RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8172
         (98 letters)



>d2p3ra2 c.55.1.4 (A:254-500) Glycerol kinase {Escherichia coli
          [TaxId: 562]}
          Length = 247

 Score = 23.3 bits (49), Expect = 6.3
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 2  FALMNSNLQPPDPKSTVLTTTDY 24
          F LMN+  +    ++ +LTT   
Sbjct: 17 FMLMNTGEKAVKSENGLLTTIAC 39


>d1v31a_ a.42.1.1 (A:) Hypothetical protein AT5G14170
          (rafl11-05-p19) {Thale cress (Arabidopsis thaliana)
          [TaxId: 3702]}
          Length = 93

 Score = 22.4 bits (48), Expect = 8.5
 Identities = 4/17 (23%), Positives = 8/17 (47%)

Query: 1  MFALMNSNLQPPDPKST 17
          +   ++ +L PP P   
Sbjct: 74 VSQKISHHLSPPPPSGP 90


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.127    0.387 

Gapped
Lambda     K      H
   0.267   0.0461    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 316,716
Number of extensions: 10629
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 4
Length of query: 98
Length of database: 2,407,596
Length adjustment: 60
Effective length of query: 38
Effective length of database: 1,583,796
Effective search space: 60184248
Effective search space used: 60184248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.5 bits)