RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8170
(843 letters)
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 110 bits (278), Expect = 6e-28
Identities = 64/216 (29%), Positives = 89/216 (41%), Gaps = 49/216 (22%)
Query: 27 FESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRL----KLHECDLC 82
+ + + + K + C +C K FS + L A HQR K ++C C
Sbjct: 3 EFGSSSSVAQAALEPGE--KPYACPECGKSFSRSDHL-----AEHQRTHTGEKPYKCPEC 55
Query: 83 GKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRL----KLHECDLCGKNFSQRN 138
GK+FS + +L HQR K ++C CGK+FSQR
Sbjct: 56 GKSFSDKKDL------------------------TRHQRTHTGEKPYKCPECGKSFSQRA 91
Query: 139 NLKRHLEEVHRT-DGMK-FECYVCSKVLATSHSLKRHLLIHNGPK-YTCEICAKEFTRVY 195
NL+ H RT G K + C C K + L+ H H G K Y C C K F+R
Sbjct: 92 NLRAH----QRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSRED 147
Query: 196 ELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAH 231
L+ H++ H E KC CGK F ++ L H
Sbjct: 148 NLHTHQRTHTGE---KPYKCPECGKSFSRRDALNVH 180
Score = 104 bits (262), Expect = 7e-26
Identities = 64/196 (32%), Positives = 86/196 (43%), Gaps = 46/196 (23%)
Query: 20 CELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRL----K 75
C C K F ++L H + H + K +KC +C K FS +L HQR K
Sbjct: 24 CPECGKSFSRSDHLAEHQRTHTGE--KPYKCPECGKSFSDKKDL-----TRHQRTHTGEK 76
Query: 76 LHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRL----KLHECDLCG 131
++C CGK+FSQR NL HQR K + C CG
Sbjct: 77 PYKCPECGKSFSQRANL------------------------RAHQRTHTGEKPYACPECG 112
Query: 132 KNFSQRNNLKRHLEEVHRT-DGMK-FECYVCSKVLATSHSLKRHLLIHNGPK-YTCEICA 188
K+FSQ +L+ H RT G K ++C C K + +L H H G K Y C C
Sbjct: 113 KSFSQLAHLRAH----QRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECG 168
Query: 189 KEFTRVYELNIHKKLH 204
K F+R LN+H++ H
Sbjct: 169 KSFSRRDALNVHQRTH 184
Score = 95.2 bits (238), Expect = 1e-22
Identities = 65/217 (29%), Positives = 92/217 (42%), Gaps = 55/217 (25%)
Query: 66 HSS--AIHQRL----KLHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIH 119
SS L K + C CGK+FS+ ++L A H
Sbjct: 5 GSSSSVAQAALEPGEKPYACPECGKSFSRSDHL------------------------AEH 40
Query: 120 QRL----KLHECDLCGKNFSQRNNLKRHLEEVHRT-DGMK-FECYVCSKVLATSHSLKRH 173
QR K ++C CGK+FS + +L RH RT G K ++C C K + +L+ H
Sbjct: 41 QRTHTGEKPYKCPECGKSFSDKKDLTRH----QRTHTGEKPYKCPECGKSFSQRANLRAH 96
Query: 174 LLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHI 232
H G K Y C C K F+++ L H++ H E KC CGK F ++ NL H
Sbjct: 97 QRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGE---KPYKCPECGKSFSREDNLHTH- 152
Query: 233 ENNHLD---YSCLEC-KAVGEEISFDTKKNLLLHLKT 265
+ H Y C EC K+ F + L +H +T
Sbjct: 153 QRTHTGEKPYKCPECGKS------FSRRDALNVHQRT 183
Score = 81.0 bits (201), Expect = 1e-17
Identities = 62/224 (27%), Positives = 85/224 (37%), Gaps = 57/224 (25%)
Query: 114 HSS--AIHQRL----KLHECDLCGKNFSQRNNLKRHLEEVHRT-DGMK-FECYVCSKVLA 165
SS L K + C CGK+FS+ ++L H RT G K ++C C K +
Sbjct: 5 GSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEH----QRTHTGEKPYKCPECGKSFS 60
Query: 166 TSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLK 224
L RH H G K Y C C K F++ L H++ H E C CGK F +
Sbjct: 61 DKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGE---KPYACPECGKSFSQ 117
Query: 225 KSNLKAHIENNHLD---YSCLECKAVGEEISFDTKKNLLLHLKTKHKNVISNVYLTCLIC 281
++L+AH + H Y C EC
Sbjct: 118 LAHLRAH-QRTHTGEKPYKCPECG------------------------------------ 140
Query: 282 FKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKT 325
K+F E +L H + H + +C C K FSR L H +T
Sbjct: 141 -KSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRT 183
Score = 41.3 bits (98), Expect = 4e-04
Identities = 31/132 (23%), Positives = 44/132 (33%), Gaps = 56/132 (42%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C C K+F+R D L +H R HT +P +C C KSF+
Sbjct: 24 CPECGKSFSRSDHLAEHQRT-HTGEKP---------------------YKCPECGKSFSD 61
Query: 725 KDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNRTF 784
K L +H R H G P C C ++F
Sbjct: 62 KKDLTRHQRT-HTGEKPYK---------------------------------CPECGKSF 87
Query: 785 TRNYNLKKHMKT 796
++ NL+ H +T
Sbjct: 88 SQRANLRAHQRT 99
Score = 40.9 bits (97), Expect = 5e-04
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 22/70 (31%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C C K+F+R+D+L H R HT +P +C C KSF+R
Sbjct: 136 CPECGKSFSREDNLHTHQRT-HTGEKP---------------------YKCPECGKSFSR 173
Query: 725 KDSLKKHNRI 734
+D+L H R
Sbjct: 174 RDALNVHQRT 183
Score = 40.1 bits (95), Expect = 0.001
Identities = 30/132 (22%), Positives = 43/132 (32%), Gaps = 56/132 (42%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C C K+F++ L+ H R HT +P +C C KSF+R
Sbjct: 108 CPECGKSFSQLAHLRAHQRT-HTGEKP---------------------YKCPECGKSFSR 145
Query: 725 KDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNRTF 784
+D+L H R H G P C C ++F
Sbjct: 146 EDNLHTHQRT-HTGEKPYK---------------------------------CPECGKSF 171
Query: 785 TRNYNLKKHMKT 796
+R L H +T
Sbjct: 172 SRRDALNVHQRT 183
Score = 39.0 bits (92), Expect = 0.002
Identities = 29/132 (21%), Positives = 43/132 (32%), Gaps = 56/132 (42%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C C K+F+++ +L+ H R HT +P C C KSF++
Sbjct: 80 CPECGKSFSQRANLRAHQRT-HTGEKP---------------------YACPECGKSFSQ 117
Query: 725 KDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNRTF 784
L+ H R H G P C C ++F
Sbjct: 118 LAHLRAHQRT-HTGEKPYK---------------------------------CPECGKSF 143
Query: 785 TRNYNLKKHMKT 796
+R NL H +T
Sbjct: 144 SREDNLHTHQRT 155
Score = 37.4 bits (88), Expect = 0.007
Identities = 34/144 (23%), Positives = 50/144 (34%), Gaps = 67/144 (46%)
Query: 448 QCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQ 507
C C K+F++ D L +H + HT GE KP +
Sbjct: 23 ACPECGKSFSRSDHLAEHQRT-HT-----------GE-KP------------------YK 51
Query: 508 CRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIP- 566
C C K+F+ K L +H +R H T K P
Sbjct: 52 CPECGKSFSDKKDLTRH-QRTH----TGEK----------------------------PY 78
Query: 567 -CELCYKTFTRKDSLRKHMKIFHT 589
C C K+F+++ +LR H + HT
Sbjct: 79 KCPECGKSFSQRANLRAHQRT-HT 101
Score = 36.7 bits (86), Expect = 0.013
Identities = 38/158 (24%), Positives = 57/158 (36%), Gaps = 67/158 (42%)
Query: 448 QCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQ 507
+C C K+F+ K L +H + HT GE KP +
Sbjct: 51 KCPECGKSFSDKKDLTRHQRT-HT-----------GE-KP------------------YK 79
Query: 508 CRICSKTFTRKDSLRKHMRRFHIINDTNVK--------KEFTEGQINRNMLDVILKESGH 559
C C K+F+++ +LR H +R H T K K F++ H
Sbjct: 80 CPECGKSFSQRANLRAH-QRTH----TGEKPYACPECGKSFSQ--------------LAH 120
Query: 560 EIK-SRI-------PCELCYKTFTRKDSLRKHMKIFHT 589
R C C K+F+R+D+L H + HT
Sbjct: 121 LRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRT-HT 157
Score = 36.3 bits (85), Expect = 0.016
Identities = 35/144 (24%), Positives = 51/144 (35%), Gaps = 67/144 (46%)
Query: 448 QCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQ 507
C C K+F++ L+ H + HT GE KP +
Sbjct: 107 ACPECGKSFSQLAHLRAHQRT-HT-----------GE-KP------------------YK 135
Query: 508 CRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIP- 566
C C K+F+R+D+L H +R H T K P
Sbjct: 136 CPECGKSFSREDNLHTH-QRTH----TGEK----------------------------PY 162
Query: 567 -CELCYKTFTRKDSLRKHMKIFHT 589
C C K+F+R+D+L H + HT
Sbjct: 163 KCPECGKSFSRRDALNVHQRT-HT 185
Score = 32.8 bits (76), Expect = 0.29
Identities = 12/64 (18%), Positives = 17/64 (26%), Gaps = 22/64 (34%)
Query: 671 TFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDSLKK 730
+ S + +P C C KSF+R D L +
Sbjct: 2 SEFGSSSSVAQAAL-EPGEKP---------------------YACPECGKSFSRSDHLAE 39
Query: 731 HNRI 734
H R
Sbjct: 40 HQRT 43
Score = 30.9 bits (71), Expect = 1.3
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K+F+R+D+L H R HT
Sbjct: 164 CPECGKSFSRRDALNVHQRT-HT 185
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 86.5 bits (215), Expect = 5e-20
Identities = 43/180 (23%), Positives = 65/180 (36%), Gaps = 49/180 (27%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSA--IHQRLKLHECDLCG-----KNFSQRNNLKRQANG 98
+ + C + F S +L H ++ IH K C G + F + L
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLV----- 56
Query: 99 SNVNNRFSSNAELNKHSSAIHQRL----KLHECDL--CGKNFSQRNNLKRHLEEVHRT-D 151
+H R K H+C C K++S+ NLK HL R+
Sbjct: 57 -------------------VHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHL----RSHT 93
Query: 152 GMK-FEC--YVCSKVLATSHSLKRHLL-IHNGPK-YTCEI--CAKEFTRVYELNIHKKLH 204
G K + C CSK + + +H H+ K Y C++ C K +T L H K
Sbjct: 94 GEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTV 153
Score = 71.9 bits (177), Expect = 7e-15
Identities = 38/154 (24%), Positives = 55/154 (35%), Gaps = 20/154 (12%)
Query: 126 ECDLCGKNFSQRNNLKRHLEEVHRTDGMK-FECYVC-----SKVLATSHSLKRHLLIHNG 179
D C + F + L H+ H K F C+ + + L H+ H G
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 180 PK-YTCEI--CAKEFTRVYELNIHKKLHEDESVANQLKCEF--CGKVFLKKSNLKAHIEN 234
K + C C K ++R+ L H + H E CE C K F S+ H
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGE---KPYMCEHEGCSKAFSNASDRAKHQNR 121
Query: 235 NHLD---YSCLECKAVGEEISFDTKKNLLLHLKT 265
H + Y CK G + +L H+KT
Sbjct: 122 THSNEKPY---VCKLPGCTKRYTDPSSLRKHVKT 152
Score = 62.2 bits (152), Expect = 2e-11
Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 36/134 (26%)
Query: 20 CELCYKVFESRENLMRHLKIHDDKESKRFKC--EQCDKRFSSNAELNKHSSAIHQRL--- 74
C + F+++ L+ H++ H + K KC E C K +S L H R
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGE--KPHKCTFEGCRKSYSRLENLK-----THLRSHTG 94
Query: 75 -KLHEC--DLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRLKLHECDL-- 129
K + C + C K FS ++ KH + H K + C L
Sbjct: 95 EKPYMCEHEGCSKAFSNASDRA-------------------KHQNRTHSNEKPYVCKLPG 135
Query: 130 CGKNFSQRNNLKRH 143
C K ++ ++L++H
Sbjct: 136 CTKRYTDPSSLRKH 149
Score = 53.0 bits (128), Expect = 3e-08
Identities = 23/119 (19%), Positives = 40/119 (33%), Gaps = 39/119 (32%)
Query: 214 KCEFCGKVFLKKSNLKAHIENNHL-----DYSCLECKAVGEEISFDTKKNLLLHLKTKHK 268
+ + C + F + L HI + H+ ++ C
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGG----------------------- 41
Query: 269 NVISNVYLTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRF--CNKYFSRNYNLKQHMKT 325
C + F + L HM+ H + +C F C K +SR NLK H+++
Sbjct: 42 ---------CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRS 91
Score = 44.5 bits (106), Expect = 2e-05
Identities = 31/135 (22%), Positives = 46/135 (34%), Gaps = 59/135 (43%)
Query: 668 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCE--LCDKSFTRK 725
C K+++R ++LK H+R HT +P CE C K+F+
Sbjct: 75 CRKSYSRLENLKTHLRS-HTGEKP---------------------YMCEHEGCSKAFSNA 112
Query: 726 DSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKI--CNRT 783
KH H P V CK+ C +
Sbjct: 113 SDRAKHQNRTHSNEKPYV---------------------------------CKLPGCTKR 139
Query: 784 FTRNYNLKKHMKTVH 798
+T +L+KH+KTVH
Sbjct: 140 YTDPSSLRKHVKTVH 154
Score = 44.1 bits (105), Expect = 2e-05
Identities = 24/134 (17%), Positives = 40/134 (29%), Gaps = 52/134 (38%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C+ + F + L H+R HT +P C KS++R
Sbjct: 42 CSRELRPFKAQYMLVVHMRR-HTGEKPHKCTFEG-------------------CRKSYSR 81
Query: 725 KDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNRTF 784
++LK H R H G P + + + C++ F
Sbjct: 82 LENLKTHLRS-HTGEKPYMCEHEG-------------------------------CSKAF 109
Query: 785 TRNYNLKKHMKTVH 798
+ + KH H
Sbjct: 110 SNASDRAKHQNRTH 123
Score = 44.1 bits (105), Expect = 3e-05
Identities = 34/144 (23%), Positives = 47/144 (32%), Gaps = 70/144 (48%)
Query: 452 CLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQC--R 509
C K++++ ++LK H++ HT GE KP C
Sbjct: 75 CRKSYSRLENLKTHLRS-HT-----------GE-KP------------------YMCEHE 103
Query: 510 ICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIP--C 567
CSK F+ KH R H +N K P C
Sbjct: 104 GCSKAFSNASDRAKHQNRTH----SNEK----------------------------PYVC 131
Query: 568 EL--CYKTFTRKDSLRKHMKIFHT 589
+L C K +T SLRKH+K
Sbjct: 132 KLPGCTKRYTDPSSLRKHVKT-VH 154
Score = 39.9 bits (94), Expect = 9e-04
Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 19/70 (27%)
Query: 668 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDS 727
C K F+ KH H+ +P + C K +T S
Sbjct: 105 CSKAFSNASDRAKHQNRTHSNEKPYVCKLPG-------------------CTKRYTDPSS 145
Query: 728 LKKHNRIFHG 737
L+KH + HG
Sbjct: 146 LRKHVKTVHG 155
Score = 39.5 bits (93), Expect = 0.001
Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 24/83 (28%)
Query: 507 QCRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIP 566
+ CS+ F ++ L H+ HI +KEF
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHI--HGE-RKEFVCHWGG-------------------- 41
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C + F + L HM+ HT
Sbjct: 42 CSRELRPFKAQYMLVVHMRR-HT 63
Score = 36.8 bits (86), Expect = 0.009
Identities = 24/144 (16%), Positives = 42/144 (29%), Gaps = 57/144 (39%)
Query: 448 QCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQ 507
+ C + F ++ L H+ H + K + G
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIH---------GER-KEFVCH---WGG---------- 41
Query: 508 CRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGH--EIKSRI 565
C + F + L HMRR H E +
Sbjct: 42 CSRELRPFKAQYMLVVHMRR-------------------------------HTGEKPHKC 70
Query: 566 PCELCYKTFTRKDSLRKHMKIFHT 589
E C K+++R ++L+ H++ HT
Sbjct: 71 TFEGCRKSYSRLENLKTHLRS-HT 93
Score = 36.0 bits (84), Expect = 0.017
Identities = 13/83 (15%), Positives = 20/83 (24%), Gaps = 26/83 (31%)
Query: 714 RCELCDKSFTRKDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITN 773
R + C + F ++ L H H + +
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHG--------------------------ERKEFVCH 38
Query: 774 EILCKICNRTFTRNYNLKKHMKT 796
C R F Y L HM+
Sbjct: 39 WGGCSRELRPFKAQYMLVVHMRR 61
Score = 30.6 bits (70), Expect = 1.1
Identities = 5/22 (22%), Positives = 9/22 (40%)
Query: 777 CKICNRTFTRNYNLKKHMKTVH 798
C++ F L H+ + H
Sbjct: 6 WDGCSQEFDSQEQLVHHINSEH 27
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 81.0 bits (201), Expect = 2e-18
Identities = 28/135 (20%), Positives = 55/135 (40%), Gaps = 32/135 (23%)
Query: 20 CELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKH--SSAIHQRLKLH 77
C C+K F S+ L H + H + K F+C +C K + L +H + +++ ++
Sbjct: 10 CPTCHKKFLSKYYLKVHNRKHTGE--KPFECPKCGKCYFRKENLLEHEARNCMNRSEQVF 67
Query: 78 ECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRL----KLHECDLCGKN 133
C +C + F +R L +H ++C C +
Sbjct: 68 TCSVCQETFRRRMEL------------------------RLHMVSHTGEMPYKCSSCSQQ 103
Query: 134 FSQRNNLKRHLEEVH 148
F Q+ +L+ H+ ++H
Sbjct: 104 FMQKKDLQSHMIKLH 118
Score = 75.6 bits (187), Expect = 1e-16
Identities = 32/141 (22%), Positives = 58/141 (41%), Gaps = 29/141 (20%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRQANGSNVNNRF 105
+C C K+F S L H+ H K EC CGK + ++ N
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNR-KHTGEKPFECPKCGKCYFRKEN-------------- 50
Query: 106 SSNAELNKH--SSAIHQRLKLHECDLCGKNFSQRNNLKRHLEEVHRT-DGMK-FECYVCS 161
L +H + +++ ++ C +C + F +R L+ H + G ++C CS
Sbjct: 51 -----LLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLH----MVSHTGEMPYKCSSCS 101
Query: 162 KVLATSHSLKRHLL-IHNGPK 181
+ L+ H++ +H+GP
Sbjct: 102 QQFMQKKDLQSHMIKLHSGPS 122
Score = 75.6 bits (187), Expect = 1e-16
Identities = 32/136 (23%), Positives = 49/136 (36%), Gaps = 34/136 (25%)
Query: 75 KLHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRL----KLHECDLC 130
EC C K F + L +H R K EC C
Sbjct: 6 SGVECPTCHKKFLSKYYL------------------------KVHNRKHTGEKPFECPKC 41
Query: 131 GKNFSQRNNLKRH--LEEVHRTDGMK-FECYVCSKVLATSHSLKRHLLIHNGPK-YTCEI 186
GK + ++ NL H ++R + F C VC + L+ H++ H G Y C
Sbjct: 42 GKCYFRKENLLEHEARNCMNR--SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSS 99
Query: 187 CAKEFTRVYELNIHKK 202
C+++F + +L H
Sbjct: 100 CSQQFMQKKDLQSHMI 115
Score = 74.5 bits (184), Expect = 4e-16
Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 13/115 (11%)
Query: 123 KLHECDLCGKNFSQRNNLKRHLEEVHRT-DGMK-FECYVCSKVLATSHSLKRH---LLIH 177
EC C K F + LK H +R G K FEC C K +L H ++
Sbjct: 6 SGVECPTCHKKFLSKYYLKVH----NRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMN 61
Query: 178 NGPK-YTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAH 231
+ +TC +C + F R EL +H H E KC C + F++K +L++H
Sbjct: 62 RSEQVFTCSVCQETFRRRMELRLHMVSHTGE---MPYKCSSCSQQFMQKKDLQSH 113
Score = 51.7 bits (125), Expect = 3e-08
Identities = 34/149 (22%), Positives = 57/149 (38%), Gaps = 36/149 (24%)
Query: 177 HNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHIENN 235
+G C C K+F Y L +H + H E +C CGK + +K NL H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGE---KPFECPKCGKCYFRKENLLEH---- 54
Query: 236 HLDYSCLECKAVGEEISFDTKKNLLLHLKTKHKNVISNVYLTCLICFKTFLTEVDLGKHM 295
+ ++ + V+ TC +C +TF ++L HM
Sbjct: 55 --------------------EARNCMN--RSEQ-----VF-TCSVCQETFRRRMELRLHM 86
Query: 296 KMHMDDNQIQCRFCNKYFSRNYNLKQHMK 324
H + +C C++ F + +L+ HM
Sbjct: 87 VSHTGEMPYKCSSCSQQFMQKKDLQSHMI 115
Score = 47.1 bits (113), Expect = 1e-06
Identities = 35/142 (24%), Positives = 50/142 (35%), Gaps = 60/142 (42%)
Query: 448 QCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQ 507
+C C K F K LK H + HT GE KP +
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRK-HT-----------GE-KP------------------FE 37
Query: 508 CRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIPC 567
C C K + RK++L +H R + + + ++ FT C
Sbjct: 38 CPKCGKCYFRKENLLEHEARNCM--NRS-EQVFT-------------------------C 69
Query: 568 ELCYKTFTRKDSLRKHMKIFHT 589
+C +TF R+ LR HM HT
Sbjct: 70 SVCQETFRRRMELRLHMVS-HT 90
Score = 46.3 bits (111), Expect = 2e-06
Identities = 24/136 (17%), Positives = 40/136 (29%), Gaps = 57/136 (41%)
Query: 665 CTLCDKTFTRKDSLKKHIRIF--HTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSF 722
C C K + RK++L +H + Q C +C ++F
Sbjct: 38 CPKCGKCYFRKENLLEHEARNCMNRSEQV---------------------FTCSVCQETF 76
Query: 723 TRKDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNR 782
R+ L+ H H G P C C++
Sbjct: 77 RRRMELRLHMVS-HTGEMPYK---------------------------------CSSCSQ 102
Query: 783 TFTRNYNLKKHMKTVH 798
F + +L+ HM +H
Sbjct: 103 QFMQKKDLQSHMIKLH 118
Score = 44.0 bits (105), Expect = 1e-05
Identities = 27/134 (20%), Positives = 36/134 (26%), Gaps = 57/134 (42%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C C K F K LK H R HT +P C C K + R
Sbjct: 10 CPTCHKKFLSKYYLKVHNRK-HTGEKP---------------------FECPKCGKCYFR 47
Query: 725 KDSLKKHNRIF--HGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNR 782
K++L +H + C +C
Sbjct: 48 KENLLEHEARNCMNRSEQVFT---------------------------------CSVCQE 74
Query: 783 TFTRNYNLKKHMKT 796
TF R L+ HM +
Sbjct: 75 TFRRRMELRLHMVS 88
Score = 41.7 bits (99), Expect = 9e-05
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 22/74 (29%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C++C +TF R+ L+ H+ HT P +C C + F +
Sbjct: 69 CSVCQETFRRRMELRLHMVS-HTGEMP---------------------YKCSSCSQQFMQ 106
Query: 725 KDSLKKHNRIFHGG 738
K L+ H H G
Sbjct: 107 KKDLQSHMIKLHSG 120
Score = 41.0 bits (97), Expect = 2e-04
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 31/81 (38%)
Query: 449 CHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQC 508
C +C +TF ++ L+ HM HT GE P +C
Sbjct: 69 CSVCQETFRRRMELRLHMVS-HT-----------GE-MP------------------YKC 97
Query: 509 RICSKTFTRKDSLRKHMRRFH 529
CS+ F +K L+ HM + H
Sbjct: 98 SSCSQQFMQKKDLQSHMIKLH 118
Score = 32.5 bits (75), Expect = 0.16
Identities = 26/117 (22%), Positives = 36/117 (30%), Gaps = 38/117 (32%)
Query: 214 KCEFCGKVFLKKSNLKAH--IENNHLDYSCLEC-KAVGEEISFDTKKNLLLHLKTKHKNV 270
+C C K FL K LK H + C +C K + K+NLL H
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKC------YFRKENLLEHEARN---- 58
Query: 271 ISNVYLTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
M+ + C C + F R L+ HM + T
Sbjct: 59 -------------------------CMNRSEQVFTCSVCQETFRRRMELRLHMVSHT 90
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 81.6 bits (202), Expect = 2e-18
Identities = 40/181 (22%), Positives = 59/181 (32%), Gaps = 49/181 (27%)
Query: 23 CYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIH--------QRL 74
+ + + I + + + CD+ FS+ EL H + H
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQ--LSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60
Query: 75 KLHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRL----KLHECDL- 129
EC GK+F + L H R+ K C
Sbjct: 61 YWEECPREGKSFKAKYKLV------------------------NHIRVHTGEKPFPCPFP 96
Query: 130 -CGKNFSQRNNLKRHLEEVHRT-DGMK-FECYV--CSKVLATSHSLKRHLLIHNGPK-YT 183
CGK F++ NLK H RT G K F+C C + A S K+H+ +H K
Sbjct: 97 GCGKIFARSENLKIHK----RTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGP 152
Query: 184 C 184
Sbjct: 153 S 153
Score = 71.9 bits (177), Expect = 6e-15
Identities = 38/141 (26%), Positives = 51/141 (36%), Gaps = 17/141 (12%)
Query: 105 FSSNAELNKHSSA--IHQRLKLHECDLCGKNFSQRNNLKRHLEEVH-------RTDGMKF 155
SS + + S I + C + FS + L H+ H
Sbjct: 4 GSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWE 63
Query: 156 ECYVCSKVLATSHSLKRHLLIHNGPK-YTCEI--CAKEFTRVYELNIHKKLHEDESVANQ 212
EC K + L H+ +H G K + C C K F R L IHK+ H E
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGE---KP 120
Query: 213 LKCEF--CGKVFLKKSNLKAH 231
KCEF C + F S+ K H
Sbjct: 121 FKCEFEGCDRRFANSSDRKKH 141
Score = 67.3 bits (165), Expect = 3e-13
Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 40/139 (28%)
Query: 20 CELCYKVFESRENLMRHLKIH-------DDKESKRFKCEQCDKRFSSNAELNKHSSAIHQ 72
+ C + F + L+ H+ + ++ +C + K F + +L H +H
Sbjct: 28 KKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIR-VHT 86
Query: 73 RLKLHECDL--CGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRL----KLHE 126
K C CGK F++ NLK IH+R K +
Sbjct: 87 GEKPFPCPFPGCGKIFARSENLK------------------------IHKRTHTGEKPFK 122
Query: 127 CDL--CGKNFSQRNNLKRH 143
C+ C + F+ ++ K+H
Sbjct: 123 CEFEGCDRRFANSSDRKKH 141
Score = 53.1 bits (128), Expect = 2e-08
Identities = 34/162 (20%), Positives = 48/162 (29%), Gaps = 36/162 (22%)
Query: 160 CSKVLATSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH------EDESVANQ 212
I + C + F+ ++EL H + ++ V
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYW 62
Query: 213 LKCEFCGKVFLKKSNLKAHI-----ENNHLDYSCLECKAVGEEISFDTKKNLLLHLKTKH 267
+C GK F K L HI E C G F +NL +H +T H
Sbjct: 63 EECPREGKSFKAKYKLVNHIRVHTGEKPF------PCPFPGCGKIFARSENLKIHKRT-H 115
Query: 268 KNVISNVYLT------CLI--CFKTFLTEVDLGKHMKMHMDD 301
T C C + F D KHM +H D
Sbjct: 116 ---------TGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSD 148
Score = 50.0 bits (120), Expect = 3e-07
Identities = 25/141 (17%), Positives = 43/141 (30%), Gaps = 31/141 (21%)
Query: 187 CAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHIENNHLDYSCLECKA 246
+ + K + E + + C + F L H+ H
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQ---LSRPKKSCDRTFSTMHELVTHVTMEH---------- 49
Query: 247 VGEEISFDTKKNLLLHLKTKHKNVISNVYLTCLICFKTFLTEVDLGKHMKMHMDDNQIQC 306
+N + C K+F + L H+++H + C
Sbjct: 50 -VG---------------GPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPC 93
Query: 307 RF--CNKYFSRNYNLKQHMKT 325
F C K F+R+ NLK H +T
Sbjct: 94 PFPGCGKIFARSENLKIHKRT 114
Score = 49.6 bits (119), Expect = 3e-07
Identities = 28/134 (20%), Positives = 38/134 (28%), Gaps = 47/134 (35%)
Query: 664 PCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFT 723
P CD+TF+ L H+ + P+ N + C KSF
Sbjct: 27 PKKSCDRTFSTMHELVTHVTM-EHVGGPEQNNHVCYWEE------------CPREGKSFK 73
Query: 724 RKDSLKKHNRIFHGGADP-KVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNR 782
K L H R+ H G P C +
Sbjct: 74 AKYKLVNHIRV-HTGEKPFPCPFPG--------------------------------CGK 100
Query: 783 TFTRNYNLKKHMKT 796
F R+ NLK H +T
Sbjct: 101 IFARSENLKIHKRT 114
Score = 47.3 bits (113), Expect = 3e-06
Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 15/93 (16%)
Query: 10 KSHEYVENHMCELCYKVFESRENLMRHLKIHDDKESKRFKC--EQCDKRFSSNAELNKHS 67
+++ C K F+++ L+ H+++H + K F C C K F+ + L
Sbjct: 55 QNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGE--KPFPCPFPGCGKIFARSENLK--- 109
Query: 68 SAIHQRL----KLHECDL--CGKNFSQRNNLKR 94
IH+R K +C+ C + F+ ++ K+
Sbjct: 110 --IHKRTHTGEKPFKCEFEGCDRRFANSSDRKK 140
Score = 43.8 bits (104), Expect = 3e-05
Identities = 31/133 (23%), Positives = 39/133 (29%), Gaps = 54/133 (40%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C K+F K L HIR+ HT +P C K F R
Sbjct: 65 CPREGKSFKAKYKLVNHIRV-HTGEKPFPCPFPG-------------------CGKIFAR 104
Query: 725 KDSLKKHNRIFHGGADP-KVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNRT 783
++LK H R H G P K E C+R
Sbjct: 105 SENLKIHKRT-HTGEKPFKCEFEG--------------------------------CDRR 131
Query: 784 FTRNYNLKKHMKT 796
F + + KKHM
Sbjct: 132 FANSSDRKKHMHV 144
Score = 42.7 bits (101), Expect = 8e-05
Identities = 15/83 (18%), Positives = 24/83 (28%), Gaps = 23/83 (27%)
Query: 507 QCRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIP 566
+ C +TF+ L H+ H V +
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEH------VGGPEQNNHVCYWE----------------E 64
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C K+F K L H+++ HT
Sbjct: 65 CPREGKSFKAKYKLVNHIRV-HT 86
Score = 40.0 bits (94), Expect = 8e-04
Identities = 29/145 (20%), Positives = 40/145 (27%), Gaps = 52/145 (35%)
Query: 445 KIIQCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNA 504
C +TF+ L H+ + H G V E
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEH------------VGGPEQNNHVCYWEE------- 64
Query: 505 IIQCRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSR 564
C K+F K L H+R H T +K F
Sbjct: 65 ---CPREGKSFKAKYKLVNHIRV-H----TG-EKPF-----------------------P 92
Query: 565 IPCELCYKTFTRKDSLRKHMKIFHT 589
P C K F R ++L+ H + HT
Sbjct: 93 CPFPGCGKIFARSENLKIHKRT-HT 116
Score = 38.4 bits (90), Expect = 0.002
Identities = 21/75 (28%), Positives = 27/75 (36%), Gaps = 26/75 (34%)
Query: 664 PCTL--CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCEL--CD 719
PC C K F R ++LK H R HT +P +CE CD
Sbjct: 92 PCPFPGCGKIFARSENLKIHKRT-HTGEKP---------------------FKCEFEGCD 129
Query: 720 KSFTRKDSLKKHNRI 734
+ F KKH +
Sbjct: 130 RRFANSSDRKKHMHV 144
Score = 36.9 bits (86), Expect = 0.007
Identities = 24/96 (25%), Positives = 31/96 (32%), Gaps = 33/96 (34%)
Query: 433 HGSGSTNNTQANKIIQCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEV 492
H G N +C K+F K L H++V HT GE KP
Sbjct: 49 HVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRV-HT-----------GE-KPF---- 91
Query: 493 ILQEGKVPNNNAIIQCRI--CSKTFTRKDSLRKHMR 526
C C K F R ++L+ H R
Sbjct: 92 --------------PCPFPGCGKIFARSENLKIHKR 113
Score = 36.5 bits (85), Expect = 0.010
Identities = 5/47 (10%), Positives = 12/47 (25%)
Query: 281 CFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
+ + + C++ FS + L H+
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEH 49
Score = 29.6 bits (67), Expect = 2.2
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 777 CKICNRTFTRNYNLKKHMKTVH 798
K C+RTF+ + L H+ H
Sbjct: 28 KKSCDRTFSTMHELVTHVTMEH 49
Score = 29.6 bits (67), Expect = 2.5
Identities = 8/20 (40%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 668 CDKTFTRKDSLKKHIRIFHT 687
CD+ F KKH+ + HT
Sbjct: 128 CDRRFANSSDRKKHMHV-HT 146
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 81.5 bits (202), Expect = 8e-18
Identities = 48/223 (21%), Positives = 73/223 (32%), Gaps = 61/223 (27%)
Query: 71 HQRL----KLHECDL--CGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRL-- 122
+ L K + C CG +++ L+ H
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQA------------------------HLCKHT 38
Query: 123 --KLHECD--LCGKNFSQRNNLKRHLEEVHRT-DGMK-FEC--YVCSKVLATSHSLKRHL 174
K C C K F+ ++L RH T G K F C C T ++K+H
Sbjct: 39 GEKPFPCKEEGCEKGFTSLHHLTRH----SLTHTGEKNFTCDSDGCDLRFTTKANMKKHF 94
Query: 175 LIHNGPK---YTCEI--CAKEFTRVYELNIHKKLHEDESVANQLKC--EFCGKVFLKKSN 227
+ K Y C C K F + +L +H+ H + +C E C K F S
Sbjct: 95 NRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQ---LPYECPHEGCDKRFSLPSR 151
Query: 228 LKAH--IENNHLDYSCLECKAVGEEISFDTKKNLLLHLKTKHK 268
LK H + + C VG+ + L H+ H+
Sbjct: 152 LKRHEKVHAGYPCKKDDSCSFVGKTWT-----LYLKHVAECHQ 189
Score = 78.8 bits (195), Expect = 6e-17
Identities = 49/204 (24%), Positives = 72/204 (35%), Gaps = 53/204 (25%)
Query: 23 CYKVFESRENLMRHLKIHDDKESKRFKCEQ--CDKRFSSNAELNKHSSAIHQRLKLHECD 80
C + L HL H + K F C++ C+K F+S L +HS H K CD
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGE--KPFPCKEEGCEKGFTSLHHLTRHSL-THTGEKNFTCD 76
Query: 81 --LCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQR------LKLHECDL--C 130
C F+ + N+K+ H + ++ C C
Sbjct: 77 SDGCDLRFTTKANMKK------------------------HFNRFHNIKICVYVCHFENC 112
Query: 131 GKNFSQRNNLKRHLEEVHRT-DGMK-FEC--YVCSKVLATSHSLKRHLLIHNGPK----Y 182
GK F + N LK H + +EC C K + LKRH +H G
Sbjct: 113 GKAFKKHNQLKVH----QFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDD 168
Query: 183 TCEICAKEFTRVYELNIHKKLHED 206
+C K +T L + H+D
Sbjct: 169 SCSFVGKTWTLY--LKHVAECHQD 190
Score = 73.8 bits (182), Expect = 3e-15
Identities = 50/171 (29%), Positives = 67/171 (39%), Gaps = 42/171 (24%)
Query: 21 ELCYKVFESRENLMRHLKIHDDKESKRFKCEQ--CDKRFSSNAELNKHSSAIHQRLKLH- 77
E C K F S +L RH H + K F C+ CD RF++ A + KH + +K+
Sbjct: 48 EGCEKGFTSLHHLTRHSLTHTGE--KNFTCDSDGCDLRFTTKANMKKHFN-RFHNIKICV 104
Query: 78 -ECDL--CGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRL----KLHEC--D 128
C CGK F + N LK +HQ +EC +
Sbjct: 105 YVCHFENCGKAFKKHNQLK------------------------VHQFSHTQQLPYECPHE 140
Query: 129 LCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLAT-SHSLKRHLLIHN 178
C K FS + LKRH E+VH + CS V T + LK H
Sbjct: 141 GCDKRFSLPSRLKRH-EKVH-AGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 73.4 bits (181), Expect = 4e-15
Identities = 50/225 (22%), Positives = 68/225 (30%), Gaps = 57/225 (25%)
Query: 119 HQRL----KLHECDL--CGKNFSQRNNLKRHLEEVHRT-DGMK-FEC--YVCSKVLATSH 168
+ L K + C CG +++ L+ H G K F C C K + H
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAH----LCKHTGEKPFPCKEEGCEKGFTSLH 58
Query: 169 SLKRHLLIHNGPK-YTCE--ICAKEFTRVYELNIHKKLHEDESVANQLKCEF--CGKVFL 223
L RH L H G K +TC+ C FT + H + C F CGK F
Sbjct: 59 HLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIK-ICVYVCHFENCGKAFK 117
Query: 224 KKSNLKAH--IENNHLDYSCLECKAVGEEISFDTKKNLLLHLKTKHKNVISNVYLTCLIC 281
K + LK H L Y C C
Sbjct: 118 KHNQLKVHQFSHTQQLPYECPHEG-----------------------------------C 142
Query: 282 FKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTC 326
K F L +H K+H + C+ +H+ C
Sbjct: 143 DKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAEC 187
Score = 42.2 bits (100), Expect = 2e-04
Identities = 29/134 (21%), Positives = 39/134 (29%), Gaps = 58/134 (43%)
Query: 668 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRC--ELCDKSFTRK 725
C K F + + LK H HTQ P C E CDK F+
Sbjct: 112 CGKAFKKHNQLKVHQFS-HTQQLP---------------------YECPHEGCDKRFSLP 149
Query: 726 DSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNRTFT 785
LK+H ++ H G K D C +T+T
Sbjct: 150 SRLKRHEKV-HAGYPCKKDDS------------------------------CSFVGKTWT 178
Query: 786 RNYNLKKHMKTVHK 799
KH+ H+
Sbjct: 179 ---LYLKHVAECHQ 189
Score = 41.0 bits (97), Expect = 5e-04
Identities = 19/72 (26%), Positives = 25/72 (34%), Gaps = 24/72 (33%)
Query: 668 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCE--LCDKSFTRK 725
C+K FT L +H HT + C+ CD FT K
Sbjct: 50 CEKGFTSLHHLTRHSLT-HTGEKN---------------------FTCDSDGCDLRFTTK 87
Query: 726 DSLKKHNRIFHG 737
++KKH FH
Sbjct: 88 ANMKKHFNRFHN 99
Score = 38.3 bits (90), Expect = 0.004
Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 22/69 (31%)
Query: 668 CDKTFTRKDSLKKHIRIFHT--QNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRK 725
CD FT K ++KKH + + C K+F +
Sbjct: 80 CDLRFTTKANMKKHFNR-FHNIKICVYVCHFEN-------------------CGKAFKKH 119
Query: 726 DSLKKHNRI 734
+ LK H
Sbjct: 120 NQLKVHQFS 128
Score = 38.0 bits (89), Expect = 0.005
Identities = 23/131 (17%), Positives = 34/131 (25%), Gaps = 56/131 (42%)
Query: 668 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCE--LCDKSFTRK 725
C + + L+ H+ HT +P C+ C+K FT
Sbjct: 20 CGAAYNKNWKLQAHLCK-HTGEKP---------------------FPCKEEGCEKGFTSL 57
Query: 726 DSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNRTFT 785
L +H+ H G D C+ FT
Sbjct: 58 HHLTRHSLT-HTGEKNFTCDSDG-------------------------------CDLRFT 85
Query: 786 RNYNLKKHMKT 796
N+KKH
Sbjct: 86 TKANMKKHFNR 96
Score = 30.6 bits (70), Expect = 1.3
Identities = 35/156 (22%), Positives = 47/156 (30%), Gaps = 63/156 (40%)
Query: 452 CLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQC--R 509
C K F L +H HT GE K C
Sbjct: 50 CEKGFTSLHHLTRHSLT-HT-----------GE-KN------------------FTCDSD 78
Query: 510 ICSKTFTRKDSLRKHMRRFH-------IINDTNVKKEFTEGQINRNMLDVILKESGHEIK 562
C FT K +++KH RFH + + N K F + LK H+
Sbjct: 79 GCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHN--------QLKV--HQ-- 126
Query: 563 SRI---------PCELCYKTFTRKDSLRKHMKIFHT 589
P E C K F+ L++H K+ H
Sbjct: 127 -FSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV-HA 160
Score = 29.1 bits (66), Expect = 4.2
Identities = 26/144 (18%), Positives = 33/144 (22%), Gaps = 71/144 (49%)
Query: 452 CLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQC--R 509
C + K L+ H+ HT GE KP C
Sbjct: 20 CGAAYNKNWKLQAHLCK-HT-----------GE-KP------------------FPCKEE 48
Query: 510 ICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIPCE- 568
C K FT L +H H T K
Sbjct: 49 GCEKGFTSLHHLTRHS-LTH----TGEK----------------------------NFTC 75
Query: 569 ---LCYKTFTRKDSLRKHMKIFHT 589
C FT K +++KH
Sbjct: 76 DSDGCDLRFTTKANMKKHFNR-FH 98
Score = 28.7 bits (65), Expect = 5.5
Identities = 17/78 (21%), Positives = 22/78 (28%), Gaps = 31/78 (39%)
Query: 452 CLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQCRIC 511
C K F+ LK+H KV H K + C
Sbjct: 142 CDKRFSLPSRLKRHEKV-HAGYPCK---------KDD------------------SCSFV 173
Query: 512 SKTFTRKDSLRKHMRRFH 529
KT+T KH+ H
Sbjct: 174 GKTWT---LYLKHVAECH 188
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 72.9 bits (180), Expect = 1e-15
Identities = 42/153 (27%), Positives = 58/153 (37%), Gaps = 48/153 (31%)
Query: 44 ESKRFKC--EQCDKRFSSNAELNKHSSAIHQRL---KLHECDLCGKNFSQRNNLKRQANG 98
E + C + C K F N+ + KH ++H C CGK F + + LKR
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKH-----LHTHGPRVHVCAECGKAFVESSKLKR---- 52
Query: 99 SNVNNRFSSNAELNKHSSAIHQRL----KLHECDL--CGKNFSQRNNLKRHLEEVHRT-D 151
HQ + K +C CGK FS NL+ H R
Sbjct: 53 --------------------HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTH----VRIHT 88
Query: 152 GMK-FECYV--CSKVLATSHSLKRHLLIHNGPK 181
G + + C C+K A S +LK H+L H K
Sbjct: 89 GDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 69.9 bits (172), Expect = 1e-14
Identities = 34/142 (23%), Positives = 51/142 (35%), Gaps = 40/142 (28%)
Query: 75 KLHECDL--CGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRL---KLHECDL 129
+ C C K F + +++ H ++H C
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRK------------------------HLHTHGPRVHVCAE 39
Query: 130 CGKNFSQRNNLKRHLEEVHRT-DGMK-FECYV--CSKVLATSHSLKRHLLIHNGPK-YTC 184
CGK F + + LKRH G K F+C C K + +L+ H+ IH G + Y C
Sbjct: 40 CGKAFVESSKLKRH----QLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC 95
Query: 185 EI--CAKEFTRVYELNIHKKLH 204
C K+F + L H H
Sbjct: 96 PFDGCNKKFAQSTNLKSHILTH 117
Score = 68.3 bits (168), Expect = 6e-14
Identities = 33/136 (24%), Positives = 50/136 (36%), Gaps = 44/136 (32%)
Query: 20 CELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRL----K 75
+ C K+F + +HL H + C +C K F +++L + HQ + K
Sbjct: 10 HKGCTKMFRDNSAMRKHLHTHGPR---VHVCAECGKAFVESSKLKR-----HQLVHTGEK 61
Query: 76 LHECDL--CGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRL----KLHECDL 129
+C CGK FS NL+ H R+ + + C
Sbjct: 62 PFQCTFEGCGKRFSLDFNLRT------------------------HVRIHTGDRPYVCPF 97
Query: 130 --CGKNFSQRNNLKRH 143
C K F+Q NLK H
Sbjct: 98 DGCNKKFAQSTNLKSH 113
Score = 51.4 bits (124), Expect = 4e-08
Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 18 HMCELCYKVFESRENLMRHLKIHDDKESKRFKC--EQCDKRFSSNAELNKHSSAIHQRLK 75
H+C C K F L RH +H + K F+C E C KRFS + L H IH +
Sbjct: 35 HVCAECGKAFVESSKLKRHQLVHTGE--KPFQCTFEGCGKRFSLDFNLRTHVR-IHTGDR 91
Query: 76 LHECDL--CGKNFSQRNNLKR 94
+ C C K F+Q NLK
Sbjct: 92 PYVCPFDGCNKKFAQSTNLKS 112
Score = 42.9 bits (102), Expect = 4e-05
Identities = 28/133 (21%), Positives = 39/133 (29%), Gaps = 54/133 (40%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C C K F LK+H + HT +P C K F+
Sbjct: 37 CAECGKAFVESSKLKRHQLV-HTGEKPFQCTFEG-------------------CGKRFSL 76
Query: 725 KDSLKKHNRIFHGGADP-KVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNRT 783
+L+ H RI H G P + CN+
Sbjct: 77 DFNLRTHVRI-HTGDRPYVCPFDG--------------------------------CNKK 103
Query: 784 FTRNYNLKKHMKT 796
F ++ NLK H+ T
Sbjct: 104 FAQSTNLKSHILT 116
Score = 42.5 bits (101), Expect = 5e-05
Identities = 35/127 (27%), Positives = 50/127 (39%), Gaps = 32/127 (25%)
Query: 214 KCEF--CGKVFLKKSNLKAHIENNHLD--YSCLEC-KAVGEEISFDTKKNLLLHLKTKHK 268
C C K+F S ++ H + H + C EC K +F L H H
Sbjct: 7 ACPHKGCTKMFRDNSAMRKH-LHTHGPRVHVCAECGK------AFVESSKLKRHQLV-H- 57
Query: 269 NVISNVYLT------CLI--CFKTFLTEVDLGKHMKMHMDDNQIQCRF--CNKYFSRNYN 318
T C C K F + +L H+++H D C F CNK F+++ N
Sbjct: 58 --------TGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTN 109
Query: 319 LKQHMKT 325
LK H+ T
Sbjct: 110 LKSHILT 116
Score = 37.9 bits (89), Expect = 0.002
Identities = 33/156 (21%), Positives = 50/156 (32%), Gaps = 56/156 (35%)
Query: 155 FECYV--CSKVLATSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVAN 211
C C+K+ + ++++HL H GP+ + C C K F +L H+ +H E
Sbjct: 6 IACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEK--- 61
Query: 212 QLKCEF--CGKVFLKKSNLKAHIENNHLD-------YSCLECKAVGEEISFDTKKNLLLH 262
+C F CGK F NL H+ Y C +
Sbjct: 62 PFQCTFEGCGKRFSLDFNL-----RTHVRIHTGDRPYVCPF-----DG------------ 99
Query: 263 LKTKHKNVISNVYLTCLICFKTFLTEVDLGKHMKMH 298
C K F +L H+ H
Sbjct: 100 ------------------CNKKFAQSTNLKSHILTH 117
Score = 37.1 bits (87), Expect = 0.004
Identities = 22/130 (16%), Positives = 38/130 (29%), Gaps = 57/130 (43%)
Query: 668 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDS 727
C K F +++KH+ H + C C K+F
Sbjct: 13 CTKMFRDNSAMRKHLHT-HGP-RV---------------------HVCAECGKAFVESSK 49
Query: 728 LKKHNRIFHGGADP-KVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNRTFTR 786
LK+H + H G P + E C + F+
Sbjct: 50 LKRHQLV-HTGEKPFQCTFEG--------------------------------CGKRFSL 76
Query: 787 NYNLKKHMKT 796
++NL+ H++
Sbjct: 77 DFNLRTHVRI 86
Score = 36.7 bits (86), Expect = 0.006
Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 25/76 (32%)
Query: 668 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCEL--CDKSFTRK 725
C K F+ +L+ H+RI HT ++P C C+K F +
Sbjct: 70 CGKRFSLDFNLRTHVRI-HTGDRP---------------------YVCPFDGCNKKFAQS 107
Query: 726 DSLKKHNRIFHGGADP 741
+LK H H A
Sbjct: 108 TNLKSHILT-HAKAKN 122
Score = 36.0 bits (84), Expect = 0.011
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 277 TCLICFKTFLTEVDLGKHMKMHMDDNQIQCRF--CNKYFSRNYNLKQHMKTCT 327
C C K F+ L +H +H + QC F C K FS ++NL+ H++ T
Sbjct: 36 VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHT 88
Score = 35.6 bits (83), Expect = 0.014
Identities = 17/79 (21%), Positives = 24/79 (30%), Gaps = 33/79 (41%)
Query: 511 CSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIPCELC 570
C+K F ++RKH+ T G H C C
Sbjct: 13 CTKMFRDNSAMRKHLH--------------THG------------PRVHV------CAEC 40
Query: 571 YKTFTRKDSLRKHMKIFHT 589
K F L++H + HT
Sbjct: 41 GKAFVESSKLKRHQLV-HT 58
Score = 35.6 bits (83), Expect = 0.014
Identities = 32/146 (21%), Positives = 43/146 (29%), Gaps = 67/146 (45%)
Query: 448 QCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQ 507
C C K F + LK+H V HT GE KP Q
Sbjct: 36 VCAECGKAFVESSKLKRHQLV-HT-----------GE-KP------------------FQ 64
Query: 508 CRI--CSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRI 565
C C K F+ +LR H+ R H T + +
Sbjct: 65 CTFEGCGKRFSLDFNLRTHV-RIH----TG-DRPYV------------------------ 94
Query: 566 PCEL--CYKTFTRKDSLRKHMKIFHT 589
C C K F + +L+ H+ H
Sbjct: 95 -CPFDGCNKKFAQSTNLKSHILT-HA 118
Score = 31.7 bits (73), Expect = 0.34
Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 277 TCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
C K F + KH+ H C C K F + LK+H T
Sbjct: 9 PHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHT 58
Score = 30.9 bits (71), Expect = 0.51
Identities = 15/82 (18%), Positives = 23/82 (28%), Gaps = 35/82 (42%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNE 774
+ C K F +++KH HG P+V
Sbjct: 10 HKGCTKMFRDNSAMRKHLHT-HG---PRVHV----------------------------- 36
Query: 775 ILCKICNRTFTRNYNLKKHMKT 796
C C + F + LK+H
Sbjct: 37 --CAECGKAFVESSKLKRHQLV 56
Score = 27.5 bits (62), Expect = 8.8
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 566 PCELCYKTFTRKDSLRKHMKI 586
P + C K F ++RKH+
Sbjct: 9 PHKGCTKMFRDNSAMRKHLHT 29
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 69.8 bits (172), Expect = 1e-14
Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 34/125 (27%)
Query: 20 CELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
C+ C K F + RH+ +H + + C C K+F L H IH +K +EC
Sbjct: 13 CQ-CGKSFTHKSQRDRHMSMHLGL--RPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYEC 68
Query: 80 DLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRL----KLHECDLCGKNFS 135
++C K F R++ H+ + K +E +N +
Sbjct: 69 NICAKRFMWRDSF--------------------------HRHVTSCTKSYEAAKAEQNTT 102
Query: 136 QRNNL 140
+ +
Sbjct: 103 EASGP 107
Score = 66.3 bits (163), Expect = 2e-13
Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 11/115 (9%)
Query: 118 IHQRLKLHECDLCGKNFSQRNNLKRHLEEVHRTDGMK-FECYVCSKVLATSHSLKRHLLI 176
KL+ C CGK+F+ ++ RH +H G++ + C VC K H L H+ I
Sbjct: 4 GSSGDKLYPCQ-CGKSFTHKSQRDRH-MSMHL--GLRPYGCGVCGKKFKMKHHLVGHMKI 59
Query: 177 HNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKA 230
H G K Y C ICAK F H+ + + + + S +
Sbjct: 60 HTGIKPYECNICAKRFMWRDSF--HRHVTSCT---KSYEAAKAEQNTTEASGPSS 109
Score = 63.2 bits (155), Expect = 2e-12
Identities = 27/131 (20%), Positives = 47/131 (35%), Gaps = 38/131 (29%)
Query: 70 IHQRLKLHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRL----KLH 125
KL+ C CGK+F+ ++ H + + +
Sbjct: 4 GSSGDKLYPCQ-CGKSFTHKSQR------------------------DRHMSMHLGLRPY 38
Query: 126 ECDLCGKNFSQRNNLKRHLEEVHRT-DGMK-FECYVCSKVLATSHSLKRHLLIHNGPK-Y 182
C +CGK F +++L H + G+K +EC +C+K S RH + + K Y
Sbjct: 39 GCGVCGKKFKMKHHLVGH----MKIHTGIKPYECNICAKRFMWRDSFHRH--VTSCTKSY 92
Query: 183 TCEICAKEFTR 193
+ T
Sbjct: 93 EAAKAEQNTTE 103
Score = 37.4 bits (88), Expect = 0.002
Identities = 19/74 (25%), Positives = 26/74 (35%), Gaps = 23/74 (31%)
Query: 668 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDS 727
C K+FT K +H+ + H +P C +C K F K
Sbjct: 15 CGKSFTHKSQRDRHMSM-HLGLRP---------------------YGCGVCGKKFKMKHH 52
Query: 728 LKKHNRIFHGGADP 741
L H +I H G P
Sbjct: 53 LVGHMKI-HTGIKP 65
Score = 35.5 bits (83), Expect = 0.012
Identities = 18/77 (23%), Positives = 25/77 (32%), Gaps = 25/77 (32%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C +C K F K L H++I HT +P C +C K F
Sbjct: 40 CGVCGKKFKMKHHLVGHMKI-HTGIKP---------------------YECNICAKRFMW 77
Query: 725 KDSLKKHNRIFHGGADP 741
+DS H +
Sbjct: 78 RDSF--HRHV-TSCTKS 91
Score = 33.2 bits (77), Expect = 0.064
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 281 CFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
C K+F + +HM MH+ C C K F ++L HMK T
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHT 61
Score = 32.8 bits (76), Expect = 0.11
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 278 CLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCTK 328
C +C K F + L HMK+H +C C K F + +H+ +CTK
Sbjct: 40 CGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTSCTK 90
Score = 32.4 bits (75), Expect = 0.13
Identities = 17/75 (22%), Positives = 23/75 (30%), Gaps = 31/75 (41%)
Query: 452 CLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQCRIC 511
C K+F K +HM + H G +P C +C
Sbjct: 15 CGKSFTHKSQRDRHMSM-HL-----------GL-RP------------------YGCGVC 43
Query: 512 SKTFTRKDSLRKHMR 526
K F K L HM+
Sbjct: 44 GKKFKMKHHLVGHMK 58
Score = 30.9 bits (71), Expect = 0.42
Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 31/78 (39%)
Query: 448 QCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQ 507
C +C K F K L HMK+ HT G KP +
Sbjct: 39 GCGVCGKKFKMKHHLVGHMKI-HT-----------GI-KP------------------YE 67
Query: 508 CRICSKTFTRKDSLRKHM 525
C IC+K F +DS +H+
Sbjct: 68 CNICAKRFMWRDSFHRHV 85
Score = 30.9 bits (71), Expect = 0.52
Identities = 21/81 (25%), Positives = 26/81 (32%), Gaps = 36/81 (44%)
Query: 511 CSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIP--CE 568
C K+FT K +HM H ++ P C
Sbjct: 15 CGKSFTHKSQRDRHMS-MH----LGLR----------------------------PYGCG 41
Query: 569 LCYKTFTRKDSLRKHMKIFHT 589
+C K F K L HMKI HT
Sbjct: 42 VCGKKFKMKHHLVGHMKI-HT 61
Score = 30.1 bits (69), Expect = 0.86
Identities = 18/82 (21%), Positives = 25/82 (30%), Gaps = 35/82 (42%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNE 774
C+ C KSFT K +H + H G P
Sbjct: 13 CQ-CGKSFTHKSQRDRHMSM-HLGLRPYG------------------------------- 39
Query: 775 ILCKICNRTFTRNYNLKKHMKT 796
C +C + F ++L HMK
Sbjct: 40 --CGVCGKKFKMKHHLVGHMKI 59
Score = 30.1 bits (69), Expect = 1.0
Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 20 CELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELN 64
C +C K F R++ RH + K ++ + ++ + + +
Sbjct: 68 CNICAKRFMWRDSFHRH--VTSCT--KSYEAAKAEQNTTEASGPS 108
Score = 29.3 bits (67), Expect = 1.4
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C+ C K+FT K +HM + H
Sbjct: 13 CQ-CGKSFTHKSQRDRHMSM-HL 33
Score = 27.4 bits (62), Expect = 7.6
Identities = 8/64 (12%), Positives = 17/64 (26%), Gaps = 24/64 (37%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C +C K F +DS +H+ + + +++ T
Sbjct: 68 CNICAKRFMWRDSFHRHV---TSCTKS---------------------YEAAKAEQNTTE 103
Query: 725 KDSL 728
Sbjct: 104 ASGP 107
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 69.1 bits (170), Expect = 3e-14
Identities = 43/144 (29%), Positives = 58/144 (40%), Gaps = 41/144 (28%)
Query: 46 KRFKCEQ--CDKRFSSNAELNKHSSAIHQRLKLHECDL--CGKNFSQRNNLKRQANGSNV 101
+ F C C+KR+ + L HS H K ++CD C + FS+ + LKR
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSR-KHTGEKPYQCDFKDCERRFSRSDQLKR------- 56
Query: 102 NNRFSSNAELNKHSSAIHQRL----KLHECDLCGKNFSQRNNLKRHLEEVHRT-DGMK-F 155
HQR K +C C + FS+ ++LK H RT G K F
Sbjct: 57 -----------------HQRRHTGVKPFQCKTCQRKFSRSDHLKTH----TRTHTGEKPF 95
Query: 156 ECYV--CSKVLATSHSLKRHLLIH 177
C C K A S L RH +H
Sbjct: 96 SCRWPSCQKKFARSDELVRHHNMH 119
Score = 66.4 bits (163), Expect = 2e-13
Identities = 33/136 (24%), Positives = 54/136 (39%), Gaps = 37/136 (27%)
Query: 18 HMCE--LCYKVFESRENLMRHLKIHDDKESKRFKCE--QCDKRFSSNAELNKHSSAIHQR 73
MC C K + +L H + H + K ++C+ C++RFS + +L +H H
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGE--KPYQCDFKDCERRFSRSDQLKRHQR-RHTG 63
Query: 74 LKLHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRL----KLHECDL 129
+K +C C + FS+ ++LK H R K C
Sbjct: 64 VKPFQCKTCQRKFSRSDHLKT------------------------HTRTHTGEKPFSCRW 99
Query: 130 --CGKNFSQRNNLKRH 143
C K F++ + L RH
Sbjct: 100 PSCQKKFARSDELVRH 115
Score = 50.2 bits (121), Expect = 1e-07
Identities = 28/130 (21%), Positives = 40/130 (30%), Gaps = 56/130 (43%)
Query: 668 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDS 727
C++ F+R D LK+H R HT +P +C+ C + F+R D
Sbjct: 44 CERRFSRSDQLKRHQRR-HTGVKP---------------------FQCKTCQRKFSRSDH 81
Query: 728 LKKHNRIFHGGADP-KVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNRTFTR 786
LK H R H G P C + F R
Sbjct: 82 LKTHTRT-HTGEKPFSCRWPS--------------------------------CQKKFAR 108
Query: 787 NYNLKKHMKT 796
+ L +H
Sbjct: 109 SDELVRHHNM 118
Score = 48.7 bits (117), Expect = 4e-07
Identities = 29/129 (22%), Positives = 44/129 (34%), Gaps = 54/129 (41%)
Query: 668 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDS 727
C+K + + L+ H R HT +P + + C++ F+R D
Sbjct: 14 CNKRYFKLSHLQMHSRK-HTGEKPYQCDFKD-------------------CERRFSRSDQ 53
Query: 728 LKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNRTFTRN 787
LK+H R H G P CK C R F+R+
Sbjct: 54 LKRHQRR-HTGVKPFQ---------------------------------CKTCQRKFSRS 79
Query: 788 YNLKKHMKT 796
+LK H +T
Sbjct: 80 DHLKTHTRT 88
Score = 47.1 bits (113), Expect = 1e-06
Identities = 33/154 (21%), Positives = 49/154 (31%), Gaps = 51/154 (33%)
Query: 155 FEC--YVCSKVLATSHSLKRHLLIHNGPK-YTCEI--CAKEFTRVYELNIHKKLHEDESV 209
F C C+K L+ H H G K Y C+ C + F+R +L H++ H
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV-- 64
Query: 210 ANQLKCEFCGKVFLKKSNLKAHI-----ENNHLDYSCLECKAVGEEISFDTKKNLLLHLK 264
+C+ C + F + +LK H E +SC
Sbjct: 65 -KPFQCKTCQRKFSRSDHLKTHTRTHTGEK---PFSC----------------------- 97
Query: 265 TKHKNVISNVYLTCLICFKTFLTEVDLGKHMKMH 298
C K F +L +H MH
Sbjct: 98 ------------RWPSCQKKFARSDELVRHHNMH 119
Score = 45.6 bits (109), Expect = 4e-06
Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 24/72 (33%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCEL--CDKSF 722
C C + F+R D LK H R HT +P C C K F
Sbjct: 69 CKTCQRKFSRSDHLKTHTRT-HTGEKP---------------------FSCRWPSCQKKF 106
Query: 723 TRKDSLKKHNRI 734
R D L +H+ +
Sbjct: 107 ARSDELVRHHNM 118
Score = 43.7 bits (104), Expect = 2e-05
Identities = 28/155 (18%), Positives = 47/155 (30%), Gaps = 54/155 (34%)
Query: 182 YTCE--ICAKEFTRVYELNIHKKLHEDESVANQLKCEF--CGKVFLKKSNLKAHI----- 232
+ C C K + ++ L +H + H E +C+F C + F + LK H
Sbjct: 7 FMCAYPGCNKRYFKLSHLQMHSRKHTGE---KPYQCDFKDCERRFSRSDQLKRHQRRHTG 63
Query: 233 ENNHLDYSCLECKAVGEEISFDTKKNLLLHLKTKHKNVISNVYLTCLICFKTFLTEVDLG 292
+ C C+ + F L
Sbjct: 64 VK---PFQCKTCQ-------------------------------------RKFSRSDHLK 83
Query: 293 KHMKMHMDDNQIQCRF--CNKYFSRNYNLKQHMKT 325
H + H + CR+ C K F+R+ L +H
Sbjct: 84 THTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNM 118
Score = 43.3 bits (103), Expect = 3e-05
Identities = 33/143 (23%), Positives = 47/143 (32%), Gaps = 71/143 (49%)
Query: 452 CLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKP---NILEVILQEGKVPNNNAIIQC 508
C K + K L+ H + HT GE KP + +
Sbjct: 14 CNKRYFKLSHLQMHSRK-HT-----------GE-KPYQCDFKD----------------- 43
Query: 509 RICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIP-- 566
C + F+R D L++H RR H T VK P
Sbjct: 44 --CERRFSRSDQLKRHQRR-H----TGVK----------------------------PFQ 68
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C+ C + F+R D L+ H + HT
Sbjct: 69 CKTCQRKFSRSDHLKTHTRT-HT 90
Score = 42.1 bits (100), Expect = 7e-05
Identities = 32/139 (23%), Positives = 43/139 (30%), Gaps = 68/139 (48%)
Query: 452 CLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQCRIC 511
C + F++ D LK+H + HT G KP QC+ C
Sbjct: 44 CERRFSRSDQLKRHQRR-HT-----------GV-KPF------------------QCKTC 72
Query: 512 SKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIP--CEL 569
+ F+R D L+ H R H T K P C
Sbjct: 73 QRKFSRSDHLKTHTRT-H----TGEK----------------------------PFSCRW 99
Query: 570 --CYKTFTRKDSLRKHMKI 586
C K F R D L +H +
Sbjct: 100 PSCQKKFARSDELVRHHNM 118
Score = 39.8 bits (94), Expect = 4e-04
Identities = 23/81 (28%), Positives = 28/81 (34%), Gaps = 33/81 (40%)
Query: 448 QCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQ 507
QC C + F++ D LK H + HT GE KP
Sbjct: 68 QCKTCQRKFSRSDHLKTHTRT-HT-----------GE-KP------------------FS 96
Query: 508 CRI--CSKTFTRKDSLRKHMR 526
CR C K F R D L +H
Sbjct: 97 CRWPSCQKKFARSDELVRHHN 117
Score = 31.0 bits (71), Expect = 0.52
Identities = 17/87 (19%), Positives = 26/87 (29%), Gaps = 38/87 (43%)
Query: 714 RCE--LCDKSFTRKDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSI 771
C C+K + + L+ H+R H G P
Sbjct: 8 MCAYPGCNKRYFKLSHLQMHSRK-HTGEKPYQ---------------------------- 38
Query: 772 TNEILCKI--CNRTFTRNYNLKKHMKT 796
C C R F+R+ LK+H +
Sbjct: 39 -----CDFKDCERRFSRSDQLKRHQRR 60
Score = 27.5 bits (62), Expect = 8.6
Identities = 7/25 (28%), Positives = 11/25 (44%), Gaps = 3/25 (12%)
Query: 567 CE--LCYKTFTRKDSLRKHMKIFHT 589
C C K + + L+ H + HT
Sbjct: 9 CAYPGCNKRYFKLSHLQMHSRK-HT 32
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 67.1 bits (165), Expect = 5e-14
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 122 LKLHECDLCGKNFSQRNNLKRHLEEVHRT-DGMK-FECYVCSKVLATSHSLKRHLLIHNG 179
+K +C +C +NFS+ ++L H RT G K F C +C + A S KRH I +
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTH----IRTHTGEKPFACDICGRKFARSDERKRHRDIQHI 56
Query: 180 PKYTCEICAKEFTRVYELNIHKK 202
+ + ++ Y L
Sbjct: 57 LPILEDKVEELLSKNYHLENEVA 79
Score = 65.2 bits (160), Expect = 3e-13
Identities = 21/105 (20%), Positives = 35/105 (33%), Gaps = 36/105 (34%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQRL----KLHECDLCGKNFSQRNNLKRQANGSNV 101
K F+C C + FS + L H R K CD+CG+ F++ + KR
Sbjct: 2 KPFQCRICMRNFSRSDHLTT-----HIRTHTGEKPFACDICGRKFARSDERKR------- 49
Query: 102 NNRFSSNAELNKHSSAIHQRL---KLHECDLCGKNFSQRNNLKRH 143
H+ + D + S+ +L+
Sbjct: 50 -----------------HRDIQHILPILEDKVEELLSKNYHLENE 77
Score = 60.6 bits (148), Expect = 1e-11
Identities = 21/116 (18%), Positives = 42/116 (36%), Gaps = 36/116 (31%)
Query: 74 LKLHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRL----KLHECDL 129
+K +C +C +NFS+ ++L H R K CD+
Sbjct: 1 MKPFQCRICMRNFSRSDHLTT------------------------HIRTHTGEKPFACDI 36
Query: 130 CGKNFSQRNNLKRHLEEVHRTDGMK-FECYVCSKVLATSHSLKRHLL---IHNGPK 181
CG+ F++ + KRH + ++L+ ++ L+ + G +
Sbjct: 37 CGRKFARSDERKRH----RDIQHILPILEDKVEELLSKNYHLENEVARLKKLVGER 88
Score = 60.6 bits (148), Expect = 1e-11
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVANQL 213
F+C +C + + S L H+ H G K + C+IC ++F R E H+ + +
Sbjct: 4 FQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILP----I 59
Query: 214 KCEFCGKVFLKKSNLKAHI 232
+ ++ K +L+ +
Sbjct: 60 LEDKVEELLSKNYHLENEV 78
Score = 59.8 bits (146), Expect = 2e-11
Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 10/78 (12%)
Query: 20 CELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRL---KL 76
C +C + F ++L H++ H + K F C+ C ++F+ + E + H+ +
Sbjct: 6 CRICMRNFSRSDHLTTHIRTHTGE--KPFACDICGRKFARSDERKR-----HRDIQHILP 58
Query: 77 HECDLCGKNFSQRNNLKR 94
D + S+ +L+
Sbjct: 59 ILEDKVEELLSKNYHLEN 76
Score = 50.6 bits (122), Expect = 4e-08
Identities = 26/131 (19%), Positives = 39/131 (29%), Gaps = 57/131 (43%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C +C + F+R D L HIR HT +P C++C + F R
Sbjct: 6 CRICMRNFSRSDHLTTHIRT-HTGEKP---------------------FACDICGRKFAR 43
Query: 725 KDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNRTF 784
D K+H I P IL
Sbjct: 44 SDERKRHRDI-QH----------------------------ILP------ILEDKVEELL 68
Query: 785 TRNYNLKKHMK 795
++NY+L+ +
Sbjct: 69 SKNYHLENEVA 79
Score = 45.2 bits (108), Expect = 3e-06
Identities = 22/144 (15%), Positives = 36/144 (25%), Gaps = 65/144 (45%)
Query: 448 QCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQ 507
QC IC++ F++ D L H++ HT GE KP
Sbjct: 5 QCRICMRNFSRSDHLTTHIRT-HT-----------GE-KP------------------FA 33
Query: 508 CRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIPC 567
C IC + F R D ++H
Sbjct: 34 CDICGRKFARSDERKRHRD-------IQHILPIL-------------------------E 61
Query: 568 ELCYKTFTRKDSLRKHMKIF--HT 589
+ + ++ L +
Sbjct: 62 DKVEELLSKNYHLENEVARLKKLV 85
Score = 41.3 bits (98), Expect = 7e-05
Identities = 19/83 (22%), Positives = 26/83 (31%), Gaps = 34/83 (40%)
Query: 714 RCELCDKSFTRKDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITN 773
+C +C ++F+R D L H R H G P
Sbjct: 5 QCRICMRNFSRSDHLTTHIRT-HTGEKPFA------------------------------ 33
Query: 774 EILCKICNRTFTRNYNLKKHMKT 796
C IC R F R+ K+H
Sbjct: 34 ---CDICGRKFARSDERKRHRDI 53
Score = 37.5 bits (88), Expect = 0.001
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 277 TCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKT 325
C IC + F L H++ H + C C + F+R+ K+H
Sbjct: 5 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 35.5 bits (83), Expect = 0.008
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 277 TCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMK 324
C IC + F + +H + I + S+NY+L+ +
Sbjct: 33 ACDICGRKFARSDERKRHRDIQHILP-ILEDKVEELLSKNYHLENEVA 79
Score = 27.5 bits (62), Expect = 5.3
Identities = 1/30 (3%), Positives = 7/30 (23%), Gaps = 5/30 (16%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHT 694
++ ++ L+ +
Sbjct: 61 EDKVEELLSKNYHLENEVARLKK-----LV 85
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 67.5 bits (166), Expect = 7e-14
Identities = 26/120 (21%), Positives = 41/120 (34%), Gaps = 39/120 (32%)
Query: 32 NLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRL----KLHECDLCGKNFS 87
K K F C+ C + F+ + L IH+R + + CD+C K F
Sbjct: 4 GSSGGRLPSKTK--KEFICKFCGRHFTKSYNL-----LIHERTHTDERPYTCDICHKAFR 56
Query: 88 QRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRL----KLHECDLCGKNFSQRNNLKRH 143
++++L H+ + K +C CGK F Q L H
Sbjct: 57 RQDHL------------------------RDHRYIHSKEKPFKCQECGKGFCQSRTLAVH 92
Score = 65.5 bits (161), Expect = 3e-13
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRHLEEVHRT-DGMK-FECYVCSKVLATSHSL 170
+ + K C CG++F++ NL H RT + + C +C K L
Sbjct: 6 SGGRLPSKTKKEFICKFCGRHFTKSYNLLIH----ERTHTDERPYTCDICHKAFRRQDHL 61
Query: 171 KRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
+ H IH+ K + C+ C K F + L +HK LH
Sbjct: 62 RDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 62.1 bits (152), Expect = 4e-12
Identities = 27/127 (21%), Positives = 45/127 (35%), Gaps = 39/127 (30%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRL-- 122
+ + K C CG++F++ NL IH+R
Sbjct: 6 SGGRLPSKTKKEFICKFCGRHFTKSYNL------------------------LIHERTHT 41
Query: 123 --KLHECDLCGKNFSQRNNLKRHLEEVHRT-DGMK-FECYVCSKVLATSHSLKRHLLIHN 178
+ + CD+C K F ++++L+ H K F+C C K S +L H +H
Sbjct: 42 DERPYTCDICHKAFRRQDHLRDH----RYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHM 97
Query: 179 GPK-YTC 184
T
Sbjct: 98 QTSSPTA 104
Score = 59.8 bits (146), Expect = 4e-11
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Query: 20 CELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
C+ C + F NL+ H + H D+ + + C+ C K F L H IH + K +C
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDE--RPYTCDICHKAFRRQDHLRDHRY-IHSKEKPFKC 76
Query: 80 DLCGKNFSQRNNL 92
CGK F Q L
Sbjct: 77 QECGKGFCQSRTL 89
Score = 51.7 bits (125), Expect = 2e-08
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 167 SHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKK 225
S L K + C+ C + FT+ Y L IH++ H DE C+ C K F ++
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDE---RPYTCDICHKAFRRQ 58
Query: 226 SNLKAH 231
+L+ H
Sbjct: 59 DHLRDH 64
Score = 39.3 bits (93), Expect = 4e-04
Identities = 27/133 (20%), Positives = 40/133 (30%), Gaps = 58/133 (43%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C C + FT+ +L H R HT +P C++C K+F R
Sbjct: 20 CKFCGRHFTKSYNLLIHERT-HTDERP---------------------YTCDICHKAFRR 57
Query: 725 KDSLKKHNRIFHGGADP-KVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNRT 783
+D L+ H I H P K C+ C +
Sbjct: 58 QDHLRDHRYI-HSKEKPFK----------------------------------CQECGKG 82
Query: 784 FTRNYNLKKHMKT 796
F ++ L H
Sbjct: 83 FCQSRTLAVHKTL 95
Score = 35.5 bits (83), Expect = 0.009
Identities = 31/148 (20%), Positives = 43/148 (29%), Gaps = 67/148 (45%)
Query: 448 QCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQ 507
C C + F K +L H + HT E +P
Sbjct: 19 ICKFCGRHFTKSYNLLIHERT-HT-----------DE-RP------------------YT 47
Query: 508 CRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIP- 566
C IC K F R+D LR H R H + K P
Sbjct: 48 CDICHKAFRRQDHLRDH-RYIH----SKEK----------------------------PF 74
Query: 567 -CELCYKTFTRKDSLRKHMKIFHTRRNP 593
C+ C K F + +L H + H + +
Sbjct: 75 KCQECGKGFCQSRTLAVHKTL-HMQTSS 101
Score = 32.8 bits (76), Expect = 0.096
Identities = 25/134 (18%), Positives = 40/134 (29%), Gaps = 48/134 (35%)
Query: 197 LNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAH--IENNHLD---YSCLECKAVGEEI 251
+ + + + + C+FCG+ F K NL H H D Y+C C
Sbjct: 5 SSGGRLPSKTK---KEFICKFCGRHFTKSYNLLIHERT---HTDERPYTCDICH------ 52
Query: 252 SFDTKKNLLLHLKTKHKNVISNVYLTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNK 311
K F + L H +H + +C+ C K
Sbjct: 53 -------------------------------KAFRRQDHLRDHRYIHSKEKPFKCQECGK 81
Query: 312 YFSRNYNLKQHMKT 325
F ++ L H
Sbjct: 82 GFCQSRTLAVHKTL 95
Score = 28.9 bits (66), Expect = 1.9
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 278 CLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
C C + F +L H + H D+ C C+K F R +L+ H +
Sbjct: 20 CKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHS 69
Score = 28.2 bits (64), Expect = 3.5
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQP 691
C C K F + +L H + H Q
Sbjct: 76 CQECGKGFCQSRTLAVHKTL-HMQTSS 101
Score = 27.8 bits (63), Expect = 4.5
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 290 DLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
+ C+FC ++F+++YNL H +T T
Sbjct: 4 GSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHT 41
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 67.1 bits (165), Expect = 7e-14
Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 31/109 (28%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRQANGSNVNNRF 105
CE C K F LN+H H K + C +CG F +++ +
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKL-SHSGEKPYSCPVCGLRFKRKDRM------------- 51
Query: 106 SSNAELNKHSSAIHQR------LKLHECDLCGKNFSQRNNLKRHLEEVH 148
+ H R K + C CGK FS+ ++L H+++VH
Sbjct: 52 -----------SYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 63.3 bits (155), Expect = 1e-12
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 2/83 (2%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVANQL 213
C +C K+ + L RH L H+G K Y+C +C F R ++ H + H+
Sbjct: 8 VACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV-GKPY 66
Query: 214 KCEFCGKVFLKKSNLKAHIENNH 236
C+ CGK F + +L HI+ H
Sbjct: 67 ICQSCGKGFSRPDHLNGHIKQVH 89
Score = 60.2 bits (147), Expect = 2e-11
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
Query: 20 CELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIH--QRLKLH 77
CE+C K+F +L RH H + K + C C RF ++ H H K +
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGE--KPYSCPVCGLRFKRKDRMSYHVR-SHDGSVGKPY 66
Query: 78 ECDLCGKNFSQRNNLKR 94
C CGK FS+ ++L
Sbjct: 67 ICQSCGKGFSRPDHLNG 83
Score = 51.3 bits (124), Expect = 3e-08
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 20 CELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIH 71
C +C F+ ++ + H++ HD K + C+ C K FS LN H +H
Sbjct: 38 CPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 49.4 bits (119), Expect = 1e-07
Identities = 30/98 (30%), Positives = 36/98 (36%), Gaps = 17/98 (17%)
Query: 177 HNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHI--- 232
+G CEIC K F VY LN HK H E C CG F +K + H+
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHKLSHSGE---KPYSCPVCGLRFKRKDRMSYHVRSH 58
Query: 233 --ENNHLDYSCLEC-KAVGEEISFDTKKNLLLHLKTKH 267
Y C C K F +L H+K H
Sbjct: 59 DGSVGK-PYICQSCGKG------FSRPDHLNGHIKQVH 89
Score = 47.1 bits (113), Expect = 8e-07
Identities = 29/134 (21%), Positives = 41/134 (30%), Gaps = 54/134 (40%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C +C K F L +H H+ +P C +C F R
Sbjct: 10 CEICGKIFRDVYHLNRHKLS-HSGEKP---------------------YSCPVCGLRFKR 47
Query: 725 KDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNRTF 784
KD + H R H G+ K P C+ C + F
Sbjct: 48 KDRMSYHVRS-HDGSVGK-------------------------PYI------CQSCGKGF 75
Query: 785 TRNYNLKKHMKTVH 798
+R +L H+K VH
Sbjct: 76 SRPDHLNGHIKQVH 89
Score = 45.9 bits (110), Expect = 2e-06
Identities = 33/142 (23%), Positives = 45/142 (31%), Gaps = 60/142 (42%)
Query: 448 QCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQ 507
C IC K F L +H H+ GE KP
Sbjct: 9 ACEICGKIFRDVYHLNRHKLS-HS-----------GE-KP------------------YS 37
Query: 508 CRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIPC 567
C +C F RKD + H+R +D +V K + C
Sbjct: 38 CPVCGLRFKRKDRMSYHVR----SHDGSVGKPYI-------------------------C 68
Query: 568 ELCYKTFTRKDSLRKHMKIFHT 589
+ C K F+R D L H+K H+
Sbjct: 69 QSCGKGFSRPDHLNGHIKQVHS 90
Score = 41.7 bits (99), Expect = 5e-05
Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 24/76 (31%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT--QNQPQHTNVIEVALGARANAAFIDRIRCELCDKSF 722
C +C F RKD + H+R H +P C+ C K F
Sbjct: 38 CPVCGLRFKRKDRMSYHVRS-HDGSVGKP---------------------YICQSCGKGF 75
Query: 723 TRKDSLKKHNRIFHGG 738
+R D L H + H G
Sbjct: 76 SRPDHLNGHIKQVHSG 91
Score = 34.8 bits (81), Expect = 0.015
Identities = 13/51 (25%), Positives = 19/51 (37%)
Query: 277 TCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
C IC K F L +H H + C C F R + H+++
Sbjct: 9 ACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 59
Score = 30.9 bits (71), Expect = 0.35
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 277 TCLICFKTFLTEVDLGKHMKMHMDDNQ--IQCRFCNKYFSRNYNLKQHMK 324
+C +C F + + H++ H C+ C K FSR +L H+K
Sbjct: 37 SCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIK 86
Score = 30.2 bits (69), Expect = 0.60
Identities = 15/83 (18%), Positives = 22/83 (26%), Gaps = 34/83 (40%)
Query: 714 RCELCDKSFTRKDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITN 773
CE+C K F L +H H G P
Sbjct: 9 ACEICGKIFRDVYHLNRHKLS-HSGEKPYS------------------------------ 37
Query: 774 EILCKICNRTFTRNYNLKKHMKT 796
C +C F R + H+++
Sbjct: 38 ---CPVCGLRFKRKDRMSYHVRS 57
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 67.1 bits (165), Expect = 7e-14
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 7/85 (8%)
Query: 123 KLHECDLCGKNFSQRNNLKRHLEEVHRT-DGMK-FECYVCSKVLATSHSLKRHLLIHNGP 180
H+C++CGK FS+++ LK H R G+K ++C C A S SL +HL IH+
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTH----MRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE 62
Query: 181 K-YTCEICAKEFTRVYELNIHKKLH 204
+ + C+IC +L +H + H
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSH 87
Score = 63.6 bits (156), Expect = 1e-12
Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 29/102 (28%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRQANGSNVNNRF 105
KCE C K FS +L H H +K ++C C + ++L +
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNK----------- 54
Query: 106 SSNAELNKHSSAIHQRL----KLHECDLCGKNFSQRNNLKRH 143
H R+ + +C +C + L H
Sbjct: 55 -------------HLRIHSDERPFKCQICPYASRNSSQLTVH 83
Score = 61.3 bits (150), Expect = 6e-12
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 18 HMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLH 77
H CE+C K F ++ L H++ H K +KC+ CD + ++ LNKH IH +
Sbjct: 9 HKCEVCGKCFSRKDKLKTHMRCHTGV--KPYKCKTCDYAAADSSSLNKH-LRIHSDERPF 65
Query: 78 ECDLCGKNFSQRNNLKR 94
+C +C + L
Sbjct: 66 KCQICPYASRNSSQLTV 82
Score = 61.3 bits (150), Expect = 7e-12
Identities = 26/117 (22%), Positives = 42/117 (35%), Gaps = 35/117 (29%)
Query: 75 KLHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRL----KLHECDLC 130
H+C++CGK FS+++ LK H R K ++C C
Sbjct: 7 GPHKCEVCGKCFSRKDKLKT------------------------HMRCHTGVKPYKCKTC 42
Query: 131 GKNFSQRNNLKRHLEEVHRT-DGMK-FECYVCSKVLATSHSLKRHLLIHNGPK-YTC 184
+ ++L +H R + F+C +C S L HL H G +
Sbjct: 43 DYAAADSSSLNKH----LRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 48.6 bits (117), Expect = 2e-07
Identities = 31/133 (23%), Positives = 43/133 (32%), Gaps = 58/133 (43%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C +C K F+RKD LK H+R HT +P +C+ CD +
Sbjct: 11 CEVCGKCFSRKDKLKTHMRC-HTGVKP---------------------YKCKTCDYAAAD 48
Query: 725 KDSLKKHNRIFHGGADP-KVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNRT 783
SL KH RI H P K C+IC
Sbjct: 49 SSSLNKHLRI-HSDERPFK----------------------------------CQICPYA 73
Query: 784 FTRNYNLKKHMKT 796
+ L H+++
Sbjct: 74 SRNSSQLTVHLRS 86
Score = 39.7 bits (94), Expect = 3e-04
Identities = 30/144 (20%), Positives = 45/144 (31%), Gaps = 67/144 (46%)
Query: 448 QCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQ 507
+C +C K F++KD LK HM+ HT G KP +
Sbjct: 10 KCEVCGKCFSRKDKLKTHMRC-HT-----------GV-KP------------------YK 38
Query: 508 CRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIP- 566
C+ C SL KH+ R H ++ + P
Sbjct: 39 CKTCDYAAADSSSLNKHL-RIH----SDER----------------------------PF 65
Query: 567 -CELCYKTFTRKDSLRKHMKIFHT 589
C++C L H++ HT
Sbjct: 66 KCQICPYASRNSSQLTVHLRS-HT 88
Score = 33.9 bits (79), Expect = 0.036
Identities = 25/117 (21%), Positives = 36/117 (30%), Gaps = 41/117 (35%)
Query: 214 KCEFCGKVFLKKSNLKAHIENNHLD---YSCLECKAVGEEISFDTKKNLLLHLKTKHKNV 270
KCE CGK F +K LK H H Y C C
Sbjct: 10 KCEVCGKCFSRKDKLKTH-MRCHTGVKPYKCKTCD------------------------- 43
Query: 271 ISNVYLTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
L KH+++H D+ +C+ C + L H+++ T
Sbjct: 44 ------------YAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHT 88
Score = 31.2 bits (72), Expect = 0.29
Identities = 7/23 (30%), Positives = 9/23 (39%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C +C L H+R HT
Sbjct: 67 CQICPYASRNSSQLTVHLRS-HT 88
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 66.7 bits (164), Expect = 8e-14
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 123 KLHECDL--CGKNFSQRNNLKRHLEEVHRT-DGMK-FECYVCSKVLATSHSLKRHLLIHN 178
+ + C + C + FSQ +L RH R G K F+C +C + + S L H+ H
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRH----IRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Query: 179 GPK-YTCEICAKEFTRVYELNIHKKLH 204
G K + C+IC ++F R E H K+H
Sbjct: 59 GEKPFACDICGRKFARSDERKRHTKIH 85
Score = 63.6 bits (156), Expect = 9e-13
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 31/104 (29%)
Query: 46 KRFKC--EQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRQANGSNVNN 103
+ + C E CD+RFS + L +H IH K +C +C +NFS+ ++L
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTT--------- 52
Query: 104 RFSSNAELNKHSSAIHQRL----KLHECDLCGKNFSQRNNLKRH 143
H R K CD+CG+ F++ + KRH
Sbjct: 53 ---------------HIRTHTGEKPFACDICGRKFARSDERKRH 81
Score = 60.6 bits (148), Expect = 1e-11
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 155 FECYV--CSKVLATSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVAN 211
+ C V C + + S SL RH+ IH G K + C IC + F+R L H + H E
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE---K 61
Query: 212 QLKCEFCGKVFLKKSNLKAH 231
C+ CG+ F + K H
Sbjct: 62 PFACDICGRKFARSDERKRH 81
Score = 58.6 bits (143), Expect = 6e-11
Identities = 32/115 (27%), Positives = 46/115 (40%), Gaps = 36/115 (31%)
Query: 75 KLHECDL--CGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRL----KLHECD 128
+ + C + C + FSQ +L R H R+ K +C
Sbjct: 3 RPYACPVESCDRRFSQSGSLTR------------------------HIRIHTGQKPFQCR 38
Query: 129 LCGKNFSQRNNLKRHLEEVHRT-DGMK-FECYVCSKVLATSHSLKRHLLIHNGPK 181
+C +NFS+ ++L H RT G K F C +C + A S KRH IH K
Sbjct: 39 ICMRNFSRSDHLTTH----IRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 56.7 bits (138), Expect = 2e-10
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 23 CYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLC 82
C + F +L RH++IH + K F+C C + FS + L H H K CD+C
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQ--KPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDIC 68
Query: 83 GKNFSQRNNLKR 94
G+ F++ + KR
Sbjct: 69 GRKFARSDERKR 80
Score = 52.5 bits (127), Expect = 7e-09
Identities = 32/129 (24%), Positives = 44/129 (34%), Gaps = 56/129 (43%)
Query: 668 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDS 727
CD+ F++ SL +HIRI HT +P +C +C ++F+R D
Sbjct: 12 CDRRFSQSGSLTRHIRI-HTGQKP---------------------FQCRICMRNFSRSDH 49
Query: 728 LKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNRTFTRN 787
L H R H G P C IC R F R+
Sbjct: 50 LTTHIRT-HTGEKP---------------------------------FACDICGRKFARS 75
Query: 788 YNLKKHMKT 796
K+H K
Sbjct: 76 DERKRHTKI 84
Score = 49.0 bits (118), Expect = 2e-07
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 22/70 (31%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C +C + F+R D L HIR HT +P C++C + F R
Sbjct: 37 CRICMRNFSRSDHLTTHIRT-HTGEKP---------------------FACDICGRKFAR 74
Query: 725 KDSLKKHNRI 734
D K+H +I
Sbjct: 75 SDERKRHTKI 84
Score = 45.5 bits (109), Expect = 2e-06
Identities = 34/138 (24%), Positives = 51/138 (36%), Gaps = 63/138 (45%)
Query: 452 CLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQCRIC 511
C + F++ SL +H+++ HT G+ KP QCRIC
Sbjct: 12 CDRRFSQSGSLTRHIRI-HT-----------GQ-KPF------------------QCRIC 40
Query: 512 SKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIPCELCY 571
+ F+R D L H+ R H T +K F C++C
Sbjct: 41 MRNFSRSDHLTTHI-RTH----TG-EKPFA-------------------------CDICG 69
Query: 572 KTFTRKDSLRKHMKIFHT 589
+ F R D ++H KI H
Sbjct: 70 RKFARSDERKRHTKI-HL 86
Score = 43.2 bits (103), Expect = 1e-05
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 20 CELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKH 66
C +C + F ++L H++ H + K F C+ C ++F+ + E +H
Sbjct: 37 CRICMRNFSRSDHLTTHIRTHTGE--KPFACDICGRKFARSDERKRH 81
Score = 42.8 bits (102), Expect = 2e-05
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 31/79 (39%)
Query: 448 QCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQ 507
QC IC++ F++ D L H++ HT GE KP
Sbjct: 36 QCRICMRNFSRSDHLTTHIRT-HT-----------GE-KP------------------FA 64
Query: 508 CRICSKTFTRKDSLRKHMR 526
C IC + F R D ++H +
Sbjct: 65 CDICGRKFARSDERKRHTK 83
Score = 40.5 bits (96), Expect = 1e-04
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 277 TCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKT 325
C IC + F L H++ H + C C + F+R+ K+H K
Sbjct: 36 QCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKI 84
Score = 37.8 bits (89), Expect = 0.001
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 13/70 (18%)
Query: 182 YTCEI--CAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHI-----EN 234
Y C + C + F++ L H ++H + +C C + F + +L HI E
Sbjct: 5 YACPVESCDRRFSQSGSLTRHIRIHTGQ---KPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 235 NHLDYSCLEC 244
++C C
Sbjct: 62 ---PFACDIC 68
Score = 37.4 bits (88), Expect = 0.001
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 281 CFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
C + F L +H+++H QCR C + FSR+ +L H++T T
Sbjct: 12 CDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Score = 33.6 bits (78), Expect = 0.032
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C +C + F R D K+H +I H
Sbjct: 65 CDICGRKFARSDERKRHTKI-HL 86
Score = 29.4 bits (67), Expect = 1.2
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 448 QCHICLKTFAKKDSLKKHMKVFHT 471
C IC + FA+ D K+H K+ H
Sbjct: 64 ACDICGRKFARSDERKRHTKI-HL 86
Score = 29.0 bits (66), Expect = 1.6
Identities = 20/94 (21%), Positives = 34/94 (36%), Gaps = 23/94 (24%)
Query: 214 KCEF--CGKVFLKKSNLKAH--IENNHLDYSCLEC-KAVGEEISFDTKKNLLLHLKT--- 265
C C + F + +L H I + C C + +F +L H++T
Sbjct: 6 ACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMR------NFSRSDHLTTHIRTHTG 59
Query: 266 -KHKNVISNVYLTCLICFKTFLTEVDLGKHMKMH 298
K + C IC + F + +H K+H
Sbjct: 60 EKP-------F-ACDICGRKFARSDERKRHTKIH 85
Score = 28.6 bits (65), Expect = 2.1
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 566 PCELCYKTFTRKDSLRKHMKIFHT 589
P E C + F++ SL +H++I HT
Sbjct: 8 PVESCDRRFSQSGSLTRHIRI-HT 30
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 65.7 bits (161), Expect = 2e-13
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 114 HSSAIHQRLKLHECDL--CGKNFSQRNNLKRHLEEVHRTD-GMK-FECYV--CSKVLATS 167
S ++ ++H CD C K +++ ++LK HL RT G K ++C C A S
Sbjct: 5 SSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHL----RTHTGEKPYKCTWEGCDWRFARS 60
Query: 168 HSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHED 206
L RH H G K + C +C + F+R L +H K H++
Sbjct: 61 DELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 56.9 bits (138), Expect = 3e-10
Identities = 27/102 (26%), Positives = 36/102 (35%), Gaps = 12/102 (11%)
Query: 134 FSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHNGPK-YTC--EICAKE 190
+H + C+KV S LK HL H G K Y C E C
Sbjct: 3 SGSSGPDLEK-RRIHY-----CDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWR 56
Query: 191 FTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHI 232
F R EL H + H +C C + F + +L H+
Sbjct: 57 FARSDELTRHYRKHTGA---KPFQCGVCNRSFSRSDHLALHM 95
Score = 55.7 bits (135), Expect = 8e-10
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 18 HMCEL--CYKVFESRENLMRHLKIHDDKESKRFKC--EQCDKRFSSNAELNKHSSAIHQR 73
H C+ C KV+ +L HL+ H + K +KC E CD RF+ + EL +H H
Sbjct: 16 HYCDYPGCTKVYTKSSHLKAHLRTHTGE--KPYKCTWEGCDWRFARSDELTRHYR-KHTG 72
Query: 74 LKLHECDLCGKNFSQRNNLKR 94
K +C +C ++FS+ ++L
Sbjct: 73 AKPFQCGVCNRSFSRSDHLAL 93
Score = 50.7 bits (122), Expect = 5e-08
Identities = 34/131 (25%), Positives = 45/131 (34%), Gaps = 58/131 (44%)
Query: 668 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRC--ELCDKSFTRK 725
C K +T+ LK H+R HT +P +C E CD F R
Sbjct: 23 CTKVYTKSSHLKAHLRT-HTGEKP---------------------YKCTWEGCDWRFARS 60
Query: 726 DSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNRTFT 785
D L +H R H GA P C +CNR+F+
Sbjct: 61 DELTRHYRK-HTGAKPFQ---------------------------------CGVCNRSFS 86
Query: 786 RNYNLKKHMKT 796
R+ +L HMK
Sbjct: 87 RSDHLALHMKR 97
Score = 50.7 bits (122), Expect = 5e-08
Identities = 36/159 (22%), Positives = 49/159 (30%), Gaps = 67/159 (42%)
Query: 435 SGSTNNTQANKIIQCHI--CLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEV 492
S + + +I C C K + K LK H++ HT GE KP
Sbjct: 4 GSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRT-HT-----------GE-KP----- 45
Query: 493 ILQEGKVPNNNAIIQCRI--CSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNML 550
+C C F R D L +H R+ H T K
Sbjct: 46 -------------YKCTWEGCDWRFARSDELTRHYRK-H----TGAK------------- 74
Query: 551 DVILKESGHEIKSRIPCELCYKTFTRKDSLRKHMKIFHT 589
C +C ++F+R D L HMK H
Sbjct: 75 -------------PFQCGVCNRSFSRSDHLALHMKR-HQ 99
Score = 50.3 bits (121), Expect = 6e-08
Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 38/122 (31%)
Query: 66 HSSAIHQRLKLHECDL--CGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRL- 122
S ++ ++H CD C K +++ ++LK H R
Sbjct: 5 SSGPDLEKRRIHYCDYPGCTKVYTKSSHLK------------------------AHLRTH 40
Query: 123 ---KLHECDL--CGKNFSQRNNLKRHLEEVHRT-DGMK-FECYVCSKVLATSHSLKRHLL 175
K ++C C F++ + L RH R G K F+C VC++ + S L H+
Sbjct: 41 TGEKPYKCTWEGCDWRFARSDELTRHY----RKHTGAKPFQCGVCNRSFSRSDHLALHMK 96
Query: 176 IH 177
H
Sbjct: 97 RH 98
Score = 44.9 bits (107), Expect = 5e-06
Identities = 31/140 (22%), Positives = 45/140 (32%), Gaps = 50/140 (35%)
Query: 191 FTRVYELNIHKKLHEDESVANQLKCEF--CGKVFLKKSNLKAHIENNHLD---YSCLECK 245
+++H C++ C KV+ K S+LKAH+ H Y C
Sbjct: 3 SGSSGPDLEKRRIH---------YCDYPGCTKVYTKSSHLKAHLRT-HTGEKPYKC---- 48
Query: 246 AVGEEISFDTKKNLLLHLKTKHKNVISNVYLTCLICFKTFLTEVDLGKHMKMHMDDNQIQ 305
T C F +L +H + H Q
Sbjct: 49 -------------------------------TWEGCDWRFARSDELTRHYRKHTGAKPFQ 77
Query: 306 CRFCNKYFSRNYNLKQHMKT 325
C CN+ FSR+ +L HMK
Sbjct: 78 CGVCNRSFSRSDHLALHMKR 97
Score = 41.1 bits (97), Expect = 9e-05
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 21 ELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKH 66
E C F + L RH + H K F+C C++ FS + L H
Sbjct: 51 EGCDWRFARSDELTRHYRKHTGA--KPFQCGVCNRSFSRSDHLALH 94
Score = 36.5 bits (85), Expect = 0.005
Identities = 8/23 (34%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C +C+++F+R D L H++ H
Sbjct: 78 CGVCNRSFSRSDHLALHMKR-HQ 99
Score = 31.1 bits (71), Expect = 0.35
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 281 CFKTFLTEVDLGKHMKMHMDDNQIQCRF--CNKYFSRNYNLKQHMKTCT 327
C K + L H++ H + +C + C+ F+R+ L +H + T
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHT 71
Score = 27.2 bits (61), Expect = 8.2
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 8 HIKSHEYVENHMCELCYKVFESRENLMRHLKIH 40
H + H + C +C + F ++L H+K H
Sbjct: 66 HYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 64.1 bits (157), Expect = 5e-13
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 169 SLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSN 227
S H+G K Y C IC FT+ + +H E+VA + C C V +KS+
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVA-KFHCPHCDTVIARKSD 60
Query: 228 LKAHIENNH 236
L H+ H
Sbjct: 61 LGVHLRKQH 69
Score = 58.7 bits (143), Expect = 4e-11
Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 20/77 (25%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C +C FT+ ++K HI HT+N + C CD R
Sbjct: 18 CYICHARFTQSGTMKMHILQKHTENVAKF--------------------HCPHCDTVIAR 57
Query: 725 KDSLKKHNRIFHGGADP 741
K L H R H + P
Sbjct: 58 KSDLGVHLRKQHSYSGP 74
Score = 54.8 bits (133), Expect = 9e-10
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
Query: 139 NLKRHLEEVHRT-DGMK-FECYVCSKVLATSHSLKRHLLIHNG---PKYTCEICAKEFTR 193
+ RT G K +ECY+C S ++K H+L + K+ C C R
Sbjct: 2 SSGSSG----RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIAR 57
Query: 194 VYELNIH-KKLH 204
+L +H +K H
Sbjct: 58 KSDLGVHLRKQH 69
Score = 54.5 bits (132), Expect = 1e-09
Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 34/89 (38%)
Query: 70 IHQRL----KLHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQR---- 121
R K +EC +C F+Q +K H
Sbjct: 5 SSGRTHSGEKPYECYICHARFTQSGTMKM------------------------HILQKHT 40
Query: 122 --LKLHECDLCGKNFSQRNNLKRHLEEVH 148
+ C C +++++L HL + H
Sbjct: 41 ENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 54.5 bits (132), Expect = 1e-09
Identities = 10/65 (15%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 32 NLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIH--QRLKLHECDLCGKNFSQR 89
+ + H + K ++C C RF+ + + H + + C C +++
Sbjct: 2 SSGSSGRTHSGE--KPYECYICHARFTQSGTMKMHIL-QKHTENVAKFHCPHCDTVIARK 58
Query: 90 NNLKR 94
++L
Sbjct: 59 SDLGV 63
Score = 54.1 bits (131), Expect = 1e-09
Identities = 11/52 (21%), Positives = 20/52 (38%)
Query: 20 CELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIH 71
C +C+ F + H+ + +F C CD + ++L H H
Sbjct: 18 CYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH 69
Score = 52.1 bits (126), Expect = 8e-09
Identities = 18/122 (14%), Positives = 28/122 (22%), Gaps = 54/122 (44%)
Query: 677 SLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDSLKKHNRIFH 736
S R H+ +P C +C FT+ ++K H H
Sbjct: 2 SSGSSGRT-HSGEKP---------------------YECYICHARFTQSGTMKMHILQKH 39
Query: 737 GGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNRTFTRNYNLKKHMKT 796
K C C+ R +L H++
Sbjct: 40 TENVAKFH--------------------------------CPHCDTVIARKSDLGVHLRK 67
Query: 797 VH 798
H
Sbjct: 68 QH 69
Score = 51.8 bits (125), Expect = 1e-08
Identities = 15/83 (18%), Positives = 23/83 (27%), Gaps = 31/83 (37%)
Query: 448 QCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEG-KPNILEVILQEGKVPNNNAII 506
+C+IC F + ++K H+ E
Sbjct: 17 ECYICHARFTQSGTMKMHILQ-KH-----------TENVAK------------------F 46
Query: 507 QCRICSKTFTRKDSLRKHMRRFH 529
C C RK L H+R+ H
Sbjct: 47 HCPHCDTVIARKSDLGVHLRKQH 69
Score = 49.1 bits (118), Expect = 9e-08
Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 29/87 (33%)
Query: 507 QCRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIP 566
+C IC FT+ +++ H+ + H T +F
Sbjct: 17 ECYICHARFTQSGTMKMHILQKH----TENVAKFH------------------------- 47
Query: 567 CELCYKTFTRKDSLRKHMKIFHTRRNP 593
C C RK L H++ H+ P
Sbjct: 48 CPHCDTVIARKSDLGVHLRKQHSYSGP 74
Score = 42.1 bits (100), Expect = 3e-05
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 277 TCLICFKTFLTEVDLGKHMKMHMDDNQ--IQCRFCNKYFSRNYNLKQHMKT 325
C IC F + H+ +N C C+ +R +L H++
Sbjct: 17 ECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Score = 34.4 bits (80), Expect = 0.012
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 448 QCHICLKTFAKKDSLKKHMKVFHTY 472
C C A+K L H++ H+Y
Sbjct: 47 HCPHCDTVIARKSDLGVHLRKQHSY 71
Score = 32.5 bits (75), Expect = 0.057
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 777 CKICNRTFTRNYNLKKHMKTVHKIDDNEPY 806
C IC+ FT++ +K H+ ++ +
Sbjct: 18 CYICHARFTQSGTMKMHILQ-KHTENVAKF 46
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 64.1 bits (157), Expect = 6e-13
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 119 HQRLKLHECDLCGKNFSQRNNLKRHLEEVHRTD-GMK-FECYV--CSKVLATSHSLKRHL 174
+ CGK +++ ++LK HL RT G K + C C A S L RH
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHL----RTHTGEKPYHCDWDGCGWKFARSDELTRHY 57
Query: 175 LIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
H G + + C+ C + F+R L +H K H
Sbjct: 58 RKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 54.5 bits (132), Expect = 1e-09
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 9/90 (10%)
Query: 7 EHIKSHEYVENHMCELCYKVFESRENLMRHLKIHDDKESKRFKC--EQCDKRFSSNAELN 64
+ +H C K + +L HL+ H + K + C + C +F+ + EL
Sbjct: 1 KRTATHTC----DYAGCGKTYTKSSHLKAHLRTHTGE--KPYHCDWDGCGWKFARSDELT 54
Query: 65 KHSSAIHQRLKLHECDLCGKNFSQRNNLKR 94
+H H + +C C + FS+ ++L
Sbjct: 55 RHYR-KHTGHRPFQCQKCDRAFSRSDHLAL 83
Score = 54.5 bits (132), Expect = 1e-09
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 154 KFECYVCSKVLATSHSLKRHLLIHNGPK-YTC--EICAKEFTRVYELNIHKKLHEDESVA 210
+ C K S LK HL H G K Y C + C +F R EL H + H
Sbjct: 7 TCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH--- 63
Query: 211 NQLKCEFCGKVFLKKSNLKAH 231
+C+ C + F + +L H
Sbjct: 64 RPFQCQKCDRAFSRSDHLALH 84
Score = 52.5 bits (127), Expect = 7e-09
Identities = 25/115 (21%), Positives = 41/115 (35%), Gaps = 36/115 (31%)
Query: 71 HQRLKLHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRL----KLHE 126
+ CGK +++ ++LK H R K +
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLK------------------------AHLRTHTGEKPYH 37
Query: 127 CDL--CGKNFSQRNNLKRHLEEVHRT-DGMK-FECYVCSKVLATSHSLKRHLLIH 177
CD CG F++ + L RH +R G + F+C C + + S L H+ H
Sbjct: 38 CDWDGCGWKFARSDELTRH----YRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 50.2 bits (121), Expect = 5e-08
Identities = 31/133 (23%), Positives = 42/133 (31%), Gaps = 54/133 (40%)
Query: 664 PCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFT 723
C KT+T+ LK H+R HT +P H + C F
Sbjct: 9 DYAGCGKTYTKSSHLKAHLRT-HTGEKPYHCDWDG-------------------CGWKFA 48
Query: 724 RKDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNRT 783
R D L +H R H G P C+ C+R
Sbjct: 49 RSDELTRHYRK-HTGHRPFQ---------------------------------CQKCDRA 74
Query: 784 FTRNYNLKKHMKT 796
F+R+ +L HMK
Sbjct: 75 FSRSDHLALHMKR 87
Score = 45.2 bits (108), Expect = 3e-06
Identities = 32/144 (22%), Positives = 41/144 (28%), Gaps = 64/144 (44%)
Query: 445 KIIQCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNA 504
C KT+ K LK H++ HT GE KP
Sbjct: 6 HTCDYAGCGKTYTKSSHLKAHLRT-HT-----------GE-KP----------------- 35
Query: 505 IIQCRI--CSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIK 562
C C F R D L +H R+ H T +
Sbjct: 36 -YHCDWDGCGWKFARSDELTRHYRK-H----TGHR------------------------- 64
Query: 563 SRIPCELCYKTFTRKDSLRKHMKI 586
C+ C + F+R D L HMK
Sbjct: 65 -PFQCQKCDRAFSRSDHLALHMKR 87
Score = 41.4 bits (98), Expect = 6e-05
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 23 CYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKH 66
C F + L RH + H + F+C++CD+ FS + L H
Sbjct: 43 CGWKFARSDELTRHYRKHTGH--RPFQCQKCDRAFSRSDHLALH 84
Score = 40.6 bits (96), Expect = 1e-04
Identities = 27/115 (23%), Positives = 38/115 (33%), Gaps = 39/115 (33%)
Query: 214 KCEFCGKVFLKKSNLKAHIENNHLD---YSCLECKAVGEEISFDTKKNLLLHLKTKHKNV 270
CGK + K S+LKAH+ H Y C
Sbjct: 9 DYAGCGKTYTKSSHLKAHLRT-HTGEKPYHC----------------------------- 38
Query: 271 ISNVYLTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKT 325
C F +L +H + H QC+ C++ FSR+ +L HMK
Sbjct: 39 ------DWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKR 87
Score = 26.7 bits (60), Expect = 9.0
Identities = 8/20 (40%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
Query: 570 CYKTFTRKDSLRKHMKIFHT 589
C F R D L +H + HT
Sbjct: 43 CGWKFARSDELTRHYRK-HT 61
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 62.8 bits (154), Expect = 2e-12
Identities = 30/73 (41%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 20 CELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
C++C K F+ L HL IH D + + C+ C KRF +++ KH+ IH K H+C
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDT--RPYPCQYCGKRFHQKSDMKKHTF-IHTGEKPHKC 60
Query: 80 DLCGKNFSQRNNL 92
+CGK FSQ +NL
Sbjct: 61 QVCGKAFSQSSNL 73
Score = 62.4 bits (153), Expect = 2e-12
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 29/100 (29%)
Query: 48 FKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRQANGSNVNNRFSS 107
F C+ C K F ++ L+ H IH + + C CGK F Q++++K+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKK------------- 47
Query: 108 NAELNKHSSAIHQRL----KLHECDLCGKNFSQRNNLKRH 143
H + K H+C +CGK FSQ +NL H
Sbjct: 48 -----------HTFIHTGEKPHKCQVCGKAFSQSSNLITH 76
Score = 58.2 bits (142), Expect = 5e-11
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 126 ECDLCGKNFSQRNNLKRHLEEVHRT-DGMK-FECYVCSKVLATSHSLKRHLLIHNGPK-Y 182
+C +CGK+F + + L H + + C C K +K+H IH G K +
Sbjct: 3 DCKICGKSFKRSSTLSTH----LLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPH 58
Query: 183 TCEICAKEFTRVYELNIHKKLH 204
C++C K F++ L H + H
Sbjct: 59 KCQVCGKAFSQSSNLITHSRKH 80
Score = 55.1 bits (134), Expect = 9e-10
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVANQL 213
F+C +C K S +L HLLIH+ + Y C+ C K F + ++ H +H E
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGE---KPH 58
Query: 214 KCEFCGKVFLKKSNLKAH 231
KC+ CGK F + SNL H
Sbjct: 59 KCQVCGKAFSQSSNLITH 76
Score = 54.0 bits (131), Expect = 2e-09
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 34/108 (31%)
Query: 78 ECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRL----KLHECDLCGKN 133
+C +CGK+F + + L + H + + + C CGK
Sbjct: 3 DCKICGKSFKRSSTL------------------------STHLLIHSDTRPYPCQYCGKR 38
Query: 134 FSQRNNLKRHLEEVHRT-DGMK-FECYVCSKVLATSHSLKRHLLIHNG 179
F Q++++K+H G K +C VC K + S +L H H G
Sbjct: 39 FHQKSDMKKH----TFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 42.0 bits (100), Expect = 3e-05
Identities = 28/132 (21%), Positives = 44/132 (33%), Gaps = 56/132 (42%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C +C K+F R +L H+ I H+ +P C+ C K F +
Sbjct: 4 CKICGKSFKRSSTLSTHLLI-HSDTRP---------------------YPCQYCGKRFHQ 41
Query: 725 KDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICNRTF 784
K +KKH I H G P C++C + F
Sbjct: 42 KSDMKKHTFI-HTGEKPHK---------------------------------CQVCGKAF 67
Query: 785 TRNYNLKKHMKT 796
+++ NL H +
Sbjct: 68 SQSSNLITHSRK 79
Score = 38.9 bits (92), Expect = 4e-04
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 20 CELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKH 66
C+ C K F + ++ +H IH + K KC+ C K FS ++ L H
Sbjct: 32 CQYCGKRFHQKSDMKKHTFIHTGE--KPHKCQVCGKAFSQSSNLITH 76
Score = 35.1 bits (82), Expect = 0.008
Identities = 28/144 (19%), Positives = 45/144 (31%), Gaps = 67/144 (46%)
Query: 448 QCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQ 507
C IC K+F + +L H+ + H+ +P
Sbjct: 3 DCKICGKSFKRSSTLSTHLLI-HS-----------DT-RP------------------YP 31
Query: 508 CRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIP- 566
C+ C K F +K ++KH H T K P
Sbjct: 32 CQYCGKRFHQKSDMKKHT-FIH----TGEK----------------------------PH 58
Query: 567 -CELCYKTFTRKDSLRKHMKIFHT 589
C++C K F++ +L H + HT
Sbjct: 59 KCQVCGKAFSQSSNLITHSRK-HT 81
Score = 32.0 bits (74), Expect = 0.10
Identities = 30/119 (25%), Positives = 41/119 (34%), Gaps = 45/119 (37%)
Query: 214 KCEFCGKVFLKKSNLKAH--IENNHLD---YSCLECKAVGEEISFDTKKNLLLHLKTKHK 268
C+ CGK F + S L H I H D Y C C G
Sbjct: 3 DCKICGKSFKRSSTLSTHLLI---HSDTRPYPCQYC---G-------------------- 36
Query: 269 NVISNVYLTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
K F + D+ KH +H + +C+ C K FS++ NL H + T
Sbjct: 37 --------------KRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHT 81
Score = 28.9 bits (66), Expect = 1.4
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C +C K F++ +L H R HT
Sbjct: 60 CQVCGKAFSQSSNLITHSRK-HT 81
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 61.7 bits (150), Expect = 4e-12
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 18 HMCELCYKVFESRENLMRHLKIHDDKES-KRFKCEQCDKRFSSNAELNKHSSAIHQRLKL 76
CE+C + +L H + H + + RF CE C KRF + H S H L L
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 77 HECDLCGK 84
+ G
Sbjct: 68 APQESSGP 75
Score = 61.3 bits (149), Expect = 5e-12
Identities = 21/67 (31%), Positives = 31/67 (46%)
Query: 182 YTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHIENNHLDYSC 241
CEIC + LN H++ H + A + CEFCGK F K ++ AH +H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Query: 242 LECKAVG 248
++ G
Sbjct: 68 APQESSG 74
Score = 59.3 bits (144), Expect = 2e-11
Identities = 20/78 (25%), Positives = 25/78 (32%), Gaps = 19/78 (24%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C +C T +K SL H R H + A R CE C K F +
Sbjct: 10 CEICGFTCRQKASLNWHQRK-HAETV-----------AAL-------RFPCEFCGKRFEK 50
Query: 725 KDSLKKHNRIFHGGADPK 742
DS+ H H
Sbjct: 51 PDSVAAHRSKSHPALLLA 68
Score = 55.9 bits (135), Expect = 4e-10
Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 5/73 (6%)
Query: 123 KLHECDLCGKNFSQRNNLKRHLEEVH-RTDGMK-FECYVCSKVLATSHSLKRHLLIHNGP 180
+C++CG Q+ +L H H T F C C K S+ H +
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPA 64
Query: 181 K--YTCEICAKEF 191
E
Sbjct: 65 LLLAPQESSGPSS 77
Score = 55.5 bits (134), Expect = 6e-10
Identities = 19/82 (23%), Positives = 24/82 (29%), Gaps = 28/82 (34%)
Query: 448 QCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQ 507
QC IC T +K SL H + H E
Sbjct: 9 QCEICGFTCRQKASLNWHQRK-HA--------ETVAA-LR------------------FP 40
Query: 508 CRICSKTFTRKDSLRKHMRRFH 529
C C K F + DS+ H + H
Sbjct: 41 CEFCGKRFEKPDSVAAHRSKSH 62
Score = 54.7 bits (132), Expect = 9e-10
Identities = 22/87 (25%), Positives = 27/87 (31%), Gaps = 28/87 (32%)
Query: 507 QCRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIP 566
QC IC T +K SL H R+ H +T F
Sbjct: 9 QCEICGFTCRQKASLNWHQRK-H--AETVAALRFP------------------------- 40
Query: 567 CELCYKTFTRKDSLRKHMKIFHTRRNP 593
CE C K F + DS+ H H
Sbjct: 41 CEFCGKRFEKPDSVAAHRSKSHPALLL 67
Score = 53.6 bits (129), Expect = 2e-09
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 31/81 (38%)
Query: 75 KLHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRL-------KLHEC 127
+C++CG Q+ +L HQR C
Sbjct: 6 SGLQCEICGFTCRQKASLN------------------------WHQRKHAETVAALRFPC 41
Query: 128 DLCGKNFSQRNNLKRHLEEVH 148
+ CGK F + +++ H + H
Sbjct: 42 EFCGKRFEKPDSVAAHRSKSH 62
Score = 51.6 bits (124), Expect = 1e-08
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 4/52 (7%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQRL---KLHECDLCGKNFSQRNNLKR 94
+CE C A LN H H C+ CGK F + +++
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAA 56
Score = 46.2 bits (110), Expect = 1e-06
Identities = 14/85 (16%), Positives = 23/85 (27%), Gaps = 31/85 (36%)
Query: 714 RCELCDKSFTRKDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITN 773
+CE+C + +K SL H R H
Sbjct: 9 QCEICGFTCRQKASLNWHQRK-HA-----------------------ETVAA-------L 37
Query: 774 EILCKICNRTFTRNYNLKKHMKTVH 798
C+ C + F + ++ H H
Sbjct: 38 RFPCEFCGKRFEKPDSVAAHRSKSH 62
Score = 45.5 bits (108), Expect = 2e-06
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 276 LTCLICFKTFLTEVDLGKHMKMHMDDN---QIQCRFCNKYFSRNYNLKQHMKT 325
L C IC T + L H + H + + C FC K F + ++ H
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSK 60
Score = 41.2 bits (97), Expect = 5e-05
Identities = 9/29 (31%), Positives = 11/29 (37%)
Query: 664 PCTLCDKTFTRKDSLKKHIRIFHTQNQPQ 692
PC C K F + DS+ H H
Sbjct: 40 PCEFCGKRFEKPDSVAAHRSKSHPALLLA 68
Score = 36.2 bits (84), Expect = 0.003
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 448 QCHICLKTFAKKDSLKKHMKVFHTYISP 475
C C K F K DS+ H H +
Sbjct: 40 PCEFCGKRFEKPDSVAAHRSKSHPALLL 67
Score = 35.8 bits (83), Expect = 0.004
Identities = 15/95 (15%), Positives = 26/95 (27%), Gaps = 32/95 (33%)
Query: 213 LKCEFCGKVFLKKSNLKAHIENNHLDYSCLECKAVGEEISFDTKKNLLLHLKTKHKNVIS 272
L+CE CG +K++L H + KH ++
Sbjct: 8 LQCEICGFTCRQKASLNWH--------------------------------QRKHAETVA 35
Query: 273 NVYLTCLICFKTFLTEVDLGKHMKMHMDDNQIQCR 307
+ C C K F + H + +
Sbjct: 36 ALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQ 70
Score = 33.1 bits (76), Expect = 0.038
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 777 CKICNRTFTRNYNLKKHMKTVHKIDDNE-PY 806
C+IC T + +L H + H +
Sbjct: 10 CEICGFTCRQKASLNWHQRK-HAETVAALRF 39
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 59.8 bits (146), Expect = 2e-11
Identities = 20/88 (22%), Positives = 26/88 (29%), Gaps = 15/88 (17%)
Query: 115 SSAIHQRL----KLHECDLCGKNFSQRNNLKRHLEEVHRT-----DGMK-FECYVCSKVL 164
SS R K + C C K F Q+ L H + F C C K
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMH----FKRYHDPNFVPAAFVCSKCGKTF 57
Query: 165 ATSHSLKRHLLIHNGPK-YTCEICAKEF 191
+++ RH GP E
Sbjct: 58 TRRNTMARHADNCAGPDGVEGENSGPSS 85
Score = 56.8 bits (138), Expect = 2e-10
Identities = 20/111 (18%), Positives = 31/111 (27%), Gaps = 35/111 (31%)
Query: 32 NLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIH----QRLKLHECDLCGKNFS 87
+ + H + K + C CDK F L+ H + C CGK F+
Sbjct: 2 SSGSSGRTHTGE--KPYACSHCDKTFRQKQLLDMHFK-RYHDPNFVPAAFVCSKCGKTFT 58
Query: 88 QRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRL----KLHECDLCGKNF 134
+RN + R H E + G +
Sbjct: 59 RRNTMAR------------------------HADNCAGPDGVEGENSGPSS 85
Score = 54.5 bits (132), Expect = 2e-09
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 20 CELCYKVFESRENLMRHLKIH--DDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLH 77
C C K F ++ L H K + + F C +C K F+ + +H+
Sbjct: 18 CSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHAD-NCAGPDGV 76
Query: 78 ECDLCGKNF 86
E + G +
Sbjct: 77 EGENSGPSS 85
Score = 53.7 bits (130), Expect = 3e-09
Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 7/86 (8%)
Query: 169 SLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVANQ-LKCEFCGKVFLKKS 226
S H G K Y C C K F + L++H K + D + C CGK F +++
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 227 NLKAHIENNHLD---YSCLEC-KAVG 248
+ H +N + G
Sbjct: 62 TMARH-ADNCAGPDGVEGENSGPSSG 86
Score = 44.4 bits (106), Expect = 4e-06
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 19/77 (24%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C+ CDKTF +K L H + + + AAF C C K+FTR
Sbjct: 18 CSHCDKTFRQKQLLDMHFKR--------YHD------PNFVPAAF----VCSKCGKTFTR 59
Query: 725 KDSLKKHNRIFHGGADP 741
++++ +H G D
Sbjct: 60 RNTMARHADN-CAGPDG 75
Score = 40.6 bits (96), Expect = 1e-04
Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 27/79 (34%)
Query: 448 QCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQ 507
C C KTF +K L H K + + +
Sbjct: 17 ACSHCDKTFRQKQLLDMHFKR-YH--------DPNFVPAA------------------FV 49
Query: 508 CRICSKTFTRKDSLRKHMR 526
C C KTFTR++++ +H
Sbjct: 50 CSKCGKTFTRRNTMARHAD 68
Score = 39.0 bits (92), Expect = 4e-04
Identities = 20/83 (24%), Positives = 29/83 (34%), Gaps = 28/83 (33%)
Query: 507 QCRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIP 566
C C KTF +K L H +R+H + V F
Sbjct: 17 ACSHCDKTFRQKQLLDMHFKRYH--DPNFVPAAFV------------------------- 49
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C C KTFTR++++ +H
Sbjct: 50 CSKCGKTFTRRNTMARHADN-CA 71
Score = 38.7 bits (91), Expect = 6e-04
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 277 TCLICFKTFLTEVDLGKHMKMHMDDNQI----QCRFCNKYFSRNYNLKQHMKTCT 327
C C KTF + L H K + D N + C C K F+R + +H C
Sbjct: 17 ACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCA 71
Score = 37.5 bits (88), Expect = 0.001
Identities = 16/82 (19%), Positives = 24/82 (29%), Gaps = 30/82 (36%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNE 774
C CDK+F +K L H + +H +
Sbjct: 18 CSHCDKTFRQKQLLDMHFKRYHD------------------------PNFVPAAFV---- 49
Query: 775 ILCKICNRTFTRNYNLKKHMKT 796
C C +TFTR + +H
Sbjct: 50 --CSKCGKTFTRRNTMARHADN 69
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 64.3 bits (156), Expect = 2e-10
Identities = 111/633 (17%), Positives = 196/633 (30%), Gaps = 245/633 (38%)
Query: 167 SHSLKRHLLIHNGPKYTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKS 226
++S R L + +G + E L + +A+QL+ +F
Sbjct: 3 AYST-RPLTLSHG-----SL---EHV----LLVPTASF---FIASQLQEQF-------NK 39
Query: 227 NLKAHIENNHLDY---SCLECKAVGEEISFDTKKNLLLHLKTKHKNVISNVYLTCLICF- 282
L E D + E VG+ + + + ++ V CL F
Sbjct: 40 ILPEPTEGFAADDEPTTPAEL--VGKFLGYVSSL-----VEPSKVGQFDQVLNLCLTEFE 92
Query: 283 KTFLTEVDLGKHM---KMHMDDNQIQCRFCNKYFSRNY-NLKQHMKTCTKNVSNGILNCD 338
+L D+ H K+ +++ + K +NY + K SN L
Sbjct: 93 NCYLEGNDI--HALAAKLLQENDTTLVK--TKELIKNYITARIMAKRPFDKKSNSALFRA 148
Query: 339 DNEGE------YNGHGSHEENEDDEDY-DDMNEM------MLVPVIKM---ELKEENEEN 382
EG + G G+ +DY +++ ++ ++ +IK L E
Sbjct: 149 VGEGNAQLVAIFGGQGN------TDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTT 202
Query: 383 EDRENQS----------EEENYTP-------VPEVSIKRETDPLS-----VEDIISAGEV 420
D E E + TP +P +S PL +++A +
Sbjct: 203 LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP-ISC-----PLIGVIQLAHYVVTAKLL 256
Query: 421 SITPIPQSNTNNHGSGSTNNTQANKIIQCHICLKTFAKKDS-------LKKHMKV-F--- 469
TP ++ G+T ++Q ++ A+ DS ++K + V F
Sbjct: 257 GFTP---GELRSYLKGATGHSQG--LVTAVA----IAETDSWESFFVSVRKAITVLFFIG 307
Query: 470 --------HTYISPDAIKE--ESGEGKPN-ILEVI-LQEGKVPNNNAIIQCRICSKTFTR 517
+T + P +++ E+ EG P+ +L + L + +V Q +
Sbjct: 308 VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV-------QDYV------- 353
Query: 518 KDSLRKHM---RRFHI--INDTNVKKEFTEGQINRNMLDVILKESGH------------E 560
+ H+ ++ I +N G +N+ V+ SG +
Sbjct: 354 -NKTNSHLPAGKQVEISLVN----------GA--KNL--VV---SGPPQSLYGLNLTLRK 395
Query: 561 IK-------SRIPCELCYKTFTRKDSLRKHMKIFHTRRNPSANSGNSGTSAP-------P 606
K SRIP F S RK F R P ++P P
Sbjct: 396 AKAPSGLDQSRIP-------F----SERK--LKFSNRFLP--------VASPFHSHLLVP 434
Query: 607 AVKLEQNGGEKVENSTSVENSTSVENSTSVENSAN-----VENTSS-VDNRTSVGPVAP- 659
A + + N V +A V +T D R G ++
Sbjct: 435 AS-------DLINKDLVKNN---------VSFNAKDIQIPVYDTFDGSDLRVLSGSISER 478
Query: 660 ----IDRIPC---TLCDKTFTRKDSLKKHIRIF 685
I R+P T T HI F
Sbjct: 479 IVDCIIRLPVKWETTTQFKAT-------HILDF 504
Score = 51.6 bits (123), Expect = 1e-06
Identities = 30/212 (14%), Positives = 67/212 (31%), Gaps = 60/212 (28%)
Query: 637 ENSANVENTSSVDNRTSVGPVAPIDRIPCTLCDKTFTRKDSLKKHIRIFHTQN-QP---- 691
EN + + + VD + + I TF + L + TQ QP
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKI--FKEINEHSTSYTFRSEKGL-----LSATQFTQPALTL 1738
Query: 692 ---------QHTNVI------------E-VALGARANA-AFID-----RIRCELCDKSFT 723
+ +I E AL + A+ + R +
Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVP 1798
Query: 724 RKDSLKKHN---------RIFHGGADPKVMD--EQMARGSADFLEVV-LNEDGE-----G 766
R D L + N R+ + + E++ + + +E+V N + + G
Sbjct: 1799 R-DELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAG 1857
Query: 767 EPVSITNEILCKICNRTFTRNYNLKKHMKTVH 798
+ ++ + + + N + ++ + K++
Sbjct: 1858 DLRAL--DTVTNVLNFIKLQKIDIIELQKSLS 1887
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 56.4 bits (137), Expect = 3e-10
Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 8/75 (10%)
Query: 123 KLHECDL--CGKNFSQRNNLKRHLEEVHRTDGMK-FEC--YVCSKVLATSHSLKRHLLIH 177
CD CG+ FS R L H + H K F C C K LK H+ +H
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHI--HQKSFSCPEPACGKSFNFKKHLKEHMKLH 63
Query: 178 NGPK-YTCEICAKEF 191
+ + Y CE
Sbjct: 64 SDTRDYICEFSGPSS 78
Score = 48.7 bits (117), Expect = 1e-07
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 20 CELCYKVFESRENLMRHLKIHDDKESKRFKCEQ--CDKRFSSNAELNKHSSAIHQRLKLH 77
C ++F +R+ L H K + K F C + C K F+ L +H +H + +
Sbjct: 12 FPGCGRIFSNRQYLNHHKKYQHIHQ-KSFSCPEPACGKSFNFKKHLKEHMK-LHSDTRDY 69
Query: 78 ECDLCGKNF 86
C+ G +
Sbjct: 70 ICEFSGPSS 78
Score = 46.4 bits (111), Expect = 8e-07
Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 32/97 (32%)
Query: 46 KRFKC--EQCDKRFSSNAELNKHSSAIHQRLKLHECD--LCGKNFSQRNNLKRQANGSNV 101
C C + FS+ LN H H K C CGK+F+ + +LK
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKE------- 58
Query: 102 NNRFSSNAELNKHSSAIHQRL----KLHECDLCGKNF 134
H +L + + C+ G +
Sbjct: 59 -----------------HMKLHSDTRDYICEFSGPSS 78
Score = 46.0 bits (110), Expect = 1e-06
Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 25/75 (33%)
Query: 664 PCTL--CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCE--LCD 719
PC C + F+ + L H + H + C C
Sbjct: 9 PCDFPGCGRIFSNRQYLNHHKKYQHIHQKS---------------------FSCPEPACG 47
Query: 720 KSFTRKDSLKKHNRI 734
KSF K LK+H ++
Sbjct: 48 KSFNFKKHLKEHMKL 62
Score = 39.8 bits (94), Expect = 2e-04
Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 14/82 (17%)
Query: 177 HNGPK-YTCEI--CAKEFTRVYELNIHKKL-HEDESVANQLKCEF--CGKVFLKKSNLKA 230
+G C+ C + F+ LN HKK H + C CGK F K +LK
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQK---SFSCPEPACGKSFNFKKHLKE 58
Query: 231 HIENNHLD---YSCLEC-KAVG 248
H H D Y C + G
Sbjct: 59 H-MKLHSDTRDYICEFSGPSSG 79
Score = 37.5 bits (88), Expect = 0.001
Identities = 15/77 (19%), Positives = 23/77 (29%), Gaps = 32/77 (41%)
Query: 452 CLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQC--R 509
C + F+ + L H K H + K C
Sbjct: 15 CGRIFSNRQYLNHHKKYQHI-----------HQ-KS------------------FSCPEP 44
Query: 510 ICSKTFTRKDSLRKHMR 526
C K+F K L++HM+
Sbjct: 45 ACGKSFNFKKHLKEHMK 61
Score = 36.8 bits (86), Expect = 0.002
Identities = 13/82 (15%), Positives = 21/82 (25%), Gaps = 31/82 (37%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNE 774
C + F+ + L H + H E
Sbjct: 12 FPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPA-------------------------- 45
Query: 775 ILCKICNRTFTRNYNLKKHMKT 796
C ++F +LK+HMK
Sbjct: 46 -----CGKSFNFKKHLKEHMKL 62
Score = 34.8 bits (81), Expect = 0.012
Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 33/81 (40%)
Query: 511 CSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIPCE-- 568
C + F+ + L H + HI +K F+ C
Sbjct: 15 CGRIFSNRQYLNHHKKYQHI-----HQKSFS-------------------------CPEP 44
Query: 569 LCYKTFTRKDSLRKHMKIFHT 589
C K+F K L++HMK+ H+
Sbjct: 45 ACGKSFNFKKHLKEHMKL-HS 64
Score = 34.1 bits (79), Expect = 0.021
Identities = 22/105 (20%), Positives = 33/105 (31%), Gaps = 40/105 (38%)
Query: 214 KCEF--CGKVFLKKSNLKAHIENNHLD---YSCLECKAVGEEISFDTKKNLLLHLKTKHK 268
C+F CG++F + L H + H+ +SC E
Sbjct: 9 PCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPA----------------------- 45
Query: 269 NVISNVYLTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYF 313
C K+F + L +HMK+H D C F
Sbjct: 46 ------------CGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 32.9 bits (76), Expect = 0.048
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 566 PCELCYKTFTRKDSLRKHMKIFHT 589
C + F+ + L H K H
Sbjct: 11 DFPGCGRIFSNRQYLNHHKKYQHI 34
Score = 31.0 bits (71), Expect = 0.20
Identities = 8/20 (40%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 668 CDKTFTRKDSLKKHIRIFHT 687
C K+F K LK+H+++ H+
Sbjct: 46 CGKSFNFKKHLKEHMKL-HS 64
Score = 30.2 bits (69), Expect = 0.43
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 281 CFKTFLTEVDLGKHMKM-HMDDNQIQCRF--CNKYFSRNYNLKQHMKT 325
C + F L H K H+ C C K F+ +LK+HMK
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKL 62
Score = 28.3 bits (64), Expect = 2.4
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 780 CNRTFTRNYNLKKHMKTVH 798
C R F+ L H K H
Sbjct: 15 CGRIFSNRQYLNHHKKYQH 33
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 55.6 bits (135), Expect = 4e-10
Identities = 11/57 (19%), Positives = 24/57 (42%)
Query: 123 KLHECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHNG 179
+ C +C + ++ +N RH H+ + + C C K ++ H+ I +
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 53.7 bits (130), Expect = 2e-09
Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 20/73 (27%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C +C + +T + +H H NV C C K FTR
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSH------KRNV--------------KVYPCPFCFKEFTR 52
Query: 725 KDSLKKHNRIFHG 737
KD++ H +I H
Sbjct: 53 KDNMTAHVKIIHK 65
Score = 53.3 bits (129), Expect = 2e-09
Identities = 12/81 (14%), Positives = 27/81 (33%), Gaps = 30/81 (37%)
Query: 75 KLHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRLKLH------ECD 128
+ C +C + ++ +N R H C
Sbjct: 9 HTYRCKVCSRVYTHISNFCR------------------------HYVTSHKRNVKVYPCP 44
Query: 129 LCGKNFSQRNNLKRHLEEVHR 149
C K F++++N+ H++ +H+
Sbjct: 45 FCFKEFTRKDNMTAHVKIIHK 65
Score = 52.6 bits (127), Expect = 3e-09
Identities = 9/50 (18%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 46 KRFKCEQCDKRFSSNAELNKHS-SAIHQRLKLHECDLCGKNFSQRNNLKR 94
++C+ C + ++ + +H ++ + +K++ C C K F++++N+
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTA 58
Score = 50.6 bits (122), Expect = 2e-08
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 20 CELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQ 72
C++C +V+ N RH + K + C C K F+ + H IH+
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 48.7 bits (117), Expect = 9e-08
Identities = 16/88 (18%), Positives = 26/88 (29%), Gaps = 34/88 (38%)
Query: 714 RCELCDKSFTRKDSLKKHNRIF-HGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSIT 772
RC++C + +T + +H
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHKRNVKVYP----------------------------- 42
Query: 773 NEILCKICNRTFTRNYNLKKHMKTVHKI 800
C C + FTR N+ H+K +HKI
Sbjct: 43 ----CPFCFKEFTRKDNMTAHVKIIHKI 66
Score = 47.2 bits (113), Expect = 3e-07
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 29/82 (35%)
Query: 507 QCRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIP 566
+C++CS+ +T + +H + NVK P
Sbjct: 12 RCKVCSRVYTHISNFCRHYV---TSHKRNVKV--------------------------YP 42
Query: 567 CELCYKTFTRKDSLRKHMKIFH 588
C C+K FTRKD++ H+KI H
Sbjct: 43 CPFCFKEFTRKDNMTAHVKIIH 64
Score = 44.1 bits (105), Expect = 4e-06
Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 29/82 (35%)
Query: 448 QCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQ 507
+C +C + + + +H H K
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHK----------RNV-KV------------------YP 42
Query: 508 CRICSKTFTRKDSLRKHMRRFH 529
C C K FTRKD++ H++ H
Sbjct: 43 CPFCFKEFTRKDNMTAHVKIIH 64
Score = 43.7 bits (104), Expect = 5e-06
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 176 IHNGPK-YTCEICAKEFTRVYELNIHK--KLHEDESVANQLKCEFCGKVFLKKSNLKAHI 232
G Y C++C++ +T + H + V C FC K F +K N+ AH+
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKV---YPCPFCFKEFTRKDNMTAHV 60
Query: 233 ENNH 236
+ H
Sbjct: 61 KIIH 64
Score = 41.4 bits (98), Expect = 3e-05
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 9/59 (15%)
Query: 214 KCEFCGKVFLKKSNLKAHIENNHLD----YSCLECKAVGEEISFDTKKNLLLHLKTKHK 268
+C+ C +V+ SN H +H Y C C F K N+ H+K HK
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFC-----FKEFTRKDNMTAHVKIIHK 65
Score = 39.8 bits (94), Expect = 1e-04
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 277 TCLICFKTFLTEVDLGKHM--KMHMDDNQIQCRFCNKYFSRNYNLKQHMKT 325
C +C + + + +H + C FC K F+R N+ H+K
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 37.1 bits (87), Expect = 0.001
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 664 PCTLCDKTFTRKDSLKKHIRIFH 686
PC C K FTRKD++ H++I H
Sbjct: 42 PCPFCFKEFTRKDNMTAHVKIIH 64
Score = 30.2 bits (69), Expect = 0.33
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C++C + +T + +H H
Sbjct: 13 CKVCSRVYTHISNFCRHYVTSHK 35
Score = 29.4 bits (67), Expect = 0.61
Identities = 5/23 (21%), Positives = 12/23 (52%)
Query: 305 QCRFCNKYFSRNYNLKQHMKTCT 327
+C+ C++ ++ N +H T
Sbjct: 12 RCKVCSRVYTHISNFCRHYVTSH 34
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 54.5 bits (132), Expect = 1e-09
Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 8/87 (9%)
Query: 155 FECYV--CSKVLATSHSLKRHLLIHNGPK-YTC--EICAKEFTRVYELNIHKKLHEDESV 209
+ C+ C K + LK H H Y C E C K F+ L H+K+H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 210 ANQLKCEFCGKVFLKKSNLKAHIENNH 236
K + C V + H+ H
Sbjct: 62 K---KDDSCSFVGKTWTLYLKHVAECH 85
Score = 51.1 bits (123), Expect = 2e-08
Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 16/91 (17%)
Query: 124 LHECDL--CGKNFSQRNNLKRHLEEVHRT-DGMK-FEC--YVCSKVLATSHSLKRHLLIH 177
++ C CGK F + N LK H + +EC C K + LKRH +H
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQ----FSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVH 56
Query: 178 NGPK----YTCEICAKEFTRVYELNIHKKLH 204
G +C K +T L + H
Sbjct: 57 AGYPCKKDDSCSFVGKTWTLY--LKHVAECH 85
Score = 45.7 bits (109), Expect = 2e-06
Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 5/78 (6%)
Query: 20 CELCYKVFESRENLMRHLKIHDDKESKRFKCEQ--CDKRFSSNAELNKHSSAIHQRLKLH 77
E C K F+ L H H + ++C CDKRFS + L +H +H
Sbjct: 6 FENCGKAFKKHNQLKVHQFSHTQQ--LPYECPHEGCDKRFSLPSRLKRH-EKVHAGYPCK 62
Query: 78 ECDLCGKNFSQRNNLKRQ 95
+ D C +
Sbjct: 63 KDDSCSFVGKTWTLYLKH 80
Score = 44.5 bits (106), Expect = 4e-06
Identities = 22/105 (20%), Positives = 32/105 (30%), Gaps = 31/105 (29%)
Query: 50 CEQCDKRFSSNAELNKHSSAIHQRLKLHECD--LCGKNFSQRNNLKRQANGSNVNNRFSS 107
E C K F + +L H H + +EC C K FS + LKR
Sbjct: 6 FENCGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKR------------- 51
Query: 108 NAELNKHSSAIHQR----LKLHECDLCGKNFSQRNNLKRHLEEVH 148
H++ + D C +H+ E H
Sbjct: 52 -----------HEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 44.5 bits (106), Expect = 4e-06
Identities = 26/137 (18%), Positives = 34/137 (24%), Gaps = 58/137 (42%)
Query: 664 PCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRC--ELCDKS 721
C K F + + LK H HTQ P C E CDK
Sbjct: 5 HFENCGKAFKKHNQLKVHQFS-HTQQLP---------------------YECPHEGCDKR 42
Query: 722 FTRKDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILCKICN 781
F+ LK+H ++ H G K C+
Sbjct: 43 FSLPSRLKRHEKV-HAGYPCKK---------------------------------DDSCS 68
Query: 782 RTFTRNYNLKKHMKTVH 798
KH+ H
Sbjct: 69 FVGKTWTLYLKHVAECH 85
Score = 39.9 bits (94), Expect = 2e-04
Identities = 18/74 (24%), Positives = 24/74 (32%), Gaps = 12/74 (16%)
Query: 6 SEHIKSHE--------YVENHMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRF 57
+K H+ Y H E C K F L RH K+H K + C
Sbjct: 16 HNQLKVHQFSHTQQLPYECPH--EGCDKRFSLPSRLKRHEKVH--AGYPCKKDDSCSFVG 71
Query: 58 SSNAELNKHSSAIH 71
+ KH + H
Sbjct: 72 KTWTLYLKHVAECH 85
Score = 34.5 bits (80), Expect = 0.014
Identities = 15/78 (19%), Positives = 19/78 (24%), Gaps = 31/78 (39%)
Query: 452 CLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQCRIC 511
C K F+ LK+H KV H G + C
Sbjct: 39 CDKRFSLPSRLKRHEKV-HA-------------------------GYPCK-----KDDSC 67
Query: 512 SKTFTRKDSLRKHMRRFH 529
S KH+ H
Sbjct: 68 SFVGKTWTLYLKHVAECH 85
Score = 32.2 bits (74), Expect = 0.11
Identities = 22/115 (19%), Positives = 29/115 (25%), Gaps = 39/115 (33%)
Query: 214 KCEF--CGKVFLKKSNLKAH--IENNHLDYSCLECKAVGEEISFDTKKNLLLHLKTKHKN 269
C F CGK F K + LK H L Y C
Sbjct: 3 VCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEG------------------------ 38
Query: 270 VISNVYLTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMK 324
C K F L +H K+H + C+ +H+
Sbjct: 39 -----------CDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVA 82
Score = 31.8 bits (73), Expect = 0.13
Identities = 22/137 (16%), Positives = 31/137 (22%), Gaps = 60/137 (43%)
Query: 452 CLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQCRIC 511
C K F K + LK H HT + P EG C
Sbjct: 9 CGKAFKKHNQLKVHQFS-HT-----------QQ-LPYECP---HEG-------------C 39
Query: 512 SKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIPCELCY 571
K F+ L++H + H + + C
Sbjct: 40 DKRFSLPSRLKRHEKV-H----AGYPCK--------------------------KDDSCS 68
Query: 572 KTFTRKDSLRKHMKIFH 588
KH+ H
Sbjct: 69 FVGKTWTLYLKHVAECH 85
Score = 30.7 bits (70), Expect = 0.38
Identities = 15/47 (31%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 281 CFKTFLTEVDLGKHMKMHMDDNQIQCRF--CNKYFSRNYNLKQHMKT 325
C K F L H H +C C+K FS LK+H K
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKV 55
Score = 28.4 bits (64), Expect = 2.1
Identities = 17/87 (19%), Positives = 24/87 (27%), Gaps = 38/87 (43%)
Query: 511 CSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIP--C- 567
C K F + + L+ H H T P C
Sbjct: 9 CGKAFKKHNQLKVHQFS-H----TQQL----------------------------PYECP 35
Query: 568 -ELCYKTFTRKDSLRKHMKIFHTRRNP 593
E C K F+ L++H K+ H
Sbjct: 36 HEGCDKRFSLPSRLKRHEKV-HAGYPC 61
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 53.6 bits (130), Expect = 2e-09
Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 167 SHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKK 225
H H + + K Y C+ C F L HK +H E +C CG F +
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHKTVHTGE---KPYRCNICGAQFNRP 58
Query: 226 SNLKAH 231
+NLK H
Sbjct: 59 ANLKTH 64
Score = 50.1 bits (121), Expect = 3e-08
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 32 NLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNN 91
+ H + K +KC++C F L H + +H K + C++CG F++ N
Sbjct: 4 HHHHHSHMTHSD--KPYKCDRCQASFRYKGNLASHKT-VHTGEKPYRCNICGAQFNRPAN 60
Query: 92 LKR 94
LK
Sbjct: 61 LKT 63
Score = 49.0 bits (118), Expect = 8e-08
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 32/83 (38%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRL-- 122
H + K ++CD C +F + NL A H+ +
Sbjct: 6 HHHSHMTHSDKPYKCDRCQASFRYKGNL------------------------ASHKTVHT 41
Query: 123 --KLHECDLCGKNFSQRNNLKRH 143
K + C++CG F++ NLK H
Sbjct: 42 GEKPYRCNICGAQFNRPANLKTH 64
Score = 49.0 bits (118), Expect = 1e-07
Identities = 22/93 (23%), Positives = 31/93 (33%), Gaps = 35/93 (37%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKR 172
H + K ++CD C +F + NL H K
Sbjct: 6 HHHSHMTHSDKPYKCDRCQASFRYKGNLASH---------------------------KT 38
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
+H G K Y C IC +F R L H ++H
Sbjct: 39 ---VHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 42.8 bits (102), Expect = 2e-05
Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 23/74 (31%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C C +F K +L H + HT +P RC +C F R
Sbjct: 20 CDRCQASFRYKGNLASHKTV-HTGEKP---------------------YRCNICGAQFNR 57
Query: 725 KDSLKKHNRIFHGG 738
+LK H RI H G
Sbjct: 58 PANLKTHTRI-HSG 70
Score = 42.1 bits (100), Expect = 2e-05
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 20 CELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKH 66
C+ C F + NL H +H + K ++C C +F+ A L H
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGE--KPYRCNICGAQFNRPANLKTH 64
Score = 35.1 bits (82), Expect = 0.008
Identities = 21/78 (26%), Positives = 26/78 (33%), Gaps = 31/78 (39%)
Query: 449 CHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQC 508
C C +F K +L H V HT GE KP +C
Sbjct: 20 CDRCQASFRYKGNLASHKTV-HT-----------GE-KP------------------YRC 48
Query: 509 RICSKTFTRKDSLRKHMR 526
IC F R +L+ H R
Sbjct: 49 NICGAQFNRPANLKTHTR 66
Score = 33.6 bits (78), Expect = 0.028
Identities = 19/84 (22%), Positives = 25/84 (29%), Gaps = 36/84 (42%)
Query: 714 RCELCDKSFTRKDSLKKHNRIFHGGADP-KVMDEQMARGSADFLEVVLNEDGEGEPVSIT 772
+C+ C SF K +L H + H G P +
Sbjct: 19 KCDRCQASFRYKGNLASHKTV-HTGEKPYR------------------------------ 47
Query: 773 NEILCKICNRTFTRNYNLKKHMKT 796
C IC F R NLK H +
Sbjct: 48 ----CNICGAQFNRPANLKTHTRI 67
Score = 32.4 bits (75), Expect = 0.065
Identities = 14/50 (28%), Positives = 23/50 (46%)
Query: 278 CLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
C C +F + +L H +H + +C C F+R NLK H + +
Sbjct: 20 CDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHS 69
Score = 32.0 bits (74), Expect = 0.10
Identities = 18/84 (21%), Positives = 25/84 (29%), Gaps = 36/84 (42%)
Query: 508 CRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIP- 566
C C +F K +L H H T K P
Sbjct: 20 CDRCQASFRYKGNLASHKT-VH----TGEK----------------------------PY 46
Query: 567 -CELCYKTFTRKDSLRKHMKIFHT 589
C +C F R +L+ H +I H+
Sbjct: 47 RCNICGAQFNRPANLKTHTRI-HS 69
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 52.1 bits (126), Expect = 5e-09
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 28/78 (35%)
Query: 75 KLHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRL----KLHECDLC 130
+ C++C + F+++ +LKR H R K + C LC
Sbjct: 1 RSFVCEVCTRAFARQEHLKR------------------------HYRSHTNEKPYPCGLC 36
Query: 131 GKNFSQRNNLKRHLEEVH 148
+ F++R+ L RH +++H
Sbjct: 37 NRAFTRRDLLIRHAQKIH 54
Score = 47.9 bits (115), Expect = 2e-07
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 22/74 (29%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C +C + F R++ LK+H R HT +P C LC+++FTR
Sbjct: 5 CEVCTRAFARQEHLKRHYRS-HTNEKPYP---------------------CGLCNRAFTR 42
Query: 725 KDSLKKHNRIFHGG 738
+D L +H + H G
Sbjct: 43 RDLLIRHAQKIHSG 56
Score = 47.5 bits (114), Expect = 2e-07
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKR 94
+ F CE C + F+ L +H H K + C LC + F++R+ L R
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIR 48
Score = 46.7 bits (112), Expect = 4e-07
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 20 CELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIH 71
CE+C + F +E+L RH + H E K + C C++ F+ L +H+ IH
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHT-NE-KPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 42.9 bits (102), Expect = 8e-06
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIH-KKLH 204
F C VC++ A LKRH H K Y C +C + FTR L H +K+H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 41.3 bits (98), Expect = 4e-05
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 31/82 (37%)
Query: 448 QCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQ 507
C +C + FA+++ LK+H + HT E KP
Sbjct: 4 VCEVCTRAFARQEHLKRHYRS-HT-----------NE-KP------------------YP 32
Query: 508 CRICSKTFTRKDSLRKHMRRFH 529
C +C++ FTR+D L +H ++ H
Sbjct: 33 CGLCNRAFTRRDLLIRHAQKIH 54
Score = 41.3 bits (98), Expect = 4e-05
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 182 YTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHIENNH 236
+ CE+C + F R L H + H +E C C + F ++ L H + H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNE---KPYPCGLCNRAFTRRDLLIRHAQKIH 54
Score = 37.1 bits (87), Expect = 0.001
Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 34/84 (40%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNE 774
CE+C ++F R++ LK+H R H P
Sbjct: 5 CEVCTRAFARQEHLKRHYRS-HTNEKPYP------------------------------- 32
Query: 775 ILCKICNRTFTRNYNLKKHMKTVH 798
C +CNR FTR L +H + +H
Sbjct: 33 --CGLCNRAFTRRDLLIRHAQKIH 54
Score = 35.5 bits (83), Expect = 0.004
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 35/85 (41%)
Query: 507 QCRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIP 566
C +C++ F R++ L++H R H TN K P
Sbjct: 4 VCEVCTRAFARQEHLKRHYR-SH----TNEK----------------------------P 30
Query: 567 --CELCYKTFTRKDSLRKHMKIFHT 589
C LC + FTR+D L +H + H+
Sbjct: 31 YPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 31.3 bits (72), Expect = 0.13
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 278 CLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMK 324
C +C + F + L +H + H ++ C CN+ F+R L +H +
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQ 51
Score = 28.6 bits (65), Expect = 0.95
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 448 QCHICLKTFAKKDSLKKHMKVFHT 471
C +C + F ++D L +H + H+
Sbjct: 32 PCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 27.1 bits (61), Expect = 3.5
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 305 QCRFCNKYFSRNYNLKQHMKT 325
C C + F+R +LK+H ++
Sbjct: 4 VCEVCTRAFARQEHLKRHYRS 24
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 52.4 bits (127), Expect = 5e-09
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 32 NLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNN 91
+ R +E +R+KC++C K FS +++L+KH H K ++CD CGK F QR++
Sbjct: 5 SSGRSEWQQ--RERRRYKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSH 61
Query: 92 L 92
L
Sbjct: 62 L 62
Score = 48.2 bits (116), Expect = 2e-07
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Query: 165 ATSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFL 223
+S S R + Y C+ C K F+ +L+ H++ H E KC+ CGK F+
Sbjct: 1 GSSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE---KPYKCDECGKAFI 57
Query: 224 KKSNLKAH 231
++S+L H
Sbjct: 58 QRSHLIGH 65
Score = 46.7 bits (112), Expect = 7e-07
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 12/76 (15%)
Query: 114 HSS--AIHQRL----KLHECDLCGKNFSQRNNLKRHLEEVHRT-DGMK-FECYVCSKVLA 165
S + + ++CD CGK+FS ++L +H RT G K ++C C K
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKH----RRTHTGEKPYKCDECGKAFI 57
Query: 166 TSHSLKRHLLIHNGPK 181
L H +H G
Sbjct: 58 QRSHLIGHHRVHTGSG 73
Score = 38.2 bits (90), Expect = 6e-04
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 20 CELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKH 66
C+ C K F +L +H + H + K +KC++C K F + L H
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGE--KPYKCDECGKAFIQRSHLIGH 65
Score = 36.7 bits (86), Expect = 0.002
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 23/77 (29%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C C K+F+ L KH R HT +P +C+ C K+F +
Sbjct: 21 CDECGKSFSHSSDLSKHRRT-HTGEKP---------------------YKCDECGKAFIQ 58
Query: 725 KDSLKKHNRIFHGGADP 741
+ L H+R+ H G+ P
Sbjct: 59 RSHLIGHHRV-HTGSGP 74
Score = 28.2 bits (64), Expect = 2.0
Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 12/69 (17%)
Query: 197 LNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAH--IENNHLDYSCLEC-KAVGEEISF 253
+ + + KC+ CGK F S+L H Y C EC KA F
Sbjct: 6 SGRSEWQQRER---RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKA------F 56
Query: 254 DTKKNLLLH 262
+ +L+ H
Sbjct: 57 IQRSHLIGH 65
Score = 27.8 bits (63), Expect = 3.0
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 278 CLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQH 322
C C K+F DL KH + H + +C C K F + +L H
Sbjct: 21 CDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 27.4 bits (62), Expect = 3.6
Identities = 21/85 (24%), Positives = 29/85 (34%), Gaps = 36/85 (42%)
Query: 507 QCRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIP 566
+C C K+F+ L KH RR H T K P
Sbjct: 20 KCDECGKSFSHSSDLSKH-RRTH----TGEK----------------------------P 46
Query: 567 --CELCYKTFTRKDSLRKHMKIFHT 589
C+ C K F ++ L H ++ HT
Sbjct: 47 YKCDECGKAFIQRSHLIGHHRV-HT 70
Score = 27.4 bits (62), Expect = 3.9
Identities = 20/79 (25%), Positives = 27/79 (34%), Gaps = 31/79 (39%)
Query: 448 QCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQ 507
+C C K+F+ L KH + HT GE KP +
Sbjct: 20 KCDECGKSFSHSSDLSKHRRT-HT-----------GE-KP------------------YK 48
Query: 508 CRICSKTFTRKDSLRKHMR 526
C C K F ++ L H R
Sbjct: 49 CDECGKAFIQRSHLIGHHR 67
Score = 27.0 bits (61), Expect = 6.0
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 290 DLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
G+ + + +C C K FS + +L +H +T T
Sbjct: 5 SSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHT 42
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 53.2 bits (127), Expect = 9e-09
Identities = 20/117 (17%), Positives = 36/117 (30%), Gaps = 20/117 (17%)
Query: 29 SRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKH-SSAIHQRLKLHECDLCGKNFS 87
S + + I + +F+C+ C + + EL H + H R HE D
Sbjct: 3 SGSSGKLYGSIF--TGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRW 60
Query: 88 QRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRHL 144
+ + K+ +C CG +F +L H+
Sbjct: 61 SKPRKRSLLEM-----------------EGKEDAQKVLKCMYCGHSFESLQDLSVHM 100
Score = 52.8 bits (126), Expect = 1e-08
Identities = 24/106 (22%), Positives = 36/106 (33%), Gaps = 6/106 (5%)
Query: 135 SQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHNGPKYTCEICAKEFTRV 194
S ++ K + + T KF C CS T L H+ + +
Sbjct: 2 SSGSSGKLY-GSIF-TGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKR 59
Query: 195 YELNIHKKLHE---DESVANQLKCEFCGKVFLKKSNLKAH-IENNH 236
+ + L E E LKC +CG F +L H I+ H
Sbjct: 60 WSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKH 105
Score = 48.6 bits (115), Expect = 3e-07
Identities = 21/113 (18%), Positives = 31/113 (27%), Gaps = 7/113 (6%)
Query: 106 SSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRHLEEV-HRTDG--MKFECYVCSK 162
SS + + S I C C + L H+ E H D
Sbjct: 2 SSGSSGKLYGS-IFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRW 60
Query: 163 VLATSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIH--KKLHEDESVANQ 212
SL + K C C F + +L++H K H +
Sbjct: 61 SKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTKHYQKVSGPS 113
Score = 47.8 bits (113), Expect = 7e-07
Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 8/102 (7%)
Query: 226 SNLKAH--IENNHLDYSCLECKAVGEEISFDTKKNLLLHLK-TKHKNVISNVYLTCLICF 282
S+ K + I + C +C A ++DT L +H+ T H ++
Sbjct: 5 SSGKLYGSIFTGASKFRCKDCSA-----AYDTLVELTVHMNETGHYRDDNHETDNNNPKR 59
Query: 283 KTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMK 324
+ + L + ++C +C F +L HM
Sbjct: 60 WSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMI 101
Score = 45.9 bits (108), Expect = 4e-06
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 3/95 (3%)
Query: 507 QCRICSKTFTRKDSLRKHMRRFHIINDTNVK--KEFTEGQINRNMLDVILKESGHEIKSR 564
+C+ CS + L HM D N + + ++ E + +
Sbjct: 21 RCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKV 80
Query: 565 IPCELCYKTFTRKDSLRKHM-KIFHTRRNPSANSG 598
+ C C +F L HM K H ++ +SG
Sbjct: 81 LKCMYCGHSFESLQDLSVHMIKTKHYQKVSGPSSG 115
Score = 44.4 bits (104), Expect = 1e-05
Identities = 16/102 (15%), Positives = 30/102 (29%), Gaps = 6/102 (5%)
Query: 428 SNTNNHGSGSTNNTQANKIIQCHICLKTFAKKDSLKKHMKVFH--TYISPDAIKEESGEG 485
S+ +GS T +C C + L HM + +
Sbjct: 5 SSGKLYGSIFT----GASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRW 60
Query: 486 KPNILEVILQEGKVPNNNAIIQCRICSKTFTRKDSLRKHMRR 527
+L+ + +++C C +F L HM +
Sbjct: 61 SKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIK 102
Score = 42.4 bits (99), Expect = 5e-05
Identities = 11/77 (14%), Positives = 24/77 (31%), Gaps = 2/77 (2%)
Query: 20 CELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSS--AIHQRLKLH 77
C+ C +++ L H+ + + + + S K+
Sbjct: 22 CKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVL 81
Query: 78 ECDLCGKNFSQRNNLKR 94
+C CG +F +L
Sbjct: 82 KCMYCGHSFESLQDLSV 98
Score = 41.7 bits (97), Expect = 9e-05
Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 4/92 (4%)
Query: 712 RIRCELCDKSFTRKDSLKKH-NRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVS 770
+ RC+ C ++ L H N H D D + + + L E E
Sbjct: 19 KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQ 78
Query: 771 ITNEILCKICNRTFTRNYNLKKHM-KTVHKID 801
+ C C +F +L HM KT H
Sbjct: 79 --KVLKCMYCGHSFESLQDLSVHMIKTKHYQK 108
Score = 33.2 bits (75), Expect = 0.093
Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 11/78 (14%)
Query: 665 CTLCDKTFTRKDSLKKHIRIF-HTQNQPQHTNVIEVALGARANAAFIDR----------I 713
C C + L H+ H ++ T+ ++ + +
Sbjct: 22 CKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVL 81
Query: 714 RCELCDKSFTRKDSLKKH 731
+C C SF L H
Sbjct: 82 KCMYCGHSFESLQDLSVH 99
Score = 30.1 bits (67), Expect = 1.1
Identities = 8/46 (17%), Positives = 15/46 (32%)
Query: 559 HEIKSRIPCELCYKTFTRKDSLRKHMKIFHTRRNPSANSGNSGTSA 604
S+ C+ C + L HM R+ + + N+
Sbjct: 14 FTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKR 59
Score = 29.3 bits (65), Expect = 1.9
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 777 CKICNRTFTRNYNLKKHMK-TVHKIDDNE 804
CK C+ + L HM T H DDN
Sbjct: 22 CKDCSAAYDTLVELTVHMNETGHYRDDNH 50
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 53.8 bits (128), Expect = 9e-09
Identities = 20/110 (18%), Positives = 35/110 (31%), Gaps = 7/110 (6%)
Query: 127 CDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHNGPKYTCEI 186
+ + + + L + + R ++L S L R L ++ C +
Sbjct: 22 IHVTLEELKRYHQLTPEQKRLIRAIVKTLIH--NPQLLDESSYLYRLLASKAISQFVCPL 79
Query: 187 CAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHIENNH 236
C F+ L H + E V C C K F + H+ H
Sbjct: 80 CLMPFSSSVSLKQHIRYTEHTKV-----CPVCKKEFTSTDSALDHVCKKH 124
Score = 41.5 bits (96), Expect = 2e-04
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 8 HIKSHEYVENHMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHS 67
+ + + + +C LC F S +L +H++ + C C K F+S H
Sbjct: 65 RLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE----HTKVCPVCKKEFTSTDSALDHV 120
Query: 68 SAIH 71
H
Sbjct: 121 CKKH 124
Score = 36.5 bits (83), Expect = 0.008
Identities = 17/115 (14%), Positives = 39/115 (33%), Gaps = 14/115 (12%)
Query: 213 LKCEFCGKVFLKKSNLKAHIEN--NHLDYSCLECKAVGEEISFDTKKNLLLHLKTKHKNV 270
+ + + L + + + + + +E S+ L L +K +
Sbjct: 20 IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSY-----LYRLLASKAISQ 74
Query: 271 ISNVYLTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKT 325
C +C F + V L +H++ ++ C C K F+ + H+
Sbjct: 75 -----FVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCK 122
Score = 36.5 bits (83), Expect = 0.009
Identities = 24/144 (16%), Positives = 44/144 (30%), Gaps = 33/144 (22%)
Query: 11 SHEYVENH---MCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHS 67
S +Y+ NH + + + L K K + ++ L +
Sbjct: 10 SKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVK--TLIHNPQLLDESSYLYRLL 67
Query: 68 SAIHQRLKLHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRLKLHE- 126
+ + + C LC FS +LK+ H R H
Sbjct: 68 A--SKAISQFVCPLCLMPFSSSVSLKQ------------------------HIRYTEHTK 101
Query: 127 -CDLCGKNFSQRNNLKRHLEEVHR 149
C +C K F+ ++ H+ + H
Sbjct: 102 VCPVCKKEFTSTDSALDHVCKKHN 125
Score = 34.1 bits (77), Expect = 0.057
Identities = 29/156 (18%), Positives = 45/156 (28%), Gaps = 37/156 (23%)
Query: 435 SGSTNNTQANKIIQCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVIL 494
SGS +K I H+ L+ + L K I I + + L +L
Sbjct: 8 SGSKKYLSNHKGIFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDESSYLYRLL 67
Query: 495 QEGKVPNNNAIIQCRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVIL 554
+ + C +C F+ SL++H+R
Sbjct: 68 ASKAI----SQFVCPLCLMPFSSSVSLKQHIRYTE------------------------- 98
Query: 555 KESGHEIKSRIPCELCYKTFTRKDSLRKHMKIFHTR 590
C +C K FT DS H+ H
Sbjct: 99 --------HTKVCPVCKKEFTSTDSALDHVCKKHNI 126
Score = 34.1 bits (77), Expect = 0.059
Identities = 19/75 (25%), Positives = 22/75 (29%), Gaps = 24/75 (32%)
Query: 664 PCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFT 723
C LC F+ SLK+HIR C +C K FT
Sbjct: 76 VCPLCLMPFSSSVSLKQHIRYTE------------------------HTKVCPVCKKEFT 111
Query: 724 RKDSLKKHNRIFHGG 738
DS H H
Sbjct: 112 STDSALDHVCKKHNI 126
Score = 33.4 bits (75), Expect = 0.089
Identities = 22/118 (18%), Positives = 33/118 (27%), Gaps = 8/118 (6%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNGPKYTCEICAKEFTRVYELNIHKKLHEDESVANQLK 214
+V + L H L I + + + +Q
Sbjct: 20 IFIHVTLEELKRYHQLTPEQKRLIRAIVKTLIHNPQLLDE---SSYLYRLLASKAISQFV 76
Query: 215 CEFCGKVFLKKSNLKAHIENNHLDYSCLECKAVGEEISFDTKKNLLLHLKTKHKNVIS 272
C C F +LK HI C CK F + + L H+ KH +S
Sbjct: 77 CPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKK-----EFTSTDSALDHVCKKHNICVS 129
Score = 29.5 bits (65), Expect = 2.3
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 777 CKICNRTFTRNYNLKKHMKTVHK 799
C +C F+ + +LK+H++
Sbjct: 77 CPLCLMPFSSSVSLKQHIRYTEH 99
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 50.2 bits (121), Expect = 3e-08
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKR 94
KC +C SS A L H IH + +C+ C + Q +NL +
Sbjct: 8 HPEKCSECSYSCSSKAALRIH-ERIHCTDRPFKCNYCSFDTKQPSNLSK 55
Score = 49.0 bits (118), Expect = 8e-08
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 22/73 (30%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C+ C + + K +L+ H RI H ++P +C C +
Sbjct: 12 CSECSYSCSSKAALRIHERI-HCTDRP---------------------FKCNYCSFDTKQ 49
Query: 725 KDSLKKHNRIFHG 737
+L KH + FHG
Sbjct: 50 PSNLSKHMKKFHG 62
Score = 45.6 bits (109), Expect = 1e-06
Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
Query: 18 HMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIH 71
C C S+ L H +IH + FKC C + L+KH
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTD--RPFKCNYCSFDTKQPSNLSKH-MKKF 60
Score = 44.8 bits (107), Expect = 2e-06
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Query: 123 KLHECDLCGKNFSQRNNLKRHLEEVHRT-DGMK-FECYVCSKVLATSHSLKRHLLIHNGP 180
+C C + S + L+ H R + F+C CS +L +H+ +G
Sbjct: 8 HPEKCSECSYSCSSKAALRIH----ERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
Query: 181 K 181
Sbjct: 64 M 64
Score = 44.0 bits (105), Expect = 4e-06
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 28/74 (37%)
Query: 75 KLHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRL----KLHECDLC 130
+C C + S + L+ H+R+ + +C+ C
Sbjct: 8 HPEKCSECSYSCSSKAALRI------------------------HERIHCTDRPFKCNYC 43
Query: 131 GKNFSQRNNLKRHL 144
+ Q +NL +H+
Sbjct: 44 SFDTKQPSNLSKHM 57
Score = 42.5 bits (101), Expect = 2e-05
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
+C CS ++ +L+ H IH + + C C+ + + L+ H K
Sbjct: 10 EKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKF 60
Score = 41.7 bits (99), Expect = 3e-05
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 177 HNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAH 231
+ C C+ + L IH+++H + KC +C + SNL H
Sbjct: 4 GSSGHPEKCSECSYSCSSKAALRIHERIHCTD---RPFKCNYCSFDTKQPSNLSKH 56
Score = 37.1 bits (87), Expect = 0.001
Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 31/78 (39%)
Query: 449 CHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQC 508
C C + + K +L+ H ++ H + +P +C
Sbjct: 12 CSECSYSCSSKAALRIHERI-HC-----------TD-RP------------------FKC 40
Query: 509 RICSKTFTRKDSLRKHMR 526
CS + +L KHM+
Sbjct: 41 NYCSFDTKQPSNLSKHMK 58
Score = 36.3 bits (85), Expect = 0.002
Identities = 17/84 (20%), Positives = 23/84 (27%), Gaps = 36/84 (42%)
Query: 508 CRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIP- 566
C CS + + K +LR H R H + P
Sbjct: 12 CSECSYSCSSKAALRIHERI-H----CTDR----------------------------PF 38
Query: 567 -CELCYKTFTRKDSLRKHMKIFHT 589
C C + +L KHMK
Sbjct: 39 KCNYCSFDTKQPSNLSKHMKK-FH 61
Score = 34.8 bits (81), Expect = 0.009
Identities = 19/83 (22%), Positives = 24/83 (28%), Gaps = 36/83 (43%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP-KVMDEQMARGSADFLEVVLNEDGEGEPVSITN 773
C C S + K +L+ H RI H P K
Sbjct: 12 CSECSYSCSSKAALRIHERI-HCTDRPFK------------------------------- 39
Query: 774 EILCKICNRTFTRNYNLKKHMKT 796
C C+ + NL KHMK
Sbjct: 40 ---CNYCSFDTKQPSNLSKHMKK 59
Score = 34.8 bits (81), Expect = 0.009
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 278 CLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
C C + ++ L H ++H D +C +C+ + NL +HMK
Sbjct: 12 CSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFH 61
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 49.8 bits (120), Expect = 4e-08
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 33 LMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNL 92
IH + K + C +C K FS ++ L +H +H K ++C CGK FSQ + L
Sbjct: 2 SSGSSGIHSGE--KPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGL 58
Score = 47.5 bits (114), Expect = 3e-07
Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 32/81 (39%)
Query: 71 HQRL----KLHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRL---- 122
+ K + C CGK FS+ + L HQR+
Sbjct: 5 SSGIHSGEKPYGCVECGKAFSRSSIL------------------------VQHQRVHTGE 40
Query: 123 KLHECDLCGKNFSQRNNLKRH 143
K ++C CGK FSQ + L H
Sbjct: 41 KPYKCLECGKAFSQNSGLINH 61
Score = 46.7 bits (112), Expect = 6e-07
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 170 LKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNL 228
IH+G K Y C C K F+R L H+++H E KC CGK F + S L
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE---KPYKCLECGKAFSQNSGL 58
Query: 229 KAH 231
H
Sbjct: 59 INH 61
Score = 45.5 bits (109), Expect = 2e-06
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Query: 119 HQRL----KLHECDLCGKNFSQRNNLKRHLEEVHRT-DGMK-FECYVCSKVLATSHSLKR 172
+ K + C CGK FS+ + L +H R G K ++C C K + + L
Sbjct: 5 SSGIHSGEKPYGCVECGKAFSRSSILVQH----QRVHTGEKPYKCLECGKAFSQNSGLIN 60
Query: 173 HLLIHNGPK 181
H IH
Sbjct: 61 HQRIHTSGP 69
Score = 40.9 bits (97), Expect = 6e-05
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 20 CELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKH 66
C C K F L++H ++H + K +KC +C K FS N+ L H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGE--KPYKCLECGKAFSQNSGLINH 61
Score = 39.4 bits (93), Expect = 2e-04
Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 23/77 (29%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C C K F+R L +H R+ HT +P +C C K+F++
Sbjct: 17 CVECGKAFSRSSILVQHQRV-HTGEKP---------------------YKCLECGKAFSQ 54
Query: 725 KDSLKKHNRIFHGGADP 741
L H RI H
Sbjct: 55 NSGLINHQRI-HTSGPS 70
Score = 30.9 bits (71), Expect = 0.21
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 278 CLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQH 322
C+ C K F L +H ++H + +C C K FS+N L H
Sbjct: 17 CVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
Score = 30.1 bits (69), Expect = 0.43
Identities = 20/79 (25%), Positives = 27/79 (34%), Gaps = 31/79 (39%)
Query: 448 QCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQ 507
C C K F++ L +H +V HT GE KP +
Sbjct: 16 GCVECGKAFSRSSILVQHQRV-HT-----------GE-KP------------------YK 44
Query: 508 CRICSKTFTRKDSLRKHMR 526
C C K F++ L H R
Sbjct: 45 CLECGKAFSQNSGLINHQR 63
Score = 29.0 bits (66), Expect = 0.89
Identities = 22/91 (24%), Positives = 28/91 (30%), Gaps = 36/91 (39%)
Query: 507 QCRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIP 566
C C K F+R L +H +R H T K P
Sbjct: 16 GCVECGKAFSRSSILVQH-QRVH----TGEK----------------------------P 42
Query: 567 --CELCYKTFTRKDSLRKHMKIFHTRRNPSA 595
C C K F++ L H +I HT S
Sbjct: 43 YKCLECGKAFSQNSGLINHQRI-HTSGPSSG 72
Score = 26.3 bits (59), Expect = 9.5
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 291 LGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQH 322
+H + C C K FSR+ L QH
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQH 33
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 48.8 bits (117), Expect = 9e-08
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 3/61 (4%)
Query: 36 HLKIHDDKESKRFKC--EQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLK 93
+L + + + + C E CD+RFS + EL +H IH K +C +C +NFS+ ++L
Sbjct: 8 NLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLT 66
Query: 94 R 94
Sbjct: 67 T 67
Score = 48.5 bits (116), Expect = 1e-07
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 134 FSQRNNLKRHLEEVHRTDGMKFECYV--CSKVLATSHSLKRHLLIHNGPK-YTCEICAKE 190
NNL ++ + C V C + + S L RH+ IH G K + C IC +
Sbjct: 3 PHPMNNLLNYV----VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRN 58
Query: 191 FTRVYELNIHKKLH 204
F+R L H + H
Sbjct: 59 FSRSDHLTTHIRTH 72
Score = 48.1 bits (115), Expect = 2e-07
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 22/67 (32%)
Query: 668 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDS 727
CD+ F+R D L +HIRI HT G + +C +C ++F+R D
Sbjct: 27 CDRRFSRSDELTRHIRI--------HT-------GQK-------PFQCRICMRNFSRSDH 64
Query: 728 LKKHNRI 734
L H R
Sbjct: 65 LTTHIRT 71
Score = 41.5 bits (98), Expect = 4e-05
Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 32/79 (40%)
Query: 511 CSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIPCELC 570
C + F+R D L +H+R H T K C +C
Sbjct: 27 CDRRFSRSDELTRHIRI-H----TGQK--------------------------PFQCRIC 55
Query: 571 YKTFTRKDSLRKHMKIFHT 589
+ F+R D L H++ HT
Sbjct: 56 MRNFSRSDHLTTHIRT-HT 73
Score = 41.1 bits (97), Expect = 5e-05
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 167 SHSLKRHLLIHNGPKYTC--EICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLK 224
++L +++ P Y C E C + F+R EL H ++H + +C C + F +
Sbjct: 6 MNNLLNYVVPKMRP-YACPVESCDRRFSRSDELTRHIRIHTGQ---KPFQCRICMRNFSR 61
Query: 225 KSNLKAHI 232
+L HI
Sbjct: 62 SDHLTTHI 69
Score = 41.1 bits (97), Expect = 6e-05
Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 31/76 (40%)
Query: 452 CLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNAIIQCRIC 511
C + F++ D L +H+++ HT G+ KP QCRIC
Sbjct: 27 CDRRFSRSDELTRHIRI-HT-----------GQ-KP------------------FQCRIC 55
Query: 512 SKTFTRKDSLRKHMRR 527
+ F+R D L H+R
Sbjct: 56 MRNFSRSDHLTTHIRT 71
Score = 40.8 bits (96), Expect = 7e-05
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 34/81 (41%)
Query: 716 ELCDKSFTRKDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEI 775
E CD+ F+R D L +H RI H G P
Sbjct: 25 ESCDRRFSRSDELTRHIRI-HTGQKP---------------------------------F 50
Query: 776 LCKICNRTFTRNYNLKKHMKT 796
C+IC R F+R+ +L H++T
Sbjct: 51 QCRICMRNFSRSDHLTTHIRT 71
Score = 40.8 bits (96), Expect = 8e-05
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 281 CFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
C + F +L +H+++H QCR C + FSR+ +L H++T T
Sbjct: 27 CDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 40.4 bits (95), Expect = 1e-04
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 21 ELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKH 66
E C + F + L RH++IH + K F+C C + FS + L H
Sbjct: 25 ESCDRRFSRSDELTRHIRIHTGQ--KPFQCRICMRNFSRSDHLTTH 68
Score = 38.8 bits (91), Expect = 3e-04
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 12/71 (16%)
Query: 115 SSAIHQRLKLHE----CDL--CGKNFSQRNNLKRHLEEVHRT-DGMK-FECYVCSKVLAT 166
+ + + C + C + FS+ + L RH+ R G K F+C +C + +
Sbjct: 6 MNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHI----RIHTGQKPFQCRICMRNFSR 61
Query: 167 SHSLKRHLLIH 177
S L H+ H
Sbjct: 62 SDHLTTHIRTH 72
Score = 37.7 bits (88), Expect = 0.001
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 104 RFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRHL 144
RFS + EL +H IH K +C +C +NFS+ ++L H+
Sbjct: 30 RFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHI 69
Score = 35.0 bits (81), Expect = 0.008
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 664 PCTLCDKTFTRKDSLKKHIRIFHT 687
C +C + F+R D L HIR HT
Sbjct: 51 QCRICMRNFSRSDHLTTHIRT-HT 73
Score = 32.3 bits (74), Expect = 0.065
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 448 QCHICLKTFAKKDSLKKHMKVFHT 471
QC IC++ F++ D L H++ HT
Sbjct: 51 QCRICMRNFSRSDHLTTHIRT-HT 73
Score = 28.8 bits (65), Expect = 1.4
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 8 HIKSHEYVENHMCELCYKVFESRENLMRHLKIH 40
HI+ H + C +C + F ++L H++ H
Sbjct: 40 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTH 72
Score = 27.7 bits (62), Expect = 3.5
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 566 PCELCYKTFTRKDSLRKHMKIFHTRRNP 593
P E C + F+R D L +H++I HT + P
Sbjct: 23 PVESCDRRFSRSDELTRHIRI-HTGQKP 49
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 48.0 bits (115), Expect = 1e-07
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQ 88
K + C+ C K FS LN H +H + H+C + S
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS 53
Score = 41.4 bits (98), Expect = 2e-05
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 115 SSAIHQRLKLHECDLCGKNFSQRNNLKRHLEEVHRTDGMK-FECYVCSK 162
S + K + C CGK FS+ ++L H+++VH + +C V
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGHIKQVH--TSERPHKCQVWVS 49
Score = 40.3 bits (95), Expect = 7e-05
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 19/70 (27%)
Query: 67 SSAIHQRLKLHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRLKLHE 126
S + K + C CGK FS+ ++L H +H + H+
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNG-------------------HIKQVHTSERPHK 43
Query: 127 CDLCGKNFSQ 136
C + S
Sbjct: 44 CQVWVSGPSS 53
Score = 36.8 bits (86), Expect = 0.001
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 20 CELCYKVFESRENLMRHLK-IHDDKESKRFKCEQCDKRFSS 59
C+ C K F ++L H+K +H + + KC+ SS
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSE--RPHKCQVWVSGPSS 53
Score = 36.0 bits (84), Expect = 0.002
Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 155 FECYVCSKVLATSHSLKRHL-LIHNGPK-YTCEICAKEFT 192
+ C C K + L H+ +H + + C++ +
Sbjct: 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52
Score = 36.0 bits (84), Expect = 0.002
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 176 IHNGPK-YTCEICAKEFTRVYELNIH-KKLHEDESVANQLKCEFCGKVF 222
+ K Y C+ C K F+R LN H K++H E KC+
Sbjct: 6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSE---RPHKCQVWVSGP 51
Score = 33.3 bits (77), Expect = 0.020
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 214 KCEFCGKVFLKKSNLKAHIENNHLD---YSCLEC 244
C+ CGK F + +L HI+ H + C
Sbjct: 14 ICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 32.2 bits (74), Expect = 0.054
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 21/59 (35%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFT 723
C C K F+R D L HI+ HT +P +C++ +
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHTSERP---------------------HKCQVWVSGPS 52
Score = 31.8 bits (73), Expect = 0.068
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 508 CRICSKTFTRKDSLRKHMRRFH 529
C+ C K F+R D L H+++ H
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVH 36
Score = 31.8 bits (73), Expect = 0.072
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 714 RCELCDKSFTRKDSLKKHNRIFHGG 738
C+ C K F+R D L H + H
Sbjct: 14 ICQSCGKGFSRPDHLNGHIKQVHTS 38
Score = 31.4 bits (72), Expect = 0.10
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C+ C K F+R D L H+K HT
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHT 37
Score = 30.2 bits (69), Expect = 0.23
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 777 CKICNRTFTRNYNLKKHMKTVH 798
C+ C + F+R +L H+K VH
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVH 36
Score = 27.5 bits (62), Expect = 2.3
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 306 CRFCNKYFSRNYNLKQHMK 324
C+ C K FSR +L H+K
Sbjct: 15 CQSCGKGFSRPDHLNGHIK 33
Score = 27.2 bits (61), Expect = 2.8
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 449 CHICLKTFAKKDSLKKHMKVFHT 471
C C K F++ D L H+K HT
Sbjct: 15 CQSCGKGFSRPDHLNGHIKQVHT 37
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 49.2 bits (117), Expect = 2e-07
Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 10/76 (13%)
Query: 118 IHQRLKLHECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCS--------KVLATSHS 169
I + C + FS + L H+ H G + +VC K +
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEH-VGGPEQNNHVCYWEECPREGKSFKAKYK 77
Query: 170 LKRHLLIHNGPK-YTC 184
L H+ +H G K
Sbjct: 78 LVNHIRVHTGEKSGPS 93
Score = 43.0 bits (101), Expect = 2e-05
Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 13/71 (18%)
Query: 664 PCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFT 723
P CD+TF+ L H+ + H Q+ +V C KSF
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCY-------------WEECPREGKSFK 73
Query: 724 RKDSLKKHNRI 734
K L H R+
Sbjct: 74 AKYKLVNHIRV 84
Score = 41.9 bits (98), Expect = 6e-05
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 8/61 (13%)
Query: 42 DKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLH--------ECDLCGKNFSQRNNLK 93
D+ + CD+ FS+ EL H + H EC GK+F + L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 94 R 94
Sbjct: 80 N 80
Score = 37.3 bits (86), Expect = 0.002
Identities = 14/83 (16%), Positives = 24/83 (28%), Gaps = 23/83 (27%)
Query: 507 QCRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIP 566
+ C +TF+ L H+ H+ +
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHV--GGPEQNNHVCYWEE-------------------- 64
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C K+F K L H+++ HT
Sbjct: 65 CPREGKSFKAKYKLVNHIRV-HT 86
Score = 36.5 bits (84), Expect = 0.004
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 8/75 (10%)
Query: 12 HEYVENHMCELCYKVFESRENLMRHL-KIH-DDKESKRFKCE-----QCDKRFSSNAELN 64
E + + C + F + L+ H+ H E C + K F + +L
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLV 79
Query: 65 KHSSAIHQRLKLHEC 79
H +H K
Sbjct: 80 NHIR-VHTGEKSGPS 93
Score = 36.1 bits (83), Expect = 0.006
Identities = 15/83 (18%), Positives = 22/83 (26%), Gaps = 27/83 (32%)
Query: 70 IHQRLKLHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRLKLH---- 125
I + C + FS+ EL H + H
Sbjct: 19 IDEAQLSRPKKSCDR-------------------TFSTMHELVTHVTMEHVGGPEQNNHV 59
Query: 126 ----ECDLCGKNFSQRNNLKRHL 144
EC GK+F + L H+
Sbjct: 60 CYWEECPREGKSFKAKYKLVNHI 82
Score = 36.1 bits (83), Expect = 0.006
Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 10/60 (16%)
Query: 214 KCEFCGKVFLKKSNLKAHIENNHLD------YSCL--ECKAVGEEISFDTKKNLLLHLKT 265
+ C + F L H+ H+ + C EC G+ SF K L+ H++
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGK--SFKAKYKLVNHIRV 84
Score = 35.3 bits (81), Expect = 0.011
Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 7/64 (10%)
Query: 176 IHNGPK-YTCEICAKEFTRVYELNIH-KKLHEDESVANQLKCEF-----CGKVFLKKSNL 228
I + C + F+ ++EL H H N C + GK F K L
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKL 78
Query: 229 KAHI 232
HI
Sbjct: 79 VNHI 82
Score = 34.9 bits (80), Expect = 0.013
Identities = 16/82 (19%), Positives = 22/82 (26%), Gaps = 22/82 (26%)
Query: 445 KIIQCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVPNNNA 504
C +TF+ L H+ + H G V E
Sbjct: 24 LSRPKKSCDRTFSTMHELVTHVTMEHV------------GGPEQNNHVCYWEE------- 64
Query: 505 IIQCRICSKTFTRKDSLRKHMR 526
C K+F K L H+R
Sbjct: 65 ---CPREGKSFKAKYKLVNHIR 83
Score = 33.0 bits (75), Expect = 0.064
Identities = 12/83 (14%), Positives = 22/83 (26%), Gaps = 25/83 (30%)
Query: 714 RCELCDKSFTRKDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITN 773
+ CD++F+ L H + H G +
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEE---------------------- 64
Query: 774 EILCKICNRTFTRNYNLKKHMKT 796
C ++F Y L H++
Sbjct: 65 ---CPREGKSFKAKYKLVNHIRV 84
Score = 32.6 bits (74), Expect = 0.11
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 559 HEIKSRIPCELCYKTFTRKDSLRKHMKIFHTRRNPSAN 596
E + P + C +TF+ L H+ + H N
Sbjct: 20 DEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNN 57
Score = 30.7 bits (69), Expect = 0.49
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 9/58 (15%)
Query: 277 TCLICFKTFLTEVDLGKHM-KMHMDDNQ--------IQCRFCNKYFSRNYNLKQHMKT 325
C +TF T +L H+ H+ + +C K F Y L H++
Sbjct: 27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRV 84
Score = 28.8 bits (64), Expect = 2.2
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 10/72 (13%)
Query: 232 IENNHLDYSCLECKAVGEEISFDTKKNLLLHLKTKHKNVISNVYLTCL-----ICFKTFL 286
I+ L C +F T L+ H+ +H C K+F
Sbjct: 19 IDEAQLSRPKKSCDR-----TFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFK 73
Query: 287 TEVDLGKHMKMH 298
+ L H+++H
Sbjct: 74 AKYKLVNHIRVH 85
Score = 28.4 bits (63), Expect = 2.6
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 777 CKICNRTFTRNYNLKKHMKTVH 798
K C+RTF+ + L H+ H
Sbjct: 28 KKSCDRTFSTMHELVTHVTMEH 49
Score = 27.2 bits (60), Expect = 7.7
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 449 CHICLKTFAKKDSLKKHMKVFHT 471
C K+F K L H++V HT
Sbjct: 65 CPREGKSFKAKYKLVNHIRV-HT 86
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 52.2 bits (124), Expect = 6e-07
Identities = 93/607 (15%), Positives = 176/607 (28%), Gaps = 160/607 (26%)
Query: 294 HMKMHMDDNQIQCRFCNK--------YFSRNYNLKQHMKTCTKNV-SNG----ILNCDDN 340
H HMD + ++ K F N++ K ++ K++ S I+ D
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCK-DVQDMPKSILSKEEIDHIIMSKDA 60
Query: 341 EG----------EYNGHGSHE--ENEDDEDYDDMNEMMLVPVIKMELKEENEENEDRENQ 388
+ E +Y L+ IK E ++ + Q
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK-----FLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 389 SEE--ENYTPVPEVSIKRETDPLSVEDIISAGEVSITPIPQSNTNNH---GSGST---NN 440
+ + + ++ R L + + E+ P N GSG T +
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALL--ELR----PAKNVLIDGVLGSGKTWVALD 169
Query: 441 TQANKIIQCHICLKTF-------AKKDSLKKHMKVFHTYISPD---------AIKEESGE 484
+ +QC + K F +++ + ++ I P+ IK
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 485 GK------------PNILEVILQEGKVPNNNAI----IQCRICSKTFTRK----DSLRKH 524
+ N L ++L V N A + C+I T TR D L
Sbjct: 230 IQAELRRLLKSKPYENCL-LVLLN--VQNAKAWNAFNLSCKILL-T-TRFKQVTDFL-SA 283
Query: 525 MRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIPCELCYKTFTRKDSL-RKH 583
HI D + T + + ++LK + +P E+ T R+ S+ +
Sbjct: 284 ATTTHISLD-HHSMTLTPDE----VKSLLLKYLDCRPQD-LPREVL-TTNPRRLSIIAES 336
Query: 584 MKIFHTRRNPSANSGNSGTSAPPAVKLEQNGGEKVEN--STSVENSTSVE-----NSTSV 636
++ + + +K+ +S+ E + SV
Sbjct: 337 IRDGLATWDN----------------WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 637 -ENSANVENTSSV-----DNRTSVGPVAPIDRIPCTLCDKTFTRKDSLKKHIRIFHTQNQ 690
SA++ + + + + L + K + I I +
Sbjct: 381 FPPSAHI--PTILLSLIWFDVIKSDV----MVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 691 PQHTNVIEVALGARANAAFIDR--IRCELCDKSFTRKDSLKK--HNRI-FH-GGADPKVM 744
+ E AL + + +D I L + ++ I H +
Sbjct: 435 LKVKLENEYAL----HRSIVDHYNIPKTFDSDDLI-PPYLDQYFYSHIGHHLKNIEHPER 489
Query: 745 DEQMARGSAD--FLEVVLNEDG--EGEPVSITNEILCKICNRTFTRNYNLKKHMKTVHKI 800
D FLE + D SI N + + Y K + I
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ------QL-KFY--KPY------I 534
Query: 801 DDNEPYF 807
DN+P +
Sbjct: 535 CDNDPKY 541
Score = 49.9 bits (118), Expect = 4e-06
Identities = 75/508 (14%), Positives = 156/508 (30%), Gaps = 147/508 (28%)
Query: 107 SNAELN---KHSSAIHQRLKLHECDLCGKNFSQRNNLKRHLEEVHRTD------GMKFEC 157
S E++ A+ L+L L K Q +++ +EEV R + +K E
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWT-LLSK---QEEMVQKFVEEVLRINYKFLMSPIKTEQ 102
Query: 158 YVCSKVLATSHSLKRHLLIHNGPKYTCEICAKEF-TRVYE-LNIHKKLHEDESVAN---- 211
+ T +++ ++N ++ AK +R+ L + + L E N
Sbjct: 103 R--QPSMMTRMYIEQRDRLYNDN----QVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 212 ------------------QLKCEFCGKVF-------------LKK-SNLKAHIENNHLDY 239
+++C+ K+F L+ L I+ N +
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN---W 213
Query: 240 SCLECKAVGEEISFDTKKNLLLHLKTKHKNVISNVYLTCLICFKTFLTEVDLGKHMKMHM 299
+ + ++ + + L L + S Y CL+ L V K
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRL------LKSKPYENCLL----VLLNVQNAKAWN-AF 262
Query: 300 DDNQIQCRFCNKYFSRNYNLKQHMKTCTKNVSNGILNCDDNEGEYNGHGSHEENEDDEDY 359
+ + C+ L + T K V++ + H S + +
Sbjct: 263 N---LSCKI----------L---LTTRFKQVTDFL------SAATTTHISLDHHSMTLTP 300
Query: 360 DDMNEMMLVPVIKMELKEENEENEDRENQSEEENYTPVPEVSIKRETDPLSVEDIISAGE 419
D++ +L+ + ++ +P + T+P + II+
Sbjct: 301 DEVKS-LLLKYLDCRPQD-------------------LPREVLT--TNPRRL-SIIAE-S 336
Query: 420 VSITPIPQSNTNNHGSGSTNNTQANKIIQCHICLKTFAKKDSLKKHMK---VF--HTYIS 474
+ N + N + II+ L + +K VF +I
Sbjct: 337 IRDGLATWDNWKH-----VNCDKLTTIIE--SSLNVL-EPAEYRKMFDRLSVFPPSAHIP 388
Query: 475 PDAIKEESGEGKPNILEVILQE-------GKVPNNNAI----IQCRICSKTFTRKDSLRK 523
+ + + + V++ + K P + I I + K ++
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK---LENEYAL 445
Query: 524 HMRRFHIINDTNVKKEFTEGQINRNMLD 551
H I++ N+ K F + LD
Sbjct: 446 HRS---IVDHYNIPKTFDSDDLIPPYLD 470
Score = 45.6 bits (107), Expect = 8e-05
Identities = 54/416 (12%), Positives = 119/416 (28%), Gaps = 107/416 (25%)
Query: 1 MQMIISEHIKSHEYVENHMCELCYKVFESRENLMRHLK---------IHDDKESKR---- 47
+Q ++ + + +H + ++ + L R LK + + ++ +
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 48 --FKCEQCDK-----RFSS-----NAELNKHSSAIHQRLKLHEC---DLCGKNFSQR-NN 91
C K RF +A H S H + L L K R +
Sbjct: 262 FNLSC----KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD 317
Query: 92 LKRQA----------------NGSNVNNRFSSNAELNKHSSAIHQRLKLHECDLCGKNFS 135
L R+ +G + + + +K ++ I L + E K F
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNW-KHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 136 Q----RNN-------LKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHNGPKYTC 184
+ + L +V ++D M + L + + I +
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS---IYL 433
Query: 185 EICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHIEN---NHLDYSC 241
E+ K E +H+ + + + F + +++ +H+ +
Sbjct: 434 ELKVK---LENEYALHRSIVD----HYNIPKTFDSDDLIPP-----YLDQYFYSHIGHHL 481
Query: 242 LECKAVGEEISFDTKKNLLLHL-----KTKHKNVISNVYLTCLICFKTFLTEVDLGKHMK 296
+ F + + L K +H + N + L T L + K
Sbjct: 482 KNIEHPERMTLF---RMVFLDFRFLEQKIRHDSTAWNASGSIL---NTLQ---QLKFY-K 531
Query: 297 MHMDDNQIQCRFCNKYFSRNYNLKQHMKTCTKNVSNGILNC-------DDNEGEYN 345
++ DN KY + + +N+ ++E +
Sbjct: 532 PYICDN------DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
Score = 37.5 bits (86), Expect = 0.019
Identities = 34/207 (16%), Positives = 71/207 (34%), Gaps = 39/207 (18%)
Query: 668 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGA--RANAAFI-DRIRCELCDKSFTR 724
D KD++ +R+F T Q +++ + R N F+ I+ E S
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQ-EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 725 KDSLKKHNRIFHGGADPKVMDEQMARGSA-DFLEVVLNEDGEGEPVSI------------ 771
+ +++ +R+++ ++R L L E + V I
Sbjct: 110 RMYIEQRDRLYNDN--QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA 167
Query: 772 -----TNEILCKICNRTF---TRNYN-----LKKHMKTVHKIDDN--EPYFAYENTEYDE 816
+ ++ CK+ + F +N N L+ K +++ID N N +
Sbjct: 168 LDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 817 EEGEMEGEEF---GSLSNSMLEVIIRD 840
+ E N +L ++ +
Sbjct: 228 HSIQAELRRLLKSKPYENCLL--VLLN 252
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic
acid binding, KIAA1227 protein, structural genomics;
NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 44.9 bits (105), Expect = 5e-06
Identities = 19/88 (21%), Positives = 27/88 (30%), Gaps = 6/88 (6%)
Query: 7 EHIKSHEYVENHMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKH 66
E E + C LC S H ++ + C C RF S +H
Sbjct: 6 SGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRN----AAVCPYCSLRFFSPELKQEH 61
Query: 67 SSAIHQRLKLHECDLCGKNFSQRNNLKR 94
S K C C + F ++ R
Sbjct: 62 ES--KCEYKKLTCLECMRTFKSSFSIWR 87
Score = 44.5 bits (104), Expect = 8e-06
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 5/89 (5%)
Query: 123 KLHECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHNGPKY 182
++++C LC S H C CS + + H K
Sbjct: 15 EVYQCRLCNAKLSSLLEQGSHERLCRN----AAVCPYCSLRFFSPELKQEHESKCEYKKL 70
Query: 183 TCEICAKEFTRVYELNIH-KKLHEDESVA 210
TC C + F + + H ++H ++A
Sbjct: 71 TCLECMRTFKSSFSIWRHQVEVHNQNNMA 99
Score = 44.5 bits (104), Expect = 9e-06
Identities = 23/111 (20%), Positives = 34/111 (30%), Gaps = 24/111 (21%)
Query: 43 KESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRQANGSNVN 102
+ + ++C C+ + SS E H C C
Sbjct: 12 ENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAV---CPYCSL------------------ 50
Query: 103 NRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRHLEEVHRTDGM 153
RF S +H S K C C + F ++ RH EVH + M
Sbjct: 51 -RFFSPELKQEHES--KCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNM 98
Score = 44.1 bits (103), Expect = 1e-05
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 13/94 (13%)
Query: 176 IHNGPKYTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHIENN 235
+ N Y C +C + + + E H++L + +V C +C F + H E+
Sbjct: 11 VENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAV-----CPYCSLRFFSPELKQEH-ESK 64
Query: 236 HLD--YSCLECKAVGEEISFDTKKNLLLHLKTKH 267
+CLEC +F + ++ H H
Sbjct: 65 CEYKKLTCLECMR-----TFKSSFSIWRHQVEVH 93
Score = 34.5 bits (78), Expect = 0.024
Identities = 15/103 (14%), Positives = 30/103 (29%), Gaps = 6/103 (5%)
Query: 441 TQANKIIQCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGKVP 500
+ ++ QC +C + H ++ + QE +
Sbjct: 11 VENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFS------PELKQEHESK 64
Query: 501 NNNAIIQCRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEG 543
+ C C +TF S+ +H H N+ + G
Sbjct: 65 CEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTSGPSSG 107
Score = 34.5 bits (78), Expect = 0.029
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 264 KTKHKNVISNVYLTCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHM 323
+ V + C +C + ++ G H ++ N C +C+ F ++H
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHE 62
Query: 324 KTCT 327
C
Sbjct: 63 SKCE 66
Score = 34.1 bits (77), Expect = 0.038
Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 12/92 (13%)
Query: 234 NNHLDYSCLECKAVGEEISFDTKKNLLLHLKTKHKNVISNVYLTCLICFKTFLTEVDLGK 293
N Y C C A + H + + C C F + +
Sbjct: 12 ENKEVYQCRLCNA-----KLSSLLEQGSHERLCRNAAV------CPYCSLRFFSPELKQE 60
Query: 294 HMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKT 325
H + ++ C C + F ++++ +H
Sbjct: 61 HES-KCEYKKLTCLECMRTFKSSFSIWRHQVE 91
Score = 33.0 bits (74), Expect = 0.10
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 9/91 (9%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNE 774
C LC+ + H R+ A S F L ++ E + +
Sbjct: 19 CRLCNAKLSSLLEQGSHERLCRNAA-------VCPYCSLRFFSPELKQEHESK--CEYKK 69
Query: 775 ILCKICNRTFTRNYNLKKHMKTVHKIDDNEP 805
+ C C RTF ++++ +H VH ++ P
Sbjct: 70 LTCLECMRTFKSSFSIWRHQVEVHNQNNMAP 100
Score = 32.6 bits (73), Expect = 0.14
Identities = 19/108 (17%), Positives = 34/108 (31%), Gaps = 8/108 (7%)
Query: 494 LQEGKVPNNNAIIQCRICSKTFTRKDSLRKHMRRFHIINDTNV-KKEFTEGQINRNMLDV 552
N + QCR+C+ + H R F ++ +
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQ----- 59
Query: 553 ILKESGHEIKSRIPCELCYKTFTRKDSLRKHMKIFHTRRNPSANSGNS 600
+ ++ C C +TF S+ +H H + N + SG S
Sbjct: 60 --EHESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTSGPS 105
Score = 29.1 bits (64), Expect = 1.8
Identities = 13/91 (14%), Positives = 28/91 (30%), Gaps = 3/91 (3%)
Query: 650 NRTSVGPVAPIDRIPCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNV---IEVALGARAN 706
+ PV + C LC+ + H R+ + ++ +
Sbjct: 4 GSSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHES 63
Query: 707 AAFIDRIRCELCDKSFTRKDSLKKHNRIFHG 737
++ C C ++F S+ +H H
Sbjct: 64 KCEYKKLTCLECMRTFKSSFSIWRHQVEVHN 94
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 41.6 bits (98), Expect = 3e-05
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 160 CSKVLATSHSLKRHLLIHNGPK-YTC--EICAKEFTRVYELNIHKKLH 204
C K S LK H H G K ++C + C + F R EL+ H++ H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 40.4 bits (95), Expect = 9e-05
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 8 HIKSHEYVENHMC--ELCYKVFESRENLMRHLKIHDDKESKRFKC--EQCDKRFSSNAEL 63
+ +H+C C K + +L H + H + K F C + C++RF+ + EL
Sbjct: 8 PQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGE--KPFSCSWKGCERRFARSDEL 65
Query: 64 NKH 66
++H
Sbjct: 66 SRH 68
Score = 40.1 bits (94), Expect = 1e-04
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 10/71 (14%)
Query: 113 KHSSAIHQRLKLHECDL--CGKNFSQRNNLKRHLEEVHRTD-GMK-FECYV--CSKVLAT 166
R++ H C CGK + + ++LK H RT G K F C C + A
Sbjct: 6 SGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHT----RTHTGEKPFSCSWKGCERRFAR 61
Query: 167 SHSLKRHLLIH 177
S L RH H
Sbjct: 62 SDELSRHRRTH 72
Score = 38.9 bits (91), Expect = 4e-04
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 20/67 (29%)
Query: 668 CDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDS 727
C KT+ + LK H R HT +P + + C++ F R D
Sbjct: 25 CGKTYFKSSHLKAHTRT-HTGEKPFSCSW-------------------KGCERRFARSDE 64
Query: 728 LKKHNRI 734
L +H R
Sbjct: 65 LSRHRRT 71
Score = 35.4 bits (82), Expect = 0.006
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 281 CFKTFLTEVDLGKHMKMHMDDNQIQCRF--CNKYFSRNYNLKQHMKT 325
C KT+ L H + H + C + C + F+R+ L +H +T
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Score = 34.3 bits (79), Expect = 0.012
Identities = 17/88 (19%), Positives = 27/88 (30%), Gaps = 32/88 (36%)
Query: 65 KHSSAIHQRLKLHECDL--CGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRL 122
R++ H C CGK + + ++LK H R
Sbjct: 6 SGPQIDSSRIRSHICSHPGCGKTYFKSSHLKA------------------------HTRT 41
Query: 123 ----KLHECDL--CGKNFSQRNNLKRHL 144
K C C + F++ + L RH
Sbjct: 42 HTGEKPFSCSWKGCERRFARSDELSRHR 69
Score = 34.3 bits (79), Expect = 0.016
Identities = 24/99 (24%), Positives = 31/99 (31%), Gaps = 35/99 (35%)
Query: 433 HGSGSTNNTQANKIIQCHI--CLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNIL 490
SG ++ + C C KT+ K LK H + HT GE KP
Sbjct: 4 GSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRT-HT-----------GE-KPF-- 48
Query: 491 EVILQEGKVPNNNAIIQCRI--CSKTFTRKDSLRKHMRR 527
C C + F R D L +H R
Sbjct: 49 ----------------SCSWKGCERRFARSDELSRHRRT 71
Score = 33.5 bits (77), Expect = 0.027
Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 8/70 (11%)
Query: 167 SHSLKRHLLIHNGPK-YTCEI--CAKEFTRVYELNIHKKLHEDESVANQLKCEF--CGKV 221
S + + + + C C K + + L H + H E C + C +
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGE---KPFSCSWKGCERR 58
Query: 222 FLKKSNLKAH 231
F + L H
Sbjct: 59 FARSDELSRH 68
Score = 29.3 bits (66), Expect = 0.98
Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
Query: 214 KCEF--CGKVFLKKSNLKAHI 232
C CGK + K S+LKAH
Sbjct: 19 ICSHPGCGKTYFKSSHLKAHT 39
Score = 27.4 bits (61), Expect = 4.0
Identities = 17/81 (20%), Positives = 23/81 (28%), Gaps = 36/81 (44%)
Query: 718 CDKSFTRKDSLKKHNRIFHGGADPKVMDEQMARGSADFLEVVLNEDGEGEPVSITNEILC 777
C K++ + LK H R H G P C
Sbjct: 25 CGKTYFKSSHLKAHTRT-HTGEKPFS---------------------------------C 50
Query: 778 KI--CNRTFTRNYNLKKHMKT 796
C R F R+ L +H +T
Sbjct: 51 SWKGCERRFARSDELSRHRRT 71
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 40.9 bits (95), Expect = 5e-05
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 47 RFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRQ 95
++ CE+C R + L KH H ++ + C C +F + NL +
Sbjct: 1 KYICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 39.3 bits (91), Expect = 2e-04
Identities = 14/55 (25%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 154 KFECYVCSKVLATSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDE 207
K+ C C LK+H+ H + Y C C F L H K
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS 55
Score = 37.0 bits (85), Expect = 0.001
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 181 KYTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHIENN 235
KY CE C + L H + H D C +C F K NL H+++
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDV---RPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 36.6 bits (84), Expect = 0.001
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 18 HMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKH 66
++CE C + L +H++ H D + + C C+ F + L KH
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDV--RPYHCTYCNFSFKTKGNLTKH 48
Score = 36.2 bits (83), Expect = 0.002
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 125 HECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLATSHSLKRHLLIHNGPK 181
+ C+ CG + + LK+H+ TD + C C+ T +L +H+ K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRT--HTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 35.5 bits (81), Expect = 0.004
Identities = 16/51 (31%), Positives = 21/51 (41%)
Query: 277 TCLICFKTFLTEVDLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
C C L KH++ H D C +CN F NL +HMK+
Sbjct: 3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKA 53
Score = 30.8 bits (69), Expect = 0.19
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 20/68 (29%)
Query: 77 HECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQ 136
+ C+ CG + + LK+ H ++ + C C +F
Sbjct: 2 YICEECGIRXKKPSMLKKHIR--------------------THTDVRPYHCTYCNFSFKT 41
Query: 137 RNNLKRHL 144
+ NL +H+
Sbjct: 42 KGNLTKHM 49
Score = 30.1 bits (67), Expect = 0.30
Identities = 19/73 (26%), Positives = 24/73 (32%), Gaps = 22/73 (30%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C C + LKKHIR HT +P C C+ SF
Sbjct: 4 CEECGIRXKKPSMLKKHIRT-HTDVRP---------------------YHCTYCNFSFKT 41
Query: 725 KDSLKKHNRIFHG 737
K +L KH +
Sbjct: 42 KGNLTKHMKSKAH 54
Score = 27.4 bits (60), Expect = 2.6
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 5 ISEHIKSHEYVENHMCELCYKVFESRENLMRHLKIH 40
+ +HI++H V + C C F+++ NL +H+K
Sbjct: 17 LKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 40.4 bits (94), Expect = 1e-04
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 11/68 (16%)
Query: 165 ATSHSLKRHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFL 223
+S S + IH G + C C F R L+ K CE C K
Sbjct: 1 GSSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRKTP----------MCEKCRKDSC 50
Query: 224 KKSNLKAH 231
+++ L
Sbjct: 51 QEAALNKD 58
Score = 39.3 bits (91), Expect = 2e-04
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 10/64 (15%)
Query: 29 SRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQ 88
S + + KIH + KC +C F + L++ + C+ C K+ Q
Sbjct: 2 SSGSSGKRQKIHLG--DRSQKCSKCGIIFIRRSTLSRRKT--------PMCEKCRKDSCQ 51
Query: 89 RNNL 92
L
Sbjct: 52 EAAL 55
Score = 39.3 bits (91), Expect = 3e-04
Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 10/75 (13%)
Query: 107 SNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKVLAT 166
S+ K IH + +C CG F +R+ L R C C K
Sbjct: 2 SSGSSGKRQK-IHLGDRSQKCSKCGIIFIRRSTLSRR---------KTPMCEKCRKDSCQ 51
Query: 167 SHSLKRHLLIHNGPK 181
+L + +G K
Sbjct: 52 EAALNKDEGNESGKK 66
Score = 36.6 bits (84), Expect = 0.003
Identities = 17/62 (27%), Positives = 21/62 (33%), Gaps = 9/62 (14%)
Query: 5 ISEHIKSHEYVENHMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELN 64
+ K H + C C +F R L R K CE+C K A LN
Sbjct: 6 SGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRR---------KTPMCEKCRKDSCQEAALN 56
Query: 65 KH 66
K
Sbjct: 57 KD 58
Score = 36.2 bits (83), Expect = 0.003
Identities = 18/90 (20%), Positives = 27/90 (30%), Gaps = 29/90 (32%)
Query: 59 SNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAI 118
S+ K IH + +C CG F +R+ L R+
Sbjct: 2 SSGSSGKRQK-IHLGDRSQKCSKCGIIFIRRSTLSRR----------------------- 37
Query: 119 HQRLKLHECDLCGKNFSQRNNLKRHLEEVH 148
K C+ C K+ Q L + E
Sbjct: 38 ----KTPMCEKCRKDSCQEAALNKD-EGNE 62
Score = 31.9 bits (72), Expect = 0.097
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 677 SLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTRKDSLKKHNRIFH 736
S K +I H ++ Q + + R+ + CE C K ++ +L K
Sbjct: 5 SSGKRQKI-HLGDRSQKCSKCGIIFIRRSTLSRRKTPMCEKCRKDSCQEAALNKDEGNES 63
Query: 737 G 737
G
Sbjct: 64 G 64
Score = 26.9 bits (59), Expect = 6.7
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 8/49 (16%)
Query: 196 ELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHIENNHLDYSCLEC 244
+K+H + KC CG +F+++S L C +C
Sbjct: 5 SSGKRQKIHLGD---RSQKCSKCGIIFIRRSTLS-----RRKTPMCEKC 45
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 3e-04
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K ++CD+CGK FSQ ++L+ H
Sbjct: 1 GSSGSSGMGEKCYKCDVCGKEFSQSSHLQTH 31
Score = 34.4 bits (80), Expect = 0.007
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 4/30 (13%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNLKR 94
K ++CD+CGK FSQ ++L+
Sbjct: 1 GSSGSSGMGEKCYKCDVCGKEFSQSSHLQT 30
Score = 31.3 bits (72), Expect = 0.087
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C++C KEF++ L H+++H
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 28.6 bits (65), Expect = 0.64
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 46 KRFKCEQCDKRFSSNAELNKH 66
K +KC+ C K FS ++ L H
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTH 31
Score = 28.3 bits (64), Expect = 0.96
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
KC+ CGK F + S+L+ H
Sbjct: 14 KCDVCGKEFSQSSHLQTH 31
Score = 28.3 bits (64), Expect = 1.00
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 714 RCELCDKSFTRKDSLKKHNRIFHGGADP 741
+C++C K F++ L+ H R+ H G P
Sbjct: 14 KCDVCGKEFSQSSHLQTHQRV-HTGEKP 40
Score = 27.1 bits (61), Expect = 2.6
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQP 691
C +C K F++ L+ H R+ HT +P
Sbjct: 15 CDVCGKEFSQSSHLQTHQRV-HTGEKP 40
Score = 26.0 bits (58), Expect = 7.4
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQH 322
G M + +C C K FS++ +L+ H
Sbjct: 1 GSSGSSGMGEKCYKCDVCGKEFSQSSHLQTH 31
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 37.5 bits (88), Expect = 5e-04
Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K EC CGK+F + NL H
Sbjct: 1 GSSGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
Score = 34.1 bits (79), Expect = 0.007
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 4/28 (14%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNL 92
K EC CGK+F + NL
Sbjct: 1 GSSGSSGTGQKPFECTHCGKSFRAKGNL 28
Score = 29.4 bits (67), Expect = 0.39
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQP 691
CT C K+F K +L H RI HT +
Sbjct: 15 CTHCGKSFRAKGNLVTHQRI-HTGEKS 40
Score = 29.0 bits (66), Expect = 0.59
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K + C C K F L H+++H
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIH 35
Score = 28.7 bits (65), Expect = 0.75
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C KSF K +L H RI H G
Sbjct: 15 CTHCGKSFRAKGNLVTHQRI-HTGEKS 40
Score = 27.5 bits (62), Expect = 1.8
Identities = 11/44 (25%), Positives = 14/44 (31%), Gaps = 3/44 (6%)
Query: 36 HLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
+ K F+C C K F + L H IH K
Sbjct: 3 SGSSGTGQ--KPFECTHCGKSFRAKGNLVTHQR-IHTGEKSGPS 43
Score = 27.5 bits (62), Expect = 2.0
Identities = 9/33 (27%), Positives = 11/33 (33%), Gaps = 3/33 (9%)
Query: 199 IHKKLHEDESVANQLKCEFCGKVFLKKSNLKAH 231
+ +C CGK F K NL H
Sbjct: 2 SSGSSGTGQ---KPFECTHCGKSFRAKGNLVTH 31
Score = 26.3 bits (59), Expect = 4.7
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C C K+F K +L H +I HT
Sbjct: 15 CTHCGKSFRAKGNLVTHQRI-HT 36
Score = 26.0 bits (58), Expect = 6.5
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
+C C K+F K +L H R
Sbjct: 14 ECTHCGKSFRAKGNLVTHQR 33
Score = 25.6 bits (57), Expect = 9.5
Identities = 9/36 (25%), Positives = 11/36 (30%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
G +C C K F NL H + T
Sbjct: 1 GSSGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHT 36
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 37.5 bits (88), Expect = 6e-04
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K +EC+ C K F+ ++NL H
Sbjct: 1 GSSGSSGTGEKPYECNECQKAFNTKSNLMVH 31
Score = 34.4 bits (80), Expect = 0.006
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNL 92
K +EC+ C K F+ ++NL
Sbjct: 1 GSSGSSGTGEKPYECNECQKAFNTKSNL 28
Score = 29.8 bits (68), Expect = 0.29
Identities = 10/33 (30%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C C K F L +H++ H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTH 35
Score = 28.2 bits (64), Expect = 0.93
Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K F K +L H R HT
Sbjct: 15 CNECQKAFNTKSNLMVHQRT-HT 36
Score = 27.8 bits (63), Expect = 1.4
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K+F K +L H R H G
Sbjct: 15 CNECQKAFNTKSNLMVHQRT-HTGESG 40
Score = 27.8 bits (63), Expect = 1.5
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
+C C K F KSNL H
Sbjct: 14 ECNECQKAFNTKSNLMVH 31
Score = 26.7 bits (60), Expect = 3.4
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C C K F K +L H + HT
Sbjct: 15 CNECQKAFNTKSNLMVHQRT-HT 36
Score = 26.7 bits (60), Expect = 3.9
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 9/38 (23%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQRL----KLHEC 79
K ++C +C K F++ + L +HQR
Sbjct: 11 KPYECNECQKAFNTKSNL-----MVHQRTHTGESGPSS 43
Score = 26.3 bits (59), Expect = 4.8
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 508 CRICSKTFTRKDSLRKHMR 526
C C K F K +L H R
Sbjct: 15 CNECQKAFNTKSNLMVHQR 33
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 6e-04
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K +CD+CGK+F R+ L RH
Sbjct: 1 GSSGSSGTGEKPFKCDICGKSFCGRSRLNRH 31
Score = 33.6 bits (78), Expect = 0.014
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNLKR 94
K +CD+CGK+F R+ L R
Sbjct: 1 GSSGSSGTGEKPFKCDICGKSFCGRSRLNR 30
Score = 32.1 bits (74), Expect = 0.045
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K + C+IC K F LN H +H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 30.2 bits (69), Expect = 0.20
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECD 80
K FKC+ C K F + LN+HS +H K
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSM-VHTAEKPSGPS 44
Score = 29.4 bits (67), Expect = 0.35
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C++C KSF + L +H+ + H P
Sbjct: 15 CDICGKSFCGRSRLNRHSMV-HTAEKP 40
Score = 29.0 bits (66), Expect = 0.53
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
KC+ CGK F +S L H
Sbjct: 14 KCDICGKSFCGRSRLNRH 31
Score = 29.0 bits (66), Expect = 0.60
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C +C K+F + L +H + HT
Sbjct: 15 CDICGKSFCGRSRLNRHSMV-HT 36
Score = 27.1 bits (61), Expect = 2.3
Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C++C K+F + L +H + HT
Sbjct: 15 CDICGKSFCGRSRLNRHSMV-HT 36
Score = 26.7 bits (60), Expect = 4.2
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 508 CRICSKTFTRKDSLRKHMR 526
C IC K+F + L +H
Sbjct: 15 CDICGKSFCGRSRLNRHSM 33
Score = 25.9 bits (58), Expect = 6.4
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 20 CELCYKVFESRENLMRHLKIH 40
C++C K F R L RH +H
Sbjct: 15 CDICGKSFCGRSRLNRHSMVH 35
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 8e-04
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K ++C+ CGK ++ + NL H
Sbjct: 1 GSSGSSGTGEKPYKCEKCGKGYNSKFNLDMH 31
Score = 33.3 bits (77), Expect = 0.015
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNL 92
K ++C+ CGK ++ + NL
Sbjct: 1 GSSGSSGTGEKPYKCEKCGKGYNSKFNL 28
Score = 31.7 bits (73), Expect = 0.062
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y CE C K + + L++H+K+H
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVH 35
Score = 29.4 bits (67), Expect = 0.39
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
KCE CGK + K NL H
Sbjct: 14 KCEKCGKGYNSKFNLDMH 31
Score = 29.0 bits (66), Expect = 0.52
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 714 RCELCDKSFTRKDSLKKHNRIFHGGADP 741
+CE C K + K +L H ++ H G P
Sbjct: 14 KCEKCGKGYNSKFNLDMHQKV-HTGERP 40
Score = 29.0 bits (66), Expect = 0.60
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 7/38 (18%)
Query: 36 HLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQR 73
+ K +KCE+C K ++S L+ +HQ+
Sbjct: 3 SGSSGTGE--KPYKCEKCGKGYNSKFNLD-----MHQK 33
Score = 27.9 bits (63), Expect = 1.2
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K + K +L H ++ HT
Sbjct: 15 CEKCGKGYNSKFNLDMHQKV-HT 36
Score = 26.0 bits (58), Expect = 7.0
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
CE C K + K +L H K+ HT
Sbjct: 15 CEKCGKGYNSKFNLDMHQKV-HT 36
Score = 26.0 bits (58), Expect = 7.4
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
G + +C C K ++ +NL H K T
Sbjct: 1 GSSGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHT 36
Score = 25.6 bits (57), Expect = 8.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 20 CELCYKVFESRENLMRHLKIH 40
CE C K + S+ NL H K+H
Sbjct: 15 CEKCGKGYNSKFNLDMHQKVH 35
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 36.5 bits (85), Expect = 9e-04
Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Query: 507 QCRICSKTFTRKDSLRKHMRRFHII 531
QC C ++F+R D L H +R H++
Sbjct: 13 QCPDCDRSFSRSDHLALHRKR-HML 36
Score = 32.7 bits (75), Expect = 0.021
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 665 CTLCDKTFTRKDSLKKHIR 683
C CD++F+R D L H +
Sbjct: 14 CPDCDRSFSRSDHLALHRK 32
Score = 32.7 bits (75), Expect = 0.023
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 714 RCELCDKSFTRKDSLKKHNR 733
+C CD+SF+R D L H +
Sbjct: 13 QCPDCDRSFSRSDHLALHRK 32
Score = 32.7 bits (75), Expect = 0.024
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 294 HMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKT 325
+ QC C++ FSR+ +L H K
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKR 33
Score = 32.3 bits (74), Expect = 0.031
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 46 KRFKCEQCDKRFSSNAELNKH 66
K F+C CD+ FS + L H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALH 30
Score = 31.5 bits (72), Expect = 0.055
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 777 CKICNRTFTRNYNLKKHMKT 796
C C+R+F+R+ +L H K
Sbjct: 14 CPDCDRSFSRSDHLALHRKR 33
Score = 31.2 bits (71), Expect = 0.072
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K + C C + F+R L +H+K H
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 31.2 bits (71), Expect = 0.084
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 567 CELCYKTFTRKDSLRKHMK 585
C C ++F+R D L H K
Sbjct: 14 CPDCDRSFSRSDHLALHRK 32
Score = 30.8 bits (70), Expect = 0.097
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 448 QCHICLKTFAKKDSLKKHMK 467
QC C ++F++ D L H K
Sbjct: 13 QCPDCDRSFSRSDHLALHRK 32
Score = 26.1 bits (58), Expect = 4.4
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 118 IHQRLKLHECDLCGKNFSQRNNLKRHL 144
+K +C C ++FS+ ++L H
Sbjct: 5 GSTGIKPFQCPDCDRSFSRSDHLALHR 31
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 9e-04
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K +EC +CGK+F++++ L H
Sbjct: 1 GSSGSSGTGEKPYECSICGKSFTKKSQLHVH 31
Score = 34.1 bits (79), Expect = 0.010
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNL 92
K +EC +CGK+F++++ L
Sbjct: 1 GSSGSSGTGEKPYECSICGKSFTKKSQL 28
Score = 32.5 bits (75), Expect = 0.035
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C IC K FT+ +L++H+++H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVHQQIH 35
Score = 29.4 bits (67), Expect = 0.34
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C++C K+FT+K L H +I HT
Sbjct: 15 CSICGKSFTKKSQLHVHQQI-HT 36
Score = 29.4 bits (67), Expect = 0.38
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C +C KSFT+K L H +I H G P
Sbjct: 15 CSICGKSFTKKSQLHVHQQI-HTGEKP 40
Score = 27.5 bits (62), Expect = 2.0
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
+C CGK F KKS L H
Sbjct: 14 ECSICGKSFTKKSQLHVH 31
Score = 27.5 bits (62), Expect = 2.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
+C IC K+FT+K L H +
Sbjct: 14 ECSICGKSFTKKSQLHVHQQ 33
Score = 27.1 bits (61), Expect = 2.5
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 11/49 (22%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRL----KLHEC 79
+ K ++C C K F+ ++L +HQ++ K
Sbjct: 2 SSGSSGTGE--KPYECSICGKSFTKKSQL-----HVHQQIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 2.7
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C +C K+FT+K L H +I HT
Sbjct: 15 CSICGKSFTKKSQLHVHQQI-HT 36
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 36.8 bits (86), Expect = 0.001
Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 119 HQRL----KLHECDLCGKNFSQRNNLKRH 143
K + CD CGK FSQ+ +L H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVH 30
Score = 33.3 bits (77), Expect = 0.016
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Query: 71 HQRL----KLHECDLCGKNFSQRNNL 92
K + CD CGK FSQ+ +L
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSL 27
Score = 31.4 bits (72), Expect = 0.065
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQP 691
C C K F++K SL HIR+ HT + P
Sbjct: 14 CDQCGKAFSQKGSLIVHIRV-HTGSGP 39
Score = 31.0 bits (71), Expect = 0.083
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDE 207
G K Y C+ C K F++ L +H ++H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGS 37
Score = 30.2 bits (69), Expect = 0.16
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 714 RCELCDKSFTRKDSLKKHNRIFHGGADP 741
RC+ C K+F++K SL H R+ H G+ P
Sbjct: 13 RCDQCGKAFSQKGSLIVHIRV-HTGSGP 39
Score = 27.9 bits (63), Expect = 1.2
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 5/28 (17%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQR 73
K ++C+QC K FS L +H R
Sbjct: 10 KPYRCDQCGKAFSQKGSL-----IVHIR 32
Score = 27.9 bits (63), Expect = 1.3
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHTRRNPSA 595
C+ C K F++K SL H+++ HT PS+
Sbjct: 14 CDQCGKAFSQKGSLIVHIRV-HTGSGPSS 41
Score = 27.1 bits (61), Expect = 2.1
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
+C+ CGK F +K +L H
Sbjct: 13 RCDQCGKAFSQKGSLIVH 30
Score = 27.1 bits (61), Expect = 2.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
+C C K F++K SL H+R
Sbjct: 13 RCDQCGKAFSQKGSLIVHIR 32
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 0.001
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K +EC +CGK FS R +L H
Sbjct: 1 GSSGSSGTGEKPYECSVCGKAFSHRQSLSVH 31
Score = 33.6 bits (78), Expect = 0.011
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNL 92
K +EC +CGK FS R +L
Sbjct: 1 GSSGSSGTGEKPYECSVCGKAFSHRQSL 28
Score = 30.6 bits (70), Expect = 0.16
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C +C K F+ L++H+++H
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIH 35
Score = 29.4 bits (67), Expect = 0.38
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C++C K F+ + SL H RI H+
Sbjct: 15 CSVCGKAFSHRQSLSVHQRI-HS 36
Score = 28.2 bits (64), Expect = 1.0
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C +C K+F+ + SL H RI H G P
Sbjct: 15 CSVCGKAFSHRQSLSVHQRI-HSGKKP 40
Score = 26.7 bits (60), Expect = 3.8
Identities = 11/49 (22%), Positives = 17/49 (34%), Gaps = 11/49 (22%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRL----KLHEC 79
+ K ++C C K FS L ++HQR+ K
Sbjct: 2 SSGSSGTGE--KPYECSVCGKAFSHRQSL-----SVHQRIHSGKKPSGP 43
Score = 26.3 bits (59), Expect = 4.4
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C +C K F+ + SL H +I H+
Sbjct: 15 CSVCGKAFSHRQSLSVHQRI-HS 36
Score = 26.3 bits (59), Expect = 5.1
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
+C CGK F + +L H
Sbjct: 14 ECSVCGKAFSHRQSLSVH 31
Score = 26.3 bits (59), Expect = 5.7
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 508 CRICSKTFTRKDSLRKHMR 526
C +C K F+ + SL H R
Sbjct: 15 CSVCGKAFSHRQSLSVHQR 33
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 36.8 bits (86), Expect = 0.001
Identities = 12/36 (33%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRHLEEVH 148
K +EC CGK F Q +L RH H
Sbjct: 1 GSSGSSGTGKKPYECIECGKAFIQNTSLIRHWRYYH 36
Score = 34.1 bits (79), Expect = 0.008
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 36 HLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
K K ++C +C K F N L +H H K
Sbjct: 3 SGSSGTGK--KPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
Score = 31.0 bits (71), Expect = 0.13
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNLKR 94
K +EC CGK F Q +L R
Sbjct: 1 GSSGSSGTGKKPYECIECGKAFIQNTSLIR 30
Score = 29.5 bits (67), Expect = 0.35
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQP 691
C C K F + SL +H R +HT +P
Sbjct: 15 CIECGKAFIQNTSLIRHWRYYHTGEKP 41
Score = 29.5 bits (67), Expect = 0.41
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 507 QCRICSKTFTRKDSLRKHMRRFH 529
+C C K F + SL +H R +H
Sbjct: 14 ECIECGKAFIQNTSLIRHWRYYH 36
Score = 29.5 bits (67), Expect = 0.43
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K+F + SL +H R +H G P
Sbjct: 15 CIECGKAFIQNTSLIRHWRYYHTGEKP 41
Score = 27.5 bits (62), Expect = 1.7
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C C K F + SL +H + +HT
Sbjct: 15 CIECGKAFIQNTSLIRHWRYYHT 37
Score = 26.0 bits (58), Expect = 7.7
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
+C CGK F++ ++L H
Sbjct: 14 ECIECGKAFIQNTSLIRH 31
Score = 26.0 bits (58), Expect = 7.9
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 448 QCHICLKTFAKKDSLKKHMKVFHT 471
+C C K F + SL +H + +HT
Sbjct: 14 ECIECGKAFIQNTSLIRHWRYYHT 37
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 0.001
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K + C CGK F+ R+NL H
Sbjct: 1 GSSGSSGTGEKPYRCAECGKAFTDRSNLFTH 31
Score = 32.9 bits (76), Expect = 0.026
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNL 92
K + C CGK F+ R+NL
Sbjct: 1 GSSGSSGTGEKPYRCAECGKAFTDRSNL 28
Score = 30.2 bits (69), Expect = 0.20
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C C K FT L H+K+H
Sbjct: 2 SSGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIH 35
Score = 29.4 bits (67), Expect = 0.41
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K+FT + +L H +I H G P
Sbjct: 15 CAECGKAFTDRSNLFTHQKI-HTGEKP 40
Score = 29.0 bits (66), Expect = 0.60
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K FT + +L H +I HT
Sbjct: 15 CAECGKAFTDRSNLFTHQKI-HT 36
Score = 28.6 bits (65), Expect = 0.65
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
+C CGK F +SNL H
Sbjct: 14 RCAECGKAFTDRSNLFTH 31
Score = 28.2 bits (64), Expect = 1.0
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKH 66
E K ++C +C K F+ + L H
Sbjct: 2 SSGSSGT-GE-KPYRCAECGKAFTDRSNLFTH 31
Score = 28.2 bits (64), Expect = 1.0
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHTRRNPS 594
C C K FT + +L H KI HT PS
Sbjct: 15 CAECGKAFTDRSNLFTHQKI-HTGEKPS 41
Score = 26.7 bits (60), Expect = 4.1
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
+C C K FT + +L H +
Sbjct: 14 RCAECGKAFTDRSNLFTHQK 33
Score = 26.3 bits (59), Expect = 5.2
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 18 HMCELCYKVFESRENLMRHLKIH 40
+ C C K F R NL H KIH
Sbjct: 13 YRCAECGKAFTDRSNLFTHQKIH 35
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 36.3 bits (85), Expect = 0.002
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K +C CGK FS+R+ L H
Sbjct: 1 GSSGSSGTGEKPFKCVECGKGFSRRSALNVH 31
Score = 32.5 bits (75), Expect = 0.028
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNL 92
K +C CGK FS+R+ L
Sbjct: 1 GSSGSSGTGEKPFKCVECGKGFSRRSAL 28
Score = 31.0 bits (71), Expect = 0.12
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K + C C K F+R LN+H KLH
Sbjct: 2 SSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 29.8 bits (68), Expect = 0.26
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
K FKC +C K FS + LN H +H K
Sbjct: 11 KPFKCVECGKGFSRRSALNVH-HKLHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.32
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K F+R+ +L H+++ H G P
Sbjct: 15 CVECGKGFSRRSALNVHHKL-HTGEKP 40
Score = 29.8 bits (68), Expect = 0.33
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K F+R+ +L H ++ HT
Sbjct: 15 CVECGKGFSRRSALNVHHKL-HT 36
Score = 27.9 bits (63), Expect = 1.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
KC CGK F ++S L H
Sbjct: 14 KCVECGKGFSRRSALNVH 31
Score = 27.5 bits (62), Expect = 2.1
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C C K F+R+ +L H K+ HT
Sbjct: 15 CVECGKGFSRRSALNVHHKL-HT 36
Score = 26.3 bits (59), Expect = 5.3
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
+C C K F+R+ +L H +
Sbjct: 14 KCVECGKGFSRRSALNVHHK 33
Score = 25.6 bits (57), Expect = 8.5
Identities = 11/36 (30%), Positives = 13/36 (36%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
G + +C C K FSR L H K T
Sbjct: 1 GSSGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHT 36
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.9 bits (84), Expect = 0.002
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K +ECD+C K FS +L +H
Sbjct: 1 GSSGSSGTGEKPYECDVCRKAFSHHASLTQH 31
Score = 32.5 bits (75), Expect = 0.036
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNL 92
K +ECD+C K FS +L
Sbjct: 1 GSSGSSGTGEKPYECDVCRKAFSHHASL 28
Score = 29.0 bits (66), Expect = 0.52
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C++C K F+ L H+++H
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVH 35
Score = 28.2 bits (64), Expect = 0.94
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C +C K F+ SL +H R+ H+
Sbjct: 15 CDVCRKAFSHHASLTQHQRV-HS 36
Score = 27.9 bits (63), Expect = 1.4
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 36 HLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
+ K ++C+ C K FS +A L +H +H K
Sbjct: 3 SGSSGTGE--KPYECDVCRKAFSHHASLTQHQR-VHSGEKPSGP 43
Score = 27.9 bits (63), Expect = 1.5
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C++C K+F+ SL +H R+ H G P
Sbjct: 15 CDVCRKAFSHHASLTQHQRV-HSGEKP 40
Score = 26.3 bits (59), Expect = 5.3
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
+C+ C K F ++L H
Sbjct: 14 ECDVCRKAFSHHASLTQH 31
Score = 25.5 bits (57), Expect = 9.0
Identities = 8/23 (34%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C++C K F+ SL +H ++ H+
Sbjct: 15 CDVCRKAFSHHASLTQHQRV-HS 36
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 41.0 bits (95), Expect = 0.002
Identities = 17/166 (10%), Positives = 43/166 (25%), Gaps = 22/166 (13%)
Query: 592 NPSANSGNSGTSAPPAVKLEQNGGEKVENSTSVENSTSVENSTSVENSANVENTSSVDNR 651
+ N+ + K E + + + + ++ V S + N+AN + S +
Sbjct: 82 DKKGNTRGDLVNEHSEAKDEADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDN 141
Query: 652 TSVGPVAPIDRIPCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFID 711
P+ ++ + + + Q
Sbjct: 142 EGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQ------------------- 182
Query: 712 RIRCELCDKSFTRKDSLKKHNRIFHGGADPKVMDEQMARGSADFLE 757
C +C L H + + ++ R +F+
Sbjct: 183 ---CHVCSAVLFSPLDLDAHVASHGLHGNMTLTSSEIQRHITEFIS 225
Score = 37.1 bits (85), Expect = 0.031
Identities = 26/233 (11%), Positives = 61/233 (26%), Gaps = 19/233 (8%)
Query: 589 TRRNPSANSGNSGTSAPPAVKLEQNGGEKVENSTSVENSTS-VENSTSVENSANVENTSS 647
R+ +SG S + +K N + N + +
Sbjct: 5 PRKTKGKSSGKGNDSTERSDDGSSQLRDKQNNKAGPATTEPGTSNREQYRARPGIASVQR 64
Query: 648 VDNRTSVGPVAPIDRIPCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTN-VIEVALGARAN 706
+ + P +K + + + H++ + + + A +
Sbjct: 65 ATESAELPMKNNDEGTP--------DKKGNTRGDLVNEHSEAKDEADEATQKQAKDTDKS 116
Query: 707 AAFIDRIRCELCDKSFTRKDSLKKHNRIFHGGADPKV--MDEQMARGSADFLEVVLNEDG 764
A + + L + + + G + SA + G
Sbjct: 117 KAQVTYSDTG-----INNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARV-G 170
Query: 765 EGEPVSITNEILCKICNRTFTRNYNLKKHMKTVHKIDDNEPYFAYENTEYDEE 817
S + C +C+ +L H+ + H + N + E + E
Sbjct: 171 LPPTASSGHGYQCHVCSAVLFSPLDLDAHVAS-HGLHGNMTLTSSEIQRHITE 222
Score = 34.8 bits (79), Expect = 0.15
Identities = 6/34 (17%), Positives = 10/34 (29%), Gaps = 1/34 (2%)
Query: 119 HQRLKLHECDLCGKNFSQRNNLKRHLEEVHRTDG 152
++C +C +L H H G
Sbjct: 175 ASSGHGYQCHVCSAVLFSPLDLDAH-VASHGLHG 207
Score = 34.1 bits (77), Expect = 0.26
Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 507 QCRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESGHEIKSRIP 566
QC +CS L H+ + + T +I R++ + I H I
Sbjct: 182 QCHVCSAVLFSPLDLDAHVASHGLHGNMT----LTSSEIQRHITEFISSWQNHPIVQVSA 237
Score = 33.3 bits (75), Expect = 0.48
Identities = 10/77 (12%), Positives = 22/77 (28%), Gaps = 2/77 (2%)
Query: 42 DKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKR-QANGSN 100
K E S + ++C +C +L A+
Sbjct: 147 QKPMSTRIAEATSAIVSKHPARVGLPPT-ASSGHGYQCHVCSAVLFSPLDLDAHVASHGL 205
Query: 101 VNNRFSSNAELNKHSSA 117
N +++E+ +H +
Sbjct: 206 HGNMTLTSSEIQRHITE 222
Score = 32.9 bits (74), Expect = 0.57
Identities = 7/32 (21%), Positives = 12/32 (37%)
Query: 17 NHMCELCYKVFESRENLMRHLKIHDDKESKRF 48
+ C +C V S +L H+ H +
Sbjct: 180 GYQCHVCSAVLFSPLDLDAHVASHGLHGNMTL 211
Score = 32.5 bits (73), Expect = 0.77
Identities = 15/91 (16%), Positives = 30/91 (32%), Gaps = 2/91 (2%)
Query: 87 SQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRHLEE 146
+ + G N N S + ++ + + + + S+
Sbjct: 115 KSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPT 174
Query: 147 VHRTDGMKFECYVCSKVLATSHSLKRHLLIH 177
G ++C+VCS VL + L H+ H
Sbjct: 175 ASS--GHGYQCHVCSAVLFSPLDLDAHVASH 203
Score = 32.1 bits (72), Expect = 1.1
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 177 HNGPKYTCEICAKEFTRVYELNIHKKLHEDESVA 210
+G Y C +C+ +L+ H H
Sbjct: 176 SSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNM 209
Score = 31.4 bits (70), Expect = 1.6
Identities = 14/115 (12%), Positives = 32/115 (27%), Gaps = 15/115 (13%)
Query: 372 KMELKEENEENEDRENQSEEENYTPVPEVSIKRETDPLSVEDIISAGEVS----ITPIPQ 427
+ E ++ D Q + ++ +T + ++ +G V P
Sbjct: 91 LVNEHSEAKDEADEATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPM 150
Query: 428 SNTNNHGSGSTNNTQANKII-----------QCHICLKTFAKKDSLKKHMKVFHT 471
S + + + ++ QCH+C L H+
Sbjct: 151 STRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGL 205
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 0.002
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K +EC+ CGK FS R++L H
Sbjct: 1 GSSGSSGTGEKPYECNQCGKAFSVRSSLTTH 31
Score = 32.1 bits (74), Expect = 0.036
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNL 92
K +EC+ CGK FS R++L
Sbjct: 1 GSSGSSGTGEKPYECNQCGKAFSVRSSL 28
Score = 29.8 bits (68), Expect = 0.28
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C C K F+ L H+ +H
Sbjct: 2 SSGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIH 35
Score = 28.7 bits (65), Expect = 0.70
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K F+ + SL H I HT
Sbjct: 15 CNQCGKAFSVRSSLTTHQAI-HT 36
Score = 28.7 bits (65), Expect = 0.82
Identities = 13/45 (28%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
+ K ++C QC K FS + L H AIH K
Sbjct: 2 SSGSSGTGE--KPYECNQCGKAFSVRSSLTTH-QAIHTGKKPSGP 43
Score = 27.9 bits (63), Expect = 1.3
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K+F+ + SL H I H G P
Sbjct: 15 CNQCGKAFSVRSSLTTHQAI-HTGKKP 40
Score = 26.7 bits (60), Expect = 3.6
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C C K F+ + SL H I HT
Sbjct: 15 CNQCGKAFSVRSSLTTHQAI-HT 36
Score = 26.3 bits (59), Expect = 4.5
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
+C CGK F +S+L H
Sbjct: 14 ECNQCGKAFSVRSSLTTH 31
Score = 26.0 bits (58), Expect = 7.5
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
+C C K F+ + SL H
Sbjct: 14 ECNQCGKAFSVRSSLTTHQA 33
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 0.002
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K +EC +C K F+Q+ +L +H
Sbjct: 1 GSSGSSGTGEKPYECKVCSKAFTQKAHLAQH 31
Score = 32.1 bits (74), Expect = 0.041
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNL 92
K +EC +C K F+Q+ +L
Sbjct: 1 GSSGSSGTGEKPYECKVCSKAFTQKAHL 28
Score = 30.6 bits (70), Expect = 0.15
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C++C+K FT+ L H+K H
Sbjct: 2 SSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 29.4 bits (67), Expect = 0.42
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
+ K ++C+ C K F+ A L +H H K
Sbjct: 2 SSGSSGTGE--KPYECKVCSKAFTQKAHLAQHQK-THTGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.99
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C +C K FT+K L +H + HT
Sbjct: 15 CKVCSKAFTQKAHLAQHQKT-HT 36
Score = 27.5 bits (62), Expect = 2.1
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C++C K+FT+K L +H + H G P
Sbjct: 15 CKVCSKAFTQKAHLAQHQKT-HTGEKP 40
Score = 26.3 bits (59), Expect = 5.6
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
+C+ C K F +K++L H
Sbjct: 14 ECKVCSKAFTQKAHLAQH 31
Score = 26.0 bits (58), Expect = 6.1
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C++C K FT+K L +H K HT
Sbjct: 15 CKVCSKAFTQKAHLAQHQKT-HT 36
Score = 26.0 bits (58), Expect = 7.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
+C++CSK FT+K L +H +
Sbjct: 14 ECKVCSKAFTQKAHLAQHQK 33
Score = 26.0 bits (58), Expect = 7.5
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
G + +C+ C+K F++ +L QH KT T
Sbjct: 1 GSSGSSGTGEKPYECKVCSKAFTQKAHLAQHQKTHT 36
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 36.1 bits (83), Expect = 0.002
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 181 KYTCEICAKEFTRVYELNIHKKLHEDE 207
+ CEIC K F VY LN HK H E
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGE 38
Score = 35.3 bits (81), Expect = 0.004
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 17 NHMCELCYKVFESRENLMRHLKIHDDKESKRFKCEQC 53
CE+C K+F +L RH H + K +
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGE--KPYSSGPS 46
Score = 34.5 bits (79), Expect = 0.007
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 123 KLHECDLCGKNFSQRNNLKRH 143
K C++CGK F +L RH
Sbjct: 11 KQVACEICGKIFRDVYHLNRH 31
Score = 33.4 bits (76), Expect = 0.015
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 154 KFECYVCSKVLATSHSLKRHLLIHNGPK-YTCEICA 188
+ C +C K+ + L RH L H+G K Y+ +
Sbjct: 12 QVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSS 47
Score = 30.7 bits (69), Expect = 0.13
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 75 KLHECDLCGKNFSQRNNLKR 94
K C++CGK F +L R
Sbjct: 11 KQVACEICGKIFRDVYHLNR 30
Score = 30.3 bits (68), Expect = 0.22
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQP 691
C +C K F L +H H+ +P
Sbjct: 15 CEICGKIFRDVYHLNRHKLS-HSGEKP 40
Score = 30.3 bits (68), Expect = 0.22
Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 557 SGHEIKSRIPCELCYKTFTRKDSLRKHMKIFHTRRNPSANSGNSG 601
S + ++ CE+C K F L +H H+ P ++ +SG
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHKLS-HSGEKPYSSGPSSG 48
Score = 29.9 bits (67), Expect = 0.31
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 43 KESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLC 82
+ K+ CE C K F LN+H H K +
Sbjct: 8 RTRKQVACEICGKIFRDVYHLNRH-KLSHSGEKPYSSGPS 46
Score = 29.5 bits (66), Expect = 0.39
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 714 RCELCDKSFTRKDSLKKHNRIFHGGADP 741
CE+C K F L +H H G P
Sbjct: 14 ACEICGKIFRDVYHLNRHKLS-HSGEKP 40
Score = 29.1 bits (65), Expect = 0.51
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 777 CKICNRTFTRNYNLKKHMKT 796
C+IC + F Y+L +H +
Sbjct: 15 CEICGKIFRDVYHLNRHKLS 34
Score = 28.0 bits (62), Expect = 1.3
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 214 KCEFCGKVFLKKSNLKAHIENNHLD---YSCLEC 244
CE CGK+F +L H + +H YS
Sbjct: 14 ACEICGKIFRDVYHLNRH-KLSHSGEKPYSSGPS 46
Score = 27.6 bits (61), Expect = 1.8
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 305 QCRFCNKYFSRNYNLKQHMKTCT 327
C C K F Y+L +H + +
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSHS 36
Score = 27.2 bits (60), Expect = 2.5
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
C IC K F L +H
Sbjct: 14 ACEICGKIFRDVYHLNRHKL 33
Score = 26.4 bits (58), Expect = 4.7
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 436 GSTNNTQANKIIQCHICLKTFAKKDSLKKHMKVFHT 471
S ++ + K + C IC K F L +H H+
Sbjct: 2 SSGSSGRTRKQVACEICGKIFRDVYHLNRHKLS-HS 36
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.002
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K + C CGK F+ R+NL +H
Sbjct: 1 GSSGSSGTGEKPYICAECGKAFTIRSNLIKH 31
Score = 32.1 bits (74), Expect = 0.050
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNL 92
K + C CGK F+ R+NL
Sbjct: 1 GSSGSSGTGEKPYICAECGKAFTIRSNL 28
Score = 29.4 bits (67), Expect = 0.37
Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C C K FT L H+K+H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIH 35
Score = 29.0 bits (66), Expect = 0.49
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 36 HLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
+ K + C +C K F+ + L KH IH + K
Sbjct: 3 SGSSGTGE--KPYICAECGKAFTIRSNLIKHQK-IHTKQKPSGP 43
Score = 28.2 bits (64), Expect = 0.96
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K+FT + +L KH +I H P
Sbjct: 15 CAECGKAFTIRSNLIKHQKI-HTKQKP 40
Score = 28.2 bits (64), Expect = 1.0
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K FT + +L KH +I HT
Sbjct: 15 CAECGKAFTIRSNLIKHQKI-HT 36
Score = 27.5 bits (62), Expect = 2.1
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
C CGK F +SNL H
Sbjct: 14 ICAECGKAFTIRSNLIKH 31
Score = 26.7 bits (60), Expect = 4.1
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C C K FT + +L KH KI HT
Sbjct: 15 CAECGKAFTIRSNLIKHQKI-HT 36
Score = 25.6 bits (57), Expect = 9.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 20 CELCYKVFESRENLMRHLKIH 40
C C K F R NL++H KIH
Sbjct: 15 CAECGKAFTIRSNLIKHQKIH 35
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.002
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 118 IHQRL----KLHECDLCGKNFSQRNNLKRH 143
K + C+ CGK FSQ++ L H
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAH 31
Score = 31.7 bits (73), Expect = 0.050
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Query: 70 IHQRL----KLHECDLCGKNFSQRNNL 92
K + C+ CGK FSQ++ L
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSIL 28
Score = 29.0 bits (66), Expect = 0.59
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
+G K Y C C K F++ L+ H++ H
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 27.9 bits (63), Expect = 1.4
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C KTF++K L H R HT
Sbjct: 15 CNECGKTFSQKSILSAHQRT-HT 36
Score = 27.5 bits (62), Expect = 2.2
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
C CGK F +KS L AH
Sbjct: 14 GCNECGKTFSQKSILSAH 31
Score = 27.1 bits (61), Expect = 2.9
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K+F++K L H R H G P
Sbjct: 15 CNECGKTFSQKSILSAHQRT-HTGEKP 40
Score = 26.3 bits (59), Expect = 4.4
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
K + C +C K FS + L+ H H K
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQR-THTGEKPSGP 43
Score = 26.0 bits (58), Expect = 6.1
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
C C KTF++K L H R
Sbjct: 14 GCNECGKTFSQKSILSAHQR 33
Score = 26.0 bits (58), Expect = 6.6
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C C KTF++K L H + HT
Sbjct: 15 CNECGKTFSQKSILSAHQRT-HT 36
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.002
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K + C CGK F+Q+ NL +H
Sbjct: 1 GSSGSSGTGEKPYRCGECGKAFAQKANLTQH 31
Score = 32.1 bits (74), Expect = 0.044
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNL 92
K + C CGK F+Q+ NL
Sbjct: 1 GSSGSSGTGEKPYRCGECGKAFAQKANL 28
Score = 30.2 bits (69), Expect = 0.18
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C C K F + L H+++H
Sbjct: 2 SSGSSGTGEKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 29.4 bits (67), Expect = 0.42
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKH 66
+ K ++C +C K F+ A L +H
Sbjct: 2 SSGSSGTGE--KPYRCGECGKAFAQKANLTQH 31
Score = 27.9 bits (63), Expect = 1.2
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K F +K +L +H RI HT
Sbjct: 15 CGECGKAFAQKANLTQHQRI-HT 36
Score = 27.9 bits (63), Expect = 1.3
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 714 RCELCDKSFTRKDSLKKHNRIFHGGADP 741
RC C K+F +K +L +H RI H G P
Sbjct: 14 RCGECGKAFAQKANLTQHQRI-HTGEKP 40
Score = 27.9 bits (63), Expect = 1.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
+C CGK F +K+NL H
Sbjct: 14 RCGECGKAFAQKANLTQH 31
Score = 26.7 bits (60), Expect = 3.9
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C C K F +K +L +H +I HT
Sbjct: 15 CGECGKAFAQKANLTQHQRI-HT 36
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.002
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K ++C+ CGK F+Q ++L RH
Sbjct: 1 GSSGSSGTGKKPYKCNECGKVFTQNSHLARH 31
Score = 31.7 bits (73), Expect = 0.056
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNLKR 94
K ++C+ CGK F+Q ++L R
Sbjct: 1 GSSGSSGTGKKPYKCNECGKVFTQNSHLAR 30
Score = 30.2 bits (69), Expect = 0.23
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 36 HLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
K K +KC +C K F+ N+ L +H IH K
Sbjct: 3 SGSSGTGK--KPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.34
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C C K FT+ L H+ +H
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 27.5 bits (62), Expect = 2.2
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K FT+ L +H I H G P
Sbjct: 15 CNECGKVFTQNSHLARHRGI-HTGEKP 40
Score = 27.1 bits (61), Expect = 2.6
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K FT+ L +H I HT
Sbjct: 15 CNECGKVFTQNSHLARHRGI-HT 36
Score = 26.7 bits (60), Expect = 3.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
KC CGKVF + S+L H
Sbjct: 14 KCNECGKVFTQNSHLARH 31
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.5 bits (83), Expect = 0.003
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 119 HQRL----KLHECDLCGKNFSQRNNLKRH 143
+ + C +CGK F+ R+NL +H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKH 31
Score = 32.1 bits (74), Expect = 0.050
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Query: 71 HQRL----KLHECDLCGKNFSQRNNL 92
+ + C +CGK F+ R+NL
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNL 28
Score = 30.5 bits (70), Expect = 0.14
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G + Y C +C K FT L H+K+H
Sbjct: 2 SSGSSGTGERPYICTVCGKAFTDRSNLIKHQKIH 35
Score = 29.0 bits (66), Expect = 0.49
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
CT+C K FT + +L KH +I HT
Sbjct: 15 CTVCGKAFTDRSNLIKHQKI-HT 36
Score = 29.0 bits (66), Expect = 0.56
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C +C K+FT + +L KH +I H G P
Sbjct: 15 CTVCGKAFTDRSNLIKHQKI-HTGEKP 40
Score = 27.8 bits (63), Expect = 1.5
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
C CGK F +SNL H
Sbjct: 14 ICTVCGKAFTDRSNLIKH 31
Score = 27.8 bits (63), Expect = 1.7
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
+ + + C C K F+ + L KH IH K
Sbjct: 2 SSGSSGTGE--RPYICTVCGKAFTDRSNLIKHQK-IHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 2.5
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C +C K FT + +L KH KI HT
Sbjct: 15 CTVCGKAFTDRSNLIKHQKI-HT 36
Score = 25.9 bits (58), Expect = 6.1
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
C +C K FT + +L KH +
Sbjct: 14 ICTVCGKAFTDRSNLIKHQK 33
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 0.003
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K +EC CGK+F +++ L H
Sbjct: 1 GSSGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
Score = 32.5 bits (75), Expect = 0.034
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNL 92
K +EC CGK+F +++ L
Sbjct: 1 GSSGSSGTGEKPYECSDCGKSFIKKSQL 28
Score = 30.2 bits (69), Expect = 0.18
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C C K F + +L++H+++H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIH 35
Score = 29.8 bits (68), Expect = 0.32
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C KSF +K L H RI H G +P
Sbjct: 15 CSDCGKSFIKKSQLHVHQRI-HTGENP 40
Score = 29.8 bits (68), Expect = 0.33
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C+ C K+F +K L H RI HT
Sbjct: 15 CSDCGKSFIKKSQLHVHQRI-HT 36
Score = 27.5 bits (62), Expect = 1.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
+C CGK F+KKS L H
Sbjct: 14 ECSDCGKSFIKKSQLHVH 31
Score = 27.1 bits (61), Expect = 2.9
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 9/38 (23%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQRL----KLHEC 79
K ++C C K F ++L+ +HQR+
Sbjct: 11 KPYECSDCGKSFIKKSQLH-----VHQRIHTGENPSGP 43
Score = 26.3 bits (59), Expect = 4.7
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C C K+F +K L H +I HT
Sbjct: 15 CSDCGKSFIKKSQLHVHQRI-HT 36
Score = 26.3 bits (59), Expect = 4.7
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
+C C K+F +K L H R
Sbjct: 14 ECSDCGKSFIKKSQLHVHQR 33
Score = 26.0 bits (58), Expect = 7.7
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
G + +C C K F + L H + T
Sbjct: 1 GSSGSSGTGEKPYECSDCGKSFIKKSQLHVHQRIHT 36
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 35.5 bits (83), Expect = 0.003
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K ++C+ CGK +++R NL H
Sbjct: 1 GSSGSSGSVEKPYKCEDCGKGYNRRLNLDMH 31
Score = 33.6 bits (78), Expect = 0.014
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
+ K Y CE C K + R L++H+++H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVH 35
Score = 32.1 bits (74), Expect = 0.046
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNL 92
K ++C+ CGK +++R NL
Sbjct: 1 GSSGSSGSVEKPYKCEDCGKGYNRRLNL 28
Score = 29.4 bits (67), Expect = 0.37
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
KCE CGK + ++ NL H
Sbjct: 14 KCEDCGKGYNRRLNLDMH 31
Score = 29.0 bits (66), Expect = 0.47
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 36 HLKIHDDKESKRFKCEQCDKRFSSNAELNKH 66
+ K +KCE C K ++ L+ H
Sbjct: 3 SGSSGSVE--KPYKCEDCGKGYNRRLNLDMH 31
Score = 29.0 bits (66), Expect = 0.53
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
CE C K + R+ +L H R+ H G
Sbjct: 15 CEDCGKGYNRRLNLDMHQRV-HMGEKT 40
Score = 28.2 bits (64), Expect = 1.0
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K + R+ +L H R+ H
Sbjct: 15 CEDCGKGYNRRLNLDMHQRV-HM 36
Score = 28.2 bits (64), Expect = 1.2
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHTRRNPSA-NSG 598
CE C K + R+ +L H ++ H S +SG
Sbjct: 15 CEDCGKGYNRRLNLDMHQRV-HMGEKTSGPSSG 46
Score = 26.7 bits (60), Expect = 3.5
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
G + +C C K ++R NL H +
Sbjct: 1 GSSGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHM 36
Score = 26.7 bits (60), Expect = 4.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 20 CELCYKVFESRENLMRHLKIH 40
CE C K + R NL H ++H
Sbjct: 15 CEDCGKGYNRRLNLDMHQRVH 35
Score = 26.3 bits (59), Expect = 5.8
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 508 CRICSKTFTRKDSLRKHMR 526
C C K + R+ +L H R
Sbjct: 15 CEDCGKGYNRRLNLDMHQR 33
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 40.2 bits (93), Expect = 0.003
Identities = 20/168 (11%), Positives = 49/168 (29%), Gaps = 9/168 (5%)
Query: 591 RNPSANSGNSGTSAPPAVKLEQNGGEKVENSTSVENSTSVENSTSVENSANVENTSSVDN 650
R + + ++ S + + S + + + + V + S +
Sbjct: 3 RRSARKAQSAIASPADTNVVPAKDAPTTNSPPSTTSPNQAAADANQQQAGIVSSQSGPNA 62
Query: 651 RTSVGPVAPIDRIPCTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFI 710
P + ++ + T ++ + + PQ V + +
Sbjct: 63 VGDSAPSSSVNNDGDIITRPTSDSIAAVANATKPAAVVSDPQSMKVTPIVNPSS------ 116
Query: 711 DRIRCELCDKSFTRKDSLKKHNRIFHG-GADPKVMDEQMARGSADFLE 757
C +C+ F+ +L +H R H A + + FL
Sbjct: 117 --YVCNVCNARFSTMSALSEHLRSDHRDDASTLLATPMINNAIRSFLT 162
Score = 35.9 bits (82), Expect = 0.062
Identities = 9/45 (20%), Positives = 20/45 (44%)
Query: 766 GEPVSITNEILCKICNRTFTRNYNLKKHMKTVHKIDDNEPYFAYE 810
P+ + +C +CN F+ L +H+++ H+ D +
Sbjct: 108 VTPIVNPSSYVCNVCNARFSTMSALSEHLRSDHRDDASTLLATPM 152
Score = 35.6 bits (81), Expect = 0.082
Identities = 25/185 (13%), Positives = 53/185 (28%), Gaps = 20/185 (10%)
Query: 382 NEDRENQS---EEENYTPVPEVSIKRETDPLSVEDIISAGEVSITPIPQSNTNNHGSGST 438
R+ QS + VP P + +P + N
Sbjct: 4 RSARKAQSAIASPADTNVVPAKDAPTTNSP----------PSTTSPNQAAADANQQQAGI 53
Query: 439 NNTQANKIIQCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPNILEVILQEGK 498
++Q+ + D + T S A+ + ++
Sbjct: 54 VSSQSGPNAVGDSAPSSSVNNDG---DIITRPTSDSIAAVANATKPAAVVSDPQSMKVTP 110
Query: 499 VPNNNAIIQCRICSKTFTRKDSLRKHMRRFHIINDTNVKKEFTEGQINRNMLDVILKESG 558
+ N ++ C +C+ F+ +L +H+R H + + + IN + +
Sbjct: 111 IVNPSSY-VCNVCNARFSTMSALSEHLRSDHRDDASTL---LATPMINNAIRSFLTAWDD 166
Query: 559 HEIKS 563
I S
Sbjct: 167 IRILS 171
Score = 33.2 bits (75), Expect = 0.49
Identities = 12/101 (11%), Positives = 32/101 (31%), Gaps = 9/101 (8%)
Query: 379 NEENEDRENQSEEENYTPVPEVSIKR--ETDPLSVEDIISAGEVSITPIPQSNTNNHGSG 436
N+ D Q + ++ + ++ + I S + +N +
Sbjct: 40 NQAAADANQQQAGIVSSQSGPNAVGDSAPSSSVNNDGDIITRPTSDSIAAVANATKPAAV 99
Query: 437 STN-------NTQANKIIQCHICLKTFAKKDSLKKHMKVFH 470
++ C++C F+ +L +H++ H
Sbjct: 100 VSDPQSMKVTPIVNPSSYVCNVCNARFSTMSALSEHLRSDH 140
Score = 32.9 bits (74), Expect = 0.57
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 120 QRLKLHECDLCGKNFSQRNNLKRHLEEVHRTDG 152
+ C++C FS + L HL HR D
Sbjct: 112 VNPSSYVCNVCNARFSTMSALSEHLRSDHRDDA 144
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.003
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
+EC CGK FS++ L H
Sbjct: 1 GSSGSSGTGENPYECHECGKAFSRKYQLISH 31
Score = 32.5 bits (75), Expect = 0.035
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 4/28 (14%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNL 92
+EC CGK FS++ L
Sbjct: 1 GSSGSSGTGENPYECHECGKAFSRKYQL 28
Score = 30.2 bits (69), Expect = 0.20
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G Y C C K F+R Y+L H++ H
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTH 35
Score = 29.0 bits (66), Expect = 0.61
Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K F+RK L H R H
Sbjct: 15 CHECGKAFSRKYQLISHQRT-HA 36
Score = 27.9 bits (63), Expect = 1.3
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K+F+RK L H R H G P
Sbjct: 15 CHECGKAFSRKYQLISHQRT-HAGEKP 40
Score = 26.7 bits (60), Expect = 3.5
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 11/49 (22%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRL----KLHEC 79
+ ++C +C K FS +L HQR K
Sbjct: 2 SSGSSGTGE--NPYECHECGKAFSRKYQL-----ISHQRTHAGEKPSGP 43
Score = 26.3 bits (59), Expect = 5.3
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
G +N +C C K FSR Y L H +T
Sbjct: 1 GSSGSSGTGENPYECHECGKAFSRKYQLISHQRTHA 36
Score = 25.9 bits (58), Expect = 6.6
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C C K F+RK L H + H
Sbjct: 15 CHECGKAFSRKYQLISHQRT-HA 36
Score = 25.9 bits (58), Expect = 7.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
+C CGK F +K L +H
Sbjct: 14 ECHECGKAFSRKYQLISH 31
Score = 25.5 bits (57), Expect = 8.2
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
+C C K F+RK L H R
Sbjct: 14 ECHECGKAFSRKYQLISHQR 33
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.003
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
KL+ C CGK+FS+ L +H
Sbjct: 1 GSSGSSGTGEKLYNCKECGKSFSRAPCLLKH 31
Score = 31.3 bits (72), Expect = 0.073
Identities = 9/28 (32%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNL 92
KL+ C CGK+FS+ L
Sbjct: 1 GSSGSSGTGEKLYNCKECGKSFSRAPCL 28
Score = 31.3 bits (72), Expect = 0.078
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C+ C K F+R L H++LH
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLH 35
Score = 29.0 bits (66), Expect = 0.59
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C+ C KSF+R L KH R+ H G P
Sbjct: 15 CKECGKSFSRAPCLLKHERL-HSGEKP 40
Score = 28.3 bits (64), Expect = 0.96
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 36 HLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
+ K + C++C K FS L KH +H K
Sbjct: 3 SGSSGTGE--KLYNCKECGKSFSRAPCLLKHER-LHSGEKPSGP 43
Score = 28.3 bits (64), Expect = 1.0
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K+F+R L KH R+ H+
Sbjct: 15 CKECGKSFSRAPCLLKHERL-HS 36
Score = 27.5 bits (62), Expect = 1.7
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
G + C+ C K FSR L +H + +
Sbjct: 1 GSSGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHS 36
Score = 27.5 bits (62), Expect = 1.8
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHTRRNPSA-NSG 598
C+ C K+F+R L KH ++ H+ PS +SG
Sbjct: 15 CKECGKSFSRAPCLLKHERL-HSGEKPSGPSSG 46
Score = 26.3 bits (59), Expect = 5.3
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
C+ CGK F + L H
Sbjct: 14 NCKECGKSFSRAPCLLKH 31
Score = 25.6 bits (57), Expect = 8.3
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
C+ C K+F+R L KH R
Sbjct: 14 NCKECGKSFSRAPCLLKHER 33
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.003
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K ++C+ CGK F R++L H
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFRARSSLAIH 31
Score = 31.7 bits (73), Expect = 0.054
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNL 92
K ++C+ CGK F R++L
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFRARSSL 28
Score = 29.8 bits (68), Expect = 0.32
Identities = 11/34 (32%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C C K F L IH+ H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFRARSSLAIHQATH 35
Score = 28.3 bits (64), Expect = 0.90
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 11/49 (22%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRL----KLHEC 79
+ K +KC +C K F + + L AIHQ K
Sbjct: 2 SSGSSGTGE--KPYKCNECGKAFRARSSL-----AIHQATHSGEKPSGP 43
Score = 27.5 bits (62), Expect = 1.7
Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K F + SL H H+
Sbjct: 15 CNECGKAFRARSSLAIHQAT-HS 36
Score = 27.5 bits (62), Expect = 2.2
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K+F + SL H H G P
Sbjct: 15 CNECGKAFRARSSLAIHQAT-HSGEKP 40
Score = 27.1 bits (61), Expect = 2.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
KC CGK F +S+L H
Sbjct: 14 KCNECGKAFRARSSLAIH 31
Score = 25.6 bits (57), Expect = 9.3
Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C C K F + SL H H+
Sbjct: 15 CNECGKAFRARSSLAIHQAT-HS 36
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 35.2 bits (82), Expect = 0.003
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 115 SSAIHQRLKLHECDLCGKNFSQRNNLKRHL 144
SS K + C++CG F LK HL
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHL 31
Score = 34.0 bits (79), Expect = 0.007
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 664 PCTLCDKTFTRKDSLKKHIRIFHT 687
PC +C F +LK H+RI HT
Sbjct: 13 PCEICGTRFRHLQTLKSHLRI-HT 35
Score = 32.9 bits (76), Expect = 0.020
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y CEIC F + L H ++H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 32.9 bits (76), Expect = 0.024
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 714 RCELCDKSFTRKDSLKKHNRIFHGG 738
CE+C F +LK H RI H G
Sbjct: 13 PCEICGTRFRHLQTLKSHLRI-HTG 36
Score = 32.5 bits (75), Expect = 0.033
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
C IC F +L+ H+R
Sbjct: 13 PCEICGTRFRHLQTLKSHLR 32
Score = 31.7 bits (73), Expect = 0.052
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 566 PCELCYKTFTRKDSLRKHMKIFHT 589
PCE+C F +L+ H++I HT
Sbjct: 13 PCEICGTRFRHLQTLKSHLRI-HT 35
Score = 31.3 bits (72), Expect = 0.067
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 214 KCEFCGKVFLKKSNLKAHI 232
CE CG F LK+H+
Sbjct: 13 PCEICGTRFRHLQTLKSHL 31
Score = 31.3 bits (72), Expect = 0.074
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 46 KRFKCEQCDKRFSSNAELNKH 66
K + CE C RF L H
Sbjct: 10 KPYPCEICGTRFRHLQTLKSH 30
Score = 30.9 bits (71), Expect = 0.087
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 67 SSAIHQRLKLHECDLCGKNFSQRNNLKR 94
SS K + C++CG F LK
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKS 29
Score = 30.2 bits (69), Expect = 0.17
Identities = 7/23 (30%), Positives = 9/23 (39%)
Query: 305 QCRFCNKYFSRNYNLKQHMKTCT 327
C C F LK H++ T
Sbjct: 13 PCEICGTRFRHLQTLKSHLRIHT 35
Score = 30.2 bits (69), Expect = 0.19
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNGPK-YT 183
+ C +C +LK HL IH G +
Sbjct: 12 YPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 30.2 bits (69), Expect = 0.21
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 777 CKICNRTFTRNYNLKKHMKT 796
C+IC F LK H++
Sbjct: 14 CEICGTRFRHLQTLKSHLRI 33
Score = 29.4 bits (67), Expect = 0.35
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 448 QCHICLKTFAKKDSLKKHMKVFHT 471
C IC F +LK H+++ HT
Sbjct: 13 PCEICGTRFRHLQTLKSHLRI-HT 35
Score = 25.9 bits (58), Expect = 6.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 20 CELCYKVFESRENLMRHLKIH 40
CE+C F + L HL+IH
Sbjct: 14 CEICGTRFRHLQTLKSHLRIH 34
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.2 bits (82), Expect = 0.003
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 118 IHQRL----KLHECDLCGKNFSQRNNLKRH 143
K ++C+ CGK FSQ + L RH
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARH 31
Score = 31.4 bits (72), Expect = 0.075
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 70 IHQRL----KLHECDLCGKNFSQRNNLKR 94
K ++C+ CGK FSQ + L R
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLAR 30
Score = 28.7 bits (65), Expect = 0.78
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C C K F++ +L H+++H
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVH 35
Score = 28.3 bits (64), Expect = 1.1
Identities = 10/36 (27%), Positives = 13/36 (36%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
G QC C K FS+ L +H + T
Sbjct: 1 GSSGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHT 36
Score = 27.5 bits (62), Expect = 2.0
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 36 HLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
K ++C +C K FS ++L +H +H K
Sbjct: 3 SGSSGTGG--KPYQCNECGKAFSQTSKLARHQR-VHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 2.6
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQP 691
C C K F++ L +H R+ HT +P
Sbjct: 15 CNECGKAFSQTSKLARHQRV-HTGEKP 40
Score = 27.1 bits (61), Expect = 2.9
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K+F++ L +H R+ H G P
Sbjct: 15 CNECGKAFSQTSKLARHQRV-HTGEKP 40
Score = 26.3 bits (59), Expect = 4.3
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
+C CGK F + S L H
Sbjct: 14 QCNECGKAFSQTSKLARH 31
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.004
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K +C+ CGK F+Q ++L H
Sbjct: 1 GSSGSSGSGEKPFQCEECGKRFTQNSHLHSH 31
Score = 31.0 bits (71), Expect = 0.093
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNLKR 94
K +C+ CGK F+Q ++L
Sbjct: 1 GSSGSSGSGEKPFQCEECGKRFTQNSHLHS 30
Score = 31.0 bits (71), Expect = 0.10
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
+ K F+CE+C KRF+ N+ L+ H +H K
Sbjct: 2 SSGSSGSGE--KPFQCEECGKRFTQNSHLHSHQR-VHTGEKPSGP 43
Score = 30.6 bits (70), Expect = 0.17
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
+G K + CE C K FT+ L+ H+++H
Sbjct: 2 SSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 28.3 bits (64), Expect = 0.96
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQP 691
C C K FT+ L H R+ HT +P
Sbjct: 15 CEECGKRFTQNSHLHSHQRV-HTGEKP 40
Score = 28.3 bits (64), Expect = 1.0
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 714 RCELCDKSFTRKDSLKKHNRIFHGGADP 741
+CE C K FT+ L H R+ H G P
Sbjct: 14 QCEECGKRFTQNSHLHSHQRV-HTGEKP 40
Score = 27.1 bits (61), Expect = 2.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
+CE CGK F + S+L +H
Sbjct: 14 QCEECGKRFTQNSHLHSH 31
Score = 26.0 bits (58), Expect = 7.2
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
G + QC C K F++N +L H + T
Sbjct: 1 GSSGSSGSGEKPFQCEECGKRFTQNSHLHSHQRVHT 36
Score = 25.6 bits (57), Expect = 8.5
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
CE C K FT+ L H ++ HT
Sbjct: 15 CEECGKRFTQNSHLHSHQRV-HT 36
Score = 25.6 bits (57), Expect = 9.4
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
QC C K FT+ L H R
Sbjct: 14 QCEECGKRFTQNSHLHSHQR 33
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 34.8 bits (81), Expect = 0.004
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K +EC CGK FSQ +L +H
Sbjct: 1 GSSGSSGTGEKPYECKECGKAFSQTTHLIQH 31
Score = 31.3 bits (72), Expect = 0.093
Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNL 92
K +EC CGK FSQ +L
Sbjct: 1 GSSGSSGTGEKPYECKECGKAFSQTTHL 28
Score = 30.2 bits (69), Expect = 0.21
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
+ K ++C++C K FS L +H +H K
Sbjct: 2 SSGSSGTGE--KPYECKECGKAFSQTTHLIQHQR-VHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.29
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C+ C K F++ L H+++H
Sbjct: 2 SSGSSGTGEKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 27.1 bits (61), Expect = 2.5
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K F++ L +H R+ HT
Sbjct: 15 CKECGKAFSQTTHLIQHQRV-HT 36
Score = 27.1 bits (61), Expect = 2.9
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C+ C K+F++ L +H R+ H G P
Sbjct: 15 CKECGKAFSQTTHLIQHQRV-HTGEKP 40
Score = 25.9 bits (58), Expect = 6.5
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQH 322
G + +C+ C K FS+ +L QH
Sbjct: 1 GSSGSSGTGEKPYECKECGKAFSQTTHLIQH 31
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.004
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
+ H+C+ CGK+F Q +L +H
Sbjct: 1 GSSGSSGTGERPHKCNECGKSFIQSAHLIQH 31
Score = 31.3 bits (72), Expect = 0.093
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNL 92
+ H+C+ CGK+F Q +L
Sbjct: 1 GSSGSSGTGERPHKCNECGKSFIQSAHL 28
Score = 30.2 bits (69), Expect = 0.18
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G + + C C K F + L H+++H
Sbjct: 2 SSGSSGTGERPHKCNECGKSFIQSAHLIQHQRIH 35
Score = 29.4 bits (67), Expect = 0.46
Identities = 11/49 (22%), Positives = 16/49 (32%), Gaps = 11/49 (22%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRL----KLHEC 79
+ + KC +C K F +A L HQR+ K
Sbjct: 2 SSGSSGTGE--RPHKCNECGKSFIQSAHL-----IQHQRIHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 1.2
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C KSF + L +H RI H G P
Sbjct: 15 CNECGKSFIQSAHLIQHQRI-HTGEKP 40
Score = 27.5 bits (62), Expect = 1.7
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQP 691
C C K+F + L +H RI HT +P
Sbjct: 15 CNECGKSFIQSAHLIQHQRI-HTGEKP 40
Score = 26.3 bits (59), Expect = 5.0
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
KC CGK F++ ++L H
Sbjct: 14 KCNECGKSFIQSAHLIQH 31
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 34.8 bits (81), Expect = 0.004
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K + C C K FS ++ L H
Sbjct: 1 GSSGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
Score = 32.5 bits (75), Expect = 0.035
Identities = 7/28 (25%), Positives = 10/28 (35%), Gaps = 4/28 (14%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNL 92
K + C C K FS ++ L
Sbjct: 1 GSSGSSGTGVKPYGCSQCAKTFSLKSQL 28
Score = 30.2 bits (69), Expect = 0.22
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C CAK F+ +L +H++ H
Sbjct: 2 SSGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSH 35
Score = 28.7 bits (65), Expect = 0.85
Identities = 12/49 (24%), Positives = 16/49 (32%), Gaps = 11/49 (22%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRL----KLHEC 79
K + C QC K FS ++L +HQR K
Sbjct: 2 SSGSSGTGV--KPYGCSQCAKTFSLKSQL-----IVHQRSHTGVKPSGP 43
Score = 28.3 bits (64), Expect = 0.86
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C+ C KTF+ K L H R HT
Sbjct: 15 CSQCAKTFSLKSQLIVHQRS-HT 36
Score = 27.5 bits (62), Expect = 1.9
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K+F+ K L H R H G P
Sbjct: 15 CSQCAKTFSLKSQLIVHQRS-HTGVKP 40
Score = 26.7 bits (60), Expect = 3.1
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
C C K F KS L H
Sbjct: 14 GCSQCAKTFSLKSQLIVH 31
Score = 26.3 bits (59), Expect = 4.8
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
C C+KTF+ K L H R
Sbjct: 14 GCSQCAKTFSLKSQLIVHQR 33
Score = 26.0 bits (58), Expect = 6.5
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C C KTF+ K L H + HT
Sbjct: 15 CSQCAKTFSLKSQLIVHQRS-HT 36
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.004
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K EC C K F+ ++NL H
Sbjct: 1 GSSGSSGTGEKPFECSECQKAFNTKSNLIVH 31
Score = 31.7 bits (73), Expect = 0.054
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 4/28 (14%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNL 92
K EC C K F+ ++NL
Sbjct: 1 GSSGSSGTGEKPFECSECQKAFNTKSNL 28
Score = 29.8 bits (68), Expect = 0.26
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K + C C K F L +H++ H
Sbjct: 2 SSGSSGTGEKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 28.2 bits (64), Expect = 0.99
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 7/39 (17%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQR 73
+ K F+C +C K F++ + L +HQR
Sbjct: 2 SSGSSGTGE--KPFECSECQKAFNTKSNL-----IVHQR 33
Score = 27.8 bits (63), Expect = 1.4
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C+ C K F K +L H R HT
Sbjct: 15 CSECQKAFNTKSNLIVHQRT-HT 36
Score = 27.4 bits (62), Expect = 2.0
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
+C C K F KSNL H
Sbjct: 14 ECSECQKAFNTKSNLIVH 31
Score = 27.4 bits (62), Expect = 2.0
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K+F K +L H R H G P
Sbjct: 15 CSECQKAFNTKSNLIVHQRT-HTGEKP 40
Score = 25.5 bits (57), Expect = 10.0
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C C K F K +L H + HT
Sbjct: 15 CSECQKAFNTKSNLIVHQRT-HT 36
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.005
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 119 HQRL----KLHECDLCGKNFSQRNNLKRH 143
K ++C CGK + +R +L H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
Score = 31.0 bits (71), Expect = 0.11
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 71 HQRL----KLHECDLCGKNFSQRNNLKR 94
K ++C CGK + +R +L
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDF 30
Score = 30.6 bits (70), Expect = 0.15
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECD 80
K +KC +C K + +L+ H +H KL
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQR-VHTGEKLSGPS 44
Score = 30.2 bits (69), Expect = 0.19
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
+G K Y C C K + R +L+ H+++H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 29.8 bits (68), Expect = 0.30
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K + R+ L H R+ H G
Sbjct: 15 CVECGKGYKRRLDLDFHQRV-HTGEKL 40
Score = 29.4 bits (67), Expect = 0.40
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K + R+ L H R+ HT
Sbjct: 15 CVECGKGYKRRLDLDFHQRV-HT 36
Score = 28.7 bits (65), Expect = 0.69
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
KC CGK + ++ +L H
Sbjct: 14 KCVECGKGYKRRLDLDFH 31
Score = 28.3 bits (64), Expect = 1.2
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
G + +C C K + R +L H + T
Sbjct: 1 GSSGSSGSGEKPYKCVECGKGYKRRLDLDFHQRVHT 36
Score = 26.7 bits (60), Expect = 3.7
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C C K + R+ L H ++ HT
Sbjct: 15 CVECGKGYKRRLDLDFHQRV-HT 36
Score = 26.0 bits (58), Expect = 7.6
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
+C C K + R+ L H R
Sbjct: 14 KCVECGKGYKRRLDLDFHQR 33
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.005
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K +C CGK+++QR +L +H
Sbjct: 1 GSSGSSGTGEKPFKCGECGKSYNQRVHLTQH 31
Score = 31.0 bits (71), Expect = 0.11
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNLKR 94
K +C CGK+++QR +L +
Sbjct: 1 GSSGSSGTGEKPFKCGECGKSYNQRVHLTQ 30
Score = 30.2 bits (69), Expect = 0.23
Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K + C C K + + L H+++H
Sbjct: 2 SSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 29.8 bits (68), Expect = 0.25
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
+ K FKC +C K ++ L +H +H K
Sbjct: 2 SSGSSGTGE--KPFKCGECGKSYNQRVHLTQHQR-VHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 1.9
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQP 691
C C K++ ++ L +H R+ HT +P
Sbjct: 15 CGECGKSYNQRVHLTQHQRV-HTGEKP 40
Score = 27.5 bits (62), Expect = 2.0
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
G + +C C K +++ +L QH + T
Sbjct: 1 GSSGSSGTGEKPFKCGECGKSYNQRVHLTQHQRVHT 36
Score = 27.1 bits (61), Expect = 2.3
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C KS+ ++ L +H R+ H G P
Sbjct: 15 CGECGKSYNQRVHLTQHQRV-HTGEKP 40
Score = 26.7 bits (60), Expect = 3.9
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
KC CGK + ++ +L H
Sbjct: 14 KCGECGKSYNQRVHLTQH 31
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.005
Identities = 9/31 (29%), Positives = 11/31 (35%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K +C CGK FS L +H
Sbjct: 1 GSSGSSGTGEKPFDCIDCGKAFSDHIGLNQH 31
Score = 30.9 bits (71), Expect = 0.12
Identities = 8/30 (26%), Positives = 10/30 (33%), Gaps = 4/30 (13%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNLKR 94
K +C CGK FS L +
Sbjct: 1 GSSGSSGTGEKPFDCIDCGKAFSDHIGLNQ 30
Score = 29.8 bits (68), Expect = 0.29
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K + C C K F+ LN H+++H
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 29.4 bits (67), Expect = 0.34
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
K F C C K FS + LN+H IH K
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRR-IHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 1.7
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNGPK-YTCE 185
F+C C K + L +H IH G K
Sbjct: 13 FDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 1.8
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K+F+ L +H RI H G P
Sbjct: 15 CIDCGKAFSDHIGLNQHRRI-HTGEKP 40
Score = 27.5 bits (62), Expect = 2.1
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K F+ L +H RI HT
Sbjct: 15 CIDCGKAFSDHIGLNQHRRI-HT 36
Score = 26.7 bits (60), Expect = 3.3
Identities = 7/18 (38%), Positives = 7/18 (38%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
C CGK F L H
Sbjct: 14 DCIDCGKAFSDHIGLNQH 31
Score = 26.3 bits (59), Expect = 4.4
Identities = 10/36 (27%), Positives = 13/36 (36%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
G + C C K FS + L QH + T
Sbjct: 1 GSSGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHT 36
Score = 25.9 bits (58), Expect = 7.3
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHTRRNPS 594
C C K F+ L +H +I HT PS
Sbjct: 15 CIDCGKAFSDHIGLNQHRRI-HTGEKPS 41
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.005
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K EC CGK F++++ L H
Sbjct: 1 GSSGSSGTGGKHFECTECGKAFTRKSTLSMH 31
Score = 31.3 bits (72), Expect = 0.075
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNL 92
K EC CGK F++++ L
Sbjct: 1 GSSGSSGTGGKHFECTECGKAFTRKSTL 28
Score = 30.6 bits (70), Expect = 0.16
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K + C C K FTR L++H+K+H
Sbjct: 2 SSGSSGTGGKHFECTECGKAFTRKSTLSMHQKIH 35
Score = 29.8 bits (68), Expect = 0.33
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
CT C K FTRK +L H +I HT
Sbjct: 15 CTECGKAFTRKSTLSMHQKI-HT 36
Score = 29.0 bits (66), Expect = 0.58
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K+FTRK +L H +I H G P
Sbjct: 15 CTECGKAFTRKSTLSMHQKI-HTGEKP 40
Score = 27.5 bits (62), Expect = 1.7
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 7/39 (17%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQR 73
K F+C +C K F+ + L ++HQ+
Sbjct: 2 SSGSSGTGG--KHFECTECGKAFTRKSTL-----SMHQK 33
Score = 27.1 bits (61), Expect = 2.3
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C C K FTRK +L H KI HT
Sbjct: 15 CTECGKAFTRKSTLSMHQKI-HT 36
Score = 27.1 bits (61), Expect = 2.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
+C CGK F +KS L H
Sbjct: 14 ECTECGKAFTRKSTLSMH 31
Score = 26.7 bits (60), Expect = 3.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
+C C K FTRK +L H +
Sbjct: 14 ECTECGKAFTRKSTLSMHQK 33
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 0.005
Identities = 9/31 (29%), Positives = 11/31 (35%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K +C CGK F Q +L H
Sbjct: 1 GSSGSSGSGEKPFKCKECGKAFRQNIHLASH 31
Score = 31.7 bits (73), Expect = 0.068
Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
+ K FKC++C K F N L H IH K
Sbjct: 2 SSGSSGSGE--KPFKCKECGKAFRQNIHLASHLR-IHTGEKPSGP 43
Score = 30.9 bits (71), Expect = 0.12
Identities = 8/30 (26%), Positives = 10/30 (33%), Gaps = 4/30 (13%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNLKR 94
K +C CGK F Q +L
Sbjct: 1 GSSGSSGSGEKPFKCKECGKAFRQNIHLAS 30
Score = 30.5 bits (70), Expect = 0.17
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
+G K + C+ C K F + L H ++H
Sbjct: 2 SSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIH 35
Score = 27.8 bits (63), Expect = 1.5
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K F + L H+RI HT
Sbjct: 15 CKECGKAFRQNIHLASHLRI-HT 36
Score = 27.5 bits (62), Expect = 2.2
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C+ C K+F + L H RI H G P
Sbjct: 15 CKECGKAFRQNIHLASHLRI-HTGEKP 40
Score = 26.7 bits (60), Expect = 4.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
KC+ CGK F + +L +H
Sbjct: 14 KCKECGKAFRQNIHLASH 31
Score = 25.9 bits (58), Expect = 8.0
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
G + +C+ C K F +N +L H++ T
Sbjct: 1 GSSGSSGSGEKPFKCKECGKAFRQNIHLASHLRIHT 36
Score = 25.5 bits (57), Expect = 8.5
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C+ C K F + L H++I HT
Sbjct: 15 CKECGKAFRQNIHLASHLRI-HT 36
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.006
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K ++CD+C K+F ++L H
Sbjct: 1 GSSGSSGTGEKPYKCDVCHKSFRYGSSLTVH 31
Score = 31.3 bits (72), Expect = 0.077
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C++C K F L +H+++H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIH 35
Score = 30.9 bits (71), Expect = 0.12
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNL 92
K ++CD+C K+F ++L
Sbjct: 1 GSSGSSGTGEKPYKCDVCHKSFRYGSSL 28
Score = 29.0 bits (66), Expect = 0.49
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C++C KSF SL H RI H G P
Sbjct: 15 CDVCHKSFRYGSSLTVHQRI-HTGEKP 40
Score = 29.0 bits (66), Expect = 0.54
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 5/28 (17%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQR 73
K +KC+ C K F + L +HQR
Sbjct: 11 KPYKCDVCHKSFRYGSSL-----TVHQR 33
Score = 29.0 bits (66), Expect = 0.56
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
KC+ C K F S+L H
Sbjct: 14 KCDVCHKSFRYGSSLTVH 31
Score = 28.2 bits (64), Expect = 0.92
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C +C K+F SL H RI HT
Sbjct: 15 CDVCHKSFRYGSSLTVHQRI-HT 36
Score = 26.3 bits (59), Expect = 5.1
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C++C+K+F SL H +I HT
Sbjct: 15 CDVCHKSFRYGSSLTVHQRI-HT 36
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.006
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K + C CGK FS ++ L H
Sbjct: 1 GSSGSSGAGEKPYGCSECGKAFSSKSYLIIH 31
Score = 31.4 bits (72), Expect = 0.074
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C C K F+ L IH + H
Sbjct: 2 SSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTH 35
Score = 31.4 bits (72), Expect = 0.079
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 4/28 (14%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNL 92
K + C CGK FS ++ L
Sbjct: 1 GSSGSSGAGEKPYGCSECGKAFSSKSYL 28
Score = 28.7 bits (65), Expect = 0.78
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 7/39 (17%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQR 73
+ K + C +C K FSS + L IH R
Sbjct: 2 SSGSSGAGE--KPYGCSECGKAFSSKSYL-----IIHMR 33
Score = 27.9 bits (63), Expect = 1.2
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQP 691
C+ C K F+ K L H+R H+ +P
Sbjct: 15 CSECGKAFSSKSYLIIHMRT-HSGEKP 40
Score = 26.7 bits (60), Expect = 3.6
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K+F+ K L H R H G P
Sbjct: 15 CSECGKAFSSKSYLIIHMRT-HSGEKP 40
Score = 26.4 bits (59), Expect = 5.0
Identities = 9/18 (50%), Positives = 9/18 (50%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
C CGK F KS L H
Sbjct: 14 GCSECGKAFSSKSYLIIH 31
Score = 26.0 bits (58), Expect = 7.1
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
C C K F+ K L HMR
Sbjct: 14 GCSECGKAFSSKSYLIIHMR 33
Score = 25.6 bits (57), Expect = 8.2
Identities = 10/36 (27%), Positives = 13/36 (36%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
G + C C K FS L HM+T +
Sbjct: 1 GSSGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHS 36
Score = 25.6 bits (57), Expect = 8.7
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C C K F+ K L HM+ H+
Sbjct: 15 CSECGKAFSSKSYLIIHMRT-HS 36
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.006
Identities = 10/29 (34%), Positives = 11/29 (37%), Gaps = 4/29 (13%)
Query: 119 HQRL----KLHECDLCGKNFSQRNNLKRH 143
K + CD CGK F L RH
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRH 31
Score = 30.9 bits (71), Expect = 0.12
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
+G K Y C+ C K F EL H+++H
Sbjct: 2 SSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIH 35
Score = 30.6 bits (70), Expect = 0.15
Identities = 9/28 (32%), Positives = 10/28 (35%), Gaps = 4/28 (14%)
Query: 71 HQRL----KLHECDLCGKNFSQRNNLKR 94
K + CD CGK F L R
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVR 30
Score = 30.6 bits (70), Expect = 0.15
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
+ K + C+ C K F +AEL +H IH K
Sbjct: 2 SSGSSGSGE--KPYVCDYCGKAFGLSAELVRHQR-IHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 1.8
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C+ C K+F L +H RI H G P
Sbjct: 15 CDYCGKAFGLSAELVRHQRI-HTGEKP 40
Score = 27.1 bits (61), Expect = 2.8
Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K F L +H RI HT
Sbjct: 15 CDYCGKAFGLSAELVRHQRI-HT 36
Score = 27.1 bits (61), Expect = 3.1
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
G + C +C K F + L +H + T
Sbjct: 1 GSSGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHT 36
Score = 26.7 bits (60), Expect = 3.6
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
C++CGK F + L H
Sbjct: 14 VCDYCGKAFGLSAELVRH 31
Score = 25.6 bits (57), Expect = 8.3
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C+ C K F L +H +I HT
Sbjct: 15 CDYCGKAFGLSAELVRHQRI-HT 36
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.007
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K + C+ CGK+F Q+++L RH
Sbjct: 1 GSSGSSGTGEKPYICNECGKSFIQKSHLNRH 31
Score = 30.6 bits (70), Expect = 0.15
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNLKR 94
K + C+ CGK+F Q+++L R
Sbjct: 1 GSSGSSGTGEKPYICNECGKSFIQKSHLNR 30
Score = 29.8 bits (68), Expect = 0.32
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C C K F + LN H+++H
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 28.6 bits (65), Expect = 0.81
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQP 691
C C K+F +K L +H RI HT +P
Sbjct: 15 CNECGKSFIQKSHLNRHRRI-HTGEKP 40
Score = 28.6 bits (65), Expect = 0.86
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C KSF +K L +H RI H G P
Sbjct: 15 CNECGKSFIQKSHLNRHRRI-HTGEKP 40
Score = 28.2 bits (64), Expect = 1.00
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 36 HLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
+ K + C +C K F + LN+H IH K
Sbjct: 3 SGSSGTGE--KPYICNECGKSFIQKSHLNRHRR-IHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 1.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
C CGK F++KS+L H
Sbjct: 14 ICNECGKSFIQKSHLNRH 31
Score = 26.3 bits (59), Expect = 5.5
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C C K+F +K L +H +I HT
Sbjct: 15 CNECGKSFIQKSHLNRHRRI-HT 36
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 34.4 bits (80), Expect = 0.007
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K +EC+ CGK F ++ L H
Sbjct: 1 GSSGSSGSGEKPYECNECGKAFIWKSLLIVH 31
Score = 31.0 bits (71), Expect = 0.11
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNL 92
K +EC+ CGK F ++ L
Sbjct: 1 GSSGSSGSGEKPYECNECGKAFIWKSLL 28
Score = 31.0 bits (71), Expect = 0.11
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
+G K Y C C K F L +H++ H
Sbjct: 2 SSGSSGSGEKPYECNECGKAFIWKSLLIVHERTH 35
Score = 27.1 bits (61), Expect = 2.2
Identities = 9/23 (39%), Positives = 9/23 (39%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K F K L H R H
Sbjct: 15 CNECGKAFIWKSLLIVHERT-HA 36
Score = 27.1 bits (61), Expect = 2.3
Identities = 8/49 (16%), Positives = 15/49 (30%), Gaps = 11/49 (22%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRL----KLHEC 79
+ K ++C +C K F + L +H+R
Sbjct: 2 SSGSSGSGE--KPYECNECGKAFIWKSLL-----IVHERTHAGVSGPSS 43
Score = 27.1 bits (61), Expect = 2.7
Identities = 10/27 (37%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K+F K L H R H G
Sbjct: 15 CNECGKAFIWKSLLIVHERT-HAGVSG 40
Score = 26.7 bits (60), Expect = 3.8
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
+C C K F K L H R
Sbjct: 14 ECNECGKAFIWKSLLIVHER 33
Score = 26.3 bits (59), Expect = 5.2
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
+C CGK F+ KS L H
Sbjct: 14 ECNECGKAFIWKSLLIVH 31
Score = 26.0 bits (58), Expect = 5.6
Identities = 8/27 (29%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHTRRNP 593
C C K F K L H + H +
Sbjct: 15 CNECGKAFIWKSLLIVHERT-HAGVSG 40
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.007
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K ++C CGK F + ++L RH
Sbjct: 1 GSSGSSGTGEKPYKCHECGKVFRRNSHLARH 31
Score = 31.7 bits (73), Expect = 0.060
Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C C K F R L H+ +H
Sbjct: 2 SSGSSGTGEKPYKCHECGKVFRRNSHLARHQLIH 35
Score = 31.3 bits (72), Expect = 0.087
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
+ K +KC +C K F N+ L +H IH K
Sbjct: 2 SSGSSGTGE--KPYKCHECGKVFRRNSHLARH-QLIHTGEKPSGP 43
Score = 30.5 bits (70), Expect = 0.16
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNLKR 94
K ++C CGK F + ++L R
Sbjct: 1 GSSGSSGTGEKPYKCHECGKVFRRNSHLAR 30
Score = 27.4 bits (62), Expect = 2.0
Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K F R L +H I HT
Sbjct: 15 CHECGKVFRRNSHLARHQLI-HT 36
Score = 27.1 bits (61), Expect = 2.7
Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K F R L +H I H G P
Sbjct: 15 CHECGKVFRRNSHLARHQLI-HTGEKP 40
Score = 26.7 bits (60), Expect = 3.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
KC CGKVF + S+L H
Sbjct: 14 KCHECGKVFRRNSHLARH 31
Score = 25.9 bits (58), Expect = 6.2
Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C C K F R L +H I HT
Sbjct: 15 CHECGKVFRRNSHLARHQLI-HT 36
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 34.4 bits (80), Expect = 0.007
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 119 HQRL----KLHECDLCGKNFSQRNNLKRH 143
K EC CGK+FS + L H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATH 31
Score = 30.9 bits (71), Expect = 0.12
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K + C C K F+ +L H+++H
Sbjct: 2 SSGSSGTGEKPFECAECGKSFSISSQLATHQRIH 35
Score = 30.5 bits (70), Expect = 0.15
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 4/26 (15%)
Query: 71 HQRL----KLHECDLCGKNFSQRNNL 92
K EC CGK+FS + L
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQL 28
Score = 29.4 bits (67), Expect = 0.36
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 7/39 (17%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQR 73
+ K F+C +C K FS +++L A HQR
Sbjct: 2 SSGSSGTGE--KPFECAECGKSFSISSQL-----ATHQR 33
Score = 28.6 bits (65), Expect = 0.69
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K+F+ L H RI HT
Sbjct: 15 CAECGKSFSISSQLATHQRI-HT 36
Score = 28.6 bits (65), Expect = 0.79
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C KSF+ L H RI H G P
Sbjct: 15 CAECGKSFSISSQLATHQRI-HTGEKP 40
Score = 27.5 bits (62), Expect = 1.9
Identities = 12/32 (37%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNGPK-YTCE 185
FEC C K + S L H IH G K
Sbjct: 13 FECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 2.0
Identities = 8/31 (25%), Positives = 11/31 (35%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQH 322
G + +C C K FS + L H
Sbjct: 1 GSSGSSGTGEKPFECAECGKSFSISSQLATH 31
Score = 26.7 bits (60), Expect = 3.2
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
+C CGK F S L H
Sbjct: 14 ECAECGKSFSISSQLATH 31
Score = 26.7 bits (60), Expect = 4.0
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
+C C K+F+ L H R
Sbjct: 14 ECAECGKSFSISSQLATHQR 33
Score = 26.3 bits (59), Expect = 4.4
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C C K+F+ L H +I HT
Sbjct: 15 CAECGKSFSISSQLATHQRI-HT 36
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.4 bits (80), Expect = 0.007
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
KL +C+ C K F+Q ++L H
Sbjct: 1 GSSGSSGAGKKLFKCNECKKTFTQSSSLTVH 31
Score = 30.9 bits (71), Expect = 0.10
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNL 92
KL +C+ C K F+Q ++L
Sbjct: 1 GSSGSSGAGKKLFKCNECKKTFTQSSSL 28
Score = 30.2 bits (69), Expect = 0.24
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K + C C K FT+ L +H+++H
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 29.8 bits (68), Expect = 0.30
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 11/48 (22%)
Query: 36 HLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRL----KLHEC 79
K K FKC +C K F+ ++ L +HQR+ K
Sbjct: 3 SGSSGAGK--KLFKCNECKKTFTQSSSL-----TVHQRIHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.50
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C KTFT+ SL H RI HT
Sbjct: 15 CNECKKTFTQSSSLTVHQRI-HT 36
Score = 28.6 bits (65), Expect = 0.65
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K+FT+ SL H RI H G P
Sbjct: 15 CNECKKTFTQSSSLTVHQRI-HTGEKP 40
Score = 27.9 bits (63), Expect = 1.3
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
KC C K F + S+L H
Sbjct: 14 KCNECKKTFTQSSSLTVH 31
Score = 26.7 bits (60), Expect = 3.4
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C C KTFT+ SL H +I HT
Sbjct: 15 CNECKKTFTQSSSLTVHQRI-HT 36
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 34.0 bits (79), Expect = 0.008
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 115 SSAIHQRLKLHECDLCGKNFSQRNNLKRH 143
SS K ++C+ CG F Q +L+ H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAH 30
Score = 32.1 bits (74), Expect = 0.040
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 714 RCELCDKSFTRKDSLKKHNRIFHGGADP 741
+CE C F + L+ H I H G+ P
Sbjct: 13 KCETCGARFVQVAHLRAHVLI-HTGSGP 39
Score = 31.7 bits (73), Expect = 0.055
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y CE C F +V L H +H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 31.7 bits (73), Expect = 0.055
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 46 KRFKCEQCDKRFSSNAELNKH 66
K +KCE C RF A L H
Sbjct: 10 KPYKCETCGARFVQVAHLRAH 30
Score = 31.3 bits (72), Expect = 0.065
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C F + L+ H+ I HT
Sbjct: 14 CETCGARFVQVAHLRAHVLI-HT 35
Score = 30.6 bits (70), Expect = 0.14
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
KCE CG F++ ++L+AH
Sbjct: 13 KCETCGARFVQVAHLRAH 30
Score = 30.2 bits (69), Expect = 0.17
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
+C C F + LR H+
Sbjct: 13 KCETCGARFVQVAHLRAHVL 32
Score = 30.2 bits (69), Expect = 0.19
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 67 SSAIHQRLKLHECDLCGKNFSQRNNLKR 94
SS K ++C+ CG F Q +L+
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRA 29
Score = 30.2 bits (69), Expect = 0.21
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
CE C F + LR H+ I HT
Sbjct: 14 CETCGARFVQVAHLRAHVLI-HT 35
Score = 28.6 bits (65), Expect = 0.78
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNGPK-YT 183
++C C L+ H+LIH G +
Sbjct: 12 YKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 28.3 bits (64), Expect = 0.90
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 305 QCRFCNKYFSRNYNLKQHMKTCT 327
+C C F + +L+ H+ T
Sbjct: 13 KCETCGARFVQVAHLRAHVLIHT 35
Score = 28.3 bits (64), Expect = 0.94
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 777 CKICNRTFTRNYNLKKHMKT 796
C+ C F + +L+ H+
Sbjct: 14 CETCGARFVQVAHLRAHVLI 33
Score = 25.6 bits (57), Expect = 9.4
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 20 CELCYKVFESRENLMRHLKIH 40
CE C F +L H+ IH
Sbjct: 14 CETCGARFVQVAHLRAHVLIH 34
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.008
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K + C++CGK F +L +H
Sbjct: 1 GSSGSSGTGEKPYSCNVCGKAFVLSAHLNQH 31
Score = 32.1 bits (74), Expect = 0.044
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECD 80
+ K + C C K F +A LN+H +H + L
Sbjct: 2 SSGSSGTGE--KPYSCNVCGKAFVLSAHLNQHLR-VHTQETLSGPS 44
Score = 32.1 bits (74), Expect = 0.049
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y+C +C K F LN H ++H
Sbjct: 2 SSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 30.2 bits (69), Expect = 0.18
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNLKR 94
K + C++CGK F +L +
Sbjct: 1 GSSGSSGTGEKPYSCNVCGKAFVLSAHLNQ 30
Score = 28.6 bits (65), Expect = 0.70
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNGPK-YTCE 185
+ C VC K S L +HL +H
Sbjct: 13 YSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 28.6 bits (65), Expect = 0.70
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQP 691
C +C K F L +H+R+ HTQ
Sbjct: 15 CNVCGKAFVLSAHLNQHLRV-HTQETL 40
Score = 27.9 bits (63), Expect = 1.6
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
G + C C K F + +L QH++ T
Sbjct: 1 GSSGSSGTGEKPYSCNVCGKAFVLSAHLNQHLRVHT 36
Score = 27.5 bits (62), Expect = 1.9
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C +C K+F L +H R+ H
Sbjct: 15 CNVCGKAFVLSAHLNQHLRV-HTQETL 40
Score = 27.1 bits (61), Expect = 2.8
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHTRRNPS 594
C +C K F L +H+++ HT+ S
Sbjct: 15 CNVCGKAFVLSAHLNQHLRV-HTQETLS 41
Score = 26.3 bits (59), Expect = 5.7
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
C +C K F L +H+R
Sbjct: 14 SCNVCGKAFVLSAHLNQHLR 33
Score = 26.3 bits (59), Expect = 5.7
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
C CGK F+ ++L H
Sbjct: 14 SCNVCGKAFVLSAHLNQH 31
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 34.0 bits (79), Expect = 0.008
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
+ H C CGK F Q +N +H
Sbjct: 1 GSSGSSGHGERGHRCSDCGKFFLQASNFIQH 31
Score = 30.6 bits (70), Expect = 0.16
Identities = 8/28 (28%), Positives = 10/28 (35%), Gaps = 4/28 (14%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNL 92
+ H C CGK F Q +N
Sbjct: 1 GSSGSSGHGERGHRCSDCGKFFLQASNF 28
Score = 30.6 bits (70), Expect = 0.16
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
+G + + C C K F + H+++H
Sbjct: 2 SSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 28.7 bits (65), Expect = 0.79
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 714 RCELCDKSFTRKDSLKKHNRIFHGGADP 741
RC C K F + + +H RI H G P
Sbjct: 14 RCSDCGKFFLQASNFIQHRRI-HTGEKP 40
Score = 28.7 bits (65), Expect = 0.83
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHTRRNPSANS 597
C C K F + + +H +I HT PS S
Sbjct: 15 CSDCGKFFLQASNFIQHRRI-HTGEKPSGPS 44
Score = 28.3 bits (64), Expect = 0.88
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
+C CGK FL+ SN H
Sbjct: 14 RCSDCGKFFLQASNFIQH 31
Score = 28.3 bits (64), Expect = 1.0
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
G + +C C K+F + N QH + T
Sbjct: 1 GSSGSSGHGERGHRCSDCGKFFLQASNFIQHRRIHT 36
Score = 27.5 bits (62), Expect = 1.9
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C+ C K F + + +H RI HT
Sbjct: 15 CSDCGKFFLQASNFIQHRRI-HT 36
Score = 26.7 bits (60), Expect = 3.8
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 46 KRFKCEQCDKRFSSNAELNKH 66
+ +C C K F + +H
Sbjct: 11 RGHRCSDCGKFFLQASNFIQH 31
Score = 26.0 bits (58), Expect = 7.4
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 18 HMCELCYKVFESRENLMRHLKIH 40
H C C K F N ++H +IH
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIH 35
Score = 25.6 bits (57), Expect = 8.4
Identities = 8/31 (25%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNGPK-YTC 184
C C K + + +H IH G K
Sbjct: 13 HRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 34.1 bits (79), Expect = 0.008
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K ++C+ CGK F R +L H
Sbjct: 1 GSSGSSGTGEKPYKCEECGKGFICRRDLYTH 31
Score = 31.0 bits (71), Expect = 0.11
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y CE C K F +L H +H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVH 35
Score = 30.2 bits (69), Expect = 0.18
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNLKR 94
K ++C+ CGK F R +L
Sbjct: 1 GSSGSSGTGEKPYKCEECGKGFICRRDLYT 30
Score = 29.0 bits (66), Expect = 0.48
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 714 RCELCDKSFTRKDSLKKHNRIFHGGADP 741
+CE C K F + L H+ + H G P
Sbjct: 14 KCEECGKGFICRRDLYTHHMV-HTGEKP 40
Score = 29.0 bits (66), Expect = 0.59
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
KCE CGK F+ + +L H
Sbjct: 14 KCEECGKGFICRRDLYTH 31
Score = 28.7 bits (65), Expect = 0.74
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 36 HLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
+ K +KCE+C K F +L H +H K
Sbjct: 3 SGSSGTGE--KPYKCEECGKGFICRRDLYTH-HMVHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 1.7
Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K F + L H + HT
Sbjct: 15 CEECGKGFICRRDLYTHHMV-HT 36
Score = 26.3 bits (59), Expect = 4.7
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
CE C K F + L H + HT
Sbjct: 15 CEECGKGFICRRDLYTHHMV-HT 36
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 34.1 bits (79), Expect = 0.008
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 115 SSAIHQRLKLHECDLCGKNFSQRNNLKRH 143
S + K H CD CGKNF + L+ H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH 31
Score = 31.0 bits (71), Expect = 0.11
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
+G K +TC+ C K F + L IH+++H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVH 35
Score = 30.6 bits (70), Expect = 0.14
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 67 SSAIHQRLKLHECDLCGKNFSQRNNLK 93
S + K H CD CGKNF + L+
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALR 29
Score = 27.9 bits (63), Expect = 1.3
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 3/32 (9%)
Query: 200 HKKLHEDESVANQLKCEFCGKVFLKKSNLKAH 231
E C+ CGK F S L+ H
Sbjct: 3 SGSSGSGE---KSHTCDECGKNFCYISALRIH 31
Score = 27.6 bits (62), Expect = 1.7
Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGG 738
C+ C K+F +L+ H R+ H G
Sbjct: 15 CDECGKNFCYISALRIHQRV-HMG 37
Score = 27.2 bits (61), Expect = 2.4
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 7/38 (18%)
Query: 36 HLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQR 73
E K C++C K F + L IHQR
Sbjct: 3 SGSSGS-GE-KSHTCDECGKNFCYISALR-----IHQR 33
Score = 26.8 bits (60), Expect = 3.4
Identities = 8/23 (34%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K F +L+ H R+ H
Sbjct: 15 CDECGKNFCYISALRIHQRV-HM 36
Score = 26.0 bits (58), Expect = 5.9
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHTRRNPSANS 597
C+ C K F +LR H ++ H S S
Sbjct: 15 CDECGKNFCYISALRIHQRV-HMGEKCSGPS 44
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.008
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K ++C+ CGK F+Q ++L H
Sbjct: 1 GSSGSSGSGEKPYKCNECGKVFTQNSHLTNH 31
Score = 31.3 bits (72), Expect = 0.076
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
+G K Y C C K FT+ L H ++H
Sbjct: 2 SSGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 30.5 bits (70), Expect = 0.15
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKH 66
+ K +KC +C K F+ N+ L H
Sbjct: 2 SSGSSGSGE--KPYKCNECGKVFTQNSHLTNH 31
Score = 30.5 bits (70), Expect = 0.18
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNLKR 94
K ++C+ CGK F+Q ++L
Sbjct: 1 GSSGSSGSGEKPYKCNECGKVFTQNSHLTN 30
Score = 27.5 bits (62), Expect = 1.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
KC CGKVF + S+L H
Sbjct: 14 KCNECGKVFTQNSHLTNH 31
Score = 27.5 bits (62), Expect = 1.9
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K FT+ L H RI H G P
Sbjct: 15 CNECGKVFTQNSHLTNHWRI-HTGEKP 40
Score = 27.1 bits (61), Expect = 2.4
Identities = 11/23 (47%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K FT+ L H RI HT
Sbjct: 15 CNECGKVFTQNSHLTNHWRI-HT 36
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.008
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K ++C+ CGK F+Q ++L RH
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLARH 31
Score = 30.2 bits (69), Expect = 0.19
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNLKR 94
K ++C+ CGK F+Q ++L R
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLAR 30
Score = 29.8 bits (68), Expect = 0.27
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 36 HLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
+ K +KC +C K F+ N+ L +H IH K
Sbjct: 3 SGSSGTGE--KPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.54
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C C K FT+ L H+ +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 27.1 bits (61), Expect = 2.9
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K FT+ L +H I H G P
Sbjct: 15 CNECGKVFTQNSHLARHRGI-HTGEKP 40
Score = 27.1 bits (61), Expect = 3.1
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K FT+ L +H I HT
Sbjct: 15 CNECGKVFTQNSHLARHRGI-HT 36
Score = 26.7 bits (60), Expect = 4.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
KC CGKVF + S+L H
Sbjct: 14 KCNECGKVFTQNSHLARH 31
Score = 25.9 bits (58), Expect = 6.7
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
G + +C C K F++N +L +H T
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHT 36
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.009
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K ++C+ CGK F+Q ++L RH
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLARH 31
Score = 30.2 bits (69), Expect = 0.20
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNLKR 94
K ++C+ CGK F+Q ++L R
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLAR 30
Score = 29.0 bits (66), Expect = 0.46
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 36 HLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
+ K +KC +C K F+ N+ L +H +H K
Sbjct: 3 SGSSGTGE--KPYKCNECGKVFTQNSHLARHRR-VHTGGKPSGP 43
Score = 28.6 bits (65), Expect = 0.69
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C C K FT+ L H+++H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 27.5 bits (62), Expect = 2.2
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQP 691
C C K FT+ L +H R+ HT +P
Sbjct: 15 CNECGKVFTQNSHLARHRRV-HTGGKP 40
Score = 27.1 bits (61), Expect = 2.6
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K FT+ L +H R+ H G P
Sbjct: 15 CNECGKVFTQNSHLARHRRV-HTGGKP 40
Score = 26.7 bits (60), Expect = 3.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
KC CGKVF + S+L H
Sbjct: 14 KCNECGKVFTQNSHLARH 31
Score = 26.3 bits (59), Expect = 5.0
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
G + +C C K F++N +L +H + T
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHT 36
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.009
Identities = 8/29 (27%), Positives = 10/29 (34%), Gaps = 4/29 (13%)
Query: 119 HQRL----KLHECDLCGKNFSQRNNLKRH 143
C CGK F+ + NL H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIH 31
Score = 30.9 bits (71), Expect = 0.11
Identities = 7/26 (26%), Positives = 9/26 (34%), Gaps = 4/26 (15%)
Query: 71 HQRL----KLHECDLCGKNFSQRNNL 92
C CGK F+ + NL
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNL 28
Score = 30.2 bits (69), Expect = 0.22
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G + C C K FT L IH+K+H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIH 35
Score = 28.6 bits (65), Expect = 0.76
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K FT K +L H +I H G P
Sbjct: 15 CSECGKVFTHKTNLIIHQKI-HTGERP 40
Score = 28.2 bits (64), Expect = 0.94
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
C CGKVF K+NL H
Sbjct: 14 ICSECGKVFTHKTNLIIH 31
Score = 28.2 bits (64), Expect = 0.95
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C+ C K FT K +L H +I HT
Sbjct: 15 CSECGKVFTHKTNLIIHQKI-HT 36
Score = 27.5 bits (62), Expect = 1.9
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 7/38 (18%)
Query: 36 HLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQR 73
+ F C +C K F+ L IHQ+
Sbjct: 3 SGSSGTGE--NPFICSECGKVFTHKTNL-----IIHQK 33
Score = 26.7 bits (60), Expect = 3.7
Identities = 11/36 (30%), Positives = 13/36 (36%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
G +N C C K F+ NL H K T
Sbjct: 1 GSSGSSGTGENPFICSECGKVFTHKTNLIIHQKIHT 36
Score = 26.3 bits (59), Expect = 4.3
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHTRRNPSA-NSG 598
C C K FT K +L H KI HT PS +SG
Sbjct: 15 CSECGKVFTHKTNLIIHQKI-HTGERPSGPSSG 46
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.009
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 119 HQRL----KLHECDLCGKNFSQRNNLKRH 143
+ +EC CGK F Q++ L H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMH 31
Score = 30.2 bits (69), Expect = 0.19
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 4/26 (15%)
Query: 71 HQRL----KLHECDLCGKNFSQRNNL 92
+ +EC CGK F Q++ L
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTL 28
Score = 29.0 bits (66), Expect = 0.53
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G + Y C C K F + L++H+++H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 28.6 bits (65), Expect = 0.75
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C+ C K F +K +L H RI H
Sbjct: 15 CSECGKAFIQKSTLSMHQRI-HR 36
Score = 28.3 bits (64), Expect = 0.89
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K+F +K +L H RI H G P
Sbjct: 15 CSECGKAFIQKSTLSMHQRI-HRGEKP 40
Score = 27.1 bits (61), Expect = 2.5
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
+C CGK F++KS L H
Sbjct: 14 ECSECGKAFIQKSTLSMH 31
Score = 26.7 bits (60), Expect = 3.1
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 36 HLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
+ + ++C +C K F + L+ H IH+ K
Sbjct: 3 SGSSGTGE--RHYECSECGKAFIQKSTLSMHQR-IHRGEKPSGP 43
Score = 25.9 bits (58), Expect = 6.7
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C C K F +K +L H +I H
Sbjct: 15 CSECGKAFIQKSTLSMHQRI-HR 36
Score = 25.9 bits (58), Expect = 7.5
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
G + +C C K F + L H +
Sbjct: 1 GSSGSSGTGERHYECSECGKAFIQKSTLSMHQRIHR 36
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.009
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K +C+ CGK F+Q + L H
Sbjct: 1 GSSGSSGSGEKPFKCEECGKRFTQNSQLHSH 31
Score = 32.5 bits (75), Expect = 0.027
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
+G K + CE C K FT+ +L+ H+++H
Sbjct: 2 SSGSSGSGEKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 32.5 bits (75), Expect = 0.035
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKH 66
+ K FKCE+C KRF+ N++L+ H
Sbjct: 2 SSGSSGSGE--KPFKCEECGKRFTQNSQLHSH 31
Score = 30.2 bits (69), Expect = 0.21
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 4/30 (13%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNLKR 94
K +C+ CGK F+Q + L
Sbjct: 1 GSSGSSGSGEKPFKCEECGKRFTQNSQLHS 30
Score = 29.4 bits (67), Expect = 0.44
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 714 RCELCDKSFTRKDSLKKHNRIFHGGADP 741
+CE C K FT+ L H R+ H G P
Sbjct: 14 KCEECGKRFTQNSQLHSHQRV-HTGEKP 40
Score = 28.6 bits (65), Expect = 0.77
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
KCE CGK F + S L +H
Sbjct: 14 KCEECGKRFTQNSQLHSH 31
Score = 28.3 bits (64), Expect = 0.89
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K FT+ L H R+ HT
Sbjct: 15 CEECGKRFTQNSQLHSHQRV-HT 36
Score = 26.3 bits (59), Expect = 5.0
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
CE C K FT+ L H ++ HT
Sbjct: 15 CEECGKRFTQNSQLHSHQRV-HT 36
Score = 25.9 bits (58), Expect = 6.9
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
+C C K FT+ L H R
Sbjct: 14 KCEECGKRFTQNSQLHSHQR 33
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.009
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K ++C CGK F++++ L H
Sbjct: 1 GSSGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31
Score = 33.3 bits (77), Expect = 0.016
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C C K FTR L+IH++ H
Sbjct: 2 SSGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSH 35
Score = 30.9 bits (71), Expect = 0.12
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C+ C K FTRK L H + HT
Sbjct: 15 CSDCGKAFTRKSGLHIHQQS-HT 36
Score = 30.6 bits (70), Expect = 0.14
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNL 92
K ++C CGK F++++ L
Sbjct: 1 GSSGSSGTGEKPYKCSDCGKAFTRKSGL 28
Score = 30.2 bits (69), Expect = 0.19
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K+FTRK L H + H G
Sbjct: 15 CSDCGKAFTRKSGLHIHQQS-HTGERH 40
Score = 29.0 bits (66), Expect = 0.61
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
KC CGK F +KS L H
Sbjct: 14 KCSDCGKAFTRKSGLHIH 31
Score = 29.0 bits (66), Expect = 0.63
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 11/49 (22%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRL----KLHEC 79
+ K +KC C K F+ + L+ IHQ+ +
Sbjct: 2 SSGSSGTGE--KPYKCSDCGKAFTRKSGLH-----IHQQSHTGERHSGP 43
Score = 28.2 bits (64), Expect = 0.92
Identities = 11/23 (47%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C C K FTRK L H + HT
Sbjct: 15 CSDCGKAFTRKSGLHIHQQS-HT 36
Score = 27.1 bits (61), Expect = 2.4
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 508 CRICSKTFTRKDSLRKHMR 526
C C K FTRK L H +
Sbjct: 15 CSDCGKAFTRKSGLHIHQQ 33
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.010
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 119 HQRL----KLHECDLCGKNFSQRNNLKRH 143
K ++C+ CGK F+Q ++L H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANH 31
Score = 31.0 bits (71), Expect = 0.12
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C C K FT+ L H+++H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 30.6 bits (70), Expect = 0.13
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 7/39 (17%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQR 73
+ K +KC +C K F+ N+ L A HQR
Sbjct: 2 SSGSSGTGE--KPYKCNECGKVFTQNSHL-----ANHQR 33
Score = 30.2 bits (69), Expect = 0.22
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 71 HQRL----KLHECDLCGKNFSQRNNLKR 94
K ++C+ CGK F+Q ++L
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLAN 30
Score = 27.9 bits (63), Expect = 1.6
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQP 691
C C K FT+ L H RI HT +P
Sbjct: 15 CNECGKVFTQNSHLANHQRI-HTGVKP 40
Score = 27.5 bits (62), Expect = 1.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
KC CGKVF + S+L H
Sbjct: 14 KCNECGKVFTQNSHLANH 31
Score = 27.5 bits (62), Expect = 1.9
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQH 322
G + +C C K F++N +L H
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFTQNSHLANH 31
Score = 27.5 bits (62), Expect = 2.1
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K FT+ L H RI H G P
Sbjct: 15 CNECGKVFTQNSHLANHQRI-HTGVKP 40
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 34.1 bits (79), Expect = 0.010
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K + C CGK+F + L +H
Sbjct: 1 GSSGSSGTGEKPYNCKECGKSFRWASCLLKH 31
Score = 31.4 bits (72), Expect = 0.074
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C+ C K F L H+++H
Sbjct: 2 SSGSSGTGEKPYNCKECGKSFRWASCLLKHQRVH 35
Score = 30.6 bits (70), Expect = 0.15
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
+ K + C++C K F + L KH +H K
Sbjct: 2 SSGSSGTGE--KPYNCKECGKSFRWASCLLKHQR-VHSGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.22
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 4/30 (13%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNLKR 94
K + C CGK+F + L +
Sbjct: 1 GSSGSSGTGEKPYNCKECGKSFRWASCLLK 30
Score = 28.7 bits (65), Expect = 0.73
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C+ C KSF L KH R+ H G P
Sbjct: 15 CKECGKSFRWASCLLKHQRV-HSGEKP 40
Score = 28.3 bits (64), Expect = 1.1
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K+F L KH R+ H+
Sbjct: 15 CKECGKSFRWASCLLKHQRV-HS 36
Score = 26.4 bits (59), Expect = 4.2
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
C+ CGK F S L H
Sbjct: 14 NCKECGKSFRWASCLLKH 31
Score = 26.4 bits (59), Expect = 5.3
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C+ C K+F L KH ++ H+
Sbjct: 15 CKECGKSFRWASCLLKHQRV-HS 36
Score = 25.6 bits (57), Expect = 9.1
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
C+ C K+F L KH R
Sbjct: 14 NCKECGKSFRWASCLLKHQR 33
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 34.0 bits (79), Expect = 0.010
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
+ +EC CGK F++++ L H
Sbjct: 1 GSSGSSGTGERHYECSECGKAFARKSTLIMH 31
Score = 30.9 bits (71), Expect = 0.11
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNL 92
+ +EC CGK F++++ L
Sbjct: 1 GSSGSSGTGERHYECSECGKAFARKSTL 28
Score = 30.9 bits (71), Expect = 0.12
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G + Y C C K F R L +H+++H
Sbjct: 2 SSGSSGTGERHYECSECGKAFARKSTLIMHQRIH 35
Score = 29.4 bits (67), Expect = 0.45
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C+ C K F RK +L H RI HT
Sbjct: 15 CSECGKAFARKSTLIMHQRI-HT 36
Score = 29.0 bits (66), Expect = 0.57
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K+F RK +L H RI H G P
Sbjct: 15 CSECGKAFARKSTLIMHQRI-HTGEKP 40
Score = 27.5 bits (62), Expect = 2.0
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C C K F RK +L H +I HT
Sbjct: 15 CSECGKAFARKSTLIMHQRI-HT 36
Score = 27.1 bits (61), Expect = 2.3
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
+C C K F RK +L H R
Sbjct: 14 ECSECGKAFARKSTLIMHQR 33
Score = 27.1 bits (61), Expect = 2.8
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
G + +C C K F+R L H + T
Sbjct: 1 GSSGSSGTGERHYECSECGKAFARKSTLIMHQRIHT 36
Score = 27.1 bits (61), Expect = 2.9
Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
+ + ++C +C K F+ + L H IH K
Sbjct: 2 SSGSSGTGE--RHYECSECGKAFARKSTLIMHQR-IHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 4.9
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
+C CGK F +KS L H
Sbjct: 14 ECSECGKAFARKSTLIMH 31
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 33.8 bits (78), Expect = 0.011
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQP 691
C C K+FT++ SL H R +Q+ P
Sbjct: 14 CGQCGKSFTQRGSLAVHQRS-CSQSGP 39
Score = 33.4 bits (77), Expect = 0.012
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 115 SSAIHQRLKLHECDLCGKNFSQRNNLKRH 143
SS + C CGK+F+QR +L H
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVH 30
Score = 32.3 bits (74), Expect = 0.036
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHTRRNPSA 595
C C K+FT++ SL H + ++ PS+
Sbjct: 14 CGQCGKSFTQRGSLAVHQRS-CSQSGPSS 41
Score = 31.5 bits (72), Expect = 0.060
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 714 RCELCDKSFTRKDSLKKHNRIFHGGADP 741
C C KSFT++ SL H R + P
Sbjct: 13 LCGQCGKSFTQRGSLAVHQRS-CSQSGP 39
Score = 30.3 bits (69), Expect = 0.20
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 67 SSAIHQRLKLHECDLCGKNFSQRNNL 92
SS + C CGK+F+QR +L
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSL 27
Score = 30.3 bits (69), Expect = 0.20
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
C C K+FT++ SL H R
Sbjct: 13 LCGQCGKSFTQRGSLAVHQR 32
Score = 29.6 bits (67), Expect = 0.35
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 5/28 (17%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQR 73
+ C QC K F+ L A+HQR
Sbjct: 10 TPYLCGQCGKSFTQRGSL-----AVHQR 32
Score = 29.2 bits (66), Expect = 0.41
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 177 HNGPK-YTCEICAKEFTRVYELNIHKKLHEDE 207
G Y C C K FT+ L +H++
Sbjct: 6 SGGETPYLCGQCGKSFTQRGSLAVHQRSCSQS 37
Score = 27.2 bits (61), Expect = 1.9
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
C CGK F ++ +L H
Sbjct: 13 LCGQCGKSFTQRGSLAVH 30
Score = 26.1 bits (58), Expect = 4.9
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 305 QCRFCNKYFSRNYNLKQHMKTCT 327
C C K F++ +L H ++C+
Sbjct: 13 LCGQCGKSFTQRGSLAVHQRSCS 35
Score = 25.7 bits (57), Expect = 8.0
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 448 QCHICLKTFAKKDSLKKHMKVFHT 471
C C K+F ++ SL H + +
Sbjct: 13 LCGQCGKSFTQRGSLAVHQRS-CS 35
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 33.7 bits (78), Expect = 0.011
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDES 208
K Y C C K FTR++ L H+K+H +S
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKS 39
Score = 32.6 bits (75), Expect = 0.030
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K + C+ CGK F++ +L RH
Sbjct: 1 GSSGSSGTDSKSYNCNECGKAFTRIFHLTRH 31
Score = 31.4 bits (72), Expect = 0.081
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHTRRNPSAN 596
C C K FTR L +H KI HTR++ ++
Sbjct: 15 CNECGKAFTRIFHLTRHQKI-HTRKSGPSS 43
Score = 29.9 bits (68), Expect = 0.25
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
G D C C K F+R ++L +H K T
Sbjct: 1 GSSGSSGTDSKSYNCNECGKAFTRIFHLTRHQKIHT 36
Score = 29.1 bits (66), Expect = 0.56
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 36 HLKIHDDKESKRFKCEQCDKRFSSNAELNKH 66
D SK + C +C K F+ L +H
Sbjct: 3 SGSSGTD--SKSYNCNECGKAFTRIFHLTRH 31
Score = 28.7 bits (65), Expect = 0.64
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K FTR L +H +I HT
Sbjct: 15 CNECGKAFTRIFHLTRHQKI-HT 36
Score = 28.7 bits (65), Expect = 0.69
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNLKR 94
K + C+ CGK F++ +L R
Sbjct: 1 GSSGSSGTDSKSYNCNECGKAFTRIFHLTR 30
Score = 27.9 bits (63), Expect = 1.2
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 714 RCELCDKSFTRKDSLKKHNRIFHGG 738
C C K+FTR L +H +I H
Sbjct: 14 NCNECGKAFTRIFHLTRHQKI-HTR 37
Score = 26.4 bits (59), Expect = 5.3
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 20 CELCYKVFESRENLMRHLKIH 40
C C K F +L RH KIH
Sbjct: 15 CNECGKAFTRIFHLTRHQKIH 35
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.7 bits (78), Expect = 0.011
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K ++C CGK+F+ ++ L+ H
Sbjct: 1 GSSGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
Score = 31.4 bits (72), Expect = 0.071
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C C K FT L IH+K H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCH 35
Score = 30.6 bits (70), Expect = 0.13
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C KSFT K L+ H + H G
Sbjct: 15 CSDCGKSFTWKSRLRIHQKC-HTGERH 40
Score = 30.6 bits (70), Expect = 0.17
Identities = 10/23 (43%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C+ C K+FT K L+ H + HT
Sbjct: 15 CSDCGKSFTWKSRLRIHQKC-HT 36
Score = 29.8 bits (68), Expect = 0.25
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNLKR 94
K ++C CGK+F+ ++ L+
Sbjct: 1 GSSGSSGTGEKPYKCSDCGKSFTWKSRLRI 30
Score = 29.4 bits (67), Expect = 0.43
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
KC CGK F KS L+ H
Sbjct: 14 KCSDCGKSFTWKSRLRIH 31
Score = 28.7 bits (65), Expect = 0.78
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 11/48 (22%)
Query: 36 HLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRL----KLHEC 79
+ K +KC C K F+ + L IHQ+ +
Sbjct: 3 SGSSGTGE--KPYKCSDCGKSFTWKSRLR-----IHQKCHTGERHSGP 43
Score = 27.9 bits (63), Expect = 1.4
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C C K+FT K LR H K HT
Sbjct: 15 CSDCGKSFTWKSRLRIHQKC-HT 36
Score = 27.1 bits (61), Expect = 2.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
+C C K+FT K LR H +
Sbjct: 14 KCSDCGKSFTWKSRLRIHQK 33
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 33.7 bits (78), Expect = 0.011
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHTRRNPS 594
C+ C F+ SL KH++ H R +PS
Sbjct: 15 CKECGMNFSWSCSLFKHLRS-HERTDPS 41
Score = 33.7 bits (78), Expect = 0.013
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
QC+ C F+ SL KH+R
Sbjct: 14 QCKECGMNFSWSCSLFKHLR 33
Score = 32.6 bits (75), Expect = 0.028
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQP 691
C C F+ SL KH+R H + P
Sbjct: 15 CKECGMNFSWSCSLFKHLRS-HERTDP 40
Score = 32.6 bits (75), Expect = 0.033
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 123 KLHECDLCGKNFSQRNNLKRHL 144
K +C CG NFS +L +HL
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHL 32
Score = 31.4 bits (72), Expect = 0.083
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 714 RCELCDKSFTRKDSLKKHNRIFHGGADP 741
+C+ C +F+ SL KH R H DP
Sbjct: 14 QCKECGMNFSWSCSLFKHLRS-HERTDP 40
Score = 29.5 bits (67), Expect = 0.39
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDE 207
G K + C+ C F+ L H + HE
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERT 38
Score = 29.1 bits (66), Expect = 0.56
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 777 CKICNRTFTRNYNLKKHMKT 796
CK C F+ + +L KH+++
Sbjct: 15 CKECGMNFSWSCSLFKHLRS 34
Score = 28.7 bits (65), Expect = 0.65
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECD 80
K F+C++C FS + L KH H+R
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLR-SHERTDPSGPS 44
Score = 27.9 bits (63), Expect = 1.3
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 75 KLHECDLCGKNFSQRNNLKR 94
K +C CG NFS +L +
Sbjct: 11 KPFQCKECGMNFSWSCSLFK 30
Score = 27.9 bits (63), Expect = 1.4
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKT 325
G + QC+ C FS + +L +H+++
Sbjct: 1 GSSGSSGTGEKPFQCKECGMNFSWSCSLFKHLRS 34
Score = 27.2 bits (61), Expect = 2.2
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNGPK 181
F+C C + S SL +HL H
Sbjct: 13 FQCKECGMNFSWSCSLFKHLRSHERTD 39
Score = 26.8 bits (60), Expect = 3.4
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 448 QCHICLKTFAKKDSLKKHMKVFHT 471
QC C F+ SL KH++ H
Sbjct: 14 QCKECGMNFSWSCSLFKHLRS-HE 36
Score = 26.8 bits (60), Expect = 4.0
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
+C+ CG F +L H
Sbjct: 14 QCKECGMNFSWSCSLFKH 31
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 0.011
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 119 HQRL----KLHECDLCGKNFSQRNNLKRH 143
K ++C+ CGK FSQ + L RH
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARH 31
Score = 30.6 bits (70), Expect = 0.15
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
+ K +KC +C K FS ++L +H IH K
Sbjct: 2 SSGSSGTGE--KPYKCNECGKAFSQTSKLARHQR-IHTGEKPSGP 43
Score = 30.2 bits (69), Expect = 0.19
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C C K F++ +L H+++H
Sbjct: 2 SSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 29.8 bits (68), Expect = 0.25
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 4/28 (14%)
Query: 71 HQRL----KLHECDLCGKNFSQRNNLKR 94
K ++C+ CGK FSQ + L R
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLAR 30
Score = 27.5 bits (62), Expect = 2.1
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
KC CGK F + S L H
Sbjct: 14 KCNECGKAFSQTSKLARH 31
Score = 27.5 bits (62), Expect = 2.2
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K+F++ L +H RI H G P
Sbjct: 15 CNECGKAFSQTSKLARHQRI-HTGEKP 40
Score = 27.1 bits (61), Expect = 2.6
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K F++ L +H RI HT
Sbjct: 15 CNECGKAFSQTSKLARHQRI-HT 36
Score = 26.7 bits (60), Expect = 3.8
Identities = 9/36 (25%), Positives = 14/36 (38%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
G + +C C K FS+ L +H + T
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHT 36
Score = 25.6 bits (57), Expect = 10.0
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C C K F++ L +H +I HT
Sbjct: 15 CNECGKAFSQTSKLARHQRI-HT 36
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 33.6 bits (78), Expect = 0.012
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K + C+ CGK F ++ L H
Sbjct: 1 GSSGSSGTGMKPYVCNECGKAFRSKSYLIIH 31
Score = 30.1 bits (69), Expect = 0.21
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 4/28 (14%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNL 92
K + C+ CGK F ++ L
Sbjct: 1 GSSGSSGTGMKPYVCNECGKAFRSKSYL 28
Score = 29.8 bits (68), Expect = 0.24
Identities = 11/34 (32%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C C K F L IH + H
Sbjct: 2 SSGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTH 35
Score = 27.8 bits (63), Expect = 1.2
Identities = 10/23 (43%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K F K L H R HT
Sbjct: 15 CNECGKAFRSKSYLIIHTRT-HT 36
Score = 27.4 bits (62), Expect = 1.9
Identities = 10/49 (20%), Positives = 13/49 (26%), Gaps = 11/49 (22%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRL----KLHEC 79
K + C +C K F S + L IH R
Sbjct: 2 SSGSSG--TGMKPYVCNECGKAFRSKSYL-----IIHTRTHTGESGPSS 43
Score = 26.7 bits (60), Expect = 4.0
Identities = 9/18 (50%), Positives = 9/18 (50%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
C CGK F KS L H
Sbjct: 14 VCNECGKAFRSKSYLIIH 31
Score = 26.7 bits (60), Expect = 4.0
Identities = 10/27 (37%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K+F K L H R H G
Sbjct: 15 CNECGKAFRSKSYLIIHTRT-HTGESG 40
Score = 25.9 bits (58), Expect = 6.3
Identities = 8/20 (40%), Positives = 8/20 (40%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
C C K F K L H R
Sbjct: 14 VCNECGKAFRSKSYLIIHTR 33
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 0.013
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K + C+ CGK FS ++L H
Sbjct: 1 GSSGSSGTGVKPYMCNECGKAFSVYSSLTTH 31
Score = 31.3 bits (72), Expect = 0.084
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C C K F+ L H+ +H
Sbjct: 2 SSGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 30.2 bits (69), Expect = 0.24
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNL 92
K + C+ CGK FS ++L
Sbjct: 1 GSSGSSGTGVKPYMCNECGKAFSVYSSL 28
Score = 29.8 bits (68), Expect = 0.29
Identities = 8/32 (25%), Positives = 11/32 (34%), Gaps = 2/32 (6%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKH 66
K + C +C K FS + L H
Sbjct: 2 SSGSSGTGV--KPYMCNECGKAFSVYSSLTTH 31
Score = 27.9 bits (63), Expect = 1.5
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNGPK-YTCE 185
+ C C K + SL H +IH G K
Sbjct: 13 YMCNECGKAFSVYSSLTTHQVIHTGEKPSGPS 44
Score = 27.5 bits (62), Expect = 1.7
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
C CGK F S+L H
Sbjct: 14 MCNECGKAFSVYSSLTTH 31
Score = 27.1 bits (61), Expect = 2.4
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K+F+ SL H I H G P
Sbjct: 15 CNECGKAFSVYSSLTTHQVI-HTGEKP 40
Score = 26.7 bits (60), Expect = 4.0
Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K F+ SL H I HT
Sbjct: 15 CNECGKAFSVYSSLTTHQVI-HT 36
Score = 25.6 bits (57), Expect = 8.7
Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C C K F+ SL H I HT
Sbjct: 15 CNECGKAFSVYSSLTTHQVI-HT 36
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 33.7 bits (78), Expect = 0.013
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
+ +EC CGK F +++L H
Sbjct: 1 GSSGSSGTGQRPYECIECGKAFKTKSSLICH 31
Score = 30.6 bits (70), Expect = 0.17
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNL 92
+ +EC CGK F +++L
Sbjct: 1 GSSGSSGTGQRPYECIECGKAFKTKSSL 28
Score = 29.8 bits (68), Expect = 0.25
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G + Y C C K F L H++ H
Sbjct: 2 SSGSSGTGQRPYECIECGKAFKTKSSLICHRRSH 35
Score = 27.5 bits (62), Expect = 2.1
Identities = 11/23 (47%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K F K SL H R HT
Sbjct: 15 CIECGKAFKTKSSLICHRRS-HT 36
Score = 27.1 bits (61), Expect = 2.6
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K+F K SL H R H G P
Sbjct: 15 CIECGKAFKTKSSLICHRRS-HTGEKP 40
Score = 26.3 bits (59), Expect = 5.0
Identities = 6/32 (18%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKH 66
+ + ++C +C K F + + L H
Sbjct: 2 SSGSSGTGQ--RPYECIECGKAFKTKSSLICH 31
Score = 26.0 bits (58), Expect = 7.2
Identities = 11/31 (35%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNGPK-YTC 184
+EC C K T SL H H G K
Sbjct: 13 YECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 25.6 bits (57), Expect = 9.6
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
+C CGK F KS+L H
Sbjct: 14 ECIECGKAFKTKSSLICH 31
Score = 25.6 bits (57), Expect = 9.9
Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHTRRNP 593
C C K F K SL H + HT P
Sbjct: 15 CIECGKAFKTKSSLICHRRS-HTGEKP 40
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.6 bits (78), Expect = 0.014
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 119 HQRL----KLHECDLCGKNFSQRNNLKRH 143
K ++C+ CGK F+Q ++L RH
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRH 31
Score = 32.5 bits (75), Expect = 0.036
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
+ K +KC +C K F+ N+ L +H IH K
Sbjct: 2 SSGSSGTGE--KPYKCNECGKVFTQNSHLVRH-RGIHTGEKPSGP 43
Score = 31.3 bits (72), Expect = 0.091
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C C K FT+ L H+ +H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 29.8 bits (68), Expect = 0.33
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 4/28 (14%)
Query: 71 HQRL----KLHECDLCGKNFSQRNNLKR 94
K ++C+ CGK F+Q ++L R
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVR 30
Score = 27.1 bits (61), Expect = 2.7
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K FT+ L +H I H G P
Sbjct: 15 CNECGKVFTQNSHLVRHRGI-HTGEKP 40
Score = 27.1 bits (61), Expect = 2.8
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K FT+ L +H I HT
Sbjct: 15 CNECGKVFTQNSHLVRHRGI-HT 36
Score = 26.7 bits (60), Expect = 3.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
KC CGKVF + S+L H
Sbjct: 14 KCNECGKVFTQNSHLVRH 31
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.015
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 119 HQRL----KLHECDLCGKNFSQRNNLKRH 143
K + C+ CGK F + L+ H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEH 31
Score = 32.5 bits (75), Expect = 0.032
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y CE C K F +L H+++H
Sbjct: 2 SSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 31.0 bits (71), Expect = 0.11
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKH 66
+ K + CE+C K F +++L +H
Sbjct: 2 SSGSSGTGE--KPYNCEECGKAFIHDSQLQEH 31
Score = 29.4 bits (67), Expect = 0.34
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 4/28 (14%)
Query: 71 HQRL----KLHECDLCGKNFSQRNNLKR 94
K + C+ CGK F + L+
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQE 30
Score = 28.3 bits (64), Expect = 0.88
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
CE C K+F L++H RI H G P
Sbjct: 15 CEECGKAFIHDSQLQEHQRI-HTGEKP 40
Score = 28.3 bits (64), Expect = 1.2
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
CE CGK F+ S L+ H
Sbjct: 14 NCEECGKAFIHDSQLQEH 31
Score = 27.5 bits (62), Expect = 1.9
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K F L++H RI HT
Sbjct: 15 CEECGKAFIHDSQLQEHQRI-HT 36
Score = 27.1 bits (61), Expect = 3.0
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
G + C C K F + L++H + T
Sbjct: 1 GSSGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHT 36
Score = 26.7 bits (60), Expect = 3.1
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHTRRNPSA-NSG 598
CE C K F L++H +I HT PS +SG
Sbjct: 15 CEECGKAFIHDSQLQEHQRI-HTGEKPSGPSSG 46
Score = 26.7 bits (60), Expect = 3.3
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 1/32 (3%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNGPK-YTCE 185
+ C C K L+ H IH G K
Sbjct: 13 YNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 33.3 bits (77), Expect = 0.015
Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K +C+ CGK F + H
Sbjct: 1 GSSGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
Score = 29.8 bits (68), Expect = 0.29
Identities = 6/28 (21%), Positives = 9/28 (32%), Gaps = 4/28 (14%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNL 92
K +C+ CGK F +
Sbjct: 1 GSSGSSGSGEKPFKCEECGKGFYTNSQC 28
Score = 29.4 bits (67), Expect = 0.33
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHECDLCG 83
K FKCE+C K F +N++ H H K G
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQR-SHSGEKPSGPS-SG 46
Score = 28.7 bits (65), Expect = 0.75
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
+G K + CE C K F + H++ H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSH 35
Score = 28.7 bits (65), Expect = 0.81
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
KCE CGK F S +H
Sbjct: 14 KCEECGKGFYTNSQCYSH 31
Score = 27.9 bits (63), Expect = 1.2
Identities = 10/28 (35%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 714 RCELCDKSFTRKDSLKKHNRIFHGGADP 741
+CE C K F H R H G P
Sbjct: 14 KCEECGKGFYTNSQCYSHQRS-HSGEKP 40
Score = 27.1 bits (61), Expect = 2.5
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNGPK-YTCE 185
F+C C K T+ H H+G K
Sbjct: 13 FKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS 44
Score = 26.7 bits (60), Expect = 3.5
Identities = 8/27 (29%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQP 691
C C K F H R H+ +P
Sbjct: 15 CEECGKGFYTNSQCYSHQRS-HSGEKP 40
Score = 25.6 bits (57), Expect = 8.1
Identities = 7/36 (19%), Positives = 12/36 (33%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
G + +C C K F N H ++ +
Sbjct: 1 GSSGSSGSGEKPFKCEECGKGFYTNSQCYSHQRSHS 36
Score = 25.6 bits (57), Expect = 9.6
Identities = 6/20 (30%), Positives = 7/20 (35%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
+C C K F H R
Sbjct: 14 KCEECGKGFYTNSQCYSHQR 33
Score = 25.6 bits (57), Expect = 9.6
Identities = 7/23 (30%), Positives = 9/23 (39%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
CE C K F H + H+
Sbjct: 15 CEECGKGFYTNSQCYSHQRS-HS 36
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 33.3 bits (77), Expect = 0.015
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K ++C+ CGK FS+ + L +H
Sbjct: 1 GSSGSSGTGEKRYKCNECGKVFSRNSQLSQH 31
Score = 31.7 bits (73), Expect = 0.053
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C C K F+R +L+ H+K+H
Sbjct: 2 SSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIH 35
Score = 31.0 bits (71), Expect = 0.12
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
+ KR+KC +C K FS N++L++H IH K
Sbjct: 2 SSGSSGTGE--KRYKCNECGKVFSRNSQLSQHQK-IHTGEKPSGP 43
Score = 29.8 bits (68), Expect = 0.33
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNL 92
K ++C+ CGK FS+ + L
Sbjct: 1 GSSGSSGTGEKRYKCNECGKVFSRNSQL 28
Score = 27.5 bits (62), Expect = 1.9
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
G + + +C C K FSRN L QH K T
Sbjct: 1 GSSGSSGTGEKRYKCNECGKVFSRNSQLSQHQKIHT 36
Score = 27.5 bits (62), Expect = 1.9
Identities = 10/18 (55%), Positives = 11/18 (61%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
KC CGKVF + S L H
Sbjct: 14 KCNECGKVFSRNSQLSQH 31
Score = 27.1 bits (61), Expect = 2.4
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K F+R L +H +I H G P
Sbjct: 15 CNECGKVFSRNSQLSQHQKI-HTGEKP 40
Score = 27.1 bits (61), Expect = 2.6
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQP 691
C C K F+R L +H +I HT +P
Sbjct: 15 CNECGKVFSRNSQLSQHQKI-HTGEKP 40
Score = 26.7 bits (60), Expect = 3.4
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNGPK-YTCE 185
++C C KV + + L +H IH G K
Sbjct: 13 YKCNECGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 25.9 bits (58), Expect = 7.3
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C C K F+R L +H KI HT
Sbjct: 15 CNECGKVFSRNSQLSQHQKI-HT 36
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 33.3 bits (77), Expect = 0.016
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 115 SSAIHQRLKLHECDLCGKNFSQRNNLKRH 143
S + K H+C CG+ F+ +++L +H
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQH 31
Score = 29.4 bits (67), Expect = 0.34
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQP 691
C C + FT K L +H RI HT +P
Sbjct: 15 CHECGRGFTLKSHLNQHQRI-HTGEKP 40
Score = 29.4 bits (67), Expect = 0.39
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 67 SSAIHQRLKLHECDLCGKNFSQRNNLKR 94
S + K H+C CG+ F+ +++L +
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQ 30
Score = 29.4 bits (67), Expect = 0.41
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
+ K + C C + FT LN H+++H
Sbjct: 2 SSGSSGSSTKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 29.1 bits (66), Expect = 0.55
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 46 KRFKCEQCDKRFSSNAELNKH 66
K +C +C + F+ + LN+H
Sbjct: 11 KSHQCHECGRGFTLKSHLNQH 31
Score = 28.3 bits (64), Expect = 0.89
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 714 RCELCDKSFTRKDSLKKHNRIFHGGADP 741
+C C + FT K L +H RI H G P
Sbjct: 14 QCHECGRGFTLKSHLNQHQRI-HTGEKP 40
Score = 28.3 bits (64), Expect = 1.1
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHTRRNPSANS 597
C C + FT K L +H +I HT PS S
Sbjct: 15 CHECGRGFTLKSHLNQHQRI-HTGEKPSGPS 44
Score = 28.3 bits (64), Expect = 1.1
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
+C CG+ F KS+L H
Sbjct: 14 QCHECGRGFTLKSHLNQH 31
Score = 27.1 bits (61), Expect = 2.7
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
QC C + FT K L +H R
Sbjct: 14 QCHECGRGFTLKSHLNQHQR 33
Score = 26.4 bits (59), Expect = 5.1
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 18 HMCELCYKVFESRENLMRHLKIH 40
H C C + F + +L +H +IH
Sbjct: 13 HQCHECGRGFTLKSHLNQHQRIH 35
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.017
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 119 HQRL----KLHECDLCGKNFSQRNNLKRH 143
K HEC CGK+FS + L H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVH 31
Score = 30.2 bits (69), Expect = 0.20
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 4/26 (15%)
Query: 71 HQRL----KLHECDLCGKNFSQRNNL 92
K HEC CGK+FS + L
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQL 28
Score = 29.8 bits (68), Expect = 0.25
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K + C C K F+ +L +H+++H
Sbjct: 2 SSGSSGTGEKPHECRECGKSFSFNSQLIVHQRIH 35
Score = 29.4 bits (67), Expect = 0.41
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 11/49 (22%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRL----KLHEC 79
+ K +C +C K FS N++L +HQR+
Sbjct: 2 SSGSSGTGE--KPHECRECGKSFSFNSQL-----IVHQRIHTGENPSGP 43
Score = 27.5 bits (62), Expect = 1.9
Identities = 10/23 (43%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K+F+ L H RI HT
Sbjct: 15 CRECGKSFSFNSQLIVHQRI-HT 36
Score = 27.5 bits (62), Expect = 2.0
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQH 322
G + +CR C K FS N L H
Sbjct: 1 GSSGSSGTGEKPHECRECGKSFSFNSQLIVH 31
Score = 27.1 bits (61), Expect = 2.3
Identities = 12/27 (44%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C KSF+ L H RI H G +P
Sbjct: 15 CRECGKSFSFNSQLIVHQRI-HTGENP 40
Score = 26.0 bits (58), Expect = 6.8
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
+C CGK F S L H
Sbjct: 14 ECRECGKSFSFNSQLIVH 31
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 33.3 bits (77), Expect = 0.018
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K ++C+ CGK F +NL H
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFRAHSNLTTH 31
Score = 30.2 bits (69), Expect = 0.22
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C C K F L H+ +H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIH 35
Score = 29.8 bits (68), Expect = 0.31
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNL 92
K ++C+ CGK F +NL
Sbjct: 1 GSSGSSGTGEKPYKCNECGKAFRAHSNL 28
Score = 28.6 bits (65), Expect = 0.78
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 36 HLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
+ K +KC +C K F +++ L H IH K
Sbjct: 3 SGSSGTGE--KPYKCNECGKAFRAHSNLTTH-QVIHTGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.81
Identities = 10/18 (55%), Positives = 10/18 (55%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
KC CGK F SNL H
Sbjct: 14 KCNECGKAFRAHSNLTTH 31
Score = 27.1 bits (61), Expect = 2.7
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 714 RCELCDKSFTRKDSLKKHNRIFHGGADP 741
+C C K+F +L H I H G P
Sbjct: 14 KCNECGKAFRAHSNLTTHQVI-HTGEKP 40
Score = 26.3 bits (59), Expect = 4.4
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNGPK-YTCE 185
++C C K +L H +IH G K
Sbjct: 13 YKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 26.3 bits (59), Expect = 4.6
Identities = 9/23 (39%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K F +L H I HT
Sbjct: 15 CNECGKAFRAHSNLTTHQVI-HT 36
Score = 25.6 bits (57), Expect = 9.2
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 20 CELCYKVFESRENLMRHLKIH 40
C C K F + NL H IH
Sbjct: 15 CNECGKAFRAHSNLTTHQVIH 35
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.023
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K ++C +CGK F ++L +H
Sbjct: 1 GSSGSSGTGEKPYKCQVCGKAFRVSSHLVQH 31
Score = 30.2 bits (69), Expect = 0.21
Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
+ K +KC+ C K F ++ L +H S +H +
Sbjct: 2 SSGSSGTGE--KPYKCQVCGKAFRVSSHLVQHHS-VHSGERPSGP 43
Score = 29.8 bits (68), Expect = 0.26
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C++C K F L H +H
Sbjct: 2 SSGSSGTGEKPYKCQVCGKAFRVSSHLVQHHSVH 35
Score = 29.0 bits (66), Expect = 0.52
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNLKR 94
K ++C +CGK F ++L +
Sbjct: 1 GSSGSSGTGEKPYKCQVCGKAFRVSSHLVQ 30
Score = 27.5 bits (62), Expect = 1.9
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNGPK-YTC 184
++C VC K S L +H +H+G +
Sbjct: 13 YKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 27.1 bits (61), Expect = 2.4
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C++C K+F L +H+ + H G P
Sbjct: 15 CQVCGKAFRVSSHLVQHHSV-HSGERP 40
Score = 27.1 bits (61), Expect = 2.9
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQP 691
C +C K F L +H + H+ +P
Sbjct: 15 CQVCGKAFRVSSHLVQHHSV-HSGERP 40
Score = 26.3 bits (59), Expect = 5.2
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
KC+ CGK F S+L H
Sbjct: 14 KCQVCGKAFRVSSHLVQH 31
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 34.5 bits (78), Expect = 0.023
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 20 CELCYKV-FESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLK 75
C C V ++ E L +H++ + + F C C K+ S A + H A H L
Sbjct: 37 CPTCQAVGRKTIEGLKKHMENC---KQEMFTCHHCGKQLRSLAGMKYHVMANHNSLP 90
Score = 31.0 bits (69), Expect = 0.36
Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 173 HLLIHNGPKYTCEIC-AKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAH 231
+L I + +C C A + L H + + E C CGK + +K H
Sbjct: 26 YLEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEM----FTCHHCGKQLRSLAGMKYH 81
Query: 232 IENNH 236
+ NH
Sbjct: 82 VMANH 86
Score = 30.2 bits (67), Expect = 0.77
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 154 KFECYVCSKVLATS-HSLKRHLLIHNGPKYTCEICAKEFTRVYELNIH 200
C C V + LK+H+ +TC C K+ + + H
Sbjct: 34 SVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYH 81
Score = 28.3 bits (62), Expect = 3.2
Identities = 6/27 (22%), Positives = 9/27 (33%)
Query: 661 DRIPCTLCDKTFTRKDSLKKHIRIFHT 687
+ C C K +K H+ H
Sbjct: 61 EMFTCHHCGKQLRSLAGMKYHVMANHN 87
Score = 27.5 bits (60), Expect = 6.3
Identities = 11/52 (21%), Positives = 15/52 (28%), Gaps = 3/52 (5%)
Query: 43 KESKRFKCEQCDK-RFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLK 93
+ C C + L KH Q + C CGK +K
Sbjct: 30 VDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEM--FTCHHCGKQLRSLAGMK 79
Score = 27.1 bits (59), Expect = 9.6
Identities = 9/54 (16%), Positives = 19/54 (35%)
Query: 545 INRNMLDVILKESGHEIKSRIPCELCYKTFTRKDSLRKHMKIFHTRRNPSANSG 598
+ R ++ + K + + C C K ++ H+ H +SG
Sbjct: 43 VGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYHVMANHNSLPSGPSSG 96
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.023
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 119 HQRL----KLHECDLCGKNFSQRNNLKRH 143
K ++C+ CGK F + L RH
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRH 31
Score = 30.6 bits (70), Expect = 0.17
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKH 66
+ K +KC +C K F N+ L++H
Sbjct: 2 SSGSSGTGE--KPYKCNECGKVFRHNSYLSRH 31
Score = 30.2 bits (69), Expect = 0.23
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C C K F L+ H+++H
Sbjct: 2 SSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 29.0 bits (66), Expect = 0.52
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 4/28 (14%)
Query: 71 HQRL----KLHECDLCGKNFSQRNNLKR 94
K ++C+ CGK F + L R
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSR 30
Score = 28.2 bits (64), Expect = 1.00
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNGPK-YTCE 185
++C C KV + L RH IH G K
Sbjct: 13 YKCNECGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 27.9 bits (63), Expect = 1.6
Identities = 10/18 (55%), Positives = 10/18 (55%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
KC CGKVF S L H
Sbjct: 14 KCNECGKVFRHNSYLSRH 31
Score = 27.5 bits (62), Expect = 2.0
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQP 691
C C K F L +H RI HT +P
Sbjct: 15 CNECGKVFRHNSYLSRHQRI-HTGEKP 40
Score = 27.1 bits (61), Expect = 2.3
Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K F L +H RI H G P
Sbjct: 15 CNECGKVFRHNSYLSRHQRI-HTGEKP 40
Score = 25.9 bits (58), Expect = 7.2
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHTRRNPS 594
C C K F L +H +I HT PS
Sbjct: 15 CNECGKVFRHNSYLSRHQRI-HTGEKPS 41
Score = 25.6 bits (57), Expect = 8.9
Identities = 9/36 (25%), Positives = 13/36 (36%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
G + +C C K F N L +H + T
Sbjct: 1 GSSGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHT 36
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 32.5 bits (75), Expect = 0.027
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 123 KLHECDLCGKNFSQRNNLKRH 143
+++EC CGK+F Q+ +L H
Sbjct: 9 RVYECQECGKSFRQKGSLTLH 29
Score = 29.5 bits (67), Expect = 0.35
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQP 691
C C K+F +K SL H RI HT + P
Sbjct: 13 CQECGKSFRQKGSLTLHERI-HTGSGP 38
Score = 29.1 bits (66), Expect = 0.42
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C+ C KSF +K SL H RI H G+ P
Sbjct: 13 CQECGKSFRQKGSLTLHERI-HTGSGP 38
Score = 29.1 bits (66), Expect = 0.50
Identities = 8/18 (44%), Positives = 14/18 (77%)
Query: 75 KLHECDLCGKNFSQRNNL 92
+++EC CGK+F Q+ +L
Sbjct: 9 RVYECQECGKSFRQKGSL 26
Score = 27.5 bits (62), Expect = 1.4
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHTRRNPSA 595
C+ C K+F +K SL H +I HT PS+
Sbjct: 13 CQECGKSFRQKGSLTLHERI-HTGSGPSS 40
Score = 27.2 bits (61), Expect = 2.3
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
+C+ CGK F +K +L H
Sbjct: 12 ECQECGKSFRQKGSLTLH 29
Score = 26.4 bits (59), Expect = 3.7
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 5/28 (17%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQR 73
+ ++C++C K F L +H+R
Sbjct: 9 RVYECQECGKSFRQKGSL-----TLHER 31
Score = 26.0 bits (58), Expect = 6.0
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
+C+ C K+F +K SL H R
Sbjct: 12 ECQECGKSFRQKGSLTLHER 31
Score = 26.0 bits (58), Expect = 6.1
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 177 HNGPK-YTCEICAKEFTRVYELNIHKKLH 204
+G + Y C+ C K F + L +H+++H
Sbjct: 5 SSGQRVYECQECGKSFRQKGSLTLHERIH 33
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.9 bits (76), Expect = 0.027
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
+G K Y C C K F R LN H+++H
Sbjct: 2 SSGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIH 35
Score = 32.1 bits (74), Expect = 0.038
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K ++C CGK F + +L H
Sbjct: 1 GSSGSSGSGEKPYKCSECGKAFHRHTHLNEH 31
Score = 30.5 bits (70), Expect = 0.14
Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
+ K +KC +C K F + LN+H IH +
Sbjct: 2 SSGSSGSGE--KPYKCSECGKAFHRHTHLNEHRR-IHTGYRPSGP 43
Score = 28.6 bits (65), Expect = 0.88
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 4/30 (13%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNLKR 94
K ++C CGK F + +L
Sbjct: 1 GSSGSSGSGEKPYKCSECGKAFHRHTHLNE 30
Score = 27.8 bits (63), Expect = 1.6
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 714 RCELCDKSFTRKDSLKKHNRIFHGGADP 741
+C C K+F R L +H RI H G P
Sbjct: 14 KCSECGKAFHRHTHLNEHRRI-HTGYRP 40
Score = 27.1 bits (61), Expect = 2.3
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C+ C K F R L +H RI HT
Sbjct: 15 CSECGKAFHRHTHLNEHRRI-HT 36
Score = 27.1 bits (61), Expect = 3.0
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
KC CGK F + ++L H
Sbjct: 14 KCSECGKAFHRHTHLNEH 31
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 32.7 bits (75), Expect = 0.028
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 173 HLLIHNGPK-YTC--EICAKEFTRVYELNIHKKLH 204
G K + C C F+R EL+ H++ H
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSH 37
Score = 31.9 bits (73), Expect = 0.058
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 668 CDKTFTRKDSLKKHIRIFHTQNQP 691
C F+R D L +H R H+ +P
Sbjct: 20 CGWRFSRSDELSRHRRS-HSGVKP 42
Score = 31.9 bits (73), Expect = 0.060
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Query: 718 CDKSFTRKDSLKKHNRIFHGGADP 741
C F+R D L +H R H G P
Sbjct: 20 CGWRFSRSDELSRHRRS-HSGVKP 42
Score = 30.7 bits (70), Expect = 0.15
Identities = 12/47 (25%), Positives = 17/47 (36%), Gaps = 5/47 (10%)
Query: 36 HLKIHDDKESKRFKC--EQCDKRFSSNAELNKHSSAIHQRLKLHECD 80
+ K F C C RFS + EL++H H +K
Sbjct: 3 SGSSGTGE--KPFACTWPGCGWRFSRSDELSRHRR-SHSGVKPSGPS 46
Score = 30.3 bits (69), Expect = 0.18
Identities = 8/38 (21%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 292 GKHMKMHMDDNQIQCRF--CNKYFSRNYNLKQHMKTCT 327
G + C + C FSR+ L +H ++ +
Sbjct: 1 GSSGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHS 38
Score = 29.2 bits (66), Expect = 0.52
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 570 CYKTFTRKDSLRKHMKIFHTRRNPSA 595
C F+R D L +H + H+ PS
Sbjct: 20 CGWRFSRSDELSRHRRS-HSGVKPSG 44
Score = 28.8 bits (65), Expect = 0.80
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 511 CSKTFTRKDSLRKHMR 526
C F+R D L +H R
Sbjct: 20 CGWRFSRSDELSRHRR 35
Score = 27.7 bits (62), Expect = 1.9
Identities = 8/27 (29%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 160 CSKVLATSHSLKRHLLIHNGPK-YTCE 185
C + S L RH H+G K
Sbjct: 20 CGWRFSRSDELSRHRRSHSGVKPSGPS 46
Score = 27.7 bits (62), Expect = 2.1
Identities = 9/32 (28%), Positives = 11/32 (34%), Gaps = 6/32 (18%)
Query: 119 HQRL----KLHECD--LCGKNFSQRNNLKRHL 144
K C CG FS+ + L RH
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHR 34
Score = 26.9 bits (60), Expect = 3.6
Identities = 9/46 (19%), Positives = 12/46 (26%), Gaps = 4/46 (8%)
Query: 8 HIKSHEYVENHMC--ELCYKVFESRENLMRHLKIHDDKESKRFKCE 51
S + C C F + L RH + H K
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGV--KPSGPS 46
Score = 25.7 bits (57), Expect = 7.5
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 780 CNRTFTRNYNLKKHMKT 796
C F+R+ L +H ++
Sbjct: 20 CGWRFSRSDELSRHRRS 36
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.3 bits (80), Expect = 0.033
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 12/30 (40%)
Query: 458 KKDSLKK---HMKVFHTYISPD-----AIK 479
+K +LKK +K++ + D AIK
Sbjct: 18 EKQALKKLQASLKLY----ADDSAPALAIK 43
Score = 31.8 bits (71), Expect = 0.45
Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 7/35 (20%)
Query: 380 EENEDRENQSEEENYTP--VPEVSIKRETDPLSVE 412
E+ ++ Q+ + Y P ++IK ++E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKA-----TME 47
Score = 29.9 bits (66), Expect = 1.8
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 11/35 (31%)
Query: 675 KDSLKK---HIRIFHTQNQPQHTNVIEVALGARAN 706
K +LKK ++++ + P AL +A
Sbjct: 19 KQALKKLQASLKLYADDSAP--------ALAIKAT 45
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 32.6 bits (75), Expect = 0.035
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 117 AIHQRL----KLHECDLCGKNFSQRNNLKRH 143
K ++C CGK F ++ +H
Sbjct: 1 GSSGSSGTGEKPYKCMECGKAFGDNSSCTQH 31
Score = 29.1 bits (66), Expect = 0.46
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C C K F H++LH
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLH 35
Score = 28.7 bits (65), Expect = 0.67
Identities = 6/28 (21%), Positives = 10/28 (35%), Gaps = 4/28 (14%)
Query: 69 AIHQRL----KLHECDLCGKNFSQRNNL 92
K ++C CGK F ++
Sbjct: 1 GSSGSSGTGEKPYKCMECGKAFGDNSSC 28
Score = 28.3 bits (64), Expect = 0.85
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 36 HLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
+ K +KC +C K F N+ +H +H +
Sbjct: 3 SGSSGTGE--KPYKCMECGKAFGDNSSCTQHQR-LHTGQRPSGP 43
Score = 27.5 bits (62), Expect = 2.0
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 714 RCELCDKSFTRKDSLKKHNRIFHGGADP 741
+C C K+F S +H R+ H G P
Sbjct: 14 KCMECGKAFGDNSSCTQHQRL-HTGQRP 40
Score = 26.8 bits (60), Expect = 3.1
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNGPK-YTCE 185
++C C K + S +H +H G +
Sbjct: 13 YKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 26.8 bits (60), Expect = 3.9
Identities = 8/18 (44%), Positives = 9/18 (50%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
KC CGK F S+ H
Sbjct: 14 KCMECGKAFGDNSSCTQH 31
Score = 26.4 bits (59), Expect = 4.1
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQP 691
C C K F S +H R+ HT +P
Sbjct: 15 CMECGKAFGDNSSCTQHQRL-HTGQRP 40
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 33.8 bits (76), Expect = 0.037
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 20 CELCYKVF-ESRENLMRHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLK 75
C C V ++ L +H+++ K KC+ C K+F S A LN H+ A H
Sbjct: 27 CPTCNVVTRKTLVGLKKHMEVCQ-KLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
Score = 31.8 bits (71), Expect = 0.21
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 556 ESGHEIKSRIPCELCYKTFTRKDSLRKHMKIFHTRRNPSANSGNSGTSAPPA 607
E +++ + C+ C K F K L H H+ + A + G S P +
Sbjct: 46 EVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKPSDAEASEGGESGPSS 97
Score = 31.1 bits (69), Expect = 0.35
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Query: 173 HLLIHNGPKYTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHI 232
IH + C C TR + + K + + + + LKC+ C K F K+ L H
Sbjct: 16 QRAIHERGEAVCPTC-NVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHT 74
Query: 233 ENNH 236
H
Sbjct: 75 MAEH 78
Score = 29.9 bits (66), Expect = 0.84
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 446 IIQCHICLKTFAKKDSLKKHMKVFHTYISPDAIKEESGEGKPN 488
++C C K F K L H H+ DA E GE P+
Sbjct: 54 ALKCQHCRKQFKSKAGLNYHTMAEHSAKPSDAEASEGGESGPS 96
Score = 29.9 bits (66), Expect = 1.1
Identities = 10/46 (21%), Positives = 14/46 (30%)
Query: 106 SSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRHLEEVHRTD 151
+ L KH + +C C K F + L H H
Sbjct: 36 KTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAK 81
Score = 29.1 bits (64), Expect = 1.7
Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 43 KESKRFKCEQCDKRF-SSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLK 93
E C C+ + L KH + +C C K F + L
Sbjct: 20 HERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLN 71
Score = 28.4 bits (62), Expect = 2.8
Identities = 9/32 (28%), Positives = 11/32 (34%)
Query: 660 IDRIPCTLCDKTFTRKDSLKKHIRIFHTQNQP 691
D + C C K F K L H H+
Sbjct: 52 QDALKCQHCRKQFKSKAGLNYHTMAEHSAKPS 83
Score = 28.0 bits (61), Expect = 5.0
Identities = 17/78 (21%), Positives = 22/78 (28%), Gaps = 24/78 (30%)
Query: 662 RIPCTLCDKTFTRK--DSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCD 719
C C TRK LKKH+ + ++C+ C
Sbjct: 24 EAVCPTC-NVVTRKTLVGLKKHMEVCQKLQDA---------------------LKCQHCR 61
Query: 720 KSFTRKDSLKKHNRIFHG 737
K F K L H H
Sbjct: 62 KQFKSKAGLNYHTMAEHS 79
Score = 27.6 bits (60), Expect = 5.4
Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 275 YLTCLIC-FKTFLTEVDLGKHMKM-HMDDNQIQCRFCNKYFSRNYNLKQHMKT 325
C C T T V L KHM++ + ++C+ C K F L H
Sbjct: 24 EAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA 76
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 34.0 bits (77), Expect = 0.037
Identities = 13/85 (15%), Positives = 23/85 (27%), Gaps = 1/85 (1%)
Query: 164 LATSHSLKRHLLIHNGPKYTCEICAKEFTRVYELNIH-KKLHEDESVANQLKCEFCGKVF 222
+A H Y C+ C + + H H + + + C C +
Sbjct: 1 MAHHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLT 60
Query: 223 LKKSNLKAHIENNHLDYSCLECKAV 247
+ L H H + V
Sbjct: 61 KRYDALSEHNLKYHPGEENFKLTMV 85
Score = 30.1 bits (67), Expect = 0.88
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 112 NKHSSAIHQRLKLHECDLCGKNFSQRNNLKRHLEEVHRTDGMK--FECYVCSKVLATSHS 169
+ H+ + +EC C N H++ H + + C C+ + +
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDA 65
Query: 170 LKRH 173
L H
Sbjct: 66 LSEH 69
Score = 29.4 bits (65), Expect = 1.3
Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 18/81 (22%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQPQHTNVIEVALGARANAAFIDRIRCELCDKSFTR 724
C C + H+ +H NV N++++ C C+ R
Sbjct: 21 CKYCTFQTPDLNMFTFHV-------DSEHPNV-------VLNSSYV----CVECNFLTKR 62
Query: 725 KDSLKKHNRIFHGGADPKVMD 745
D+L +HN +H G + +
Sbjct: 63 YDALSEHNLKYHPGEENFKLT 83
Score = 29.0 bits (64), Expect = 2.3
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 3/63 (4%)
Query: 35 RHLKIHDDKESKRFKCEQCDKRFSSNAELNKHSSAIHQRLKL---HECDLCGKNFSQRNN 91
H + K ++C+ C + H + H + L + C C + +
Sbjct: 6 HHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDA 65
Query: 92 LKR 94
L
Sbjct: 66 LSE 68
Score = 27.4 bits (60), Expect = 6.4
Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 10/63 (15%)
Query: 239 YSCLECKAVGEEISFDTK--KNLLLHLKTKHKNVISNVYLTCLICFKTFLTEVDLGKH-M 295
Y C C +F T H+ ++H NV+ N C+ C L +H +
Sbjct: 19 YECKYC-------TFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNL 71
Query: 296 KMH 298
K H
Sbjct: 72 KYH 74
Score = 27.4 bits (60), Expect = 7.5
Identities = 8/66 (12%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 8 HIKSHEYVENHMCELCYKVFESRENLMRHLKIH--DDKESKRFKCEQCDKRFSSNAELNK 65
+ ++ + + C+ C H+ + + + C +C+ L++
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSE 68
Query: 66 HSSAIH 71
H+ H
Sbjct: 69 HNLKYH 74
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 32.1 bits (74), Expect = 0.039
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 714 RCELCDKSFTRKDSLKKHNRIFHGGADP 741
+C CD F++ SL+ H + H G P
Sbjct: 14 KCRECDMCFSQASSLRLHQNV-HVGEKP 40
Score = 31.7 bits (73), Expect = 0.056
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C CD F++ SL+ H + H
Sbjct: 15 CRECDMCFSQASSLRLHQNV-HV 36
Score = 30.6 bits (70), Expect = 0.15
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 119 HQRL----KLHECDLCGKNFSQRNNLKRH 143
K +C C FSQ ++L+ H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLH 31
Score = 30.2 bits (69), Expect = 0.18
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K + C C F++ L +H+ +H
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVH 35
Score = 30.2 bits (69), Expect = 0.21
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 5/28 (17%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQR 73
K +KC +CD FS + L +HQ
Sbjct: 11 KTWKCRECDMCFSQASSLR-----LHQN 33
Score = 29.4 bits (67), Expect = 0.38
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHTRRNPS 594
C C F++ SLR H + H PS
Sbjct: 15 CRECDMCFSQASSLRLHQNV-HVGEKPS 41
Score = 29.4 bits (67), Expect = 0.39
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
KC C F + S+L+ H
Sbjct: 14 KCRECDMCFSQASSLRLH 31
Score = 28.3 bits (64), Expect = 0.93
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 508 CRICSKTFTRKDSLRKHMR 526
CR C F++ SLR H
Sbjct: 15 CRECDMCFSQASSLRLHQN 33
Score = 27.1 bits (61), Expect = 2.5
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
G M + +CR C+ FS+ +L+ H
Sbjct: 1 GSSGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHV 36
Score = 26.7 bits (60), Expect = 3.7
Identities = 7/28 (25%), Positives = 11/28 (39%), Gaps = 4/28 (14%)
Query: 71 HQRL----KLHECDLCGKNFSQRNNLKR 94
K +C C FSQ ++L+
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRL 30
Score = 25.6 bits (57), Expect = 8.2
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNGPK-YTC 184
++C C + + SL+ H +H G K
Sbjct: 13 WKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 31.7 bits (72), Expect = 0.041
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGG 738
C LC+++FTR+D L +H + H G
Sbjct: 5 CGLCNRAFTRRDLLIRHAQKIHSG 28
Score = 31.0 bits (70), Expect = 0.090
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 507 QCRICSKTFTRKDSLRKHMRRFH 529
C +C++ FTR+D L +H ++ H
Sbjct: 4 ACGLCNRAFTRRDLLIRHAQKIH 26
Score = 29.4 bits (66), Expect = 0.29
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 123 KLHECDLCGKNFSQRNNLKRHLEEVHRTD 151
K + C LC + F++R+ L RH +++H +
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN 29
Score = 29.1 bits (65), Expect = 0.41
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQN 689
C LC++ FTR+D L +H + H+ N
Sbjct: 5 CGLCNRAFTRRDLLIRHAQKIHSGN 29
Score = 26.7 bits (59), Expect = 2.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 776 LCKICNRTFTRNYNLKKHMKTVHK 799
C +CNR FTR L +H + +H
Sbjct: 4 ACGLCNRAFTRRDLLIRHAQKIHS 27
Score = 26.4 bits (58), Expect = 3.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 567 CELCYKTFTRKDSLRKHMKIFH 588
C LC + FTR+D L +H + H
Sbjct: 5 CGLCNRAFTRRDLLIRHAQKIH 26
Score = 26.4 bits (58), Expect = 3.9
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 445 KIIQCHICLKTFAKKDSLKKHMKVFH 470
K C +C + F ++D L +H + H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIH 26
Score = 25.6 bits (56), Expect = 5.9
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQ 72
K + C C++ F+ L +H+ IH
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHS 27
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 31.8 bits (73), Expect = 0.043
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 668 CDKTFTRKDSLKKHIRIFHT 687
C K FTR D L++H R HT
Sbjct: 10 CGKRFTRSDELQRHKRT-HT 28
Score = 30.3 bits (69), Expect = 0.13
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 718 CDKSFTRKDSLKKHNRIFHGG 738
C K FTR D L++H R H G
Sbjct: 10 CGKRFTRSDELQRHKRT-HTG 29
Score = 28.0 bits (63), Expect = 0.81
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 511 CSKTFTRKDSLRKHMR 526
C K FTR D L++H R
Sbjct: 10 CGKRFTRSDELQRHKR 25
Score = 27.2 bits (61), Expect = 1.9
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 182 YTC--EICAKEFTRVYELNIHKKLHEDE 207
+ C C K FTR EL HK+ H E
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGE 30
Score = 26.8 bits (60), Expect = 2.6
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 570 CYKTFTRKDSLRKHMKIFHT 589
C K FTR D L++H + HT
Sbjct: 10 CGKRFTRSDELQRHKRT-HT 28
Score = 26.4 bits (59), Expect = 2.8
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 46 KRFKC--EQCDKRFSSNAELNKH 66
+ F C C KRF+ + EL +H
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRH 23
Score = 26.4 bits (59), Expect = 2.9
Identities = 11/29 (37%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 155 FECYV--CSKVLATSHSLKRHLLIHNGPK 181
F C C K S L+RH H G K
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 26.0 bits (58), Expect = 5.3
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 308 FCNKYFSRNYNLKQHMKTCT 327
+C K F+R+ L++H +T T
Sbjct: 9 YCGKRFTRSDELQRHKRTHT 28
Score = 25.3 bits (56), Expect = 8.7
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 780 CNRTFTRNYNLKKHMKT 796
C + FTR+ L++H +T
Sbjct: 10 CGKRFTRSDELQRHKRT 26
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 32.1 bits (74), Expect = 0.047
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
+G + Y C C K F R L H K H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRH 35
Score = 30.6 bits (70), Expect = 0.16
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 118 IHQRLKLHECDLCGKNFSQRNNLKRH 143
+ + C+ CGKNF + ++L H
Sbjct: 6 SGSGERPYGCNECGKNFGRHSHLIEH 31
Score = 30.2 bits (69), Expect = 0.18
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQP 691
C C K F R L +H++ H + +
Sbjct: 15 CNECGKNFGRHSHLIEHLKR-HFREKS 40
Score = 29.4 bits (67), Expect = 0.37
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
+ + C +C K F ++ L +H H R K
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLK-RHFREKSSGP 43
Score = 28.6 bits (65), Expect = 0.64
Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHTRRNP 593
C C K F R L +H+K H R
Sbjct: 15 CNECGKNFGRHSHLIEHLKR-HFREKS 40
Score = 28.6 bits (65), Expect = 0.85
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 714 RCELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K+F R L +H + H
Sbjct: 14 GCNECGKNFGRHSHLIEHLKR-HFREKS 40
Score = 26.7 bits (60), Expect = 4.0
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 70 IHQRLKLHECDLCGKNFSQRNNLKR 94
+ + C+ CGKNF + ++L
Sbjct: 6 SGSGERPYGCNECGKNFGRHSHLIE 30
Score = 26.3 bits (59), Expect = 4.7
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKT 325
G + C C K F R+ +L +H+K
Sbjct: 1 GSSGSSGSGERPYGCNECGKNFGRHSHLIEHLKR 34
Score = 26.3 bits (59), Expect = 5.2
Identities = 8/31 (25%), Positives = 9/31 (29%), Gaps = 1/31 (3%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNGPK-YTC 184
+ C C K L HL H K
Sbjct: 13 YGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 25.9 bits (58), Expect = 7.1
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 20 CELCYKVFESRENLMRHLKIH 40
C C K F +L+ HLK H
Sbjct: 15 CNECGKNFGRHSHLIEHLKRH 35
Score = 25.9 bits (58), Expect = 7.7
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 508 CRICSKTFTRKDSLRKHMR 526
C C K F R L +H++
Sbjct: 15 CNECGKNFGRHSHLIEHLK 33
Score = 25.6 bits (57), Expect = 9.3
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
C CGK F + S+L H
Sbjct: 14 GCNECGKNFGRHSHLIEH 31
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 31.7 bits (73), Expect = 0.052
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 115 SSAIHQRLKLHECDLCGKNFSQRNNLKRH 143
S + +EC CGK FS+++ L H
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSH 31
Score = 29.8 bits (68), Expect = 0.25
Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C K F+RKD L H + H+
Sbjct: 15 CCECGKVFSRKDQLVSHQKT-HS 36
Score = 28.6 bits (65), Expect = 0.76
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDES 208
G Y C C K F+R +L H+K H +S
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSHQKTHSGQS 39
Score = 28.6 bits (65), Expect = 0.77
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHTRRNP 593
C C K F+RKD L H K H+ ++
Sbjct: 15 CCECGKVFSRKDQLVSHQKT-HSGQSG 40
Score = 28.6 bits (65), Expect = 0.80
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 67 SSAIHQRLKLHECDLCGKNFSQRNNL 92
S + +EC CGK FS+++ L
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQL 28
Score = 28.2 bits (64), Expect = 0.94
Identities = 11/27 (40%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K F+RKD L H + H G
Sbjct: 15 CCECGKVFSRKDQLVSHQKT-HSGQSG 40
Score = 27.8 bits (63), Expect = 1.3
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 508 CRICSKTFTRKDSLRKHMR 526
C C K F+RKD L H +
Sbjct: 15 CCECGKVFSRKDQLVSHQK 33
Score = 26.7 bits (60), Expect = 3.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
+C CGKVF +K L +H
Sbjct: 14 ECCECGKVFSRKDQLVSH 31
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 31.7 bits (73), Expect = 0.055
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 123 KLHECDLCGKNFSQRNNLKRH 143
+EC CGK F++++ L H
Sbjct: 9 NPYECSECGKAFNRKDQLISH 29
Score = 29.4 bits (67), Expect = 0.40
Identities = 11/23 (47%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C+ C K F RKD L H R H
Sbjct: 13 CSECGKAFNRKDQLISHQRT-HA 34
Score = 29.0 bits (66), Expect = 0.57
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K+F RKD L H R H G
Sbjct: 13 CSECGKAFNRKDQLISHQRT-HAGESG 38
Score = 28.6 bits (65), Expect = 0.66
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 75 KLHECDLCGKNFSQRNNL 92
+EC CGK F++++ L
Sbjct: 9 NPYECSECGKAFNRKDQL 26
Score = 26.3 bits (59), Expect = 4.0
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 176 IHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
+G Y C C K F R +L H++ H
Sbjct: 4 GSSGENPYECSECGKAFNRKDQLISHQRTH 33
Score = 26.3 bits (59), Expect = 4.2
Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHT 589
C C K F RKD L H + H
Sbjct: 13 CSECGKAFNRKDQLISHQRT-HA 34
Score = 26.3 bits (59), Expect = 4.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
+C C K F RKD L H R
Sbjct: 12 ECSECGKAFNRKDQLISHQR 31
Score = 25.9 bits (58), Expect = 6.2
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
+C CGK F +K L +H
Sbjct: 12 ECSECGKAFNRKDQLISH 29
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.7 bits (73), Expect = 0.058
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 123 KLHECDLCGKNFSQRNNLKRH 143
K +EC C K F Q +L +H
Sbjct: 11 KPYECKECRKTFIQIGHLNQH 31
Score = 30.6 bits (70), Expect = 0.16
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
+G K Y C+ C K F ++ LN HK++H
Sbjct: 2 SSGSSGSGKKPYECKECRKTFIQIGHLNQHKRVH 35
Score = 29.0 bits (66), Expect = 0.61
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
K ++C++C K F LN+H +H +
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKR-VHTGERSSGP 43
Score = 28.7 bits (65), Expect = 0.84
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQP 691
C C KTF + L +H R+ HT +
Sbjct: 15 CKECRKTFIQIGHLNQHKRV-HTGERS 40
Score = 27.9 bits (63), Expect = 1.4
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 75 KLHECDLCGKNFSQRNNLKR 94
K +EC C K F Q +L +
Sbjct: 11 KPYECKECRKTFIQIGHLNQ 30
Score = 27.5 bits (62), Expect = 1.9
Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C+ C K+F + L +H R+ H G
Sbjct: 15 CKECRKTFIQIGHLNQHKRV-HTGERS 40
Score = 27.1 bits (61), Expect = 2.5
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHTRRNPS 594
C+ C KTF + L +H ++ HT S
Sbjct: 15 CKECRKTFIQIGHLNQHKRV-HTGERSS 41
Score = 26.7 bits (60), Expect = 3.3
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
+C+ C K F++ +L H
Sbjct: 14 ECKECRKTFIQIGHLNQH 31
Score = 26.3 bits (59), Expect = 5.5
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
+C+ C KTF + L +H R
Sbjct: 14 ECKECRKTFIQIGHLNQHKR 33
Score = 26.0 bits (58), Expect = 5.8
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNGPK-YTCE 185
+EC C K L +H +H G +
Sbjct: 13 YECKECRKTFIQIGHLNQHKRVHTGERSSGPS 44
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 31.7 bits (73), Expect = 0.061
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 116 SAIHQRLKLHECDLCGKNFSQRNNLKRH 143
S+ K C C K FS ++ L H
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVH 29
Score = 29.4 bits (67), Expect = 0.38
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C+ C+K F+ K L H + H
Sbjct: 13 CSCCEKAFSSKSYLLVHQQT-HA 34
Score = 29.4 bits (67), Expect = 0.39
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 5/28 (17%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQR 73
K F C C+K FSS + L +HQ+
Sbjct: 9 KPFGCSCCEKAFSSKSYL-----LVHQQ 31
Score = 29.0 bits (66), Expect = 0.56
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 176 IHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
+G K + C C K F+ L +H++ H
Sbjct: 4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTH 33
Score = 28.7 bits (65), Expect = 0.62
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 68 SAIHQRLKLHECDLCGKNFSQRNNL 92
S+ K C C K FS ++ L
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYL 26
Score = 28.7 bits (65), Expect = 0.63
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C+K+F+ K L H + H P
Sbjct: 13 CSCCEKAFSSKSYLLVHQQT-HAEEKP 38
Score = 27.1 bits (61), Expect = 2.6
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
C C K F KS L H
Sbjct: 12 GCSCCEKAFSSKSYLLVH 29
Score = 26.3 bits (59), Expect = 4.7
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
C C K F+ K L H +
Sbjct: 12 GCSCCEKAFSSKSYLLVHQQ 31
Score = 25.6 bits (57), Expect = 8.3
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHTRRNPSA-NSG 598
C C K F+ K L H + H PS +SG
Sbjct: 13 CSCCEKAFSSKSYLLVHQQT-HAEEKPSGPSSG 44
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 31.1 bits (71), Expect = 0.062
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQ 688
C +C + F R++ LK+H R HT
Sbjct: 5 CEVCTRAFARQEHLKRHYRS-HTN 27
Score = 29.2 bits (66), Expect = 0.30
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 714 RCELCDKSFTRKDSLKKHNR 733
CE+C ++F R++ LK+H R
Sbjct: 4 VCEVCTRAFARQEHLKRHYR 23
Score = 29.2 bits (66), Expect = 0.38
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
C +C++ F R++ L++H R
Sbjct: 4 VCEVCTRAFARQEHLKRHYR 23
Score = 28.1 bits (63), Expect = 0.72
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 776 LCKICNRTFTRNYNLKKHMKT 796
+C++C R F R +LK+H ++
Sbjct: 4 VCEVCTRAFARQEHLKRHYRS 24
Score = 28.1 bits (63), Expect = 0.96
Identities = 7/22 (31%), Positives = 15/22 (68%)
Query: 123 KLHECDLCGKNFSQRNNLKRHL 144
+ C++C + F+++ +LKRH
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHY 22
Score = 27.7 bits (62), Expect = 1.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 18 HMCELCYKVFESRENLMRHLKIH 40
+CE+C + F +E+L RH + H
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSH 25
Score = 26.5 bits (59), Expect = 2.7
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 154 KFECYVCSKVLATSHSLKRHLLIHNGPK 181
F C VC++ A LKRH H K
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 26.5 bits (59), Expect = 2.9
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 305 QCRFCNKYFSRNYNLKQHMKTCTK 328
C C + F+R +LK+H ++ T
Sbjct: 4 VCEVCTRAFARQEHLKRHYRSHTN 27
Score = 26.5 bits (59), Expect = 3.4
Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHTR 590
CE+C + F R++ L++H + HT
Sbjct: 5 CEVCTRAFARQEHLKRHYRS-HTN 27
Score = 25.7 bits (57), Expect = 6.0
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 181 KYTCEICAKEFTRVYELNIHKKLHEDE 207
+ CE+C + F R L H + H +E
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNE 28
Score = 25.4 bits (56), Expect = 7.4
Identities = 9/27 (33%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 445 KIIQCHICLKTFAKKDSLKKHMKVFHT 471
+ C +C + FA+++ LK+H + HT
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRS-HT 26
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 31.8 bits (72), Expect = 0.066
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 714 RCELCDKSFTRKDSLKKHNRIFHGG 738
+C CD+ FT+++ L +H R H
Sbjct: 14 KCSKCDRVFTQRNYLVQHERT-HAR 37
Score = 30.2 bits (68), Expect = 0.23
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 46 KRFKCEQCDKRFSSNAELNKH 66
FKC +CD+ F+ L +H
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQH 31
Score = 29.8 bits (67), Expect = 0.27
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDES 208
G + C C + FT+ L H++ H +S
Sbjct: 2 SSGSSGAGENPFKCSKCDRVFTQRNYLVQHERTHARKS 39
Score = 29.8 bits (67), Expect = 0.28
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQP 691
C+ CD+ FT+++ L +H R ++ P
Sbjct: 15 CSKCDRVFTQRNYLVQHERTHARKSGP 41
Score = 29.1 bits (65), Expect = 0.47
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 115 SSAIHQRLKLHECDLCGKNFSQRNNLKRH 143
S + +C C + F+QRN L +H
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQH 31
Score = 28.3 bits (63), Expect = 1.0
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKT 325
G +N +C C++ F++ L QH +T
Sbjct: 1 GSSGSSGAGENPFKCSKCDRVFTQRNYLVQHERT 34
Score = 28.3 bits (63), Expect = 1.1
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 20 CELCYKVFESRENLMRHLKIHDDKES 45
C C +VF R L++H + H K
Sbjct: 15 CSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 27.5 bits (61), Expect = 1.9
Identities = 8/27 (29%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHTRRNP 593
C C + FT+++ L +H + H R++
Sbjct: 15 CSKCDRVFTQRNYLVQHERT-HARKSG 40
Score = 26.4 bits (58), Expect = 4.6
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
+C C + FT+++ L +H R
Sbjct: 14 KCSKCDRVFTQRNYLVQHER 33
Score = 25.6 bits (56), Expect = 9.0
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 67 SSAIHQRLKLHECDLCGKNFSQRNNLKR 94
S + +C C + F+QRN L +
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQ 30
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 31.4 bits (72), Expect = 0.070
Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C+ C+K+F+ K L H R+ HT
Sbjct: 15 CSQCEKSFSGKLRLLVHQRM-HT 36
Score = 31.4 bits (72), Expect = 0.073
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 5/28 (17%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQR 73
+KC QC+K FS L +HQR
Sbjct: 11 NPYKCSQCEKSFSGKLRL-----LVHQR 33
Score = 31.4 bits (72), Expect = 0.084
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 115 SSAIHQRLKLHECDLCGKNFSQRNNLKRH 143
S + + ++C C K+FS + L H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31
Score = 30.6 bits (70), Expect = 0.13
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C+KSF+ K L H R+ H P
Sbjct: 15 CSQCEKSFSGKLRLLVHQRM-HTREKP 40
Score = 29.8 bits (68), Expect = 0.30
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHTRRNPS 594
C C K+F+ K L H ++ HTR PS
Sbjct: 15 CSQCEKSFSGKLRLLVHQRM-HTREKPS 41
Score = 29.4 bits (67), Expect = 0.43
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G Y C C K F+ L +H+++H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 29.0 bits (66), Expect = 0.61
Identities = 8/18 (44%), Positives = 8/18 (44%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
KC C K F K L H
Sbjct: 14 KCSQCEKSFSGKLRLLVH 31
Score = 27.9 bits (63), Expect = 1.6
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 67 SSAIHQRLKLHECDLCGKNFSQRNNL 92
S + + ++C C K+FS + L
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRL 28
Score = 27.1 bits (61), Expect = 2.7
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 508 CRICSKTFTRKDSLRKHMR 526
C C K+F+ K L H R
Sbjct: 15 CSQCEKSFSGKLRLLVHQR 33
Score = 26.0 bits (58), Expect = 5.9
Identities = 10/36 (27%), Positives = 12/36 (33%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
G N +C C K FS L H + T
Sbjct: 1 GSSGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHT 36
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 31.4 bits (71), Expect = 0.075
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 299 MDDNQIQCRF--CNKYFSRNYNLKQHMKT 325
M D +C F C K F R YN++ H++T
Sbjct: 14 MPDKTFECLFPGCTKTFKRRYNIRSHIQT 42
Score = 29.8 bits (67), Expect = 0.33
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 780 CNRTFTRNYNLKKHMKT 796
C +TF R YN++ H++T
Sbjct: 26 CTKTFKRRYNIRSHIQT 42
Score = 28.3 bits (63), Expect = 1.1
Identities = 8/29 (27%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 500 PNNNAIIQCRI--CSKTFTRKDSLRKHMR 526
+ +C C+KTF R+ ++R H++
Sbjct: 13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQ 41
Score = 27.9 bits (62), Expect = 1.4
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
Query: 215 CEF--CGKVFLKKSNLKAHIENNHLD 238
C F C K F ++ N+++HI+ HL+
Sbjct: 21 CLFPGCTKTFKRRYNIRSHIQ-THLE 45
Score = 26.7 bits (59), Expect = 3.3
Identities = 8/22 (36%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 668 CDKTFTRKDSLKKHIRIFHTQN 689
C KTF R+ +++ HI+ H ++
Sbjct: 26 CTKTFKRRYNIRSHIQT-HLED 46
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 31.4 bits (72), Expect = 0.082
Identities = 11/33 (33%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 173 HLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
G K Y C C K F+ Y L H H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 31.4 bits (72), Expect = 0.084
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 123 KLHECDLCGKNFSQRNNLKRH 143
K ++C CGK+FS L +H
Sbjct: 11 KPYQCSECGKSFSGSYRLTQH 31
Score = 28.3 bits (64), Expect = 0.91
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQP 691
C+ C K+F+ L +H HT+ +P
Sbjct: 15 CSECGKSFSGSYRLTQHWIT-HTREKP 40
Score = 28.3 bits (64), Expect = 1.2
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHTRRNPSA-NSG 598
C C K+F+ L +H HTR PS +SG
Sbjct: 15 CSECGKSFSGSYRLTQHWIT-HTREKPSGPSSG 46
Score = 28.3 bits (64), Expect = 1.2
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C KSF+ L +H H P
Sbjct: 15 CSECGKSFSGSYRLTQHWIT-HTREKP 40
Score = 27.5 bits (62), Expect = 1.9
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
K ++C +C K FS + L +H H R K
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWI-THTREKPSGP 43
Score = 27.5 bits (62), Expect = 1.9
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 75 KLHECDLCGKNFSQRNNL 92
K ++C CGK+FS L
Sbjct: 11 KPYQCSECGKSFSGSYRL 28
Score = 27.1 bits (61), Expect = 2.4
Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNGPK-YTC 184
++C C K + S+ L +H + H K
Sbjct: 13 YQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 27.1 bits (61), Expect = 2.7
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 292 GKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCT 327
G + QC C K FS +Y L QH T T
Sbjct: 1 GSSGSSGEGEKPYQCSECGKSFSGSYRLTQHWITHT 36
Score = 27.1 bits (61), Expect = 3.0
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
+C CGK F L H
Sbjct: 14 QCSECGKSFSGSYRLTQH 31
Score = 25.6 bits (57), Expect = 9.3
Identities = 7/20 (35%), Positives = 10/20 (50%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
QC C K+F+ L +H
Sbjct: 14 QCSECGKSFSGSYRLTQHWI 33
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 31.4 bits (72), Expect = 0.085
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 115 SSAIHQRLKLHECDLCGKNFSQRNNLKRH 143
S + + +C+ CGK F +R++L H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGH 31
Score = 30.6 bits (70), Expect = 0.16
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLH 204
+G + + C C K F R L H +LH
Sbjct: 2 SSGSSGSGERPFKCNECGKGFGRRSHLAGHLRLH 35
Score = 29.8 bits (68), Expect = 0.29
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQRLKLHEC 79
+ FKC +C K F + L H +H R K
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLR-LHSREKSSGP 43
Score = 29.8 bits (68), Expect = 0.32
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHTRRNPSA-NSG 598
C C K F R+ L H+++ H+R S +SG
Sbjct: 15 CNECGKGFGRRSHLAGHLRL-HSREKSSGPSSG 46
Score = 29.0 bits (66), Expect = 0.46
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQP 691
C C K F R+ L H+R+ H++ +
Sbjct: 15 CNECGKGFGRRSHLAGHLRL-HSREKS 40
Score = 28.3 bits (64), Expect = 0.92
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K F R+ L H R+ H
Sbjct: 15 CNECGKGFGRRSHLAGHLRL-HSREKS 40
Score = 28.3 bits (64), Expect = 0.94
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
KC CGK F ++S+L H
Sbjct: 14 KCNECGKGFGRRSHLAGH 31
Score = 27.5 bits (62), Expect = 2.0
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 67 SSAIHQRLKLHECDLCGKNFSQRNNLKR 94
S + + +C+ CGK F +R++L
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAG 30
Score = 26.7 bits (60), Expect = 3.6
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 1/31 (3%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNGPK-YTC 184
F+C C K L HL +H+ K
Sbjct: 13 FKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 26.3 bits (59), Expect = 5.7
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 508 CRICSKTFTRKDSLRKHMR 526
C C K F R+ L H+R
Sbjct: 15 CNECGKGFGRRSHLAGHLR 33
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 33.9 bits (77), Expect = 0.089
Identities = 20/153 (13%), Positives = 41/153 (26%), Gaps = 12/153 (7%)
Query: 180 PKYTCEICAKEFTRVYEL----NIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHIENN 235
KY C IC + K KC ++ L+ +
Sbjct: 17 SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKR 76
Query: 236 HLDYSCLECKAVGEEISFDTKKNLLLHLKTKHKNVISNVYLTCLICFKTFLTEVDLGKHM 295
+ ++C G + + + + C C + F + + H+
Sbjct: 77 EILSLMVKCPNEGCLHKMELRHLEDHQAHCEFALM------DCPQCQRPFQ-KFHINIHI 129
Query: 296 KMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCTK 328
Q+ C C + + + H + C
Sbjct: 130 LKDCPRRQVSCDNCAASMAF-EDKEIHDQNCPL 161
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 30.6 bits (70), Expect = 0.14
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 123 KLHECDLCGKNFSQRNNLKRH 143
K +C CGK F ++ L H
Sbjct: 11 KPCKCTECGKAFCWKSQLIMH 31
Score = 28.3 bits (64), Expect = 0.89
Identities = 10/23 (43%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
CT C K F K L H R H
Sbjct: 15 CTECGKAFCWKSQLIMHQRT-HV 36
Score = 27.9 bits (63), Expect = 1.2
Identities = 10/18 (55%), Positives = 10/18 (55%)
Query: 214 KCEFCGKVFLKKSNLKAH 231
KC CGK F KS L H
Sbjct: 14 KCTECGKAFCWKSQLIMH 31
Score = 27.9 bits (63), Expect = 1.3
Identities = 9/27 (33%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 715 CELCDKSFTRKDSLKKHNRIFHGGADP 741
C C K+F K L H R H
Sbjct: 15 CTECGKAFCWKSQLIMHQRT-HVDDKH 40
Score = 27.5 bits (62), Expect = 1.7
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 172 RHLLIHNGPK-YTCEICAKEFTRVYELNIHKKLHEDE 207
G K C C K F +L +H++ H D+
Sbjct: 2 SSGSSGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDD 38
Score = 27.5 bits (62), Expect = 1.8
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHTRRNPSA-NSG 598
C C K F K L H + H S +SG
Sbjct: 15 CTECGKAFCWKSQLIMHQRT-HVDDKHSGPSSG 46
Score = 27.1 bits (61), Expect = 2.2
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 9/38 (23%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQRL----KLHEC 79
K KC +C K F ++L +HQR K
Sbjct: 11 KPCKCTECGKAFCWKSQL-----IMHQRTHVDDKHSGP 43
Score = 27.1 bits (61), Expect = 2.5
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 75 KLHECDLCGKNFSQRNNL 92
K +C CGK F ++ L
Sbjct: 11 KPCKCTECGKAFCWKSQL 28
Score = 26.4 bits (59), Expect = 5.2
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
+C C K F K L H R
Sbjct: 14 KCTECGKAFCWKSQLIMHQR 33
>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance,
handed quadrilateral beta-helix; 1.80A {Klebsiella
pneumoniae} PDB: 2xtw_A 2xtx_A
Length = 217
Score = 33.6 bits (78), Expect = 0.18
Identities = 12/96 (12%), Positives = 24/96 (25%), Gaps = 26/96 (27%)
Query: 59 SNAELNKHSSAIHQRLKLHECDLCGKNFSQRN----NLKRQANGSNVNNRFS-------- 106
+ + CD G + S + + N FS
Sbjct: 14 DRNRF---TGEKIENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCN--FSRAMLKDAI 68
Query: 107 ------SNAELNKHSSAIHQRLKLHECDLCGKNFSQ 136
S A+ ++ +++ C G +F
Sbjct: 69 FKSCDLSMADF---RNSSALGIEIRHCRAQGADFRG 101
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 30.4 bits (69), Expect = 0.19
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 116 SAIHQRLKLHECDLCGKNFSQRNNLKRH 143
S+ K + C C + FS N L +H
Sbjct: 2 SSGSSGEKPYSCAECKETFSDNNRLVQH 29
Score = 28.8 bits (65), Expect = 0.52
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 177 HNGPK-YTCEICAKEFTRVYELNIHKKLHEDES 208
+G K Y+C C + F+ L H+K+H +S
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMHTVKS 37
Score = 28.4 bits (64), Expect = 0.93
Identities = 8/23 (34%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHT 687
C C +TF+ + L +H ++ HT
Sbjct: 13 CAECKETFSDNNRLVQHQKM-HT 34
Score = 27.7 bits (62), Expect = 1.5
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 305 QCRFCNKYFSRNYNLKQHMKTCT 327
C C + FS N L QH K T
Sbjct: 12 SCAECKETFSDNNRLVQHQKMHT 34
Score = 27.3 bits (61), Expect = 2.1
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 46 KRFKCEQCDKRFSSNAELNKH 66
K + C +C + FS N L +H
Sbjct: 9 KPYSCAECKETFSDNNRLVQH 29
Score = 27.3 bits (61), Expect = 2.5
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 567 CELCYKTFTRKDSLRKHMKIFHTRRNPSA 595
C C +TF+ + L +H K+ HT ++ +
Sbjct: 13 CAECKETFSDNNRLVQHQKM-HTVKSGPS 40
Score = 26.5 bits (59), Expect = 4.4
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 68 SAIHQRLKLHECDLCGKNFSQRNNLKR 94
S+ K + C C + FS N L +
Sbjct: 2 SSGSSGEKPYSCAECKETFSDNNRLVQ 28
Score = 26.1 bits (58), Expect = 5.5
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 715 CELCDKSFTRKDSLKKHNRI 734
C C ++F+ + L +H ++
Sbjct: 13 CAECKETFSDNNRLVQHQKM 32
Score = 25.4 bits (56), Expect = 9.2
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 20 CELCYKVFESRENLMRHLKIH 40
C C + F L++H K+H
Sbjct: 13 CAECKETFSDNNRLVQHQKMH 33
Score = 25.4 bits (56), Expect = 9.3
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 777 CKICNRTFTRNYNLKKHMKT 796
C C TF+ N L +H K
Sbjct: 13 CAECKETFSDNNRLVQHQKM 32
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 30.2 bits (67), Expect = 0.21
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 149 RTDGMKFECYVCSKVLATSHSLKRHLLIHNGPK 181
+ G F C C+KV HSL+ HL IH K
Sbjct: 4 GSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 27.1 bits (59), Expect = 2.2
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 11 SHEYVENHMCELCYKVFESRENLMRHLKIHDDKE 44
S + CE C KVF+ + +L HL+IH +++
Sbjct: 3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 26.4 bits (57), Expect = 3.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 497 GKVPNNNAIIQCRICSKTFTRKDSLRKHMR 526
G ++ I C C+K F K SL+ H+R
Sbjct: 1 GSSGSSGKIFTCEYCNKVFKFKHSLQAHLR 30
Score = 26.4 bits (57), Expect = 4.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 208 SVANQLKCEFCGKVFLKKSNLKAHI 232
S CE+C KVF K +L+AH+
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAHL 29
Score = 26.0 bits (56), Expect = 5.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 715 CELCDKSFTRKDSLKKHNRI 734
CE C+K F K SL+ H RI
Sbjct: 12 CEYCNKVFKFKHSLQAHLRI 31
Score = 26.0 bits (56), Expect = 5.8
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 665 CTLCDKTFTRKDSLKKHIRIFHTQNQ 690
C C+K F K SL+ H+RI HT +
Sbjct: 12 CEYCNKVFKFKHSLQAHLRI-HTNEK 36
Score = 26.0 bits (56), Expect = 6.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 182 YTCEICAKEFTRVYELNIHKKLHEDE 207
+TCE C K F + L H ++H +E
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNE 35
Score = 25.6 bits (55), Expect = 8.9
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 300 DDNQIQCRFCNKYFSRNYNLKQHMKTCTK 328
C +CNK F ++L+ H++ T
Sbjct: 6 SGKIFTCEYCNKVFKFKHSLQAHLRIHTN 34
>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain,
PRMT3, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.37.1.5
Length = 121
Score = 32.3 bits (73), Expect = 0.21
Identities = 11/54 (20%), Positives = 16/54 (29%)
Query: 762 EDGEGEPVSITNEILCKICNRTFTRNYNLKKHMKTVHKIDDNEPYFAYENTEYD 815
GEP C C+R F H K H+ + + + Y
Sbjct: 3 SGSSGEPAHGRQHTPCLFCDRLFASAEETFSHCKLEHQFNIDSMVHKHGLEFYG 56
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 29.5 bits (66), Expect = 0.24
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 662 RIPCTLCDKTFTRKDSLKKHIR 683
+ C C K F R D L HI
Sbjct: 2 KFACPECPKRFMRSDHLTLHIL 23
Score = 28.7 bits (64), Expect = 0.56
Identities = 8/21 (38%), Positives = 9/21 (42%)
Query: 507 QCRICSKTFTRKDSLRKHMRR 527
C C K F R D L H+
Sbjct: 4 ACPECPKRFMRSDHLTLHILL 24
Score = 27.9 bits (62), Expect = 1.0
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 564 RIPCELCYKTFTRKDSLRKHMKIFHTRR 591
+ C C K F R D L H+ + ++
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLHENKK 29
Score = 27.6 bits (61), Expect = 1.4
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 47 RFKCEQCDKRFSSNAELNKHSSAIHQRLK 75
+F C +C KRF + L H +H+ K
Sbjct: 2 KFACPECPKRFMRSDHLTLHIL-LHENKK 29
Score = 27.2 bits (60), Expect = 1.9
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 712 RIRCELCDKSFTRKDSLKKHNR 733
+ C C K F R D L H
Sbjct: 2 KFACPECPKRFMRSDHLTLHIL 23
Score = 26.4 bits (58), Expect = 3.2
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 777 CKICNRTFTRNYNLKKHMKT 796
C C + F R+ +L H+
Sbjct: 5 CPECPKRFMRSDHLTLHILL 24
Score = 25.6 bits (56), Expect = 6.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 181 KYTCEICAKEFTRVYELNIHKKLHEDE 207
K+ C C K F R L +H LHE++
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLHENK 28
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 29.9 bits (67), Expect = 0.24
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 662 RIPCTLCDKTFTRKDSLKKHIR 683
+ C C K F R D L KHI
Sbjct: 2 KFACPECPKRFMRSDHLSKHIT 23
Score = 28.3 bits (63), Expect = 0.68
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 507 QCRICSKTFTRKDSLRKHMRR 527
C C K F R D L KH+
Sbjct: 4 ACPECPKRFMRSDHLSKHITL 24
Score = 28.3 bits (63), Expect = 0.86
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 564 RIPCELCYKTFTRKDSLRKHMKIFHTRRN 592
+ C C K F R D L KH+ +
Sbjct: 2 KFACPECPKRFMRSDHLSKHITLHELLGE 30
Score = 28.0 bits (62), Expect = 1.1
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 47 RFKCEQCDKRFSSNAELNKHSSAIHQRLK 75
+F C +C KRF + L+KH + +H+ L
Sbjct: 2 KFACPECPKRFMRSDHLSKHIT-LHELLG 29
Score = 27.6 bits (61), Expect = 1.5
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 712 RIRCELCDKSFTRKDSLKKHNR 733
+ C C K F R D L KH
Sbjct: 2 KFACPECPKRFMRSDHLSKHIT 23
Score = 27.2 bits (60), Expect = 2.1
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 777 CKICNRTFTRNYNLKKHMKT 796
C C + F R+ +L KH+
Sbjct: 5 CPECPKRFMRSDHLSKHITL 24
Score = 25.6 bits (56), Expect = 6.2
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 181 KYTCEICAKEFTRVYELNIHKKLHED 206
K+ C C K F R L+ H LHE
Sbjct: 2 KFACPECPKRFMRSDHLSKHITLHEL 27
>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide
repeat protein, fluroquinolone resistance, DNA gyrase,
DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP:
b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A
Length = 186
Score = 32.4 bits (75), Expect = 0.34
Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 12/70 (17%)
Query: 71 HQRLKLHECDLCGKNFSQRN----NLKRQANGSNVNNRFSSNAELNKHSSAIHQRLKLHE 126
H + + +C+ G++F + + +A S + F S L + + H+
Sbjct: 3 HMQ-QWVDCEFTGRDFRDEDLSRLHT-ERAMFSECD--F-SGVNL---AESQHRGSAFRN 54
Query: 127 CDLCGKNFSQ 136
C
Sbjct: 55 CTFERTTLWH 64
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 32.3 bits (73), Expect = 0.46
Identities = 10/53 (18%), Positives = 16/53 (30%), Gaps = 7/53 (13%)
Query: 204 HEDESVANQLKCEFCGKVFLKKSNLKAHIEN-NHLDYSCLECKAVGEEISFDT 255
++ L C C + +E + D C C V + DT
Sbjct: 13 RRGPNLNIVLTCPECKVY---PPKI---VERFSEGDVVCALCGLVLSDKLVDT 59
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 28.9 bits (65), Expect = 0.52
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Query: 214 KCEF--CGKVFLKKSNLKAHI 232
C CGKV+ K S+L+AH+
Sbjct: 10 ICHIQGCGKVYGKTSHLRAHL 30
Score = 27.7 bits (62), Expect = 1.2
Identities = 9/27 (33%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 120 QRLKLHECDL--CGKNFSQRNNLKRHL 144
+ K H C + CGK + + ++L+ HL
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHL 30
Score = 25.4 bits (56), Expect = 9.5
Identities = 7/20 (35%), Positives = 11/20 (55%), Gaps = 1/20 (5%)
Query: 668 CDKTFTRKDSLKKHIRIFHT 687
C K + + L+ H+R HT
Sbjct: 16 CGKVYGKTSHLRAHLRW-HT 34
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 28.1 bits (62), Expect = 0.89
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 665 CTLCDKTFTRKDSLKKHIR 683
C C K F R D+L KHI+
Sbjct: 5 CPACPKRFMRSDALSKHIK 23
Score = 27.4 bits (60), Expect = 1.9
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
C C K F R D+L KH++
Sbjct: 4 ACPACPKRFMRSDALSKHIK 23
>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein,
helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis}
SCOP: g.37.1.4 g.37.1.4
Length = 127
Score = 29.9 bits (66), Expect = 1.2
Identities = 13/93 (13%), Positives = 28/93 (30%), Gaps = 2/93 (2%)
Query: 10 KSHEYVENHMCELCYKVFESRENLMRHL--KIHDDKESKRFKCEQCDKRFSSNAELNKHS 67
++ + C++C V S + H + H +K + Q + + +
Sbjct: 25 ENSHIFSDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAPA 84
Query: 68 SAIHQRLKLHECDLCGKNFSQRNNLKRQANGSN 100
+ C +C FS + G
Sbjct: 85 EISDGEDRSKCCPVCNMTFSSPVVAESHYIGKT 117
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.9 bits (61), Expect = 1.3
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 123 KLHECDLCGKNFSQRNNLKRHLEEVHRTDG 152
K H CD+CGK F + LK H + +H DG
Sbjct: 8 KTHLCDMCGKKFKSKGTLKSH-KLLHTADG 36
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin
remodeling, DNA binding protein/DNA complex; HET: DNA;
NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB:
1yuj_A*
Length = 54
Score = 28.3 bits (62), Expect = 1.3
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 127 CDLCGKNFSQRNNLKRHLEEVH 148
C +C Q NL+RHLE H
Sbjct: 27 CPICYAVIRQSRNLRRHLELRH 48
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 28.2 bits (62), Expect = 1.4
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 123 KLHECDLCGKNFSQRNNLKRHLEEVHRTD 151
K + CD+CGK + R L H H +
Sbjct: 6 KPYACDICGKRYKNRPGLSYHYAHSHLAE 34
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 27.4 bits (60), Expect = 1.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 18 HMCELCYKVFESRENLMRHLKIHDD 42
+C +C F ++ N RHLK+H D
Sbjct: 8 FVCRICLSAFTTKANCARHLKVHTD 32
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 30.6 bits (68), Expect = 1.8
Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 13/71 (18%)
Query: 174 LLIHNGPKYTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHIE 233
L + Y K + + IH+ L E +L+ E +V +L+ I
Sbjct: 178 LRVWYSEDY-----MKRLHSMSQETIHRNLARGEK---RLQREKSEQVLDNPEDLRGPIH 229
Query: 234 NNHLDYSCLEC 244
S L
Sbjct: 230 -----LSVLRQ 235
Score = 30.6 bits (68), Expect = 1.8
Identities = 6/39 (15%), Positives = 15/39 (38%)
Query: 8 HIKSHEYVENHMCELCYKVFESRENLMRHLKIHDDKESK 46
H + E +V ++ E+L + + ++ K
Sbjct: 199 HRNLARGEKRLQREKSEQVLDNPEDLRGPIHLSVLRQGK 237
Score = 29.0 bits (64), Expect = 5.7
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 27 FESRENLMRHLKIHDDKE--SKRFKCEQCDKRFSSNAELNKH 66
+ R + M IH + KR + E+ ++ + +L
Sbjct: 186 YMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGP 227
Score = 29.0 bits (64), Expect = 6.4
Identities = 8/78 (10%), Positives = 19/78 (24%), Gaps = 6/78 (7%)
Query: 227 NLKAHIENNHLDYSCLECKAVGEEI------SFDTKKNLLLHLKTKHKNVISNVYLTCLI 280
NL A + + + GE + + + + + L
Sbjct: 154 NLLAFQHSERIYFRACRDIRPGEWLRVWYSEDYMKRLHSMSQETIHRNLARGEKRLQREK 213
Query: 281 CFKTFLTEVDLGKHMKMH 298
+ DL + +
Sbjct: 214 SEQVLDNPEDLRGPIHLS 231
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 27.6 bits (60), Expect = 2.1
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 557 SGHEIKSRIPCELCYKTFTRKDSLRKHMKIFH 588
SG + C +C F RKD + H++
Sbjct: 3 SGSSGEKPYSCPVCGLRFKRKDRMSYHVRSHD 34
Score = 27.6 bits (60), Expect = 2.2
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 714 RCELCDKSFTRKDSLKKHNRIFHGG 738
C +C F RKD + H R G
Sbjct: 12 SCPVCGLRFKRKDRMSYHVRSHDGS 36
Score = 26.4 bits (57), Expect = 5.4
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 664 PCTLCDKTFTRKDSLKKHIRIFHTQNQ 690
C +C F RKD + H+R
Sbjct: 12 SCPVCGLRFKRKDRMSYHVRSHDGSVG 38
Score = 25.6 bits (55), Expect = 8.3
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 298 HMDDNQIQCRFCNKYFSRNYNLKQHMKTCTKNVSN 332
+ C C F R + H+++ +V
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGK 39
Score = 25.6 bits (55), Expect = 9.9
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 507 QCRICSKTFTRKDSLRKHMR 526
C +C F RKD + H+R
Sbjct: 12 SCPVCGLRFKRKDRMSYHVR 31
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A
{Saccharomyces cerevisiae} PDB: 3to6_A* 1fy7_A* 1mja_A*
1mjb_A* 3to9_A* 1mj9_A*
Length = 276
Score = 30.3 bits (68), Expect = 2.3
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 306 CRFCNKYFSRNYNLKQHMKTCT 327
F +YF +++ K CT
Sbjct: 39 DDFTLQYFGSKKQYERYRKKCT 60
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 27.1 bits (59), Expect = 2.8
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 46 KRFKCEQCDKRFSSNAELNKHSSAIHQR 73
K FKC +C+K FS + L +H IH R
Sbjct: 11 KCFKCNKCEKTFSCSKYLTQHER-IHTR 37
Score = 26.7 bits (58), Expect = 4.1
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 298 HMDDNQIQCRFCNKYFSRNYNLKQHMKTCTKNVSNG 333
+ +C C K FS + L QH + T+ V +G
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGVKSG 42
Score = 25.6 bits (55), Expect = 9.6
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 557 SGHEIKSRIPCELCYKTFTRKDSLRKHMKIFHTR 590
S + + C C KTF+ L +H +I HTR
Sbjct: 5 SSGQKEKCFKCNKCEKTFSCSKYLTQHERI-HTR 37
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 26.6 bits (58), Expect = 2.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNGPK 181
+ C C + A +L+RH+ IH G K
Sbjct: 4 YVCIHCQRQFADPGALQRHVRIHTGEK 30
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex,
hydrolase-transcription regulator-Pro binding complex,
acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae}
PDB: 3mhh_A 3m99_A
Length = 476
Score = 30.3 bits (68), Expect = 2.9
Identities = 30/173 (17%), Positives = 46/173 (26%), Gaps = 49/173 (28%)
Query: 198 NIHKKLHEDESVANQLKCEFCGKVFLKKSNLKAHIENNHLDYSCLECKAVGEEISFDTKK 257
I E N +KC C + N+ + CL+C G
Sbjct: 34 YILNHSVPKEKFLNTMKCGTCHE------------INSGATFMCLQCGFCG----CWNHS 77
Query: 258 NLLLHLKTKHKNVISNVYLTCLICFK--TFLTEVDLGKHMKMHMDDNQ------------ 303
+ L H K N L CFK ++ +DL + +
Sbjct: 78 HFLSHSKQIGHIFGINSNNGLLFCFKCEDYIGNIDLINDAILAKYWDDVCTKTMVPSMER 137
Query: 304 -------------------IQCRFCNKYFSRNYNLKQHMKTCTKNVSNGILNC 337
+QC N YF R+ + H C + +C
Sbjct: 138 RDGLSGLINMGSTCFMSSILQCLIHNPYFIRHSMSQIHSNNCKVRSPDKCFSC 190
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain
associated with ring and TRAF domains protein 1,
malignant 62; NMR {Homo sapiens}
Length = 76
Score = 28.0 bits (62), Expect = 3.1
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 290 DLGKHMKMHMDDNQIQCRFCNKYFSRNYNLKQHMKTCTK 328
DL H++ +++C FC FS + H C +
Sbjct: 31 DLPAHLQHDCPKRRLKCEFCGCDFSGE-AYESHEGMCPQ 68
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G
consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Length = 284
Score = 30.0 bits (67), Expect = 3.4
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 306 CRFCNKYFSRNYNLKQHMKTCT 327
C FC KY L+QHMK C
Sbjct: 44 CEFCLKYMKSRTILQQHMKKCG 65
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR
{Xenopus laevis} SCOP: g.37.1.1
Length = 27
Score = 26.3 bits (57), Expect = 3.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 714 RCELCDKSFTRKDSLKKHNRI 734
+C LC++SF K +L +H R+
Sbjct: 3 KCGLCERSFVEKSALSRHQRV 23
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 26.7 bits (58), Expect = 3.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 121 RLKLHECDLCGKNFSQRNNLKRH 143
R K H+C CG+ F Q +L H
Sbjct: 9 REKSHQCRECGEIFFQYVSLIEH 31
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 26.3 bits (58), Expect = 4.7
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 277 TCLICFKTFLTEVDLGKHMKMH 298
TC C + F + LG HM +H
Sbjct: 8 TCSFCKREFRSAQALGGHMNVH 29
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 28.1 bits (62), Expect = 5.1
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 306 CRFCNKYFSRNYNLKQHMKT 325
C C +YF + NLK H ++
Sbjct: 53 CLACARYFIDSTNLKTHFRS 72
>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras
cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB:
3psz_A
Length = 216
Score = 29.0 bits (65), Expect = 5.2
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 13/73 (17%)
Query: 72 QRLKLHECDLCGKNFSQRNNLK----RQANGSNVNNRFS----SNAELNKHSSAIHQRLK 123
L L EC +F R + + + + + F + A+ S + L+
Sbjct: 33 SWLDLAECRFVDCSFYDRESEQSCLLQGCDLREAS--FLRCDLTMADC---SRSQCLGLE 87
Query: 124 LHECDLCGKNFSQ 136
L +C G NFS+
Sbjct: 88 LRDCQALGINFSR 100
Score = 28.6 bits (64), Expect = 6.2
Identities = 11/66 (16%), Positives = 18/66 (27%), Gaps = 13/66 (19%)
Query: 76 LHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRLKLHECDLCGKNFS 135
+ + G F Q+ +L F L L EC +F
Sbjct: 2 IXDXCFEGVRFEQQ-DL-EGEQFQGCR--F-IGCNF--------SWLDLAECRFVDCSFY 48
Query: 136 QRNNLK 141
R + +
Sbjct: 49 DRESEQ 54
>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P;
2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A
Length = 627
Score = 29.3 bits (65), Expect = 5.8
Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 2/72 (2%)
Query: 67 SSAIHQRLKLHECDLCGKNFSQRNNLKRQANGSNVNNRFSSNAELNKHSSAIHQRLKLHE 126
SS KL + L K + SN + R + +++ S +
Sbjct: 13 SSPADWAKKLTDAVLRQKAGETLTA--ADRDFSNADFRNITFSKILPPSFMERDGDIIKG 70
Query: 127 CDLCGKNFSQRN 138
+ F+ +
Sbjct: 71 FNFSNSKFTYSD 82
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 26.0 bits (56), Expect = 6.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 44 ESKRFKCEQCDKRFSSNAELNKHSSAIH 71
+ F C +CD RFS A L +H+ H
Sbjct: 7 GNGAFFCNECDCRFSEEASLKRHTLQTH 34
>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral
beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A
Length = 200
Score = 28.6 bits (65), Expect = 6.5
Identities = 11/84 (13%), Positives = 27/84 (32%), Gaps = 17/84 (20%)
Query: 59 SNAELNKHSSAIHQRLKLHECDLCGKNFSQRN----NLKRQANGSNVNNRFS--SNAELN 112
S + + ++ +C + G N++ ++ + S L
Sbjct: 62 SLISIPQ---TSFMEVRFVDCKMLGVNWTSAQWPSVKMEGALSFERCILNDSLFYGLYLA 118
Query: 113 KHSSAIHQRLKLHECDLCGKNFSQ 136
+K+ EC + NF++
Sbjct: 119 G--------VKMVECRIHDANFTE 134
Score = 28.2 bits (64), Expect = 8.2
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 11/64 (17%)
Query: 76 LHECDLCGKNFSQRNNLKRQANGSNVNNRFS----SNAELNKHSSAIHQRLKLHECDLCG 131
L D CG++F + + ++ F + A R K EC+
Sbjct: 6 LESKDYCGESFVSE-DR-SGQSLESIR--FEDCTFRQCNF---TEAELNRCKFRECEFVD 58
Query: 132 KNFS 135
N S
Sbjct: 59 CNLS 62
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 25.5 bits (55), Expect = 7.0
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 155 FECYVCSKVLATSHSLKRHLLIHNG 179
+ C VC K + H ++ H +H G
Sbjct: 4 YSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 25.1 bits (54), Expect = 10.0
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 182 YTCEICAKEFTRVYELNIHKKLH 204
Y+C +C K F+ +++ H ++H
Sbjct: 4 YSCSVCGKRFSLKHQMETHYRVH 26
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics,
structural genomics consortium, SGC; HET: COA; 1.45A
{Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A*
3tob_A*
Length = 278
Score = 28.8 bits (64), Expect = 7.2
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 306 CRFCNKYFSRNYNLKQHMKTCT 327
C +C KY + + H+ C
Sbjct: 39 CEYCLKYMKYEKSYRFHLGQCQ 60
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 25.7 bits (56), Expect = 7.2
Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 182 YTCEI--CAKEFTRVYELNIHKKLHEDES 208
Y+C+ C K F R ++L HKK H++++
Sbjct: 4 YSCDHPGCDKAFVRNHDLIRHKKSHQEKA 32
Score = 25.4 bits (55), Expect = 8.6
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 309 CNKYFSRNYNLKQHMKTCTKN 329
C+K F RN++L +H K+ +
Sbjct: 11 CDKAFVRNHDLIRHKKSHQEK 31
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural
genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo
sapiens}
Length = 280
Score = 28.8 bits (64), Expect = 7.2
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 306 CRFCNKYFSRNYNLKQHMKTCT 327
C FC KY L++H+ C
Sbjct: 37 CEFCLKYGRSLKCLQRHLTKCD 58
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.6 bits (55), Expect = 7.4
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 150 TDGMKFECYVCSKVLATSHSLKRHLLIHNGPK 181
+ G ++C CS A +L HL H G K
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>3ung_C CMR2DHD; ferredoxin fold, nucleotide-binding, polymerase, CMR
complex function; HET: ADP; 2.31A {Pyrococcus furiosus}
PDB: 3ur3_C 4doz_A
Length = 693
Score = 28.9 bits (63), Expect = 9.6
Identities = 22/167 (13%), Positives = 57/167 (34%), Gaps = 4/167 (2%)
Query: 104 RFSSNAELNKHSSAIHQRLKLHECDLCGKNFSQRNNLKRHLEEVHRTDGMKFECYVCSKV 163
++ + ++LK +C +CG+N + ++ H + C +C
Sbjct: 247 DSLGERKVTEERFEKSEQLKGWKCHVCGENLAIFGDMYDHDNLKSLWLDEEPLCPMCLIK 306
Query: 164 LATSHSLKRHLLIHNGPKYTCEICAKEFTRVYELNIHKKLHEDESVANQLKCEFCGKVFL 223
++ + + A + ++ K + S A ++ +F L
Sbjct: 307 RYYPVWIRSKTGQKIRFESVVD-VALLYKNWRKIFDEKYGKDLVSKAREVSEDFVKDNML 365
Query: 224 KKSNLKAHIENNHLDYSCLECKAVGEEISFDTKKNLLLHLKTKHKNV 270
S+L ++ + + +EI + K ++ L +K +
Sbjct: 366 VDSDL---YYSSTWESGLSKKLKNKKEIDEEKVKEVVDFLNAAYKEI 409
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.383
Gapped
Lambda K H
0.267 0.0503 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,120,220
Number of extensions: 720364
Number of successful extensions: 5398
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4645
Number of HSP's successfully gapped: 2013
Length of query: 843
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 741
Effective length of database: 3,853,851
Effective search space: 2855703591
Effective search space used: 2855703591
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.8 bits)