RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8176
         (159 letters)



>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 95

 Score = 37.1 bits (85), Expect = 1e-04
 Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 100 LTASDCFELGRQSYNTQDFYHTALWMGEALKRHDMERNGTSTPKWEILEYLAYSKFMQ 157
           LTA D FELG+ +Y   D+YHT LWM E   R   E   ++  K  +L+YL+Y+ + Q
Sbjct: 3   LTAEDSFELGKVAYTEADYYHTELWM-EQALRQLDEGEISTIDKVSVLDYLSYAVYQQ 59


>d2c4ka1 c.61.1.2 (A:7-166) PRPP synthetase-associated protein 1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 160

 Score = 26.1 bits (57), Expect = 1.4
 Identities = 13/61 (21%), Positives = 17/61 (27%), Gaps = 6/61 (9%)

Query: 94  VQYTTQLTASDCFELGRQSYNTQDFYHTALWMGEALKRHDMERNGTSTPKWEILEYLAYS 153
           V+    +   D F +     +        L M  ALK           P      Y  YS
Sbjct: 43  VEIKESVRGQDIFIIQTIPRDVNTAVMELLIMAYALKTACARNIIGVIP------YFPYS 96

Query: 154 K 154
           K
Sbjct: 97  K 97


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.130    0.385 

Gapped
Lambda     K      H
   0.267   0.0642    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 573,805
Number of extensions: 23167
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 9
Length of query: 159
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 81
Effective length of database: 1,336,656
Effective search space: 108269136
Effective search space used: 108269136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.8 bits)