RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8176
(159 letters)
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum,
metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB:
1tjc_A
Length = 104
Score = 68.9 bits (168), Expect = 3e-16
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 100 LTASDCFELGRQSYNTQDFYHTALWMGEALKRHDMERNGTSTPKWEILEYLAYSKFMQD 158
LTA DCFELG+ +Y D+YHT LWM +AL++ D T K +L+YL+Y+ + Q
Sbjct: 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTID-KVSVLDYLSYAVYQQG 60
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.002
Identities = 24/144 (16%), Positives = 41/144 (28%), Gaps = 43/144 (29%)
Query: 19 NAFLVVKRLTLDWKQAEHYMKD-------HVYQEAMDNMT-------------RYKQDLK 58
+ + W +A+++ KD + N+T Y +
Sbjct: 1637 KTSKAAQDV---WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY-SAMI 1692
Query: 59 FPTDEDLSGAATALLRLQDTYKLETASVA----RGELNGVQYTTQ---LTASD-CFELGR 110
F T D + + + + S +G L+ Q+ TQ FE +
Sbjct: 1693 FETIVDGKLKTEKIFKEIN---EHSTSYTFRSEKGLLSATQF-TQPALTLMEKAAFEDLK 1748
Query: 111 QSYNTQDFYHTA---LWMGE--AL 129
A L GE AL
Sbjct: 1749 SKGLIPADATFAGHSL--GEYAAL 1770
Score = 28.5 bits (63), Expect = 1.2
Identities = 8/42 (19%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 3 HAEAAKDVPEYLANPINAFLV--VKRLTLDWKQAEHYMKDHV 42
D+ L+ I+ +V + RL + W+ + H+
Sbjct: 461 DTFDGSDLRV-LSGSISERIVDCIIRLPVKWETTTQFKATHI 501
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.025
Identities = 25/222 (11%), Positives = 57/222 (25%), Gaps = 70/222 (31%)
Query: 7 AKDVPE--YLANP-----INAFLVVKRLTLD-WKQAEHYMKDHVYQEAMDNMT-----RY 53
+D+P NP I + T D WK + + +++ + +
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 54 KQDLK-FPTDEDLSGAATALLRLQDTY--------KLETASVARG-------ELNGVQYT 97
L FP + +L+ KL S+ + +
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 98 TQLTASDCFELGRQ---SYNTQ------DF--------------YHTAL----------- 123
++ + + L R YN D +H
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494
Query: 124 -------WMGEALKRHDMERNGTSTPKWEILEYLAYSKFMQD 158
++ + ++ N + + + + Y ++ D
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR
family, hydrolase; 2.35A {Escherichia coli} SCOP:
b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Length = 644
Score = 29.8 bits (68), Expect = 0.40
Identities = 6/20 (30%), Positives = 9/20 (45%), Gaps = 1/20 (5%)
Query: 26 RLTLDWKQAEHYMKDHVYQE 45
R DW A ++KD +
Sbjct: 543 RDVGDWLYAR-FLKDKAGTD 561
>3mgk_A Intracellular protease/amidase related enzyme (THIJ family);
amidotranferase-like, structural genomics, PSI; 2.00A
{Clostridium acetobutylicum}
Length = 211
Score = 27.1 bits (61), Expect = 2.0
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 64 DLSGAATALLRLQDTYKLETASVARGEL---NGVQYTTQLTASDC 105
D+ G LQD ++L S G + V+ T L D
Sbjct: 19 DVFGPVEIFGNLQDDFELNFISSDGGLVESSQKVRVETSLYTRDE 63
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 26.0 bits (57), Expect = 6.6
Identities = 12/61 (19%), Positives = 17/61 (27%), Gaps = 8/61 (13%)
Query: 65 LSGAATALLRLQD--------TYKLETASVARGELNGVQYTTQLTASDCFELGRQSYNTQ 116
L D + SV R EL + ++ SDC Y+
Sbjct: 17 LCLLQVVPSINADVSGCKPGFSSAEYIFSVNRRELERGRKLGKVNFSDCTTRKHGLYDVG 76
Query: 117 D 117
D
Sbjct: 77 D 77
>3v39_A D-alanyl-D-alanine carboxypeptidase; peptidoglycan transpeptidase
fold, endopeptidase, serine MOD hepes buffer molecule,
hydrolase; HET: PGE; 1.45A {Bdellovibrio bacteriovorus}
Length = 418
Score = 25.9 bits (56), Expect = 7.0
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 68 AATALLRLQDTYKLETASVARGELNGV 94
A+ RL Y+ +T NG
Sbjct: 41 TLWAVDRLGPDYRFKTKLHVTPTANGS 67
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase,
inhibitor, transf transferase inhibitor complex; HET:
0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A*
2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A*
2h9v_A*
Length = 410
Score = 25.8 bits (57), Expect = 8.4
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 48 DNMTRYKQDLKFPTDEDLSGAATALLR 74
+ +K L FP D D+S A L+
Sbjct: 283 SKIMNHKNSLTFPDDNDISKEAKNLIC 309
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.130 0.385
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,403,288
Number of extensions: 127356
Number of successful extensions: 178
Number of sequences better than 10.0: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 14
Length of query: 159
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 73
Effective length of database: 4,300,587
Effective search space: 313942851
Effective search space used: 313942851
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)