RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy8176
         (159 letters)



>gnl|CDD|203913 pfam08336, P4Ha_N, Prolyl 4-Hydroxylase alpha-subunit, N-terminal
           region.  The members of this family are eukaryotic
           proteins, and include all three isoforms of the prolyl
           4-hydroxylase alpha subunit. This enzyme (EC:1.14.11.2)
           is important in the post-translational modification of
           collagen, as it catalyzes the formation of
           4-hydroxyproline. In vertebrates, the complete enzyme is
           an alpha2-beta2 tetramer; the beta-subunit is identical
           to protein disulphide isomerase. The function of the
           N-terminal region featured in this family does not seem
           to be known.
          Length = 134

 Score =  115 bits (289), Expect = 1e-33
 Identities = 48/93 (51%), Positives = 63/93 (67%), Gaps = 2/93 (2%)

Query: 2   EHAEAAKDVPEYLANPINAFLVVKRLTLDWKQAEHYMKDHVYQEAMDNMTRYKQDLKFPT 61
           EH +A  D  EYL NP+NAF ++KRL  DW + E+YM+  V +E + N+   ++    PT
Sbjct: 44  EHEKAKSDPEEYLGNPLNAFSLIKRLHTDWPKLENYMEKDVGEELIKNLEELRK--SLPT 101

Query: 62  DEDLSGAATALLRLQDTYKLETASVARGELNGV 94
           DEDL GAA ALLRLQDTY L+   +A+G LNGV
Sbjct: 102 DEDLEGAARALLRLQDTYNLDPKDLAKGVLNGV 134


>gnl|CDD|237626 PRK14154, PRK14154, heat shock protein GrpE; Provisional.
          Length = 208

 Score = 27.9 bits (61), Expect = 2.1
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 50  MTRYKQDLKFPTDEDLSGAATALLRLQDTYKLETASVARGELNGVQYTTQLTASDCFELG 109
           M  +++ L+FP+ E L G  T + R  D YK +    A+ E++ ++   +   +D  + G
Sbjct: 42  MEPHREGLEFPSREKLEGQLTRMERKVDEYKTQYLR-AQAEMDNLRKRIEREKADIIKFG 100

Query: 110 RQSYNT 115
            +   T
Sbjct: 101 SKQLIT 106


>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR
           kinase-like Protein Serine/Threonine Kinases.
           Serine/Threonine Kinases (STKs), Rho-associated
           coiled-coil containing protein kinase (ROCK) and Nuclear
           Dbf2-Related (NDR)-like kinase subfamily, catalytic (c)
           domain. STKs catalyze the transfer of the
           gamma-phosphoryl group from ATP to serine/threonine
           residues on protein substrates. The ROCK- and NDR-like
           subfamily is part of a larger superfamily that includes
           the catalytic domains of other protein STKs, protein
           tyrosine kinases, RIO kinases, aminoglycoside
           phosphotransferase, choline kinase, and phosphoinositide
           3-kinase. Members of this subfamily include ROCK and
           ROCK-like proteins such as DMPK, MRCK, and CRIK, as well
           as NDR and NDR-like proteins such as LATS, CBK1 and
           Sid2p. ROCK and CRIK are effectors of the small GTPase
           Rho, while MRCK is an effector of the small GTPase
           Cdc42. NDR and NDR-like kinases contain an N-terminal
           regulatory (NTR) domain and an insert within the
           catalytic domain that contains an auto-inhibitory
           sequence. Proteins in this subfamily are involved in
           regulating many cellular functions including
           contraction, motility, division, proliferation,
           apoptosis, morphogenesis, and cytokinesis.
          Length = 350

 Score = 26.9 bits (60), Expect = 5.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 44  QEAMDNMTRYKQDLKFPTDEDLSGAATALLR 74
           QE  + +  +K+ L+FP D  +S  A  L+ 
Sbjct: 236 QETYNKIINWKESLRFPPDPPVSPEAIDLIC 266


>gnl|CDD|140258 PTZ00231, PTZ00231, variable surface protein Vir17; Provisional.
          Length = 385

 Score = 26.4 bits (58), Expect = 8.8
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 123 LWMGEALKRHDMERNGTSTPKWEILEYLAYSKFMQ 157
           LW+ E    H ++++  S  +W+ +E L ++K MQ
Sbjct: 76  LWLDEQKSTHVIDKSIVSEEEWQKVENL-WNKLMQ 109


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.316    0.130    0.385 

Gapped
Lambda     K      H
   0.267   0.0728    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,891,931
Number of extensions: 670255
Number of successful extensions: 486
Number of sequences better than 10.0: 1
Number of HSP's gapped: 485
Number of HSP's successfully gapped: 16
Length of query: 159
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 70
Effective length of database: 6,990,096
Effective search space: 489306720
Effective search space used: 489306720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.0 bits)