RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8170
(843 letters)
>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 493
Score = 38.8 bits (90), Expect = 0.011
Identities = 30/127 (23%), Positives = 40/127 (31%), Gaps = 24/127 (18%)
Query: 47 RFKC--EQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKN---FSQRNNLKRQANGSNV 101
FKC +C +R S EL KH A H + C C N F L R + +
Sbjct: 151 SFKCPKSKCHRRCGSLKELKKHYKAQHGFVL---CSECIGNKKDFWNEIRLFRSSTLRDH 207
Query: 102 NNRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCS 161
N H C C F + L+RH H C++C
Sbjct: 208 KNGGLEEEGFKGHP----------LCIFCKIYFYDDDELRRHCRLRHE------ACHICD 251
Query: 162 KVLATSH 168
V +
Sbjct: 252 MVGPIRY 258
Score = 31.9 bits (72), Expect = 1.6
Identities = 19/108 (17%), Positives = 32/108 (29%), Gaps = 19/108 (17%)
Query: 230 AHIENNHLDYSCLECKAVGEEISFDTKKNLLLHLKTKHKNVISNVYLTCLICFK------ 283
+ + D +C + K L H K +H V+ C C
Sbjct: 140 EDVRDEMEDLLSFKCPKSKCHRRCGSLKELKKHYKAQHGFVL------CSECIGNKKDFW 193
Query: 284 ---TFLTEVDLGKHMKMHMDDN----QIQCRFCNKYFSRNYNLKQHMK 324
L H +++ C FC YF + L++H +
Sbjct: 194 NEIRLFRSSTLRDHKNGGLEEEGFKGHPLCIFCKIYFYDDDELRRHCR 241
Score = 31.1 bits (70), Expect = 2.4
Identities = 24/108 (22%), Positives = 37/108 (34%), Gaps = 15/108 (13%)
Query: 153 MKFEC--YVCSKVLATSHSLKRHLLIHNGPKYTCEICA---KEFTRVYELNIHKKLHEDE 207
+ F+C C + + LK+H +G C C K+F L L + +
Sbjct: 150 LSFKCPKSKCHRRCGSLKELKKHYKAQHG-FVLCSECIGNKKDFWNEIRLFRSSTLRDHK 208
Query: 208 SVANQ-------LKCEFCGKVFLKKSNLKAHIENNHLDYSCLECKAVG 248
+ + C FC F L+ H H +C C VG
Sbjct: 209 NGGLEEEGFKGHPLCIFCKIYFYDDDELRRHCRLRH--EACHICDMVG 254
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys. The
C2H2 zinc finger is composed of two short beta strands
followed by an alpha helix. The amino terminal part of
the helix binds the major groove in DNA binding zinc
fingers. The accepted consensus binding sequence for Sp1
is usually defined by the asymmetric hexanucleotide core
GGGCGG but this sequence does not include, among others,
the GAG (=CTC) repeat that constitutes a high-affinity
site for Sp1 binding to the wt1 promoter.
Length = 22
Score = 33.5 bits (77), Expect = 0.015
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 305 QCRFCNKYFSRNYNLKQHMKTC 326
+C C K FSR NLK+H++T
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 32.3 bits (74), Expect = 0.032
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 777 CKICNRTFTRNYNLKKHMKT 796
C C ++F+R NLK+H++T
Sbjct: 2 CPDCGKSFSRKSNLKRHLRT 21
Score = 31.5 bits (72), Expect = 0.066
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 507 QCRICSKTFTRKDSLRKHMRR 527
+C C K+F+RK +L++H+R
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRT 21
Score = 30.8 bits (70), Expect = 0.14
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 665 CTLCDKTFTRKDSLKKHIRI 684
C C K+F+RK +LK+H+R
Sbjct: 2 CPDCGKSFSRKSNLKRHLRT 21
Score = 30.0 bits (68), Expect = 0.23
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 19 MCELCYKVFESRENLMRHLKIH 40
C C K F + NL RHL+ H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 29.6 bits (67), Expect = 0.31
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 714 RCELCDKSFTRKDSLKKHNRI 734
+C C KSF+RK +LK+H R
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRT 21
Score = 29.6 bits (67), Expect = 0.32
Identities = 8/21 (38%), Positives = 16/21 (76%)
Query: 448 QCHICLKTFAKKDSLKKHMKV 468
+C C K+F++K +LK+H++
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRT 21
Score = 29.2 bits (66), Expect = 0.43
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 567 CELCYKTFTRKDSLRKHMKI 586
C C K+F+RK +L++H++
Sbjct: 2 CPDCGKSFSRKSNLKRHLRT 21
Score = 28.5 bits (64), Expect = 0.85
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 126 ECDLCGKNFSQRNNLKRHL 144
+C CGK+FS+++NLKRHL
Sbjct: 1 KCPDCGKSFSRKSNLKRHL 19
Score = 27.7 bits (62), Expect = 1.4
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 214 KCEFCGKVFLKKSNLKAHI 232
KC CGK F +KSNLK H+
Sbjct: 1 KCPDCGKSFSRKSNLKRHL 19
Score = 27.3 bits (61), Expect = 2.5
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 49 KCEQCDKRFSSNAELNKH 66
KC C K FS + L +H
Sbjct: 1 KCPDCGKSFSRKSNLKRH 18
Score = 26.5 bits (59), Expect = 4.1
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 183 TCEICAKEFTRVYELNIHKKLH 204
C C K F+R L H + H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 26.2 bits (58), Expect = 6.2
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 156 ECYVCSKVLATSHSLKRHLLIH 177
+C C K + +LKRHL H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
>gnl|CDD|206065 pfam13894, zf-C2H2_4, C2H2-type zinc finger. This family contains
a number of divergent C2H2 type zinc fingers.
Length = 24
Score = 32.6 bits (74), Expect = 0.028
Identities = 10/23 (43%), Positives = 19/23 (82%)
Query: 507 QCRICSKTFTRKDSLRKHMRRFH 529
+C +C K+F+ KD+L++H+R+ H
Sbjct: 2 KCPLCGKSFSSKDALKRHLRKHH 24
Score = 31.5 bits (71), Expect = 0.089
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 777 CKICNRTFTRNYNLKKHMKTVH 798
C +C ++F+ LK+H++ H
Sbjct: 3 CPLCGKSFSSKDALKRHLRKHH 24
Score = 29.9 bits (67), Expect = 0.32
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 125 HECDLCGKNFSQRNNLKRHLEEVH 148
+C LCGK+FS ++ LKRHL + H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKHH 24
Score = 29.5 bits (66), Expect = 0.35
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 566 PCELCYKTFTRKDSLRKHMKIFH 588
C LC K+F+ KD+L++H++ H
Sbjct: 2 KCPLCGKSFSSKDALKRHLRKHH 24
Score = 29.5 bits (66), Expect = 0.36
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 664 PCTLCDKTFTRKDSLKKHIRIFH 686
C LC K+F+ KD+LK+H+R H
Sbjct: 2 KCPLCGKSFSSKDALKRHLRKHH 24
Score = 29.1 bits (65), Expect = 0.52
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 305 QCRFCNKYFSRNYNLKQHMKTC 326
+C C K FS LK+H++
Sbjct: 2 KCPLCGKSFSSKDALKRHLRKH 23
Score = 28.8 bits (64), Expect = 0.85
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 18 HMCELCYKVFESRENLMRHLKIH 40
C LC K F S++ L RHL+ H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 28.4 bits (63), Expect = 0.90
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 448 QCHICLKTFAKKDSLKKHMKVFH 470
+C +C K+F+ KD+LK+H++ H
Sbjct: 2 KCPLCGKSFSSKDALKRHLRKHH 24
Score = 27.2 bits (60), Expect = 2.3
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 48 FKCEQCDKRFSSNAELNKHSSAIH 71
FKC C K FSS L +H H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKHH 24
Score = 27.2 bits (60), Expect = 2.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 214 KCEFCGKVFLKKSNLKAHIENNH 236
KC CGK F K LK H+ +H
Sbjct: 2 KCPLCGKSFSSKDALKRHLRKHH 24
Score = 26.8 bits (59), Expect = 3.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 155 FECYVCSKVLATSHSLKRHLLIH 177
F+C +C K ++ +LKRHL H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 26.4 bits (58), Expect = 4.3
Identities = 11/18 (61%), Positives = 15/18 (83%)
Query: 714 RCELCDKSFTRKDSLKKH 731
+C LC KSF+ KD+LK+H
Sbjct: 2 KCPLCGKSFSSKDALKRH 19
Score = 26.4 bits (58), Expect = 5.6
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 278 CLICFKTFLTEVDLGKHMKMH 298
C +C K+F ++ L +H++ H
Sbjct: 3 CPLCGKSFSSKDALKRHLRKH 23
Score = 25.7 bits (56), Expect = 8.6
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 182 YTCEICAKEFTRVYELNIHKKLH 204
+ C +C K F+ L H + H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 32.7 bits (75), Expect = 0.031
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 32 NLMRHLKIHDDKESKRFKCEQCDKRFSS 59
NL RH++ H K +KC C K FSS
Sbjct: 1 NLRRHMRTH--TGEKPYKCPVCGKSFSS 26
Score = 28.9 bits (65), Expect = 0.64
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 169 SLKRHLLIHNGPK-YTCEICAKEFTR 193
+L+RH+ H G K Y C +C K F+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 28.9 bits (65), Expect = 0.68
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 290 DLGKHMKMHMDDNQIQCRFCNKYFSR 315
+L +HM+ H + +C C K FS
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 37.3 bits (86), Expect = 0.040
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 25/82 (30%)
Query: 327 TKNVSNGILNCDDNEGEYNGHGSHEENEDDEDYDDMNEMMLVPVIKMELKEENEENEDRE 386
K G+ D G +G S EE E++E+ +EE EE E+ E
Sbjct: 845 AKQDEKGV----DGGGGSDGGDSEEEEEEEEE-----------------EEEEEEEEEEE 883
Query: 387 NQSEEENYTPV----PEVSIKR 404
+ EEEN P+ PE K+
Sbjct: 884 EEEEEENEEPLSLEWPETRQKQ 905
>gnl|CDD|221755 pfam12756, zf-C2H2_2, C2H2 type zinc-finger (2 copies). This
family contains two copies of a C2H2-like zinc finger
domain.
Length = 100
Score = 33.8 bits (78), Expect = 0.070
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 448 QCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVI--LQEGKVPNNNAI 505
C C T + +HM H + P+ E ++ ++ L+E K+ N
Sbjct: 1 DCLFCNHTSDTVEENLEHMFKSHGFFIPER------EYLVDLEGLLNYLRE-KIHEGN-- 51
Query: 506 IQCRICSKTFTRKDSLRKHMR 526
+C C K F ++LR+HMR
Sbjct: 52 -ECLYCGKQFKSLEALRQHMR 71
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 30.9 bits (70), Expect = 0.14
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 18 HMCELCYKVFESRENLMRHLKIH 40
+ C C KVF+S+ L H++ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 30.1 bits (68), Expect = 0.24
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 182 YTCEICAKEFTRVYELNIHKKLH 204
Y C C K F L H + H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 29.7 bits (67), Expect = 0.27
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 507 QCRICSKTFTRKDSLRKHMRR 527
+C C K F K +LR+HMR
Sbjct: 2 RCPECGKVFKSKSALREHMRT 22
Score = 28.6 bits (64), Expect = 0.90
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 665 CTLCDKTFTRKDSLKKHIRI 684
C C K F K +L++H+R
Sbjct: 3 CPECGKVFKSKSALREHMRT 22
Score = 27.8 bits (62), Expect = 1.3
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 777 CKICNRTFTRNYNLKKHMKT 796
C C + F L++HM+T
Sbjct: 3 CPECGKVFKSKSALREHMRT 22
Score = 27.8 bits (62), Expect = 1.7
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 448 QCHICLKTFAKKDSLKKHMKV 468
+C C K F K +L++HM+
Sbjct: 2 RCPECGKVFKSKSALREHMRT 22
Score = 27.8 bits (62), Expect = 1.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 567 CELCYKTFTRKDSLRKHMKI 586
C C K F K +LR+HM+
Sbjct: 3 CPECGKVFKSKSALREHMRT 22
Score = 27.4 bits (61), Expect = 2.2
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 48 FKCEQCDKRFSSNAELNKH 66
++C +C K F S + L +H
Sbjct: 1 YRCPECGKVFKSKSALREH 19
Score = 27.4 bits (61), Expect = 2.3
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 714 RCELCDKSFTRKDSLKKHNRI 734
RC C K F K +L++H R
Sbjct: 2 RCPECGKVFKSKSALREHMRT 22
Score = 27.0 bits (60), Expect = 3.2
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 305 QCRFCNKYFSRNYNLKQHMKT 325
+C C K F L++HM+T
Sbjct: 2 RCPECGKVFKSKSALREHMRT 22
Score = 26.3 bits (58), Expect = 5.4
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 125 HECDLCGKNFSQRNNLKRHL 144
+ C CGK F ++ L+ H+
Sbjct: 1 YRCPECGKVFKSKSALREHM 20
Score = 26.3 bits (58), Expect = 6.1
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 276 LTCLICFKTFLTEVDLGKHMKMH 298
C C K F ++ L +HM+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.9 bits (57), Expect = 6.9
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 155 FECYVCSKVLATSHSLKRHLLIH 177
+ C C KV + +L+ H+ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 25.9 bits (57), Expect = 8.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 213 LKCEFCGKVFLKKSNLKAHI 232
+C CGKVF KS L+ H+
Sbjct: 1 YRCPECGKVFKSKSALREHM 20
>gnl|CDD|214746 smart00614, ZnF_BED, BED zinc finger. DNA-binding domain in
chromatin-boundary-element-binding proteins and
transposases.
Length = 50
Score = 30.9 bits (70), Expect = 0.23
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 498 KVPNNNAIIQCRICSKTFTRKDS-----LRKHMRRFH 529
+ N +C+ C K +R LR+H+RR H
Sbjct: 11 EKDNGKQRAKCKYCGKKLSRSSKGGTSNLRRHLRRKH 47
Score = 28.9 bits (65), Expect = 1.2
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 5/28 (17%)
Query: 777 CKICNRTFTRNY-----NLKKHMKTVHK 799
CK C + +R+ NL++H++ H
Sbjct: 21 CKYCGKKLSRSSKGGTSNLRRHLRRKHP 48
>gnl|CDD|202452 pfam02892, zf-BED, BED zinc finger.
Length = 43
Score = 30.3 bits (69), Expect = 0.27
Identities = 7/35 (20%), Positives = 14/35 (40%), Gaps = 3/35 (8%)
Query: 498 KVPNNNAIIQCRICSKTFTRKDS---LRKHMRRFH 529
+V +C+ C K + L++H+ R
Sbjct: 8 RVKGGKTKARCKYCGKILSGGGGTSNLKRHLVRKC 42
Score = 30.3 bits (69), Expect = 0.34
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 299 MDDNQIQCRFCNKYFSRNY---NLKQHMKTC 326
+ +C++C K S NLK+H+
Sbjct: 11 GGKTKARCKYCGKILSGGGGTSNLKRHLVRK 41
Score = 27.6 bits (62), Expect = 2.4
Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 777 CKICNRTFTRNY---NLKKHMKTVHK 799
CK C + + NLK+H+
Sbjct: 18 CKYCGKILSGGGGTSNLKRHLVRKCP 43
>gnl|CDD|115579 pfam06933, SSP160, Special lobe-specific silk protein SSP160. This
family consists of several special lobe-specific silk
protein SSP160 sequences which appear to be specific to
Chironomus (Midge) species.
Length = 758
Score = 34.0 bits (77), Expect = 0.39
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 620 NSTSVENSTSVENSTSVENSANVENTSSVDNRTSVG 655
NS S NST+ NST+ NS N++S N +++
Sbjct: 288 NSNSTSNSTTNSNSTTTTNSTTSTNSTSSSNSSTIA 323
Score = 30.5 bits (68), Expect = 5.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 620 NSTSVENSTSVENSTSVENSANVENTSSVDNRTS 653
++ S NS S NST+ NS N+++ N TS
Sbjct: 282 SANSTSNSNSTSNSTTNSNSTTTTNSTTSTNSTS 315
>gnl|CDD|212564 cd11674, lambda-1, inner capsid protein lambda-1 or VP3. The
reovirus inner capsid protein lambda-1 displays
nucleoside triphosphate phosphohydrolase (NTPase),
RNA-5'-triphosphatase (RTPase), and RNA helicase
activity and may play a role in the transcription of the
virus genome, the unwinding or reannealing of
double-stranded RNA during RNA synthesis. The RTPase
activity constitutes the first step in the capping of
RNA, resulting in a 5'-diphosphorylated RNA plus-strand.
lambda1 is an Orthoreovirus core protein, VP3 is the
homologous core protein in Aquareoviruses.
Length = 1166
Score = 33.6 bits (77), Expect = 0.52
Identities = 9/48 (18%), Positives = 18/48 (37%)
Query: 756 LEVVLNEDGEGEPVSITNEILCKICNRTFTRNYNLKKHMKTVHKIDDN 803
V+ + + +C +C F+ L +H +T H I +
Sbjct: 55 AAVISPPQSKKATPINPSSYVCNVCMAEFSSMDQLAEHQRTTHSIGAS 102
>gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication,
recombination, and repair].
Length = 1041
Score = 33.1 bits (76), Expect = 0.71
Identities = 10/68 (14%), Positives = 24/68 (35%), Gaps = 8/68 (11%)
Query: 783 TFTRNYNLKKHMKTVHKIDDNEP-----YFAYENTEY---DEEEGEMEGEEFGSLSNSML 834
F +YN+ ++ V + E + ++N+ E+ E +E ++ +
Sbjct: 558 QFRLSYNMILNLLRVEGLQTAEDLLERSFAQFQNSRSLPEIVEKLERLEKELNDIATELF 617
Query: 835 EVIIRDDE 842
D
Sbjct: 618 GTDENDAP 625
>gnl|CDD|222211 pfam13542, HTH_Tnp_ISL3, Helix-turn-helix domain of transposase
family ISL3.
Length = 65
Score = 29.6 bits (67), Expect = 0.89
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 23 CYKVFESRENLMRHLKIHDDK-----ESKRFKCEQCDKRFS 58
KV RE +RHL I +R++C++C K F+
Sbjct: 14 TIKVHGRRERRIRHLPIGGKPVYLRLRKRRYRCKECGKTFT 54
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase
inhibitor.
Length = 596
Score = 32.5 bits (74), Expect = 1.2
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 630 VENSTSVENSANVENTSSVDNRT-SVGPVAPIDRIPCTLCDKTF---TRKDSLKKHIRIF 685
V +N + N SS D+ S PV+ +D+I T+C+ T T +++LKK
Sbjct: 47 VSYENKSQNQSGNGNNSSKDSPVKSESPVSQVDKIIQTVCNATLYKQTCENTLKKGTEKD 106
Query: 686 HTQNQPQHTNVIEVALGA 703
+ QP ++++ A+ A
Sbjct: 107 PSLAQP--KDLLKSAIKA 122
>gnl|CDD|204841 pfam12171, zf-C2H2_jaz, Zinc-finger double-stranded RNA-binding.
This domain family is found in archaea and eukaryotes,
and is approximately 30 amino acids in length. The
mammalian members of this group occur multiple times
along the protein, joined by flexible linkers, and are
referred to as JAZ - dsRNA-binding ZF protein -
zinc-fingers. The JAZ proteins are expressed in all
tissues tested and localise in the nucleus, particularly
the nucleolus. JAZ preferentially binds to
double-stranded (ds) RNA or RNA/DNA hybrids rather than
DNA. In addition to binding double-stranded RNA, these
zinc-fingers are required for nucleolar localisation.
Length = 27
Score = 27.9 bits (63), Expect = 1.5
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 777 CKICNRTFTRNYNLKKHMKT-VHK 799
C C++ F L+ H+K+ HK
Sbjct: 4 CVACDKYFKSENALENHLKSKKHK 27
Score = 27.5 bits (62), Expect = 1.7
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 306 CRFCNKYFSRNYNLKQHMKT 325
C C+KYF L+ H+K+
Sbjct: 4 CVACDKYFKSENALENHLKS 23
>gnl|CDD|177288 PHA00616, PHA00616, hypothetical protein.
Length = 44
Score = 28.2 bits (63), Expect = 1.5
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 124 LHECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECY 158
+++C CG F ++ + HL VH+ + + E +
Sbjct: 1 MYQCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEYF 35
>gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide
2'-phosphodiesterase/3'-nucleotidase precursor protein;
Reviewed.
Length = 814
Score = 32.1 bits (73), Expect = 1.6
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 599 NSGTSAPPAVKLEQNGGEKVEN-STSVENSTSVENSTSVENSANVENTSSV-DNRTSVGP 656
+ T A +E + E+ +N T V +T+ E +S E + + TS D TS
Sbjct: 37 ATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETAETSDPTSEATDTTTSEAR 96
Query: 657 VAP 659
Sbjct: 97 TVT 99
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 31.6 bits (71), Expect = 1.7
Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 6/113 (5%)
Query: 41 DDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRL---KLHECDL--CGKNFSQRNNLKRQ 95
D + + + E N + + ++ K ++C + C K + +N LK
Sbjct: 311 IDVRKLPCTNSSSNGKLAHGGERNIDTPSRMLKVKDGKPYKCPVEGCNKKYKNQNGLKYH 370
Query: 96 ANGSNVNNRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRHLEEVH 148
+ N + N K + + K + C++C K + N LK H + H
Sbjct: 371 MLHGHQNQKLHENPSPEKMNIFSAKD-KPYRCEVCDKRYKNLNGLKYHRKHSH 422
Score = 31.2 bits (70), Expect = 2.4
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 668 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDS 727
C+K + ++ LK H+ H QNQ H N + +A RCE+CDK + +
Sbjct: 357 CNKKYKNQNGLKYHMLHGH-QNQKLHENPSPEKM--NIFSAKDKPYRCEVCDKRYKNLNG 413
Query: 728 LKKHNRIFH 736
LK H + H
Sbjct: 414 LKYHRKHSH 422
Score = 30.1 bits (67), Expect = 6.0
Identities = 28/163 (17%), Positives = 55/163 (33%), Gaps = 38/163 (23%)
Query: 387 NQSEEENYTPVPEVSIKRETDPLSVEDIISAGEVSITPIPQSNTNNHGSGSTNN------ 440
EE + E K + I + + + +P +N++++G +
Sbjct: 278 ELFEESSLGFDYEFIHKSVGNKEIRGGISTGEMIDVRKLPCTNSSSNGKLAHGGERNIDT 337
Query: 441 ------TQANKIIQCHI--CLKTFAKKDSLKKHMK------VFHTYISPDAIKEESGEGK 486
+ K +C + C K + ++ LK HM H SP+ + S + K
Sbjct: 338 PSRMLKVKDGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDK 397
Query: 487 PNILEVILQEGKVPNNNAIIQCRICSKTFTRKDSLRKHMRRFH 529
P +C +C K + + L+ H + H
Sbjct: 398 P------------------YRCEVCDKRYKNLNGLKYHRKHSH 422
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 29.8 bits (67), Expect = 2.1
Identities = 22/73 (30%), Positives = 27/73 (36%), Gaps = 29/73 (39%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C LC F+ SLK+HIR +H+ V C +C K F
Sbjct: 76 CPLCLMPFSSSVSLKQHIRY------TEHSKV------------------CPVCGKEFRN 111
Query: 725 KDSL-----KKHN 732
DS KKHN
Sbjct: 112 TDSTLDHVCKKHN 124
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
only].
Length = 467
Score = 31.6 bits (71), Expect = 2.1
Identities = 33/184 (17%), Positives = 58/184 (31%), Gaps = 6/184 (3%)
Query: 511 CSKTFTRKDSLRKHMRRFHIINDTNVKKEFT-EGQINRNMLDVILKESGHEIKSRIPCEL 569
S + DS I F+ + R++ V + S P L
Sbjct: 271 QSSSPNESDSS-SEKGFSLPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFS-CPYSL 328
Query: 570 CYKTFTRKDSLRKHMKIFHTRRNPSANSGNSGTSAPPAVKLEQNGGEKVENSTSVENSTS 629
C K F+R D+L++H+ + + NS + P + E + + S
Sbjct: 329 CGKLFSRNDALKRHILLHTSISPAKEKLLNSSSKFSPLLNNEPPQSL-QQYKDLKNDKKS 387
Query: 630 VENSTSVENSANVENTSSVDNRTSVGPVAPIDRIPCTLCDKTFTRKDSLKKHIRIFHTQN 689
S S + ++ S+ T + C K+F R +L H +I
Sbjct: 388 ETLSNSCIRNFKRDSNLSLHIITHLSF--RPYNCKNPPCSKSFNRHYNLIPHKKIHTNHA 445
Query: 690 QPQH 693
Sbjct: 446 PLLC 449
Score = 30.8 bits (69), Expect = 3.7
Identities = 37/164 (22%), Positives = 54/164 (32%), Gaps = 16/164 (9%)
Query: 18 HMCELCYKVFESRENLMRHL--KIHDDKESKRFKC--EQCDKRFSSNAELNKHSSAIHQR 73
+ C F L RHL H + K F C C K FS N L +H
Sbjct: 290 IKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHIL----- 344
Query: 74 LKLHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRLKLHECDLCGKN 133
LH K ++ K +NN + + K + L + +N
Sbjct: 345 --LHTSISPAKEKLLNSSSK---FSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCI--RN 397
Query: 134 FSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIH 177
F + +NL H+ + CSK ++L H IH
Sbjct: 398 FKRDSNLSLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIH 441
Score = 30.0 bits (67), Expect = 5.7
Identities = 50/344 (14%), Positives = 92/344 (26%), Gaps = 14/344 (4%)
Query: 6 SEHIKSHEYVENHMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNK 65
S C C F E+L RH++ H ++ + CDK FS EL++
Sbjct: 22 STLKSLSNAPRPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSR 81
Query: 66 HSSAIHQRLKLHECDLCGKNFSQRNNLKRQANGSNVN----NRFSSNAELNKHSSAIHQR 121
H H + S+ ++ ++ SN N S ++
Sbjct: 82 HLRTHHNNPSDLNSKSLPLSNSKASSSSLSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLL 141
Query: 122 LKLHE-CDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHNGP 180
+ + N S N + SK +++ SL +
Sbjct: 142 SISNLRNNPLPGNNSSSVNTPQSNSLHPPLPANSL-----SKDPSSNLSLLISSNVSTSI 196
Query: 181 KYTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHIENNHLDYS 240
+ E + + + E+ S + L S + + ++ S
Sbjct: 197 PSSSENSPLSSSYSIPSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQSPSSLSSSDSSSS 256
Query: 241 CLECKAVGEEISFDTKKNLLLHLKTKHKNV----ISNVYLTCLICFKTFLTEVDLGKHMK 296
E + + + K S + H
Sbjct: 257 ASESPRSSLPTASSQSSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRHLRSVNHSG 316
Query: 297 MHMDDNQIQCRFCNKYFSRNYNLKQHMKTCTKNVSNGILNCDDN 340
+ C K FSRN LK+H+ T + +
Sbjct: 317 ESLKPFSCPYSLCGKLFSRNDALKRHILLHTSISPAKEKLLNSS 360
>gnl|CDD|199835 cd10277, PQQ_ADH_I, Ethanol dehydrogenase, a bacterial quinoprotein
(PQQ-dependent type I alcohol dehydrogenase). This
bacterial family of homodimeric ethanol dehydrogenases
utilize pyrroloquinoline quinone (PQQ) as a cofactor. It
represents proteins whose expression may be induced by
ethanol, and which are similar to quinoprotein methanol
dehydrogenases, but have higher specificities for
ethanol and other primary and secondary alcohols.
Dehydrogenases with PQQ cofactors, such as ethanol,
methanol, and membrane-bound glucose dehydrogenases,
form an 8-bladed beta-propeller.
Length = 529
Score = 31.5 bits (72), Expect = 2.3
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 331 SNGILNCDDNEGEYNGHGSHEENEDDEDYDDMNEMMLV 368
++ +L D + G+ H + N D DYD +NE +L
Sbjct: 248 TSSVLALDPDTGKIKWHYQYTPN-DTWDYDGVNEPVLF 284
>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type. This is a zinc-finger
domain with the CxxCx(12)Hx(6)H motif, found in multiple
copies in a wide range of proteins from plants to
metazoans. Some member proteins, particularly those from
plants, are annotated as being RNA-binding.
Length = 25
Score = 27.1 bits (61), Expect = 2.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 665 CTLCDKTFTRKDSLKKHIR 683
C LC+ TFT + LK H+R
Sbjct: 3 CELCNVTFTSESQLKSHLR 21
Score = 26.7 bits (60), Expect = 3.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 714 RCELCDKSFTRKDSLKKHNR 733
CELC+ +FT + LK H R
Sbjct: 2 YCELCNVTFTSESQLKSHLR 21
Score = 26.3 bits (59), Expect = 5.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 777 CKICNRTFTRNYNLKKHMK 795
C++CN TFT LK H++
Sbjct: 3 CELCNVTFTSESQLKSHLR 21
Score = 25.5 bits (57), Expect = 8.9
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 508 CRICSKTFTRKDSLRKHMR 526
C +C+ TFT + L+ H+R
Sbjct: 3 CELCNVTFTSESQLKSHLR 21
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin. Nucleoplasmins are also
known as chromatin decondensation proteins. They bind to
core histones and transfer DNA to them in a reaction
that requires ATP. This is thought to play a role in the
assembly of regular nucleosomal arrays.
Length = 146
Score = 30.0 bits (68), Expect = 2.6
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 10/54 (18%)
Query: 347 HGSHEENEDDEDYDDMNEMMLVPVIKMELKEENEENEDRENQSEEENYTPVPEV 400
G H ++++ DD E EE ++ ED + EE +PV +V
Sbjct: 102 SGQHLVASEEDESDDDEEDE----------EEEDDEEDDDEDESEEEESPVKKV 145
>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine
Kinase, Insulin-like Growth Factor-1 Receptor. Protein
Tyrosine Kinase (PTK) family; Insulin-like Growth
Factor-1 Receptor (IGF-1R); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. IGF-1R is
a receptor tyr kinases (RTK) that is composed of two
alphabeta heterodimers. Binding of the ligand (IGF-1 or
IGF-2) to the extracellular alpha subunit activates the
intracellular tyr kinase domain of the transmembrane
beta subunit. Receptor activation leads to
autophosphorylation, which stimulates downstream kinase
activities and biological function. IGF-1R signaling is
important in the differentiation, growth, and survival
of normal cells. In cancer cells, where it is frequently
overexpressed, IGF-1R is implicated in proliferation,
the suppression of apoptosis, invasion, and metastasis.
IGF-1R is being developed as a therapeutic target in
cancer treatment.
Length = 277
Score = 30.8 bits (69), Expect = 3.2
Identities = 25/110 (22%), Positives = 44/110 (40%), Gaps = 18/110 (16%)
Query: 507 QCRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIP 566
+ R+ KT S+R+ R +N+ +V KEF + R +L V+ + P
Sbjct: 36 ETRVAIKTVNEAASMRE---RIEFLNEASVMKEFNCHHVVR-LLGVVSQGQ--------P 83
Query: 567 CELCYKTFTRKDSLRKHMKIFHTRRNPSANSGNSGTSAPPAVKLEQNGGE 616
+ + TR D L+ +++ N + P K+ Q GE
Sbjct: 84 TLVIMELMTRGD-LKSYLRSLR-----PEMENNPVQAPPSLKKMIQMAGE 127
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 31.1 bits (70), Expect = 3.5
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 332 NGILNCDDNEGEYNGHGSHEENED-DEDYDDMNEMMLVPVIKMELKEENEEN-EDRENQS 389
NG+ D E S EEN+D DE+ +D+ E + + + E NEE+ + E +S
Sbjct: 3865 NGVTK-DSVVSENENSDSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPNEEDLLETEQKS 3923
Query: 390 EEENYTPVPEVSIKRETDPLSVED 413
E++ + +E D ++ED
Sbjct: 3924 NEQSAANNESDLVSKEDDNKALED 3947
Score = 30.0 bits (67), Expect = 7.6
Identities = 18/106 (16%), Positives = 41/106 (38%), Gaps = 5/106 (4%)
Query: 338 DDNEGEYNGHGSHEENEDDEDYDDMNEMMLVPVIKMELKEEN-EENEDRENQSEEENYTP 396
+D++ E + N+ D D + E+ + K+ ENE+ +++ E ++
Sbjct: 3833 EDDDLEELANEEDTANQSDLDESEARELE--SDMNGVTKDSVVSENENSDSEEENQDLD- 3889
Query: 397 VPEVSIKRETDPLSVEDIISAGEVSITPIPQSNTNNHGSGSTNNTQ 442
EV+ E S+ + + + +N S + N +
Sbjct: 3890 -EEVNDIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNESD 3934
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 30.6 bits (69), Expect = 4.2
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Query: 338 DDNEGEYNGHGSHEENEDDEDYDDMNEMMLVPVIKMELKEENEENEDRENQSEEENYTPV 397
+ E + EE+ D EDY + MLV E EE E+ SE E+
Sbjct: 183 SEESAEDDSDDEEEEDSDSEDYSQY-DGMLVDSSDEEEGEEAPSINYNEDTSESESDESD 241
Query: 398 PEVSIKRETDP 408
E+S R
Sbjct: 242 SEISESRSVSD 252
>gnl|CDD|215056 PLN00104, PLN00104, MYST -like histone acetyltransferase;
Provisional.
Length = 450
Score = 30.5 bits (69), Expect = 4.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 306 CRFCNKYFSRNYNLKQHMKTC 326
C FC K+ R L++HMK C
Sbjct: 201 CEFCLKFMKRKEQLQRHMKKC 221
Score = 29.7 bits (67), Expect = 7.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 441 TQANKIIQCHICLKTFAKKDSLKKHMK 467
+K+ C CLK +K+ L++HMK
Sbjct: 193 NDCSKLYFCEFCLKFMKRKEQLQRHMK 219
>gnl|CDD|185713 cd07903, Adenylation_DNA_ligase_IV, Adenylation domain of DNA
Ligase IV. ATP-dependent polynucleotide ligases
catalyze phosphodiester bond formation using nicked
nucleic acid substrates with the high energy nucleotide
of ATP as a cofactor in a three step reaction mechanism.
DNA ligases play a vital role in the diverse processes
of DNA replication, recombination and repair.
ATP-dependent ligases are present in many organisms such
as viruses, bacteriophages, eukarya, archaea and
bacteria. There are three classes of ATP-dependent DNA
ligase in eukaryotic cells (I, III and IV). DNA ligase
IV is required for DNA non-homologous end joining
pathways, including recombination of the V(D)J
immunoglobulin gene segments in cells of the mammalian
immune system. DNA ligase IV is stabilized by forming a
complex with XRCC4, a nuclear phosphoprotein, which is
phosphorylated by DNA-dependent protein kinase. DNA
ligases have a highly modular architecture consisting of
a unique arrangement of two or more discrete domains.
The adenylation and C-terminal
oligonucleotide/oligosaccharide binding (OB)-fold
domains comprise a catalytic core unit that is common to
all members of the ATP-dependent DNA ligase family. The
adenylation domain binds ATP and contains many of the
active-site residues. The common catalytic unit
comprises six conserved sequence motifs (I, III, IIIa,
IV, V and VI) that define this family of related
nucleotidyltransferases.
Length = 225
Score = 29.9 bits (68), Expect = 4.7
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 7/40 (17%)
Query: 278 CLICFKTFLTEVDL-GKHMKMHMDDNQIQCRFCNKYFSRN 316
L+ K F E L G+ +++H D N+ KYFSRN
Sbjct: 28 KLLKGKPFYIETKLDGERIQLHKDGNEF------KYFSRN 61
>gnl|CDD|211330 cd02556, PseudoU_synth_RluB, Pseudouridine synthase, Escherichia
coli RluB like. This group is comprised of bacterial
and eukaryotic proteins similar to E. coli RluB.
Pseudouridine synthases catalyze the isomerization of
specific uridines in an RNA molecule to pseudouridines
(5-ribosyluracil, psi). No cofactors are required.
E.coli RluB makes psi2605 in 23S RNA. psi2605 has been
detected in eubacteria but, not in eukarya and archea
despite the presence of a precursor U at that site.
Length = 167
Score = 29.2 bits (66), Expect = 5.1
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 457 AKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGK 498
+ SLKK +++ + +I+ E GEGK + V L+EG+
Sbjct: 84 EQLKSLKKGVELEDGFAGFKSIQLEGGEGKNSWYRVTLREGR 125
>gnl|CDD|206084 pfam13913, zf-C2HC_2, zinc-finger of a C2HC-type. This family
contains a number of divergent C2H2 type zinc fingers.
Length = 25
Score = 26.0 bits (58), Expect = 7.0
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 447 IQCHICLKTFAKKDSLKKHMKV 468
+ C IC + FA D L KH KV
Sbjct: 3 VPCPICGRKFA-PDRLAKHEKV 23
>gnl|CDD|221444 pfam12156, ATPase-cat_bd, Putative metal-binding domain of cation
transport ATPase. This domain is found in bacteria, and
is approximately 90 amino acids in length. It is found
associated with pfam00403, pfam00122, pfam00702. The
cysteine-rich nature and composition suggest this might
be a cation-binding domain; most members are annotated
as being cation transport ATPases.
Length = 88
Score = 27.7 bits (62), Expect = 7.8
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 213 LKCEFCGKVFLKKSNLKAHIENNHLDYSCLECKAVGEEI 251
KC CG + A I+ D+ C C+AV E I
Sbjct: 1 TKCFHCGLPVPEGEPFTAEIDGQERDFCCPGCQAVAETI 39
>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional.
Length = 567
Score = 29.5 bits (66), Expect = 9.4
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 560 EIKSRIPCELCYKTFTRKDSLRKHMKIFH 588
E K+ + CE C + F + + + KHMK+FH
Sbjct: 449 EAKNHVHCEKCGQAFQQGE-MEKHMKVFH 476
>gnl|CDD|215562 PLN03078, PLN03078, Putative tRNA pseudouridine synthase;
Provisional.
Length = 513
Score = 29.5 bits (66), Expect = 9.5
Identities = 17/77 (22%), Positives = 35/77 (45%)
Query: 571 YKTFTRKDSLRKHMKIFHTRRNPSANSGNSGTSAPPAVKLEQNGGEKVENSTSVENSTSV 630
+ +T + RK + H +RN + + + + + E+N GE E + +S+
Sbjct: 238 FHNYTARSKYRKKLPGKHKQRNGAVSRRAKSSKEMSSSESEENHGEISEEDEEDLSFSSI 297
Query: 631 ENSTSVENSANVENTSS 647
+ +S EN ++ SS
Sbjct: 298 PSGSSDENEDILKFQSS 314
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 29.6 bits (67), Expect = 9.7
Identities = 12/55 (21%), Positives = 30/55 (54%)
Query: 338 DDNEGEYNGHGSHEENEDDEDYDDMNEMMLVPVIKMELKEENEENEDRENQSEEE 392
+D+E E + S ++ +D+ + DD + L + E +EE+ +++ E +++
Sbjct: 287 EDDEEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDD 341
>gnl|CDD|206083 pfam13912, zf-C2H2_6, C2H2-type zinc finger.
Length = 27
Score = 25.6 bits (57), Expect = 10.0
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 18 HMCELCYKVFESRENLMRHLKIH 40
H C +C K F S + L H K H
Sbjct: 2 HTCGVCGKTFSSLQALGGHKKSH 24
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.131 0.383
Gapped
Lambda K H
0.267 0.0672 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 40,422,597
Number of extensions: 3849477
Number of successful extensions: 4468
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4326
Number of HSP's successfully gapped: 173
Length of query: 843
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 738
Effective length of database: 6,280,432
Effective search space: 4634958816
Effective search space used: 4634958816
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.2 bits)