFARQEHLKRHYRS-HTNEKP---------------------YPCGLCNRAFTR 42
Query: 725 KDSLKKHNRIFHGG 738
+D L +H + H G
Sbjct: 43 RDLLIRHAQKIHSG 56
Score = 36.6 bits (83), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 19 MCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIH 71
+CE+C + F +E+L RH + H ++ K + C C++ F+ L +H+ IH
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTNE--KPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNGPK-YTCEICAKEFTR 193
F C VC++ A LKRH H K Y C +C + FTR
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTR 42
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 39/94 (41%)
Query: 508 CRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIPC 567
C +C++ F R++ L++H R + TN K PC
Sbjct: 5 CEVCTRAFARQEHLKRHYR-----SHTNEKP--------------------------YPC 33
Query: 568 ELCYKTFTRKDSLRKHMKIFHTRRNPSANSGNSG 601
LC + FTR+D L +H + H SGN G
Sbjct: 34 GLCNRAFTRRDLLIRHAQKIH--------SGNLG 59
Score = 32.7 bits (73), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 48 FKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRQANGSNVNN 103
F CE C + F+ L +H + H K + C LC + F++R+ L R A + N
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRS-HTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 276 LTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMK 324
C +C + F + L +H + H ++ C CN+ F+R L +H +
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQ 51
Score = 32.7 bits (73), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 664 PCTLCDKTFTRKDSLKKHIRIFHTQN 689
PC LC++ FTR+D L +H + H+ N
Sbjct: 32 PCGLCNRAFTRRDLLIRHAQKIHSGN 57
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 182 YTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHIENNH 236
+ CE+C + F R L H + H +E C C + F ++ L H + H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNE---KPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 20/70 (28%)
Query: 79 CDLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRN 138
C++C + F+++ +LKR H K + C LC + F++R+
Sbjct: 5 CEVCTRAFARQEHLKRHYRS--------------------HTNEKPYPCGLCNRAFTRRD 44
Query: 139 NLKRHLEEVH 148
L RH +++H
Sbjct: 45 LLIRHAQKIH 54
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 176 IHNGPK-YTCEICAKEFTRVYELNIH-KKLHEDESVANQLKCEFCGKVFLKKSNLKAHIE 233
H G K Y C C K F + L++H K+ H+ V C CGK F +++ + H +
Sbjct: 9 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD 68
Query: 234 N 234
N
Sbjct: 69 N 69
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 26/90 (28%)
Query: 644 NTSSVDNRTSVG--PVAPIDRIPCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVAL 701
+S RT G P A C+ CDKTF +K L H + +H N
Sbjct: 1 GSSGSSGRTHTGEKPYA------CSHCDKTFRQKQLLDMHFKRYHDPN------------ 42
Query: 702 GARANAAFIDRIRCELCDKSFTRKDSLKKH 731
AAF+ C C K+FTR++++ +H
Sbjct: 43 --FVPAAFV----CSKCGKTFTRRNTMARH 66
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQR---LKLHECDLCGKNFSQRNNLKRQAN 97
K + C CDK F L+ H H C CGK F++RN + R A+
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD 68
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 27/82 (32%)
Query: 443 ANKIIQCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNN 502
K C C KTF +K L H K +H PN +
Sbjct: 12 GEKPYACSHCDKTFRQKQLLDMHFKRYH---------------DPNFVP----------- 45
Query: 503 NAIIQCRICSKTFTRKDSLRKH 524
A C C KTFTR++++ +H
Sbjct: 46 -AAFVCSKCGKTFTRRNTMARH 66
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 127 CDLCGKNFSQRNNLKRHLEEVHRTDGMKFE 156
C CGK F++RN + RH + DG++ E
Sbjct: 50 CSKCGKTFTRRNTMARHADNCAGPDGVEGE 79
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 27/87 (31%)
Query: 497 GKVPNNNAIIQCRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKE 556
G+ C C KTF +K L H +R+H D N
Sbjct: 7 GRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYH---DPNF-------------------- 43
Query: 557 SGHEIKSRIPCELCYKTFTRKDSLRKH 583
+ + C C KTFTR++++ +H
Sbjct: 44 ----VPAAFVCSKCGKTFTRRNTMARH 66
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 51 EQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNL 92
E CD+RFS + EL +H IH K +C +C +NFS+ ++L
Sbjct: 25 ESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHL 65
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 22/70 (31%)
Query: 664 PCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFT 723
P CD+ F+R D L +HIRI HT +P +C +C ++F+
Sbjct: 23 PVESCDRRFSRSDELTRHIRI-HTGQKP---------------------FQCRICMRNFS 60
Query: 724 RKDSLKKHNR 733
R D L H R
Sbjct: 61 RSDHLTTHIR 70
Score = 35.8 bits (81), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 281 CFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
C + F +L +H+++H QCR C + FSR+ +L H++T T
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 155 FECYV--CSKVLATSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
+ C V C + + S L RH+ IH G K + C IC + F+R L H + H
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 102 NNRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRHLE 145
+ RFS + EL +H IH K +C +C +NFS+ ++L H+
Sbjct: 28 DRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIR 70
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 21 ELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKH 66
E C + F + L RH++IH + K F+C C + FS + L H
Sbjct: 25 ESCDRRFSRSDELTRHIRIHTGQ--KPFQCRICMRNFSRSDHLTTH 68
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 182 YTCEI--CAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHIENN 235
Y C + C + F+R EL H ++H + +C C + F + +L HI +
Sbjct: 20 YACPVESCDRRFSRSDELTRHIRIHTGQ---KPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 473 ISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQCRICSKTFTRKDSLRKHMR 526
+ P A ES + + + + + + ++ QCRIC + F+R D L H+R
Sbjct: 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIR 70
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 37.0 bits (84), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 115 SSAIHQRLKLHECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHL 174
S H K +EC +C F+Q +K H+ + H + KF C C V+A L HL
Sbjct: 6 SGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHL 65
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 177 HNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHIENN 235
H+G K Y C IC FT+ + +H E+VA + C C V +KS+L H+
Sbjct: 10 HSGEKPYECYICHARFTQSGTMKMHILQKHTENVA-KFHCPHCDTVIARKSDLGVHLRKQ 68
Query: 236 H 236
H
Sbjct: 69 H 69
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 20/77 (25%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C +C FT+ ++K HI HT+N + + C CD R
Sbjct: 18 CYICHARFTQSGTMKMHILQKHTEN--------------------VAKFHCPHCDTVIAR 57
Query: 725 KDSLKKHNRIFHGGADP 741
K L H R H + P
Sbjct: 58 KSDLGVHLRKQHSYSGP 74
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 155 FECYVCSKVLATSHSLKRHLL---IHNGPKYTCEICAKEFTRVYELNIH 200
+ECY+C S ++K H+L N K+ C C R +L +H
Sbjct: 16 YECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVH 64
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKL 203
F+C +C + + S L H+ H G K + C+IC ++F R E H+ +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 33.5 bits (75), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 22/72 (30%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C +C + F+R D L HIR HT +P C++C + F R
Sbjct: 6 CRICMRNFSRSDHLTTHIRT-HTGEKP---------------------FACDICGRKFAR 43
Query: 725 KDSLKKHNRIFH 736
D K+H I H
Sbjct: 44 SDERKRHRDIQH 55
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 182 YTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHIENNHL 237
+ C IC + F+R L H + H E C+ CG+ F + K H + H+
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGE---KPFACDICGRKFARSDERKRHRDIQHI 56
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRQANGSNV 101
K F+C C + FS + L H H K CD+CG+ F++ + KR + ++
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFACDICGRKFARSDERKRHRDIQHI 56
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 276 LTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQH 322
C IC + F L H++ H + C C + F+R+ K+H
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 20 CELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIH 71
C +C + F ++L H++ H + K F C+ C ++F+ + E +H H
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGE--KPFACDICGRKFARSDERKRHRDIQH 55
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 29/83 (34%), Gaps = 31/83 (37%)
Query: 506 IQCRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRI 565
QCRIC + F+R D L H+R H +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIR-------------------------------THTGEKPF 32
Query: 566 PCELCYKTFTRKDSLRKHMKIFH 588
C++C + F R D ++H I H
Sbjct: 33 ACDICGRKFARSDERKRHRDIQH 55
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 31/87 (35%)
Query: 445 KIIQCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNA 504
K QC IC++ F++ D L H++ HT P A
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRT-HTGEKPFA--------------------------- 33
Query: 505 IIQCRICSKTFTRKDSLRKHMRRFHII 531
C IC + F R D ++H HI+
Sbjct: 34 ---CDICGRKFARSDERKRHRDIQHIL 57
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 36.2 bits (82), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 8 HIKSHEYVENHMCEL--CYKVFESRENLMRHLKIHDDKESKRFKCE--QCDKRFSSNAEL 63
HI+ H + C C K+F ENL H + H + K FKCE CD+RF+++++
Sbjct: 81 HIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGE--KPFKCEFEGCDRRFANSSDR 138
Query: 64 NKH 66
KH
Sbjct: 139 KKH 141
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 15/84 (17%)
Query: 160 CSKVLATSHSLKRHLLIH--NGPKYTCEIC--------AKEFTRVYELNIHKKLHEDESV 209
C + +T H L H+ + GP+ +C K F Y+L H ++H E
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGE-- 88
Query: 210 ANQLKCEF--CGKVFLKKSNLKAH 231
C F CGK+F + NLK H
Sbjct: 89 -KPFPCPFPGCGKIFARSENLKIH 111
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 283 KTFLTEVDLGKHMKMHMDDNQIQCRF--CNKYFSRNYNLKQHMKTCT 327
K+F + L H+++H + C F C K F+R+ NLK H +T T
Sbjct: 70 KSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHT 116
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 36.2 bits (82), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 278 CLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCTKNVSNG 333
C+ C K F L +H ++H + +C C K FS+N L H + T S+G
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSSG 72
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 18 HMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKH 66
+ C C K F L++H ++H + K +KC +C K FS N+ L H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGE--KPYKCLECGKAFSQNSGLINH 61
Score = 33.1 bits (74), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 182 YTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAH 231
Y C C K F+R L H+++H E KC CGK F + S L H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGE---KPYKCLECGKAFSQNSGLINH 61
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
+ C C K + S L +H +H G K Y C C K F++ L H+++H
Sbjct: 15 YGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 123 KLHECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIH-NGP 180
K + C CGK FS+ + L +H + VH T ++C C K + + L H IH +GP
Sbjct: 13 KPYGCVECGKAFSRSSILVQH-QRVH-TGEKPYKCLECGKAFSQNSGLINHQRIHTSGP 69
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 22/76 (28%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C C K F+R L +H R+ HT +P +C C K+F++
Sbjct: 17 CVECGKAFSRSSILVQHQRV-HTGEKP---------------------YKCLECGKAFSQ 54
Query: 725 KDSLKKHNRIFHGGAD 740
L H RI G
Sbjct: 55 NSGLINHQRIHTSGPS 70
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 35.8 bits (81), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDE 207
++C C +L H +H G K Y C IC +F R L H ++H E
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE 71
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLK 93
K +KC++C F L H + +H K + C++CG F++ NLK
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKT-VHTGEKPYRCNICGAQFNRPANLK 62
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 123 KLHECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHNGPK 181
K ++CD C +F + NL H + VH T + C +C +LK H IH+G K
Sbjct: 16 KPYKCDRCQASFRYKGNLASH-KTVH-TGEKPYRCNICGAQFNRPANLKTHTRIHSGEK 72
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 182 YTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHI 232
Y C+ C F L HK +H E +C CG F + +NLK H
Sbjct: 18 YKCDRCQASFRYKGNLASHKTVHTGEK---PYRCNICGAQFNRPANLKTHT 65
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 278 CLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMK 324
C C +F + +L H +H + +C C F+R NLK H +
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTR 66
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 28/77 (36%), Gaps = 23/77 (29%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C C +F K +L H + HT +P RC +C F R
Sbjct: 20 CDRCQASFRYKGNLASH-KTVHTGEKP---------------------YRCNICGAQFNR 57
Query: 725 KDSLKKHNRIFHGGADP 741
+LK H RI H G P
Sbjct: 58 PANLKTHTRI-HSGEKP 73
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 125 HECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHL 174
H C +CG++F+ + +RHL +H F C C +S L RH+
Sbjct: 29 HLCPVCGESFASKGAQERHLRLLHA--AQVFPCKYCPATFYSSPGLTRHI 76
Score = 33.9 bits (76), Expect = 0.41, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 16 ENHMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIH 71
E H+C +C + F S+ RHL++ ++ F C+ C F S+ L +H + H
Sbjct: 27 ECHLCPVCGESFASKGAQERHLRLL--HAAQVFPCKYCPATFYSSPGLTRHINKCH 80
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 566 PCELCYKTFTRKDSLRKHMKIFH 588
PC C+K FTRKD++ H+KI H
Sbjct: 42 PCPFCFKEFTRKDNMTAHVKIIH 64
Score = 32.7 bits (73), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 664 PCTLCDKTFTRKDSLKKHIRIFH 686
PC C K FTRKD++ H++I H
Sbjct: 42 PCPFCFKEFTRKDNMTAHVKIIH 64
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 182 YTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHIENNH 236
Y C++C++ +T + H +V C FC K F +K N+ AH++ H
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNV-KVYPCPFCFKEFTRKDNMTAHVKIIH 64
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 20 CELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQ 72
C++C +V+ N RH + K + C C K F+ + H IH+
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/46 (23%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 105 FSSNAELNKHSSAIHQR-LKLHECDLCGKNFSQRNNLKRHLEEVHR 149
++ + +H H+R +K++ C C K F++++N+ H++ +H+
Sbjct: 20 YTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 182 YTCEICAKEFTRVYELNIHKKLHEDESVAN 211
Y C IC K FT+ +L++H+++H E +
Sbjct: 13 YECSICGKSFTKKSQLHVHQQIHTGEKPSG 42
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHTRRNPSANS 597
C +C K+FT+K L H +I HT PS S
Sbjct: 15 CSICGKSFTKKSQLHVHQQI-HTGEKPSGPS 44
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 46 KRFKCEQCDKRFSSNAELNKH 66
K FKCE+C KRF+ N++L+ H
Sbjct: 11 KPFKCEECGKRFTQNSQLHSH 31
>pdb|2EOX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
315- 345) Of Human Zinc Finger Protein 473
Length = 44
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 182 YTCEICAKEFTRVYELNIHKKLHEDES 208
Y C C K FTR++ L H+K+H +S
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHTRKS 39
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 122 LKLHECDLCGKNFSQRNNLKRHLEEVHRTD 151
+K ++CD CG++FS + RHL E H TD
Sbjct: 1 MKPYQCDYCGRSFSDPTSKMRHL-ETHDTD 29
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 14/25 (56%)
Query: 183 TCEICAKEFTRVYELNIHKKLHEDE 207
CEIC K F VY LN HK H E
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSHSGE 38
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 18 HMCELCYKVFESRENLMRHLKIH 40
++C +C K F R NL++H KIH
Sbjct: 13 YICTVCGKAFTDRSNLIKHQKIH 35
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNG--PKYTCEICAKEFTRVYELNIHKKLHEDESV 209
F C C K + L RH H G P+ +C C K F E+N H K+H+++
Sbjct: 5 FFCNFCGKTYRDASGLSRHRRAHLGYRPR-SCPECGKCFRDQSEVNRHLKVHQNKPA 60
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 9/60 (15%)
Query: 19 MCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHE 78
C C K + L RH + H + C +C K F +E+N+H LK+H+
Sbjct: 6 FCNFCGKTYRDASGLSRHRRAHLGYRPR--SCPECGKCFRDQSEVNRH-------LKVHQ 56
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 5 ISEHIKSHEYVENHMCELCYKVFESRENLMRHLKIHDDKES 45
+S H ++H C C K F + + RHLK+H +K +
Sbjct: 20 LSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNKPA 60
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 291 LGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKT 325
L KH++ H D C +CN F NL +HMK+
Sbjct: 17 LKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 21 ELCYKVFESRENLMRHLKIHDDKESKRFKCEQ--CDKRFSSNAELNKHSSAIH 71
E C K F S +L RH H + K F C+ CD RF++ A + KH + H
Sbjct: 39 EGCEKGFTSLHHLTRHSLTHTGE--KNFTCDSDGCDLRFTTKANMKKHFNRFH 89
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 182 YTCEICAKEFTRVYELNIHKKLHEDE 207
Y C++C KEF++ L H+++H E
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGE 38
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Query: 123 KLHECDLCGKNFSQRNNLKRHLEEVH 148
K ++CD+CGK FSQ ++L+ H + VH
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTH-QRVH 35
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 31.2 bits (69), Expect = 2.8, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNV 696
C C K F+R D L HI+ HT +P V
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 29.3 bits (64), Expect = 9.5, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHTRRNP 593
C+ C K F+R D L H+K HT P
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERP 41
>pdb|2ELR|A Chain A, Solution Structure Of The 15th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 123 KLHECDLCGKNFSQRNNLKRHLEEVHRTDG 152
K H CD+CGK F + LK H + +H DG
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSH-KLLHTADG 36
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNGPK 181
+C C K TS +LKRHL IH+G K
Sbjct: 3 LKCRECGKQFTTSGNLKRHLRIHSGEK 29
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHTRRNPSANS 597
C C K FTRK +L H KI HT PS S
Sbjct: 15 CTECGKAFTRKSTLSMHQKI-HTGEKPSGPS 44
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQP 691
CT C K FTRK +L H +I HT +P
Sbjct: 15 CTECGKAFTRKSTLSMHQKI-HTGEKP 40
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 182 YTCEICAKEFTRVYELNIHKKLHEDE 207
+ C C K FTR L++H+K+H E
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGE 38
>pdb|4DFI|A Chain A, Crystal Structure Of Cell Adhesion Molecule Nectin-2CD112
MUTANT FAMP
Length = 128
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 573 TFTRKDSLRKHMKI--FHTRRNPSANSGNSGTSAPPAVKLEQNGGEKVENSTSVENSTSV 630
T+ R D+ H + FH + PS +S G+ V +Q+ G+ E ++++T
Sbjct: 39 TWQRPDAPANHQNVAAFHPKSGPSFSSPKPGSERLSFVSAKQSTGQDTE--AELQDATLA 96
Query: 631 ENSTSVENSANVENTSSVDNRTSV 654
+ +VE+ N S + SV
Sbjct: 97 LHGLTVEDEGNYTCEFSTSPKGSV 120
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 713 IRCELCDKSFTRKDSLKKHNRIFHGGADP 741
RC+ CDKSF ++ +L H R+ H G P
Sbjct: 13 FRCDTCDKSFRQRSALNSH-RMIHTGEKP 40
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 30.4 bits (67), Expect = 4.7, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 182 YTCEICAKEFTRVYELNIHKKLHEDES 208
Y C+ C K FT+ L+IH+++H ES
Sbjct: 11 YVCQECGKAFTQSSCLSIHRRVHTGES 37
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 46 KRFKCEQCDKRFSSNAELNKH 66
K F+CE+C KRF+ N+ L+ H
Sbjct: 11 KPFQCEECGKRFTQNSHLHSH 31
>pdb|1PAA|A Chain A, Structure Of A Histidine-X4-Histidine Zinc Finger Domain:
Insights Into Adr1-Uas1 Protein-Dna Recognition
Length = 30
Score = 30.0 bits (66), Expect = 6.1, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGG 738
C LC+++FTR+D L +H + H G
Sbjct: 5 CGLCNRAFTRRDLLIRHAQKIHSG 28
Score = 29.6 bits (65), Expect = 6.9, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQN 689
C LC++ FTR+D L +H + H+ N
Sbjct: 5 CGLCNRAFTRRDLLIRHAQKIHSGN 29
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 182 YTCEICAKEFTRVYELNIHKKLHEDE 207
+ C C K F+R LN+H KLH E
Sbjct: 13 FKCVECGKGFSRRSALNVHHKLHTGE 38
>pdb|2VLN|B Chain B, N75a Mutant Of E9 Dnase Domain In Complex With Im9
Length = 134
Score = 29.6 bits (65), Expect = 6.7, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 32/76 (42%), Gaps = 7/76 (9%)
Query: 550 LDVILKESGHEIKSRIPCELCYKTFTRKDSLRKHM-------KIFHTRRNPSANSGNSGT 602
LD K+SG I RI +L K F D RK + NPSA S S
Sbjct: 23 LDDAGKDSGAPIPDRIADKLRDKEFKSFDDFRKAVWEEVSKDPELSKNLNPSAKSSVSKG 82
Query: 603 SAPPAVKLEQNGGEKV 618
+P K +Q GG KV
Sbjct: 83 YSPFTPKNQQVGGRKV 98
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 46 KRFKCEQCDKRFSSNAELNKH 66
KR+KC +C K FS N++L++H
Sbjct: 11 KRYKCNECGKVFSRNSQLSQH 31
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 29.6 bits (65), Expect = 7.7, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 19 MCELCYKVFESRENLMRHLKIHDDKES 45
+C +C F ++ N RHLK+H D S
Sbjct: 9 VCRICLSAFTTKANCARHLKVHTDTLS 35
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 150 TDGMKFECYVCSKVLATSHSLKRHLLIHNGPK 181
+ G F C C+KV HSL+ HL IH K
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 29.3 bits (64), Expect = 9.3, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 123 KLHECDLCGKNFSQRNNLKRHLEEVHRTDG 152
K ++C CGK+FSQR +L H E +H G
Sbjct: 9 KPYQCKECGKSFSQRGSLAVH-ERLHTGSG 37
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,193,546
Number of Sequences: 62578
Number of extensions: 858873
Number of successful extensions: 4450
Number of sequences better than 100.0: 93
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 2882
Number of HSP's gapped (non-prelim): 1207
length of query: 843
length of database: 14,973,337
effective HSP length: 107
effective length of query: 736
effective length of database: 8,277,491
effective search space: 6092233376
effective search space used: 6092233376
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)