BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy8176
         (159 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2V5F|A Chain A, Crystal Structure Of Wild Type Peptide-Binding Domain Of
           Human Type I Collagen Prolyl 4-Hydroxylase
          Length = 104

 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/58 (46%), Positives = 40/58 (68%), Gaps = 1/58 (1%)

Query: 100 LTASDCFELGRQSYNTQDFYHTALWMGEALKRHDMERNGTSTPKWEILEYLAYSKFMQ 157
           LTA DCFELG+ +Y   D+YHT LWM +AL++ D E   ++  K  +L+YL+Y+ + Q
Sbjct: 3   LTAEDCFELGKVAYTEADYYHTELWMEQALRQLD-EGEISTIDKVSVLDYLSYAVYQQ 59


>pdb|1TJC|A Chain A, Crystal Structure Of Peptide-Substrate-Binding Domain Of
           Human Type I Collagen Prolyl 4-Hydroxylase
 pdb|1TJC|B Chain B, Crystal Structure Of Peptide-Substrate-Binding Domain Of
           Human Type I Collagen Prolyl 4-Hydroxylase
          Length = 108

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 1/58 (1%)

Query: 100 LTASDCFELGRQSYNTQDFYHTALWMGEALKRHDMERNGTSTPKWEILEYLAYSKFMQ 157
           LTA D FELG+ +Y   D+YHT LWM +AL++ D E   ++  K  +L+YL+Y+ + Q
Sbjct: 3   LTAEDSFELGKVAYTEADYYHTELWMEQALRQLD-EGEISTIDKVSVLDYLSYAVYQQ 59


>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
           Methionyl-Trna Synthetase In Complex With Methionine And
           Adenosine
 pdb|2X1L|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
           Methionyl-Trna Synthetase In Complex With Methionine And
           Adenosine
 pdb|2X1L|C Chain C, Crystal Structure Of Mycobacterium Smegmatis
           Methionyl-Trna Synthetase In Complex With Methionine And
           Adenosine
 pdb|2X1M|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
           Methionyl-Trna Synthetase In Complex With Methionine
          Length = 524

 Score = 27.7 bits (60), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 19/45 (42%)

Query: 22  LVVKRLTLDWKQAEHYMKDHVYQEAMDNMTRYKQDLKFPTDEDLS 66
           L + R T DW        DHV    +D +T Y   + FP  E  S
Sbjct: 215 LSISRTTFDWGVPVPDHPDHVMYVWVDALTNYLTGVGFPDTESES 259


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.130    0.385 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,809,766
Number of Sequences: 62578
Number of extensions: 180286
Number of successful extensions: 384
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 379
Number of HSP's gapped (non-prelim): 7
length of query: 159
length of database: 14,973,337
effective HSP length: 91
effective length of query: 68
effective length of database: 9,278,739
effective search space: 630954252
effective search space used: 630954252
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)