RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8172
         (98 letters)



>3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein
           structure initiati northeast structural genomics
           consortium, hydrolase; 2.70A {Lactobacillus brevis}
          Length = 745

 Score = 25.8 bits (56), Expect = 3.2
 Identities = 5/26 (19%), Positives = 12/26 (46%)

Query: 3   ALMNSNLQPPDPKSTVLTTTDYTSEV 28
            LMN+    P   +    + D+ +++
Sbjct: 706 ELMNAGYFVPTILADGQESKDFYTQL 731


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 25.2 bits (54), Expect = 4.5
 Identities = 15/87 (17%), Positives = 23/87 (26%), Gaps = 20/87 (22%)

Query: 13  DPKSTVLTTTDYTSEVGFWKQTTRPSNTALSSMEQVKAYLQTQGT---CKCGLECPLQCD 69
           +    +L TT +     F    T    T +S           +      K  L+C  Q  
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATT---THISLDHHSMTLTPDEVKSLLLKY-LDCRPQDL 318

Query: 70  SVFSFDAKPRERATEVHEPSEPAVCDL 96
                   PRE     +    P    +
Sbjct: 319 --------PRE-VLTTN----PRRLSI 332


>1onq_A T-cell surface glycoprotein CD1A; protein-glycolipid complex, beta
           sheet platform,, immune SYS; HET: NAG FUC SLF; 2.15A
           {Homo sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 1xz0_A*
          Length = 283

 Score = 24.5 bits (54), Expect = 7.3
 Identities = 5/27 (18%), Positives = 7/27 (25%), Gaps = 2/27 (7%)

Query: 32  KQTTRPSNTALSSMEQVKAYLQTQGTC 58
           K   +  N      +     L    TC
Sbjct: 142 KHFCKVLNQNQHENDITHNLL--SDTC 166


>1goi_A Chitinase B; chitin degradation, hydrolase, glycosidase; 1.45A
           {Serratia marcescens} SCOP: b.72.2.1 c.1.8.5 d.26.3.1
           PDB: 1o6i_A* 1e6r_A* 1e15_A 1gpf_A* 1ur8_A* 1w1p_A*
           1w1t_A* 1w1v_A* 1w1y_A* 1e6p_A 1e6n_A 1h0g_A* 1h0i_A*
           1ogb_A 1ogg_A* 1e6z_A* 1ur9_A*
          Length = 499

 Score = 24.5 bits (53), Expect = 7.4
 Identities = 8/53 (15%), Positives = 14/53 (26%), Gaps = 2/53 (3%)

Query: 6   NSNL--QPPDPKSTVLTTTDYTSEVGFWKQTTRPSNTALSSMEQVKAYLQTQG 56
            + L      P                      PS  +L+    V+ +L  +G
Sbjct: 227 QAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEG 279


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.314    0.127    0.387 

Gapped
Lambda     K      H
   0.267   0.0537    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,283,092
Number of extensions: 52292
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 6
Length of query: 98
Length of database: 6,701,793
Length adjustment: 64
Effective length of query: 34
Effective length of database: 4,914,849
Effective search space: 167104866
Effective search space used: 167104866
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.9 bits)