BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8177
(312 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|B Chain B, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|C Chain C, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
Length = 233
Score = 97.8 bits (242), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 96/192 (50%), Gaps = 19/192 (9%)
Query: 92 PRIILYRDVMYDSEIDLIKKMAQPRLRRATVQNYKTGELEIANYRISKSAWLREPEHPVI 151
PR L ++ + D E D I + A+P++ +++V + ++G+ + R S W + E VI
Sbjct: 29 PRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGEDSVI 88
Query: 152 ERISRRVEHMTGLTTSTAEELQVVNYGIGGHYEPHYD-FARPGEANAFKSLGTGNRVATV 210
+I +RV +T + E LQV++Y G YEPHYD F P NA G G RV T+
Sbjct: 89 SKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDP--VNAGPEHG-GQRVVTM 145
Query: 211 LFYMSDVAQGGATVFTSL---------------NLSLWPEKGTAAFWHNLHSSGDGDYYT 255
L Y++ V +GG TV + L++ P KG A +++L G D +
Sbjct: 146 LMYLTTVEEGGETVLPNAEQKVTGDGWSECAKRGLAVKPIKGDALMFYSLKPDGSNDPAS 205
Query: 256 RHAACPVLTGSN 267
H +CP L G
Sbjct: 206 LHGSCPTLKGDK 217
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|B Chain B, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|C Chain C, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|D Chain D, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
Length = 225
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 96/192 (50%), Gaps = 19/192 (9%)
Query: 92 PRIILYRDVMYDSEIDLIKKMAQPRLRRATVQNYKTGELEIANYRISKSAWLREPEHPVI 151
PR L ++ + D E D I + A+P++ +++V + ++G+ + R S W + E VI
Sbjct: 21 PRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGEDSVI 80
Query: 152 ERISRRVEHMTGLTTSTAEELQVVNYGIGGHYEPHYD-FARPGEANAFKSLGTGNRVATV 210
+I +RV +T + E LQV++Y G YEPHYD F P NA G G RV T+
Sbjct: 81 SKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDP--VNAGPEHG-GQRVVTM 137
Query: 211 LFYMSDVAQGGATVFTSL---------------NLSLWPEKGTAAFWHNLHSSGDGDYYT 255
L Y++ V +GG TV + L++ P KG A +++L G D +
Sbjct: 138 LMYLTTVEEGGETVLPNAEQKVTGDGWSECAKRGLAVKPIKGDALMFYSLKPDGSNDPAS 197
Query: 256 RHAACPVLTGSN 267
H +CP L G
Sbjct: 198 LHGSCPTLKGDK 209
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
pdb|2JIG|B Chain B, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
Length = 224
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 96/192 (50%), Gaps = 19/192 (9%)
Query: 92 PRIILYRDVMYDSEIDLIKKMAQPRLRRATVQNYKTGELEIANYRISKSAWLREPEHPVI 151
PR L ++ + D E D I + A+P++ +++V + ++G+ + R S W + E VI
Sbjct: 20 PRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGEDSVI 79
Query: 152 ERISRRVEHMTGLTTSTAEELQVVNYGIGGHYEPHYD-FARPGEANAFKSLGTGNRVATV 210
+I +RV +T + E LQV++Y G YEPHYD F P NA G G RV T+
Sbjct: 80 SKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDP--VNAGPEHG-GQRVVTM 136
Query: 211 LFYMSDVAQGGATVFTSL---------------NLSLWPEKGTAAFWHNLHSSGDGDYYT 255
L Y++ V +GG TV + L++ P KG A +++L G D +
Sbjct: 137 LMYLTTVEEGGETVLPNAEQKVTGDGWSECAKRGLAVKPIKGDALMFYSLKPDGSNDPAS 196
Query: 256 RHAACPVLTGSN 267
H +CP L G
Sbjct: 197 LHGSCPTLKGDK 208
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|B Chain B, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|C Chain C, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|D Chain D, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii
Length = 233
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 94/191 (49%), Gaps = 19/191 (9%)
Query: 92 PRIILYRDVMYDSEIDLIKKMAQPRLRRATVQNYKTGELEIANYRISKSAWLREPEHPVI 151
PR L ++ + D E D I + A+P+ +++V + ++G+ + R S W + E VI
Sbjct: 29 PRAFLLKNFLSDEECDYIVEKARPKXVKSSVVDNESGKSVDSEIRTSTGTWFAKGEDSVI 88
Query: 152 ERISRRVEHMTGLTTSTAEELQVVNYGIGGHYEPHYD-FARPGEANAFKSLGTGNRVATV 210
+I +RV +T + E LQV++Y G YEPHYD F P NA G G RV T
Sbjct: 89 SKIEKRVAQVTXIPLENHEGLQVLHYHDGQKYEPHYDYFHDP--VNAGPEHG-GQRVVTX 145
Query: 211 LFYMSDVAQGGATVFTSL---------------NLSLWPEKGTAAFWHNLHSSGDGDYYT 255
L Y++ V +GG TV + L++ P KG A +++L G D +
Sbjct: 146 LXYLTTVEEGGETVLPNAEQKVTGDGWSECAKRGLAVKPIKGDALXFYSLKPDGSNDPAS 205
Query: 256 RHAACPVLTGS 266
H +CP L G
Sbjct: 206 LHGSCPTLKGD 216
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
pdb|3ITQ|B Chain B, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
Length = 216
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 94/178 (52%), Gaps = 13/178 (7%)
Query: 89 YLQPRIILYRDVMYDSEIDLIKKMAQPRLRRATVQNYKTGELEIANYRISKSAWLREPEH 148
+ +P I++ +V+ D E D + ++++ +L R+ V + + ++ + R S A+L + E
Sbjct: 36 FEEPLIVVLGNVLSDEECDELIELSKSKLARSKVGSSR----DVNDIRTSSGAFLDDNE- 90
Query: 149 PVIERISRRVEHMTGLTTSTAEELQVVNYGIGGHYEPHYD-FARPGEANAFKSLGTGNRV 207
+ +I +R+ + + S E L ++NY + Y+ HYD FA + A NR+
Sbjct: 91 -LTAKIEKRISSIXNVPASHGEGLHILNYEVDQQYKAHYDYFAEHSRSAA------NNRI 143
Query: 208 ATVLFYMSDVAQGGATVFTSLNLSLWPEKGTAAFWHNLHSSGDGDYYTRHAACPVLTG 265
+T++ Y++DV +GG T F LNLS+ P KG A ++ + + T H PV G
Sbjct: 144 STLVXYLNDVEEGGETFFPKLNLSVHPRKGXAVYFEYFYQDQSLNELTLHGGAPVTKG 201
>pdb|1B8A|A Chain A, Aspartyl-trna Synthetase
pdb|1B8A|B Chain B, Aspartyl-trna Synthetase
Length = 438
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 80 LMPLK--EEEAYLQPRIILYRDVMYDSEIDLIKKMAQPRLRRATVQNYKTGELEIANYRI 137
L P+K EE+A+L LY+++M S +D + ++A + RA N T L A + I
Sbjct: 175 LFPMKYFEEDAFLAESPQLYKEIMMASGLDRVYEIAP--IFRAEEHN-TTRHLNEA-WSI 230
Query: 138 SKSAWLREPEHPVIERISRRVEHMTG-LTTSTAEELQVVNYGIGGHYEPHYDFARPGEAN 196
E E V+ + R V H + A+EL ++N+ + EP F R
Sbjct: 231 DSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELE---EPKLPFPRVSYDK 287
Query: 197 AFKSLG 202
A + LG
Sbjct: 288 ALEILG 293
>pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEL|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartic Acid
pdb|3NEM|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEM|B Chain B, Aspartyl-Trna Synthetase Complexed With Aspartyl Adenylate
pdb|3NEN|A Chain A, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
pdb|3NEN|B Chain B, Unliganded Aspartyl-Trna Synthetase From Thermococcus
Kodakarensis
Length = 438
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 10/126 (7%)
Query: 80 LMPLK--EEEAYLQPRIILYRDVMYDSEIDLIKKMAQPRLRRATVQNYKTGELEIANYRI 137
L P+K EE+A+L LY+ +M S +D + ++A + RA N T L A + I
Sbjct: 175 LFPMKYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAP--IFRAEEHN-TTRHLNEA-WSI 230
Query: 138 SKSAWLREPEHPVIERISRRVEHMTG-LTTSTAEELQVVNYGIGGHYEPHYDFARPGEAN 196
E E V+ + R V H + A+EL ++N+ + EP F R
Sbjct: 231 DSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELE---EPKLPFPRVSYDK 287
Query: 197 AFKSLG 202
A + LG
Sbjct: 288 ALEILG 293
>pdb|2E9F|A Chain A, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|C Chain C, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|D Chain D, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|B Chain B, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
Length = 462
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 111 KMAQPRLRRATVQNYKTGELEIANYRISKSAWLREPEHPVIERISRRVEHMTGLTTSTAE 170
K + R+ RA Y T E+A+Y K RE H V + R VE L T E
Sbjct: 353 KWRRERMWRAAEGGY-TLATELADYLAEKGLPFREAHHVVGRLVRRLVEEGRALKDLTLE 411
Query: 171 ELQV 174
ELQ
Sbjct: 412 ELQA 415
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,773,618
Number of Sequences: 62578
Number of extensions: 407432
Number of successful extensions: 860
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 848
Number of HSP's gapped (non-prelim): 10
length of query: 312
length of database: 14,973,337
effective HSP length: 99
effective length of query: 213
effective length of database: 8,778,115
effective search space: 1869738495
effective search space used: 1869738495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)