BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8172
         (98 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3UFB|A Chain A, Crystal Structure Of A Modification Subunit Of A Putative
           Type I Restriction Enzyme From Vibrio Vulnificus Yj016
          Length = 530

 Score = 28.5 bits (62), Expect = 0.95,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 4   LMNSNLQPPDPKSTVLTTTDYTSEVGFWKQTTRPSNTALSSMEQVKAYLQTQGTCK 59
           L++ NL   +P S  L   ++   +   ++ T    + L+ +EQ+KA + TQG  K
Sbjct: 477 LIDVNLDRKNPNS--LEVLEHEEPMDLIEKITTKEESLLAILEQIKAEISTQGISK 530


>pdb|1AYE|A Chain A, Human Procarboxypeptidase A2
          Length = 401

 Score = 27.3 bits (59), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 5/35 (14%)

Query: 27 EVGFWKQTTRPSNTA-----LSSMEQVKAYLQTQG 56
          ++ FWK  T P  TA       +++ VK +L++QG
Sbjct: 33 QLDFWKSPTTPGETAHVRVPFVNVQAVKVFLESQG 67


>pdb|1O6X|A Chain A, Nmr Solution Structure Of The Activation Domain Of Human
          Procarboxypeptidase A2
          Length = 81

 Score = 26.6 bits (57), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 5/37 (13%)

Query: 27 EVGFWKQTTRPSNTA-----LSSMEQVKAYLQTQGTC 58
          ++ FWK  T P  TA       +++ VK +L++QG  
Sbjct: 36 QLDFWKSPTTPGETAHVRVPFVNVQAVKVFLESQGIA 72


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.127    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,767,585
Number of Sequences: 62578
Number of extensions: 85025
Number of successful extensions: 103
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 103
Number of HSP's gapped (non-prelim): 4
length of query: 98
length of database: 14,973,337
effective HSP length: 64
effective length of query: 34
effective length of database: 10,968,345
effective search space: 372923730
effective search space used: 372923730
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)