BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8172
         (98 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q96DN6|MBD6_HUMAN Methyl-CpG-binding domain protein 6 OS=Homo sapiens GN=MBD6 PE=2
          SV=2
          Length = 1003

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/39 (64%), Positives = 30/39 (76%)

Query: 37 PSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFD 75
          PS T LSS+EQ ++YL + GTCKCGLECPL    VF+FD
Sbjct: 39 PSGTELSSLEQTRSYLLSDGTCKCGLECPLNVPKVFNFD 77


>sp|Q3TY92|MBD6_MOUSE Methyl-CpG-binding domain protein 6 OS=Mus musculus GN=Mbd6 PE=2
          SV=2
          Length = 1003

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 25/39 (64%), Positives = 30/39 (76%)

Query: 37 PSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFD 75
          PS T LSS+EQ ++YL + GTCKCGLECPL    VF+FD
Sbjct: 41 PSGTELSSLEQTRSYLLSDGTCKCGLECPLNVPKVFNFD 79


>sp|Q9P267|MBD5_HUMAN Methyl-CpG-binding domain protein 5 OS=Homo sapiens GN=MBD5 PE=1
          SV=3
          Length = 1494

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/50 (58%), Positives = 34/50 (68%), Gaps = 2/50 (4%)

Query: 37 PSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFD--AKPRERATE 84
          PS + LS +EQVK YL T GTCKCGLECPL    VF+FD  A  ++R  E
Sbjct: 39 PSGSLLSCLEQVKTYLLTDGTCKCGLECPLILPKVFNFDPGAAVKQRTAE 88


>sp|B1AYB6|MBD5_MOUSE Methyl-CpG-binding domain protein 5 OS=Mus musculus GN=Mbd5 PE=2
          SV=1
          Length = 1498

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 34/50 (68%), Gaps = 2/50 (4%)

Query: 37 PSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFD--AKPRERATE 84
          PS + LS ++QVK YL T GTCKCGLECPL    VF+FD  A  ++R  E
Sbjct: 39 PSGSLLSCLDQVKTYLLTDGTCKCGLECPLILPKVFNFDPGAAVKQRTAE 88


>sp|Q975Z6|GATB_SULTO Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
           OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 /
           NBRC 100140 / 7) GN=gatB PE=3 SV=2
          Length = 473

 Score = 32.3 bits (72), Expect = 0.78,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 9/86 (10%)

Query: 14  PKSTVLTTT----DYT-SEVGFWKQTTRPSNT----ALSSMEQVKAYLQTQGTCKCGLEC 64
           P  ++LT+     DY  S +G  +  T P  T    A   +E++++ L+  G C C LE 
Sbjct: 133 PTGSMLTSKYTLLDYNRSGMGLLEIVTEPDMTEPKEAREFLEKLRSILEHLGVCNCDLEG 192

Query: 65  PLQCDSVFSFDAKPRERATEVHEPSE 90
            ++ D+  S +   R     +  P E
Sbjct: 193 AMRADANVSVEGGERVEIKNIGSPRE 218


>sp|Q8NHK3|KI2LB_HUMAN Killer cell immunoglobulin-like receptor 2DL5B OS=Homo sapiens
           GN=KIR2DL5B PE=2 SV=1
          Length = 375

 Score = 30.4 bits (67), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 18/42 (42%)

Query: 57  TCKCGLECPLQCDSVFSFDAKPRERATEVHEPSEPAVCDLDN 98
           T + G    L C S  SFD     R    HEP  PAV  +D 
Sbjct: 133 TVRTGENVALSCSSRSSFDMYHLSREGRAHEPRLPAVPSVDG 174


>sp|O64827|SUVR5_ARATH Histone-lysine N-methyltransferase SUVR5 OS=Arabidopsis thaliana
            GN=SUVR5 PE=1 SV=3
          Length = 1382

 Score = 29.3 bits (64), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 31   WKQTTRPSNTALS-SMEQVKAYLQTQGTCKCGLECPLQCDSVFSF 74
            W+  T  +N+ L  SM+ VK  LQ + +C+  +  P+ CD V+ F
Sbjct: 1121 WECFTYVTNSILHPSMDLVKENLQLRCSCRSSVCSPVTCDHVYLF 1165


>sp|Q980Q3|GATB_SULSO Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
           OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617
           / JCM 11322 / P2) GN=gatB PE=3 SV=2
          Length = 472

 Score = 29.3 bits (64), Expect = 6.8,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 25/55 (45%)

Query: 36  RPSNTALSSMEQVKAYLQTQGTCKCGLECPLQCDSVFSFDAKPRERATEVHEPSE 90
           R +  A   +E++++ L+  G C CG+E  ++ D   S     R     V  P +
Sbjct: 163 RSAKEARFFLEKLRSILEHLGVCDCGIEGAMKADVNISVKGGERVEVKNVGSPKD 217


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.127    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,098,507
Number of Sequences: 539616
Number of extensions: 1066556
Number of successful extensions: 1849
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1843
Number of HSP's gapped (non-prelim): 10
length of query: 98
length of database: 191,569,459
effective HSP length: 67
effective length of query: 31
effective length of database: 155,415,187
effective search space: 4817870797
effective search space used: 4817870797
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)