Query psy8177
Match_columns 312
No_of_seqs 236 out of 1303
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 20:33:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8177.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8177hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1591|consensus 100.0 2.5E-59 5.3E-64 435.6 14.5 227 43-271 49-279 (289)
2 PLN00052 prolyl 4-hydroxylase; 100.0 2.4E-53 5.3E-58 399.9 18.7 189 79-271 41-247 (310)
3 smart00702 P4Hc Prolyl 4-hydro 100.0 8.7E-35 1.9E-39 253.8 17.0 165 92-270 1-173 (178)
4 PRK05467 Fe(II)-dependent oxyg 99.9 5.8E-23 1.3E-27 185.8 13.9 156 94-269 2-171 (226)
5 PHA02813 hypothetical protein; 99.6 1.8E-15 3.9E-20 142.8 11.6 133 115-271 34-177 (354)
6 PHA02869 C4L/C10L-like gene fa 99.6 1.3E-15 2.8E-20 145.5 10.3 132 117-270 45-185 (418)
7 PF13640 2OG-FeII_Oxy_3: 2OG-F 99.4 5.3E-13 1.2E-17 105.4 5.4 79 172-269 1-94 (100)
8 COG3128 PiuC Uncharacterized i 99.2 5.1E-11 1.1E-15 103.5 9.4 155 93-268 3-173 (229)
9 PF13661 2OG-FeII_Oxy_4: 2OG-F 98.2 1.7E-06 3.6E-11 64.4 4.5 52 169-228 10-65 (70)
10 PF03336 Pox_C4_C10: Poxvirus 98.1 2E-05 4.4E-10 74.9 10.0 119 133-270 38-163 (339)
11 TIGR02408 ectoine_ThpD ectoine 97.9 0.00015 3.2E-09 67.9 11.7 165 85-266 22-238 (277)
12 KOG3710|consensus 97.9 0.00011 2.4E-09 66.3 9.9 150 93-268 54-231 (280)
13 PHA02866 Hypothetical protein; 97.8 9.4E-05 2E-09 69.0 8.6 130 117-271 32-164 (333)
14 PF03171 2OG-FeII_Oxy: 2OG-Fe( 97.7 2.6E-05 5.7E-10 61.0 2.6 82 170-269 2-91 (98)
15 PF05721 PhyH: Phytanoyl-CoA d 97.6 0.00031 6.8E-09 60.8 8.0 149 94-265 6-206 (211)
16 COG3751 EGL-9 Predicted prolin 97.4 0.0012 2.5E-08 61.0 9.9 148 99-263 55-226 (252)
17 PF09859 Oxygenase-NA: Oxygena 96.9 0.0024 5.2E-08 55.0 6.5 88 170-268 62-164 (173)
18 TIGR01762 chlorin-enz chlorina 96.8 0.01 2.2E-07 56.1 10.2 166 85-267 8-237 (288)
19 PF13759 2OG-FeII_Oxy_5: Putat 95.8 0.014 2.9E-07 46.2 4.3 67 175-265 5-92 (101)
20 PF13532 2OG-FeII_Oxy_2: 2OG-F 95.7 0.058 1.3E-06 47.1 8.3 147 94-265 2-177 (194)
21 KOG3844|consensus 95.4 0.11 2.4E-06 50.7 9.6 159 83-271 26-217 (476)
22 PF12851 Tet_JBP: Oxygenase do 94.7 0.088 1.9E-06 46.0 6.2 53 208-268 100-163 (171)
23 TIGR02466 conserved hypothetic 94.6 0.087 1.9E-06 47.3 6.1 71 170-264 96-187 (201)
24 PRK15401 alpha-ketoglutarate-d 91.3 3.5 7.6E-05 37.3 11.5 95 149-265 95-196 (213)
25 PHA02923 hypothetical protein; 90.5 0.62 1.3E-05 44.0 5.9 97 148-271 43-141 (315)
26 KOG3200|consensus 82.7 3.3 7.2E-05 36.4 5.7 94 88-190 8-108 (224)
27 KOG3959|consensus 82.6 1.6 3.6E-05 40.0 3.9 95 91-191 71-175 (306)
28 COG3826 Uncharacterized protei 78.0 5.6 0.00012 35.3 5.5 88 170-268 124-226 (236)
29 COG3145 AlkB Alkylated DNA rep 73.9 45 0.00098 29.8 10.4 85 149-243 85-170 (194)
30 PLN03001 oxidoreductase, 2OG-F 66.6 24 0.00051 32.8 7.3 98 150-268 88-205 (262)
31 COG4340 Uncharacterized protei 58.5 8.3 0.00018 34.3 2.5 39 219-264 159-201 (226)
32 TIGR00568 alkb DNA alkylation 56.8 38 0.00082 29.5 6.4 80 149-243 74-159 (169)
33 KOG0176|consensus 54.4 9.5 0.00021 34.2 2.2 30 283-312 129-161 (241)
34 PLN02984 oxidoreductase, 2OG-F 54.2 80 0.0017 30.5 8.8 40 75-114 39-82 (341)
35 PF06822 DUF1235: Protein of u 51.9 77 0.0017 29.7 7.8 97 148-271 32-132 (266)
36 PLN02485 oxidoreductase 51.3 48 0.001 31.7 6.8 58 207-268 215-279 (329)
37 PLN00417 oxidoreductase, 2OG-F 49.3 86 0.0019 30.3 8.2 58 207-268 230-293 (348)
38 PLN02365 2-oxoglutarate-depend 48.6 78 0.0017 29.9 7.7 99 150-268 124-241 (300)
39 PLN02904 oxidoreductase 46.9 1E+02 0.0022 30.0 8.3 56 207-268 235-297 (357)
40 PRK09965 3-phenylpropionate di 46.6 37 0.00081 26.6 4.4 48 209-265 4-52 (106)
41 PLN02216 protein SRG1 46.3 88 0.0019 30.4 7.8 58 207-268 237-300 (357)
42 COG5285 Protein involved in bi 46.3 40 0.00087 32.1 5.1 67 183-266 133-220 (299)
43 PLN02299 1-aminocyclopropane-1 44.5 65 0.0014 30.8 6.5 77 171-268 159-248 (321)
44 PLN02515 naringenin,2-oxogluta 42.3 1.1E+02 0.0024 29.8 7.7 57 207-268 222-286 (358)
45 PF10014 2OG-Fe_Oxy_2: 2OG-Fe 41.6 28 0.0006 30.9 3.2 52 204-264 123-179 (195)
46 PLN02276 gibberellin 20-oxidas 40.6 1.5E+02 0.0033 28.7 8.5 58 207-268 233-295 (361)
47 PLN02997 flavonol synthase 39.6 1.2E+02 0.0026 29.0 7.5 57 207-268 210-272 (325)
48 cd03528 Rieske_RO_ferredoxin R 39.0 93 0.002 23.6 5.5 46 211-265 4-51 (98)
49 COG3491 PcbC Isopenicillin N s 37.6 1.1E+02 0.0024 29.5 6.6 82 168-268 172-264 (322)
50 PHA02577 2 DNA end protector p 35.1 11 0.00024 32.9 -0.4 82 151-246 21-102 (181)
51 PLN02254 gibberellin 3-beta-di 34.7 1.7E+02 0.0038 28.4 7.8 48 207-260 237-292 (358)
52 PLN02758 oxidoreductase, 2OG-F 34.0 2.7E+02 0.0058 27.0 9.0 57 207-268 238-302 (361)
53 PLN02750 oxidoreductase, 2OG-F 33.6 2E+02 0.0044 27.6 8.1 57 207-268 220-284 (345)
54 PLN02912 oxidoreductase, 2OG-F 32.5 2.3E+02 0.0049 27.4 8.2 57 207-268 224-286 (348)
55 KOG0143|consensus 30.5 1.8E+02 0.0039 27.8 7.1 56 208-268 204-267 (322)
56 PTZ00273 oxidase reductase; Pr 29.7 1.6E+02 0.0034 27.9 6.6 57 207-268 205-267 (320)
57 COG3870 Uncharacterized protei 29.4 21 0.00046 28.5 0.4 15 211-225 85-99 (109)
58 PLN02639 oxidoreductase, 2OG-F 28.6 2.4E+02 0.0053 27.0 7.7 58 207-268 217-280 (337)
59 PLN02393 leucoanthocyanidin di 28.1 2.2E+02 0.0047 27.7 7.2 58 207-268 240-303 (362)
60 PLN02156 gibberellin 2-beta-di 27.9 3.4E+02 0.0074 26.1 8.5 58 207-268 207-270 (335)
61 PLN02403 aminocyclopropanecarb 27.5 1.9E+02 0.0041 27.4 6.6 77 172-268 155-244 (303)
62 cd03530 Rieske_NirD_small_Baci 27.1 1.3E+02 0.0028 22.9 4.5 45 213-266 6-53 (98)
63 PRK09553 tauD taurine dioxygen 27.1 39 0.00084 31.4 1.8 34 184-227 95-128 (277)
64 PF02668 TauD: Taurine catabol 26.5 62 0.0013 28.8 3.0 33 229-269 220-254 (258)
65 cd00250 CAS_like Clavaminic ac 26.1 63 0.0014 29.4 3.0 34 228-269 218-254 (262)
66 PLN02704 flavonol synthase 25.2 2.5E+02 0.0053 26.9 7.0 57 207-268 226-288 (335)
67 COG0638 PRE1 20S proteasome, a 24.1 69 0.0015 29.2 2.8 12 301-312 140-151 (236)
68 KOG0183|consensus 23.9 59 0.0013 29.6 2.2 26 284-312 128-153 (249)
69 TIGR03691 20S_bact_alpha prote 23.8 72 0.0016 28.9 2.9 11 302-312 134-144 (228)
70 cd03474 Rieske_T4moC Toluene-4 23.2 1.8E+02 0.0039 22.5 4.8 45 213-266 6-53 (108)
71 PLN02947 oxidoreductase 23.1 3.2E+02 0.0069 26.7 7.4 56 207-268 252-314 (374)
72 PHA02985 hypothetical protein; 22.6 4.6E+02 0.0099 24.7 7.8 94 148-270 39-136 (271)
73 PF06153 DUF970: Protein of un 22.4 21 0.00046 28.9 -0.8 12 214-225 88-99 (109)
74 PLN03178 leucoanthocyanidin di 22.0 3.5E+02 0.0077 26.1 7.5 57 207-268 238-300 (360)
75 cd03765 proteasome_beta_bacter 21.9 85 0.0018 28.8 2.9 26 285-312 109-134 (236)
76 KOG4459|consensus 21.6 28 0.00061 35.0 -0.3 56 204-266 364-424 (471)
77 KOG4176|consensus 21.5 4.1E+02 0.0088 25.7 7.6 157 81-261 116-291 (323)
78 PF14033 DUF4246: Protein of u 21.4 1.8E+02 0.0039 29.8 5.5 42 75-116 191-241 (501)
No 1
>KOG1591|consensus
Probab=100.00 E-value=2.5e-59 Score=435.64 Aligned_cols=227 Identities=45% Similarity=0.817 Sum_probs=202.1
Q ss_pred hHHHHHHhcccCCCCC-CCCCCCCceEEeecCCCCccccCCceeeehccCCcEEEEcCCCCHHHHHHHHHHhcCcCccce
Q psy8177 43 TEREKYEMLCRGDLTV-PPAIVAQLKCRYVHRNVPYLRLMPLKEEEAYLQPRIILYRDVMYDSEIDLIKKMAQPRLRRAT 121 (312)
Q Consensus 43 ~~~~~~~~lCrg~~~~-~~~~~~~L~C~y~~~~~p~l~laPlk~E~ls~~P~I~v~~d~Ls~~Ec~~Li~la~~~l~~s~ 121 (312)
++...|+..|||+... ++.....+.|++... ||+++||+|+|++|++|+|++||||||++||++|+.+|++++++++
T Consensus 49 ~~~~~~~~~c~g~~~~~~~~~~~~~~~~~~~~--~~~~~ap~k~E~lsw~P~~~~yhd~ls~~e~d~l~~lak~~l~~st 126 (289)
T KOG1591|consen 49 QEFTVYEQGCRGELPPLTKLTLRRLSCRNRAG--PFLRLAPVKLEELSWDPRVVLYHDFLSDEECDHLISLAKPKLERST 126 (289)
T ss_pred ccccchhhhccCccCccchhHhhhhhcccccC--cceeecchhhhhcccCCceEeehhcCCHHHHHHHHHhhhhhhhcee
Confidence 4567799999999653 333456677877644 9999999999999999999999999999999999999999999999
Q ss_pred ee-eCCCCceeeeeeeeecccccCCCCcHHHHHHHHHHHHhcCCCccccccccccccCCCCcccccccCCCCCCcccccc
Q psy8177 122 VQ-NYKTGELEIANYRISKSAWLREPEHPVIERISRRVEHMTGLTTSTAEELQVVNYGIGGHYEPHYDFARPGEANAFKS 200 (312)
Q Consensus 122 v~-~~~~g~~~~~~~R~s~~awl~~~~~~~~~~i~~RI~~~tGl~~~~~E~lqv~rY~~Gg~y~~H~D~~~~~~~~~~~~ 200 (312)
|. +..+|....+.+|+|+++|+..+.++++++|++||+++||++++.+|.|||+||++||||.||+|++.......+..
T Consensus 127 v~~~~~~~~~~~~~~R~S~~t~l~~~~~~~~~~i~~ri~~~T~l~~e~~E~lqVlnYg~Gg~Y~~H~D~~~~~~~~~~~~ 206 (289)
T KOG1591|consen 127 VVADKGTGHSTTSAVRTSSGTFLPDGASPVVSRIEQRIADLTGLPVENGESLQVLNYGLGGHYEPHYDYFLPEEDETFNG 206 (289)
T ss_pred eeccCCcccccceeeEecceeEecCCCCHHHHHHHHHHHhccCCCcccCccceEEEecCCccccccccccccccchhhhh
Confidence 95 55567766777899999999987899999999999999999999999999999999999999999996522222344
Q ss_pred CCCCCeEEEEEEeccCCCCCceeeecCCCe--EEeccCccEEEEccCCCCCCCCCCCcccccccccceeEEee
Q psy8177 201 LGTGNRVATVLFYMSDVAQGGATVFTSLNL--SLWPEKGTAAFWHNLHSSGDGDYYTRHAACPVLTGSNSLHS 271 (312)
Q Consensus 201 ~~~g~R~aT~L~YLnDv~~GG~TvFp~~~~--~V~P~kGsal~f~n~~~~g~~d~~tlH~gcPV~~G~KwI~~ 271 (312)
.+.|+|++|+|+||+||++||+|+||.++. +|+|+||+|+||+|+++||.+|++|+|+||||+.|+||+++
T Consensus 207 ~~~g~RiaT~l~yls~v~~GG~TvFP~~~~~~~V~PkkGdal~wfnl~~~~~~d~~S~H~~CPv~~G~kw~~~ 279 (289)
T KOG1591|consen 207 LNGGNRIATVLMYLSDVEQGGETVFPNLGMKPAVKPKKGDALFWFNLHPDGEGDPRSLHGGCPVLVGSKWIAT 279 (289)
T ss_pred cccCCcceeEEEEecccCCCCcccCCCCCCcccccCCCCCeeEEEEccCCCCCCccccccCCCeeeccceeee
Confidence 457999999999999999999999999999 99999999999999999999999999999999999999544
No 2
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=100.00 E-value=2.4e-53 Score=399.85 Aligned_cols=189 Identities=33% Similarity=0.576 Sum_probs=174.3
Q ss_pred ccCCceeeehccCCcEEEEcCCCCHHHHHHHHHHhcCcCccceeeeCCCCceeeeeeeeecccccCCCCcHHHHHHHHHH
Q psy8177 79 RLMPLKEEEAYLQPRIILYRDVMYDSEIDLIKKMAQPRLRRATVQNYKTGELEIANYRISKSAWLREPEHPVIERISRRV 158 (312)
Q Consensus 79 ~laPlk~E~ls~~P~I~v~~d~Ls~~Ec~~Li~la~~~l~~s~v~~~~~g~~~~~~~R~s~~awl~~~~~~~~~~i~~RI 158 (312)
.+.|.|+|+||++|+|++||||||++||++||++++++++++++.+..+|+...+++|+|.++|+...+++++++|++||
T Consensus 41 ~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~~s~~RTS~~~~l~~~~dpvv~~I~~Ri 120 (310)
T PLN00052 41 PFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLDKRQDPVVSRIEERI 120 (310)
T ss_pred CcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCccccCCCEEecceeecCCCCHHHHHHHHHH
Confidence 35899999999999999999999999999999999999999999887677767788999999999987899999999999
Q ss_pred HHhcCCCccccccccccccCCCCcccccccCCCCCCccccccCCCCCeEEEEEEeccCCCCCceeeecCC----------
Q psy8177 159 EHMTGLTTSTAEELQVVNYGIGGHYEPHYDFARPGEANAFKSLGTGNRVATVLFYMSDVAQGGATVFTSL---------- 228 (312)
Q Consensus 159 ~~~tGl~~~~~E~lqv~rY~~Gg~y~~H~D~~~~~~~~~~~~~~~g~R~aT~L~YLnDv~~GG~TvFp~~---------- 228 (312)
+++++++....|.|||+||++||+|.+|+|++...... ...++|++|+|+|||||++||+|+||.+
T Consensus 121 a~~t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~----~~gg~R~aTvL~YLndv~~GGeT~FP~~~~~~~~~~~~ 196 (310)
T PLN00052 121 AAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQ----ALGGHRYATVLMYLSTVDKGGETVFPNAEGWENQPKDD 196 (310)
T ss_pred HHHhCCCcccCcceEEEecCCCCCCCCCCCcccccccc----ccCCceeEEEEEEeccCCCCCceecCCccccccccccc
Confidence 99999999999999999999999999999998643211 1258999999999999999999999997
Q ss_pred --------CeEEeccCccEEEEccCCCCCCCCCCCcccccccccceeEEee
Q psy8177 229 --------NLSLWPEKGTAAFWHNLHSSGDGDYYTRHAACPVLTGSNSLHS 271 (312)
Q Consensus 229 --------~~~V~P~kGsal~f~n~~~~g~~d~~tlH~gcPV~~G~KwI~~ 271 (312)
+++|+|+||+||||+|++++|.+|++++|+||||+.|+||+.+
T Consensus 197 ~~s~c~~~gl~VkPkkG~ALlF~nl~~dG~~D~~SlHagcPVi~G~Kw~at 247 (310)
T PLN00052 197 TFSECAHKGLAVKPVKGDAVLFFSLHIDGVPDPLSLHGSCPVIEGEKWSAP 247 (310)
T ss_pred chhhhhcCCeEeccCcceEEEEeccCCCCCCCcccccCCCeeecCeEEEEE
Confidence 7999999999999999999999999999999999999999554
No 3
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=100.00 E-value=8.7e-35 Score=253.82 Aligned_cols=165 Identities=36% Similarity=0.592 Sum_probs=146.0
Q ss_pred CcEEEEcCCCCHHHHHHHHHHhcCcCccceeeeCCCCceeeeeeeeecccccCCCC-cHHHHHHHHHHHHhcCCC---cc
Q psy8177 92 PRIILYRDVMYDSEIDLIKKMAQPRLRRATVQNYKTGELEIANYRISKSAWLREPE-HPVIERISRRVEHMTGLT---TS 167 (312)
Q Consensus 92 P~I~v~~d~Ls~~Ec~~Li~la~~~l~~s~v~~~~~g~~~~~~~R~s~~awl~~~~-~~~~~~i~~RI~~~tGl~---~~ 167 (312)
|.|+++|||||++||+.|++++++.+.++.+..+..+....+++|+|+.+|+...+ ++++++|.+||.++++++ ..
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~~~~~~l~~~i~~~~~~~~~~~~ 80 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLGWRGEVTRGDTNPNHDSKYRQSNGTWLELLKGDLVIERIRQRLADFLGLLRGLPL 80 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhcccceeecCCCCccccCCCEeecceecCCCCCCHHHHHHHHHHHHHHCCCchhhc
Confidence 78999999999999999999999887788887654433245789999999998764 789999999999999998 68
Q ss_pred ccccccccccCCCCcccccccCCCCCCccccccCCCCCeEEEEEEeccCCCCCceeeecCCCe----EEeccCccEEEEc
Q psy8177 168 TAEELQVVNYGIGGHYEPHYDFARPGEANAFKSLGTGNRVATVLFYMSDVAQGGATVFTSLNL----SLWPEKGTAAFWH 243 (312)
Q Consensus 168 ~~E~lqv~rY~~Gg~y~~H~D~~~~~~~~~~~~~~~g~R~aT~L~YLnDv~~GG~TvFp~~~~----~V~P~kGsal~f~ 243 (312)
..|.+|+++|++|++|.+|+|...... .++|.+|+++||||++.||+|+||..+. .|+|++|++|+|+
T Consensus 81 ~~~~~~~~~Y~~g~~~~~H~D~~~~~~--------~~~r~~T~~~yLn~~~~GG~~~f~~~~~~~~~~v~P~~G~~v~f~ 152 (178)
T smart00702 81 SAEDAQVARYGPGGHYGPHVDNFEDDE--------NGDRIATFLLYLNDVEEGGELVFPGLGLMVCATVKPKKGDLLFFP 152 (178)
T ss_pred cCcceEEEEECCCCcccCcCCCCCCCC--------CCCeEEEEEEEeccCCcCceEEecCCCCccceEEeCCCCcEEEEe
Confidence 899999999999999999999986431 2689999999999999999999999887 9999999999999
Q ss_pred cCCCCCCCCCCCcccccccccceeEEe
Q psy8177 244 NLHSSGDGDYYTRHAACPVLTGSNSLH 270 (312)
Q Consensus 244 n~~~~g~~d~~tlH~gcPV~~G~KwI~ 270 (312)
|.+ ++++|++|||+.|.||+.
T Consensus 153 ~~~------~~~~H~v~pv~~G~r~~~ 173 (178)
T smart00702 153 SGR------GRSLHGVCPVTRGSRWAI 173 (178)
T ss_pred CCC------CCccccCCcceeCCEEEE
Confidence 843 389999999999999954
No 4
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=99.89 E-value=5.8e-23 Score=185.84 Aligned_cols=156 Identities=17% Similarity=0.219 Sum_probs=117.7
Q ss_pred EEEEcCCCCHHHHHHHHHHhcC-cCccceeeeCCCCceeeeeeeeecccccCCCCcHHHHHHHHHHHHhcC---------
Q psy8177 94 IILYRDVMYDSEIDLIKKMAQP-RLRRATVQNYKTGELEIANYRISKSAWLREPEHPVIERISRRVEHMTG--------- 163 (312)
Q Consensus 94 I~v~~d~Ls~~Ec~~Li~la~~-~l~~s~v~~~~~g~~~~~~~R~s~~awl~~~~~~~~~~i~~RI~~~tG--------- 163 (312)
|++++||||++||+++++..+. .+..+.+.. |. ..+.+|++...- .++++.+.|.++|...+.
T Consensus 2 i~~I~~vLs~eec~~~~~~le~~~~~dg~~ta---G~-~~~~vKnN~ql~---~d~~~a~~l~~~i~~~L~~~~l~~sa~ 74 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELLDAAEWVDGRVTA---GA-QAAQVKNNQQLP---EDSPLARELGNLILDALTRNPLFFSAA 74 (226)
T ss_pred eeeecccCCHHHHHHHHHHHHhcCCccCCcCc---Cc-cchhcccccccC---CCCHHHHHHHHHHHHHHhcCchhhhhc
Confidence 6789999999999999999864 465444322 21 245677766543 346688888888876543
Q ss_pred CCccccccccccccCCCCcccccccCCCCCCccccccCCCCCeEEEEEEeccCCC--CCceeeecCC--CeEEeccCccE
Q psy8177 164 LTTSTAEELQVVNYGIGGHYEPHYDFARPGEANAFKSLGTGNRVATVLFYMSDVA--QGGATVFTSL--NLSLWPEKGTA 239 (312)
Q Consensus 164 l~~~~~E~lqv~rY~~Gg~y~~H~D~~~~~~~~~~~~~~~g~R~aT~L~YLnDv~--~GG~TvFp~~--~~~V~P~kGsa 239 (312)
++ ....+++|.+|..|++|.+|.|.+...... ......|.+|+++||||++ +||+|+|+.. ...|+|++|++
T Consensus 75 lp-~~i~~~~f~rY~~G~~y~~H~D~~~~~~~~---~~~~~rs~lS~~lyLnd~~~yeGGEl~~~~~~g~~~Vkp~aG~~ 150 (226)
T PRK05467 75 LP-RKIHPPLFNRYEGGMSYGFHVDNAVRSLPG---TGGRVRTDLSATLFLSDPDDYDGGELVIEDTYGEHRVKLPAGDL 150 (226)
T ss_pred cc-cccccceEEEECCCCccCccccCCcccCCC---CCcceeEEEEEEEEeCCCCCCcCCceEEecCCCcEEEecCCCeE
Confidence 22 233578999999999999999997653211 0011356899999999875 8999999753 58999999999
Q ss_pred EEEccCCCCCCCCCCCcccccccccceeEE
Q psy8177 240 AFWHNLHSSGDGDYYTRHAACPVLTGSNSL 269 (312)
Q Consensus 240 l~f~n~~~~g~~d~~tlH~gcPV~~G~KwI 269 (312)
|+|++ .++|+++||++|.||+
T Consensus 151 vlfps---------~~lH~v~pVt~G~R~~ 171 (226)
T PRK05467 151 VLYPS---------TSLHRVTPVTRGVRVA 171 (226)
T ss_pred EEECC---------CCceeeeeccCccEEE
Confidence 99997 6899999999999983
No 5
>PHA02813 hypothetical protein; Provisional
Probab=99.63 E-value=1.8e-15 Score=142.78 Aligned_cols=133 Identities=15% Similarity=0.226 Sum_probs=103.7
Q ss_pred CcCccceeeeCCCC-ceeeeeeeeecccccCCCCcHHHHHHHHHHHH-----hcCCC----ccccccccccccCCCCccc
Q psy8177 115 PRLRRATVQNYKTG-ELEIANYRISKSAWLREPEHPVIERISRRVEH-----MTGLT----TSTAEELQVVNYGIGGHYE 184 (312)
Q Consensus 115 ~~l~~s~v~~~~~g-~~~~~~~R~s~~awl~~~~~~~~~~i~~RI~~-----~tGl~----~~~~E~lqv~rY~~Gg~y~ 184 (312)
-.+..|.+.+..+| +....+.|+++.+.+++. +.|++||+. +.|.+ ....|.+++.+|.+|++|.
T Consensus 34 ~~~~~s~i~~~~~~ge~l~~~iRnNkrviid~~-----~~L~erIr~~Lp~~l~~~~lv~~V~vnerirfyrY~kGq~F~ 108 (354)
T PHA02813 34 IIWEESKVFDHEKGGEVINTNERQCKQYIIRGL-----DDIFKVIRKKLLLSFEFPQKISDIILDNTITLIKYEKGDFFN 108 (354)
T ss_pred cCccccceeccccCceEEccccccceEEEEcCH-----HHHHHHHHHhhHHHhcCCccceeEEEcceEEEEEECCCcccC
Confidence 35788888885554 566788999999988743 555555553 33433 3567999999999999999
Q ss_pred ccccCCCCCCccccccCCCCCeEEEEEEeccCCCCCceeeecCC-CeEEeccCccEEEEccCCCCCCCCCCCcccccccc
Q psy8177 185 PHYDFARPGEANAFKSLGTGNRVATVLFYMSDVAQGGATVFTSL-NLSLWPEKGTAAFWHNLHSSGDGDYYTRHAACPVL 263 (312)
Q Consensus 185 ~H~D~~~~~~~~~~~~~~~g~R~aT~L~YLnDv~~GG~TvFp~~-~~~V~P~kGsal~f~n~~~~g~~d~~tlH~gcPV~ 263 (312)
+|.|+...... .....|+|+|||++++||+|.|... .-+|. .|++|+|.. ...|+|++|.
T Consensus 109 ~H~Dg~~~r~k--------~~s~~tLLLYLN~~~~GGeT~f~~~~~tsI~--~g~dlLFdh---------~l~Heg~~V~ 169 (354)
T PHA02813 109 NHRDFIHFKSK--------NCYCYHLVLYLNNTSKGGNTNIHIKDNTIFS--TKNDVLFDK---------TLNHSSDIIT 169 (354)
T ss_pred cccCCceeecC--------CceEEEEEEEEeccCCCCceEEEcCCCceEe--ecceEEEec---------ccccCCcEec
Confidence 99998653311 2389999999999999999999865 23455 999999985 7899999999
Q ss_pred cceeEEee
Q psy8177 264 TGSNSLHS 271 (312)
Q Consensus 264 ~G~KwI~~ 271 (312)
+|.|||.-
T Consensus 170 sG~KyVa~ 177 (354)
T PHA02813 170 DGEKNIAL 177 (354)
T ss_pred cCeEEEEE
Confidence 99999553
No 6
>PHA02869 C4L/C10L-like gene family protein; Provisional
Probab=99.63 E-value=1.3e-15 Score=145.52 Aligned_cols=132 Identities=16% Similarity=0.249 Sum_probs=106.6
Q ss_pred CccceeeeCCCC-ceeeeeeeeecccccCCCCcHHHHHHHHHHHHh-----cCC--CccccccccccccCCCCccccccc
Q psy8177 117 LRRATVQNYKTG-ELEIANYRISKSAWLREPEHPVIERISRRVEHM-----TGL--TTSTAEELQVVNYGIGGHYEPHYD 188 (312)
Q Consensus 117 l~~s~v~~~~~g-~~~~~~~R~s~~awl~~~~~~~~~~i~~RI~~~-----tGl--~~~~~E~lqv~rY~~Gg~y~~H~D 188 (312)
+..|.+.+..+| +......|.|++.-+. ..+.+.|++||+.+ -|+ ....+|.+++.+|.+|++|.+|.|
T Consensus 45 ~~~s~i~~~~~g~e~~~~~~~ksKqii~e---~~La~~L~erlr~lLp~~lk~~v~~V~lnerirfyrY~kGq~F~~H~D 121 (418)
T PHA02869 45 CEDSKIFFPEKRTELLSIKDRKSKQIVFE---NSLNDDLLKKLHALIYDELSTVVDSVTVENTVTLIMYEKGDYFARHRD 121 (418)
T ss_pred cccceeeccccCceeEeeccccceeEEec---hHHHHHHHHHHHHhhhHHhhCccceEEEcceEEEEEECCCCccccccc
Confidence 678888887777 5566778999998875 45677777777654 343 345679999999999999999999
Q ss_pred CCCCCCccccccCCCCCeEEEEEEeccCCCCCceeeecC-CCeEEeccCccEEEEccCCCCCCCCCCCccccccccccee
Q psy8177 189 FARPGEANAFKSLGTGNRVATVLFYMSDVAQGGATVFTS-LNLSLWPEKGTAAFWHNLHSSGDGDYYTRHAACPVLTGSN 267 (312)
Q Consensus 189 ~~~~~~~~~~~~~~~g~R~aT~L~YLnDv~~GG~TvFp~-~~~~V~P~kGsal~f~n~~~~g~~d~~tlH~gcPV~~G~K 267 (312)
+..... ......|+|+|||++++||+|.|.. ...+|.|++| |+|.. ...|+|++|.+|.|
T Consensus 122 g~~~rs--------~e~s~~tLLLYLNd~~~GGET~f~~~~~~sI~pksg--LLFdh---------~l~Heg~~V~sG~K 182 (418)
T PHA02869 122 FSTVFS--------KNIICVHLLLYLEQPETGGETVIYIDNNTSVKLKTD--HLFDK---------TIEHESITVESGRK 182 (418)
T ss_pred CceecC--------CCEEEEEEEEEEeccCCCCceEEEeCCCceEecCCC--eEecc---------ccccCCcEeecCeE
Confidence 865431 2456789999999999999999986 5688999999 77764 78899999999999
Q ss_pred EEe
Q psy8177 268 SLH 270 (312)
Q Consensus 268 wI~ 270 (312)
||.
T Consensus 183 yVa 185 (418)
T PHA02869 183 CVA 185 (418)
T ss_pred EEE
Confidence 954
No 7
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=99.38 E-value=5.3e-13 Score=105.36 Aligned_cols=79 Identities=27% Similarity=0.467 Sum_probs=63.1
Q ss_pred ccccccCCCCcccccccCCCCCCccccccCCCCCeEEEEEEeccCCC---CCceeeecC------CCeEEe-----ccCc
Q psy8177 172 LQVVNYGIGGHYEPHYDFARPGEANAFKSLGTGNRVATVLFYMSDVA---QGGATVFTS------LNLSLW-----PEKG 237 (312)
Q Consensus 172 lqv~rY~~Gg~y~~H~D~~~~~~~~~~~~~~~g~R~aT~L~YLnDv~---~GG~TvFp~------~~~~V~-----P~kG 237 (312)
+|+.+|..|++|.||.|... ...+.+|+|+|||+++ .||+|+|.. ....+. |+.|
T Consensus 1 ~~~~~y~~G~~~~~H~D~~~-----------~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g 69 (100)
T PF13640_consen 1 MQLNRYPPGGFFGPHTDNSY-----------DPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPG 69 (100)
T ss_dssp -EEEEEETTEEEEEEESSSC-----------CCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTT
T ss_pred CEEEEECcCCEEeeeECCCC-----------CCcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCC
Confidence 47899999999999999864 1678999999999887 999999974 234555 9999
Q ss_pred cEEEEccCCCCCCCCCCCccccccc-ccceeEE
Q psy8177 238 TAAFWHNLHSSGDGDYYTRHAACPV-LTGSNSL 269 (312)
Q Consensus 238 sal~f~n~~~~g~~d~~tlH~gcPV-~~G~KwI 269 (312)
++|+|.+ ..++|++.|| ..|.|++
T Consensus 70 ~~v~F~~--------~~~~H~v~~v~~~~~R~~ 94 (100)
T PF13640_consen 70 RLVIFPS--------DNSLHGVTPVGEGGRRYS 94 (100)
T ss_dssp EEEEEES--------CTCEEEEEEE-EESEEEE
T ss_pred EEEEEeC--------CCCeecCcccCCCCCEEE
Confidence 9999996 3799999999 8888873
No 8
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=99.22 E-value=5.1e-11 Score=103.46 Aligned_cols=155 Identities=15% Similarity=0.203 Sum_probs=104.0
Q ss_pred cEEEEcCCCCHHHHHHHHHHhcC-cCccceeeeCCCCceeeeeeeeecccccCCCCcHHHHHHHHHHHH-------hcCC
Q psy8177 93 RIILYRDVMYDSEIDLIKKMAQP-RLRRATVQNYKTGELEIANYRISKSAWLREPEHPVIERISRRVEH-------MTGL 164 (312)
Q Consensus 93 ~I~v~~d~Ls~~Ec~~Li~la~~-~l~~s~v~~~~~g~~~~~~~R~s~~awl~~~~~~~~~~i~~RI~~-------~tGl 164 (312)
.+.-+..+||+++|..+.+.... .+....+.. +..-...|....+ + .++++.+.+..-|.+ +.+.
T Consensus 3 m~lhIp~VLs~a~va~iRa~l~~A~w~dGrat~----g~q~a~vk~n~ql--p-~~s~l~~~vg~~il~al~~~plff~a 75 (229)
T COG3128 3 MMLHIPEVLSEAQVARIRAALEQAEWVDGRATQ----GPQGAQVKNNLQL--P-QDSALARELGNEILQALTAHPLFFAA 75 (229)
T ss_pred eEEechhhCCHHHHHHHHHHHhhcccccccccc----CcchhhhhccccC--C-cccHHHHHHHHHHHHHHHhchhHHHh
Confidence 34567899999999999988653 232222111 1112333433332 2 234555555554432 2222
Q ss_pred Cc-cccccccccccCCCCcccccccCCCCCCccccccCCCCCeEE---EEEEeccCCC--CCceeee--cCCCeEEeccC
Q psy8177 165 TT-STAEELQVVNYGIGGHYEPHYDFARPGEANAFKSLGTGNRVA---TVLFYMSDVA--QGGATVF--TSLNLSLWPEK 236 (312)
Q Consensus 165 ~~-~~~E~lqv~rY~~Gg~y~~H~D~~~~~~~~~~~~~~~g~R~a---T~L~YLnDv~--~GG~TvF--p~~~~~V~P~k 236 (312)
.+ ...++.++.+|+.|++|.+|.|+......+ +.+.|+- ++-++|+|++ .||+.|. ++.+..|+=..
T Consensus 76 ALp~t~~~P~Fn~Y~eg~~f~fHvDgavr~~hp-----~~~~~lrtdls~tlfl~DPedYdGGeLVv~dtYg~h~VklPA 150 (229)
T COG3128 76 ALPRTCLPPLFNRYQEGDFFGFHVDGAVRSIHP-----GSGFRLRTDLSCTLFLSDPEDYDGGELVVNDTYGNHRVKLPA 150 (229)
T ss_pred hcccccCCchhhhccCCCcccccccCcccccCC-----CCCceeEeeeeeeeecCCccccCCceEEEeccccceEEeccC
Confidence 22 256889999999999999999997654211 2344554 4567899987 6999998 44578898888
Q ss_pred ccEEEEccCCCCCCCCCCCcccccccccceeE
Q psy8177 237 GTAAFWHNLHSSGDGDYYTRHAACPVLTGSNS 268 (312)
Q Consensus 237 Gsal~f~n~~~~g~~d~~tlH~gcPV~~G~Kw 268 (312)
|++|+|++ .++|.+.||+.|.++
T Consensus 151 GdLVlypS---------tSlH~VtPVTRg~R~ 173 (229)
T COG3128 151 GDLVLYPS---------TSLHEVTPVTRGERF 173 (229)
T ss_pred CCEEEccc---------ccceeccccccCceE
Confidence 99999997 799999999999985
No 9
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily
Probab=98.22 E-value=1.7e-06 Score=64.45 Aligned_cols=52 Identities=21% Similarity=0.357 Sum_probs=42.7
Q ss_pred cccccccccCCCCcccccccCCCCCCccccccCCCCCeEEEEEEecc----CCCCCceeeecCC
Q psy8177 169 AEELQVVNYGIGGHYEPHYDFARPGEANAFKSLGTGNRVATVLFYMS----DVAQGGATVFTSL 228 (312)
Q Consensus 169 ~E~lqv~rY~~Gg~y~~H~D~~~~~~~~~~~~~~~g~R~aT~L~YLn----Dv~~GG~TvFp~~ 228 (312)
.+.++..+|..|++|.+|.|...... ...|.+|+||||| +...||++.|...
T Consensus 10 ~~~~~~~~~~~g~~~~~H~D~~~~~~--------~~~r~~t~llYLn~~w~~d~~Gg~~~f~~~ 65 (70)
T PF13661_consen 10 RPNFRFYRYRRGDFFGWHVDADPSSS--------GKRRFLTLLLYLNEDWDEDFGGGELFFDDD 65 (70)
T ss_pred CcceeEEEcCCCCEeeeeEcCCcccc--------ccceeEEEEEEecccccCccCCcEEEEeCC
Confidence 46788999999999999999976532 3789999999999 5567888888753
No 10
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae.
Probab=98.09 E-value=2e-05 Score=74.86 Aligned_cols=119 Identities=14% Similarity=0.272 Sum_probs=84.2
Q ss_pred eeeeeecccccCC-CCcHHHHHHHHHHHHh-cC-C-CccccccccccccCCCCcccccccCCCCCCccccccCCCCCeEE
Q psy8177 133 ANYRISKSAWLRE-PEHPVIERISRRVEHM-TG-L-TTSTAEELQVVNYGIGGHYEPHYDFARPGEANAFKSLGTGNRVA 208 (312)
Q Consensus 133 ~~~R~s~~awl~~-~~~~~~~~i~~RI~~~-tG-l-~~~~~E~lqv~rY~~Gg~y~~H~D~~~~~~~~~~~~~~~g~R~a 208 (312)
...|.|+..-+.. ..+.+.++|.+-|.+- .. + ...-.+.+.+.+|..|++|.-|.|...... ....-.
T Consensus 38 ~~~r~sk~iv~~~~~~~dI~~~ik~~l~~~lk~~v~~V~V~n~iTfikY~kGd~f~~~~d~~~~~~--------~n~~~y 109 (339)
T PF03336_consen 38 HEFRKSKQIVIEDSLNDDIFSKIKNLLYDELKNVVEDVIVDNTITFIKYEKGDFFDNHRDFIKRDS--------KNCLEY 109 (339)
T ss_pred ccccccceEEEeccchHHHHHHHHHHHHHHhhcceeEEEEcceEEEEEEccCcchhhhcccceecc--------CCceEE
Confidence 3378888866653 2345677776666532 22 1 234568899999999999999999443221 245779
Q ss_pred EEEEeccCCCCCceeeec---CCCeEEeccCccEEEEccCCCCCCCCCCCcccccccccceeEEe
Q psy8177 209 TVLFYMSDVAQGGATVFT---SLNLSLWPEKGTAAFWHNLHSSGDGDYYTRHAACPVLTGSNSLH 270 (312)
Q Consensus 209 T~L~YLnDv~~GG~TvFp---~~~~~V~P~kGsal~f~n~~~~g~~d~~tlH~gcPV~~G~KwI~ 270 (312)
++++||+.++.||+|.|. ..+-.|.+ ++-++|. ....|.+.+|.+|.|.|+
T Consensus 110 ~LvLyL~~~~~GGktkiyi~~~~~tvI~~--~~DvLFd---------Ksl~h~s~~V~~G~K~VA 163 (339)
T PF03336_consen 110 HLVLYLNNPENGGKTKIYIDPNDNTVIST--SEDVLFD---------KSLNHESIIVEEGRKIVA 163 (339)
T ss_pred EEEEEEeccCCCceEEEEECCCCceeeec--cccEEEe---------ccccccceEeccCeEEEE
Confidence 999999999999999975 23322433 5666665 367899999999999964
No 11
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=97.89 E-value=0.00015 Score=67.92 Aligned_cols=165 Identities=13% Similarity=0.151 Sum_probs=91.5
Q ss_pred eeehccCCcEEEEcCCCCHHHHHHHHHHhcCcCccceeeeCCCCc--eeeeeeeeecccccCCCCcHHHH------HHHH
Q psy8177 85 EEEAYLQPRIILYRDVMYDSEIDLIKKMAQPRLRRATVQNYKTGE--LEIANYRISKSAWLREPEHPVIE------RISR 156 (312)
Q Consensus 85 ~E~ls~~P~I~v~~d~Ls~~Ec~~Li~la~~~l~~s~v~~~~~g~--~~~~~~R~s~~awl~~~~~~~~~------~i~~ 156 (312)
++....+-|+ ++.+||+++||+.|++.....+....+.....+. ......|.-...| ..++.++ +|..
T Consensus 22 i~~f~~dGyv-vl~~vls~eev~~lr~~i~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~~l~~~p~l~~ 97 (277)
T TIGR02408 22 LQSYERDGFL-LLENLFSDDEVAALLAEVERMTRDPAIVRDEEAITEPGSNAVRSIFEVH---VLSPILARLVRDPRVAN 97 (277)
T ss_pred HHHHHHCCEE-ECcccCCHHHHHHHHHHHHHHHhcccccCCCcceecCCCCceEEEeccc---ccCHHHHHHHcChHHHH
Confidence 3455677775 7799999999999998876543221110000000 0001222211111 1233333 3445
Q ss_pred HHHHhcCCCccccccccccccCC-CCcccccccCCCCCCccccccCCCCCeEEEEEEeccCCCCC-ceeee-cCCC----
Q psy8177 157 RVEHMTGLTTSTAEELQVVNYGI-GGHYEPHYDFARPGEANAFKSLGTGNRVATVLFYMSDVAQG-GATVF-TSLN---- 229 (312)
Q Consensus 157 RI~~~tGl~~~~~E~lqv~rY~~-Gg~y~~H~D~~~~~~~~~~~~~~~g~R~aT~L~YLnDv~~G-G~TvF-p~~~---- 229 (312)
.+++++|-+....-..-+.+.+. |+.+.||.|...-...... ...+.+|+.++|.|+... |++.| |.-.
T Consensus 98 ~~~~LlG~~~~l~~~~l~~kp~~~g~~~~WHQD~~~w~~~~~~----p~~~~vt~wiaLdD~t~eNG~l~vIPGSH~~~~ 173 (277)
T TIGR02408 98 AARQILGSDVYVHQSRINMKPGFKGTGFYWHSDFETWHAEDGM----PSMRAVSCSIALTDNNETNGPLMLVPGSHRTFI 173 (277)
T ss_pred HHHHHcCCCeEEEeeeeeecCCCCCCCccCCcCCccccccCCC----CCcCeEEEEEEcccCCCCCCCEEEecCCCCCcc
Confidence 55677776543222212234453 4577899997431111000 123679999999998643 66665 4210
Q ss_pred -------------------------------------eEEeccCccEEEEccCCCCCCCCCCCcccccccccce
Q psy8177 230 -------------------------------------LSLWPEKGTAAFWHNLHSSGDGDYYTRHAACPVLTGS 266 (312)
Q Consensus 230 -------------------------------------~~V~P~kGsal~f~n~~~~g~~d~~tlH~gcPV~~G~ 266 (312)
+.+.-++|++|||.. +++|++-|..+..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~~~aGDvl~f~~---------~~~H~S~~N~s~~ 238 (277)
T TIGR02408 174 SCVGETPRDNYKQSLKKQEYGVPDPVSLTKLADQGGISTFTGKAGSAVWFDC---------NTMHGSGSNITPW 238 (277)
T ss_pred cCCccccchhhhhhhhhhhcCCCCHHHHHHHHHhCCceeeccCCceEEEEcc---------ccccCCCCCCCCC
Confidence 124458899999986 8999999998754
No 12
>KOG3710|consensus
Probab=97.87 E-value=0.00011 Score=66.27 Aligned_cols=150 Identities=20% Similarity=0.304 Sum_probs=95.7
Q ss_pred cEEEEcCCCCHHHHHHHH----HHhcC-cCccceeeeCCCCceeeeeeeeecccccCCCC-------------cHHHHHH
Q psy8177 93 RIILYRDVMYDSEIDLIK----KMAQP-RLRRATVQNYKTGELEIANYRISKSAWLREPE-------------HPVIERI 154 (312)
Q Consensus 93 ~I~v~~d~Ls~~Ec~~Li----~la~~-~l~~s~v~~~~~g~~~~~~~R~s~~awl~~~~-------------~~~~~~i 154 (312)
.+.+++|||-.+-=..+. ++... .+.+..+..+... ..+++|..+.+|+..++ ++++...
T Consensus 54 g~~vvd~flg~~~g~~v~~ev~~l~~~G~f~dgql~~~~~~--~~k~iRgd~i~wi~G~e~gc~~i~~L~s~~d~~i~h~ 131 (280)
T KOG3710|consen 54 GICVVDNFLGSETGKFILKEVEALYETGAFRDGQLVSPDAF--HSKDIRGDKITWVGGNEPGCETIMLLPSPIDSVILHC 131 (280)
T ss_pred ceEEEechhhHHHHHHHHHHHHHHHhccCccCceeccCcCC--cchhhccCCceEecCCCCCccceeeecccchhhhhhh
Confidence 467789998776554443 33333 3444444332222 23589999999998543 1122222
Q ss_pred HHHHH-HhcCCCccccccccccccC-CCCcccccccCCCCCCccccccCCCCCeEEEEEEecc---CCC-CCc-eeeecC
Q psy8177 155 SRRVE-HMTGLTTSTAEELQVVNYG-IGGHYEPHYDFARPGEANAFKSLGTGNRVATVLFYMS---DVA-QGG-ATVFTS 227 (312)
Q Consensus 155 ~~RI~-~~tGl~~~~~E~lqv~rY~-~Gg~y~~H~D~~~~~~~~~~~~~~~g~R~aT~L~YLn---Dv~-~GG-~TvFp~ 227 (312)
..|+. .+.| -..-.|+.|. -|-.|-.|.|.-.. ..|..|.+.||| |+. .|| --.||.
T Consensus 132 ~~r~~~~~~g-----RtkAMVAcYPGNGtgYVrHVDNP~g-----------DGRcITcIYYlNqNWD~kv~Gg~Lri~pe 195 (280)
T KOG3710|consen 132 NGRLGSYIIG-----RTKAMVACYPGNGTGYVRHVDNPHG-----------DGRCITCIYYLNQNWDVKVHGGILRIFPE 195 (280)
T ss_pred cccccccccc-----ceeEEEEEecCCCceeeEeccCCCC-----------CceEEEEEEEcccCcceeeccceeEeccC
Confidence 22221 1222 2345688886 47789999998542 469999999999 443 344 445887
Q ss_pred CC---eEEeccCccEEEEccCCCCCCCCCCCcccccccccceeE
Q psy8177 228 LN---LSLWPEKGTAAFWHNLHSSGDGDYYTRHAACPVLTGSNS 268 (312)
Q Consensus 228 ~~---~~V~P~kGsal~f~n~~~~g~~d~~tlH~gcPV~~G~Kw 268 (312)
.. ..|.|+-+..|||++ |.+-.|+..|+..+ ||
T Consensus 196 ~~~~~adieP~fdrLlffwS-------drrnPhev~Pa~~t-ry 231 (280)
T KOG3710|consen 196 GSTTFADIEPKFDRLLFFWS-------DRRNPHEVQPAYAT-RY 231 (280)
T ss_pred CCCcccccCcCCCeEEEEEe-------cCCCcccccccccc-ce
Confidence 64 678899999999997 45677999999975 45
No 13
>PHA02866 Hypothetical protein; Provisional
Probab=97.80 E-value=9.4e-05 Score=69.01 Aligned_cols=130 Identities=15% Similarity=0.150 Sum_probs=90.6
Q ss_pred CccceeeeCCCC-ceeeeeeeeecccccCCCCcHHHHHHHHHHHHh--cCCCccccccccccccCCCCcccccccCCCCC
Q psy8177 117 LRRATVQNYKTG-ELEIANYRISKSAWLREPEHPVIERISRRVEHM--TGLTTSTAEELQVVNYGIGGHYEPHYDFARPG 193 (312)
Q Consensus 117 l~~s~v~~~~~g-~~~~~~~R~s~~awl~~~~~~~~~~i~~RI~~~--tGl~~~~~E~lqv~rY~~Gg~y~~H~D~~~~~ 193 (312)
|.+|.+.+...| .......|.|+.+ +++..++. |+..+ ..-+.-..+.+.++.|..|.+|.-|+|.....
T Consensus 32 w~~s~i~~~~~~i~~~~~~~~k~k~~------~~v~~~v~-~~~~~~~~~~dv~v~~~~t~vk~~kg~~fdn~~~~~~~~ 104 (333)
T PHA02866 32 WEDSDILRHRQFIPCEILVLEKSERT------KQVFGAVK-RVLASSLTDYDVYVCEHLTIVKCFKGVGFDNRFSILTED 104 (333)
T ss_pred cchhhhhhhccCCceeeeehhhhhhh------HHHHHHHH-HHHhccCCCccEEEeeeEEEEEEecccccccceeEEEec
Confidence 888888775555 4445566777665 45666664 33322 22233456789999999999999999986532
Q ss_pred CccccccCCCCCeEEEEEEeccCCCCCceeeecCCCeEEeccCccEEEEccCCCCCCCCCCCcccccccccceeEEee
Q psy8177 194 EANAFKSLGTGNRVATVLFYMSDVAQGGATVFTSLNLSLWPEKGTAAFWHNLHSSGDGDYYTRHAACPVLTGSNSLHS 271 (312)
Q Consensus 194 ~~~~~~~~~~g~R~aT~L~YLnDv~~GG~TvFp~~~~~V~P~kGsal~f~n~~~~g~~d~~tlH~gcPV~~G~KwI~~ 271 (312)
. ...+-.++++||+.++.||+|.++--+-.+--.+-+.|| |....|...-|.+|.|.|+.
T Consensus 105 ~--------~~~~~Y~LvLyL~~p~~GGkt~iyv~~~t~i~~~~DvLF----------DKsl~h~S~~V~~G~K~Val 164 (333)
T PHA02866 105 R--------HRGREYTLVLHLSSPKNGGKTDVCVGDKTVISTADDFLL----------EKRSEQLSNVVQEGEKIVVA 164 (333)
T ss_pred c--------CCceEEEEEEEEeccccCCceEEEeCCCceEeeccceee----------eccccccceeeecCcEEEEE
Confidence 1 245678999999999999999998444444334445554 23678999999999998654
No 14
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=97.68 E-value=2.6e-05 Score=61.02 Aligned_cols=82 Identities=20% Similarity=0.215 Sum_probs=50.2
Q ss_pred ccccccccC---CCCcccccccCCCCCCccccccCCCCCeEEEEEEeccCCCCCceeeecCCC--eEEeccCccEEE-Ec
Q psy8177 170 EELQVVNYG---IGGHYEPHYDFARPGEANAFKSLGTGNRVATVLFYMSDVAQGGATVFTSLN--LSLWPEKGTAAF-WH 243 (312)
Q Consensus 170 E~lqv~rY~---~Gg~y~~H~D~~~~~~~~~~~~~~~g~R~aT~L~YLnDv~~GG~TvFp~~~--~~V~P~kGsal~-f~ 243 (312)
+.+++.+|. .+..+.+|.|.. ++++|++++ +.+|++.|...+ +.|.|..+.+++ +.
T Consensus 2 ~~~~~~~Y~~~~~~~~~~~H~D~~--------------~~~~Til~~----~~~~gL~~~~~~~~~~v~~~~~~~~v~~G 63 (98)
T PF03171_consen 2 SQLRLNRYPPPENGVGIGPHTDDE--------------DGLLTILFQ----DEVGGLQVRDDGEWVDVPPPPGGFIVNFG 63 (98)
T ss_dssp -EEEEEEE-SCCGCEEEEEEEES----------------SSEEEEEE----TSTS-EEEEETTEEEE----TTCEEEEEB
T ss_pred CEEEEEECCCcccCCceeCCCcCC--------------CCeEEEEec----ccchheeccccccccCccCccceeeeece
Confidence 568899999 889999999984 457999999 778888888763 566666655444 44
Q ss_pred cCC--CCCCCCCCCcccccccccceeEE
Q psy8177 244 NLH--SSGDGDYYTRHAACPVLTGSNSL 269 (312)
Q Consensus 244 n~~--~~g~~d~~tlH~gcPV~~G~KwI 269 (312)
+.. -.+...+.++|++|++..|.||.
T Consensus 64 ~~l~~~t~g~~~~~~HrV~~~~~~~R~s 91 (98)
T PF03171_consen 64 DALEILTNGRYPATLHRVVPPTEGERYS 91 (98)
T ss_dssp HHHHHHTTTSS----EEEE--STS-EEE
T ss_pred eeeecccCCccCCceeeeEcCCCCCEEE
Confidence 422 24556788999999999999984
No 15
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=97.56 E-value=0.00031 Score=60.77 Aligned_cols=149 Identities=16% Similarity=0.167 Sum_probs=81.0
Q ss_pred EEEEcCCCCHHHHHHHHHHhcCc----Cc---cceeeeCCCCceeeeeeeeecccccCCCC---cHHH-H-HHHHHHHHh
Q psy8177 94 IILYRDVMYDSEIDLIKKMAQPR----LR---RATVQNYKTGELEIANYRISKSAWLREPE---HPVI-E-RISRRVEHM 161 (312)
Q Consensus 94 I~v~~d~Ls~~Ec~~Li~la~~~----l~---~s~v~~~~~g~~~~~~~R~s~~awl~~~~---~~~~-~-~i~~RI~~~ 161 (312)
.+++.++|+++||+.|.+..... +. ...+.... . .......++.... ..+. . .+...++++
T Consensus 6 yvvi~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (211)
T PF05721_consen 6 YVVIRNVLSPEEVERLREELDRLDDRALEPDQDVSDFFDE--S-----FFGDYTEQLAKSPNFYDLFLHPPRILDLVRAL 78 (211)
T ss_dssp EEEETTSS-HHHHHHHHHHHHHHHHHHTTTTTSCEEEEST--S-----CCCTCCCCGCCCHHHHHHHHTHHHHHHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHHHHHHHhhhhcccccccccccc--c-----cccccccccccchhhHHHHhhHHHHHHHHHHh
Confidence 36789999999999998877542 11 11111100 0 0001111111000 1111 2 566667778
Q ss_pred cCCCcc----cccccc-ccc-cCCCCcc-cccccCCCCCCccccccCCCCCeEEEEEEeccCCC-CCceeee-cCC----
Q psy8177 162 TGLTTS----TAEELQ-VVN-YGIGGHY-EPHYDFARPGEANAFKSLGTGNRVATVLFYMSDVA-QGGATVF-TSL---- 228 (312)
Q Consensus 162 tGl~~~----~~E~lq-v~r-Y~~Gg~y-~~H~D~~~~~~~~~~~~~~~g~R~aT~L~YLnDv~-~GG~TvF-p~~---- 228 (312)
+|-... ....++ +.+ =++|... .||.|....... ...+.+|+.|+|.|+. +.|.+.+ |.-
T Consensus 79 ~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~wH~D~~~~~~~-------~~~~~~~~wi~L~d~~~~~G~~~v~pGSH~~~ 151 (211)
T PF05721_consen 79 LGSDVFVQNWLQSMYQDIVKPPGPGAAVQPWHQDAPYWHTD-------PPENQLTVWIALDDITPENGPLEVVPGSHKWG 151 (211)
T ss_dssp HTSSEEEE--EEEEEEEEEE-TTTTC-EEEEBEHHHCSTEE-------SSSCEEEEEEESS-BBTTCTCEEEETTGCCSC
T ss_pred hCCcchhhhhhHHHHHhhhhccccCCCCCCCCCCCcccccC-------CccceEEEEEeeccCCcccCceEeecCCcCCC
Confidence 887532 122221 222 2246655 899997653210 1578899999999974 4455554 431
Q ss_pred ---------------------------CeEEeccCccEEEEccCCCCCCCCCCCcccccccccc
Q psy8177 229 ---------------------------NLSLWPEKGTAAFWHNLHSSGDGDYYTRHAACPVLTG 265 (312)
Q Consensus 229 ---------------------------~~~V~P~kGsal~f~n~~~~g~~d~~tlH~gcPV~~G 265 (312)
-+.+..++|++|||.. +++|++-|-.+.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gdvl~~~~---------~~~H~s~~N~s~ 206 (211)
T PF05721_consen 152 VEPHEERFPEEDFPEEDDEESDEDEDEWVPVPMKAGDVLFFHS---------RLIHGSGPNTSD 206 (211)
T ss_dssp CEEECCCCCCCCCCCCHHHHHHHHCSGCEEE-BSTTEEEEEET---------TSEEEEE-B-SS
T ss_pred cccccccccccccccccccccccccCceEEeecCCCeEEEEcC---------CccccCCCCCCc
Confidence 1678889999999985 899999987653
No 16
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.0012 Score=61.00 Aligned_cols=148 Identities=18% Similarity=0.203 Sum_probs=89.9
Q ss_pred CCCCHHHHHHHHHHhcCcCccceeeeCCCCceeeeeeeeecccccCC--CCc-HHHHHH--HHHHHH------hcCCCcc
Q psy8177 99 DVMYDSEIDLIKKMAQPRLRRATVQNYKTGELEIANYRISKSAWLRE--PEH-PVIERI--SRRVEH------MTGLTTS 167 (312)
Q Consensus 99 d~Ls~~Ec~~Li~la~~~l~~s~v~~~~~g~~~~~~~R~s~~awl~~--~~~-~~~~~i--~~RI~~------~tGl~~~ 167 (312)
+.++++..+.+.+..-..+..+.+..+.. ......++..+.-|+.+ ... +..+.+ .+-++. .+|..-.
T Consensus 55 ~li~r~~~~~~~e~i~~~~~~~~i~r~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~es~r~~~~~~~~lg~l~~ 133 (252)
T COG3751 55 ELITRQVREELGEEIAEAFKEAAILRGGQ-IQVFAFLSGDLKDELDPTRSPNLPVQRYLEFSESIRFILGLPQLLGILDV 133 (252)
T ss_pred hhcCHHHHHHHHhhhhhhccccceecccc-ceeeeecchhhhhhhcccccccchHHHHHHHHHHHHHHhchhhhcCccce
Confidence 55556666666555544444455444322 22334455555556552 111 111111 111222 2332212
Q ss_pred ccccccccccCCCCcccccccCCCCCCccccccCCCCCeEEEEEEeccC---CCCCcee-eecCC---------CeEEec
Q psy8177 168 TAEELQVVNYGIGGHYEPHYDFARPGEANAFKSLGTGNRVATVLFYMSD---VAQGGAT-VFTSL---------NLSLWP 234 (312)
Q Consensus 168 ~~E~lqv~rY~~Gg~y~~H~D~~~~~~~~~~~~~~~g~R~aT~L~YLnD---v~~GG~T-vFp~~---------~~~V~P 234 (312)
.--..|+.-|.+|.+|..|-|.... ...|.+|.++|++. .+-||+. .|+.+ -..|.|
T Consensus 134 ~~ve~~~~~y~~G~~l~~H~D~~~~----------~~~R~~~yv~y~~r~wkpe~GGeL~l~~s~~~~~~~~~~~~ti~P 203 (252)
T COG3751 134 SEVEGQITVYNPGCFLLKHDDNGRD----------KDIRLATYVYYLTREWKPEYGGELRLFHSLQKNNTAADSFKTIAP 203 (252)
T ss_pred eeeeeeeeEecCCceeEeecccCCC----------ccceEEEEEeccCCCCCcCCCCceeecccccccccccccccccCC
Confidence 2237899999999999999998764 26899999999997 6789999 78764 368899
Q ss_pred cCccEEEEccCCCCCCCCCCCcccccccc
Q psy8177 235 EKGTAAFWHNLHSSGDGDYYTRHAACPVL 263 (312)
Q Consensus 235 ~kGsal~f~n~~~~g~~d~~tlH~gcPV~ 263 (312)
+-++++||..-. ..+.|.+.+|.
T Consensus 204 ~fn~lv~F~s~~------~Hs~h~V~~~~ 226 (252)
T COG3751 204 VFNSLVFFKSRP------SHSVHSVEEPY 226 (252)
T ss_pred CCceEEEEEecC------Cccceeccccc
Confidence 999999997621 12566666653
No 17
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function.
Probab=96.93 E-value=0.0024 Score=55.03 Aligned_cols=88 Identities=24% Similarity=0.288 Sum_probs=65.3
Q ss_pred ccccccccCCCCcccccccCCCCCCccccccCCCCCeEEEEEEeccC---CCCCceeeecCC-------CeEEeccCccE
Q psy8177 170 EELQVVNYGIGGHYEPHYDFARPGEANAFKSLGTGNRVATVLFYMSD---VAQGGATVFTSL-------NLSLWPEKGTA 239 (312)
Q Consensus 170 E~lqv~rY~~Gg~y~~H~D~~~~~~~~~~~~~~~g~R~aT~L~YLnD---v~~GG~TvFp~~-------~~~V~P~kGsa 239 (312)
....+++|+.|++=..|.|...... |. +-+.+-||+ .+.|||.|.-.. ...+.+.+|+|
T Consensus 62 ptplllrY~~gdyn~LHqdlyGe~v---FP--------lQvv~lLs~Pg~DftGGEFVltEQrPR~QSR~~V~~L~qGda 130 (173)
T PF09859_consen 62 PTPLLLRYGPGDYNCLHQDLYGEHV---FP--------LQVVILLSEPGEDFTGGEFVLTEQRPRMQSRAMVLPLRQGDA 130 (173)
T ss_pred CchhhheeCCCCccccccCCCCCcc---cC--------eEEEEEcCCCCCcccCceEEEEEecCCccCccccCCcCCCCE
Confidence 3456899999999999999753321 11 346777998 458999998542 57888999999
Q ss_pred EEEccCCC-----CCCCCCCCcccccccccceeE
Q psy8177 240 AFWHNLHS-----SGDGDYYTRHAACPVLTGSNS 268 (312)
Q Consensus 240 l~f~n~~~-----~g~~d~~tlH~gcPV~~G~Kw 268 (312)
++|.--+. .|-.--...|++.+|.+|.++
T Consensus 131 ~if~t~~RPv~G~rG~yRv~~RHgVS~vrsG~R~ 164 (173)
T PF09859_consen 131 LIFATNHRPVRGARGYYRVNMRHGVSRVRSGERH 164 (173)
T ss_pred EEEecCCCCcCCCccceecccccccccccccceE
Confidence 99974432 233445678999999999988
No 18
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=96.79 E-value=0.01 Score=56.05 Aligned_cols=166 Identities=15% Similarity=0.080 Sum_probs=89.2
Q ss_pred eeehccCCcEEEEcCCCCHHHHHHHHHHhcCcCc-cceeeeCCCCceeeeeeeeecccccCCCCcHHH------HHHHHH
Q psy8177 85 EEEAYLQPRIILYRDVMYDSEIDLIKKMAQPRLR-RATVQNYKTGELEIANYRISKSAWLREPEHPVI------ERISRR 157 (312)
Q Consensus 85 ~E~ls~~P~I~v~~d~Ls~~Ec~~Li~la~~~l~-~s~v~~~~~g~~~~~~~R~s~~awl~~~~~~~~------~~i~~R 157 (312)
++....+-|| ++.++||++|++.|++.++..+. ++.......+. ..|.. |-....++.+ .+|...
T Consensus 8 i~~y~e~Gyv-~~~~~~s~eei~~L~~~~~~~l~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~l~~~~~l~~~ 79 (288)
T TIGR01762 8 RQSFEKNGFI-GPFTLYSPEEMKETWKRIRLRLLDRSAAPYQDLGG----TNIAN---YDRHLDDDFLASHICRPEICHR 79 (288)
T ss_pred HHHHHhCCEE-eCcCCCCHHHHHHHHHHHHHHhhccccccccCCCC----ceeEe---eeecccCHHHHHHhcCHHHHHH
Confidence 3445567765 68999999999999988754332 11110000011 11111 1111112222 244455
Q ss_pred HHHhcCCCccccccccccccCCCCcccccccCCCCCCc---cc-cccCCCCCeEEEEEEeccCCC-CCceeee-cCC---
Q psy8177 158 VEHMTGLTTSTAEELQVVNYGIGGHYEPHYDFARPGEA---NA-FKSLGTGNRVATVLFYMSDVA-QGGATVF-TSL--- 228 (312)
Q Consensus 158 I~~~tGl~~~~~E~lqv~rY~~Gg~y~~H~D~~~~~~~---~~-~~~~~~g~R~aT~L~YLnDv~-~GG~TvF-p~~--- 228 (312)
+++++|-++...-.--+.+...++.+.||.|...-... +. +.......+.+|+.+.|.|+. +-|.+.| |.-
T Consensus 80 ~~~llG~~v~l~~~~~~~K~pg~~~~~wHQD~~y~~~~~~~~~~~p~~~~~~~~vt~wiaLdd~t~eNG~L~viPGSH~~ 159 (288)
T TIGR01762 80 VESILGPNVLCWRTEFFPKYPGDEGTDWHQADTFANASGKPQLVWPENEEFGGTITVWTAFTDATIENGCMQFIPGTHNS 159 (288)
T ss_pred HHHHhCCcEEeeeceeeeeCCCCCCCCCCccCcccccCCcccccccccCCCCCeEEEEEEcccCCcccCCEEEECCCCCC
Confidence 66777865432222223444444457899996432211 00 100001247899999999865 2344333 110
Q ss_pred ------------------------------------------------CeEEeccCccEEEEccCCCCCCCCCCCccccc
Q psy8177 229 ------------------------------------------------NLSLWPEKGTAAFWHNLHSSGDGDYYTRHAAC 260 (312)
Q Consensus 229 ------------------------------------------------~~~V~P~kGsal~f~n~~~~g~~d~~tlH~gc 260 (312)
-+.+.=++|+++||.. +++|++.
T Consensus 160 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~l~~d~~~~~~~~~~v~~~lkaGd~~~f~~---------~t~HgS~ 230 (288)
T TIGR01762 160 MNYDETRRMTFEPDANNSVVKGGVRRGFFGYDYRQLQIDENWKPDEASAVPMQMKAGQFIIFWS---------TLMHASY 230 (288)
T ss_pred CCCCcccccccCccccccccccccccccccccchhhcccccCCccccceeeeeeCCceEEEECC---------CceecCC
Confidence 1234447899999975 8999999
Q ss_pred cccccee
Q psy8177 261 PVLTGSN 267 (312)
Q Consensus 261 PV~~G~K 267 (312)
|-.+..+
T Consensus 231 ~N~S~~~ 237 (288)
T TIGR01762 231 PNSGESQ 237 (288)
T ss_pred CCCCCCc
Confidence 9998654
No 19
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=95.79 E-value=0.014 Score=46.20 Aligned_cols=67 Identities=22% Similarity=0.339 Sum_probs=39.3
Q ss_pred cccCCCCcccccccCCCCCCccccccCCCCCeEEEEEEeccCCCCCceeeecCC---------------------CeEEe
Q psy8177 175 VNYGIGGHYEPHYDFARPGEANAFKSLGTGNRVATVLFYMSDVAQGGATVFTSL---------------------NLSLW 233 (312)
Q Consensus 175 ~rY~~Gg~y~~H~D~~~~~~~~~~~~~~~g~R~aT~L~YLnDv~~GG~TvFp~~---------------------~~~V~ 233 (312)
..|..|++-.+|.- .+..++..+||+-.+..|.+.|.+- ...|+
T Consensus 5 ni~~~g~~~~~H~H---------------~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (101)
T PF13759_consen 5 NIYRKGGYNEPHNH---------------PNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVE 69 (101)
T ss_dssp EEE-TT--EEEE-----------------TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE-
T ss_pred EEeCCCCccCceEC---------------CCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeC
Confidence 44677887777752 2346889999998888888888431 37889
Q ss_pred ccCccEEEEccCCCCCCCCCCCcccccccccc
Q psy8177 234 PEKGTAAFWHNLHSSGDGDYYTRHAACPVLTG 265 (312)
Q Consensus 234 P~kGsal~f~n~~~~g~~d~~tlH~gcPV~~G 265 (312)
|+.|++|+|++ ...|++-|-...
T Consensus 70 p~~G~lvlFPs---------~l~H~v~p~~~~ 92 (101)
T PF13759_consen 70 PEEGDLVLFPS---------WLWHGVPPNNSD 92 (101)
T ss_dssp --TTEEEEEET---------TSEEEE----SS
T ss_pred CCCCEEEEeCC---------CCEEeccCcCCC
Confidence 99999999997 678999888754
No 20
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=95.68 E-value=0.058 Score=47.08 Aligned_cols=147 Identities=19% Similarity=0.248 Sum_probs=73.3
Q ss_pred EEEEcCCCCHHHHHHHHHHhcC--cCccceeeeCCCCceee---------------eeeeeecc-cccCC---CCcHHHH
Q psy8177 94 IILYRDVMYDSEIDLIKKMAQP--RLRRATVQNYKTGELEI---------------ANYRISKS-AWLRE---PEHPVIE 152 (312)
Q Consensus 94 I~v~~d~Ls~~Ec~~Li~la~~--~l~~s~v~~~~~g~~~~---------------~~~R~s~~-awl~~---~~~~~~~ 152 (312)
+.+++||||++|.+.|++.... .+...+... ++... ..++.+.. .+-.. .-.+.+.
T Consensus 2 ~~~~~~fls~~e~~~l~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~y~y~~~~~~~~~~~~~~p~~l~ 78 (194)
T PF13532_consen 2 LYYIPNFLSEEEAAELLNELRESAPFRQPTYPM---GKVYSLPRKLCGGLSWVGDGPSYRYSGKRPVRSKPWPPFPEWLS 78 (194)
T ss_dssp EEEETTSS-HHHHHHHHHHHHHHS--B-GCCCC---CCECCECCE-SSEEEEEECT--CCCTCC-EECCCEBSCCHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHhhCCCcCCeEcC---CCEEccceecceeeEEECCCCCeEcCCccccCCCCCCCccHHHH
Confidence 5789999999999999888763 121111110 11000 01111110 00000 1123455
Q ss_pred HHHHHHHHhcC-CCccccccccccccCCCCcccccccCCCCCCccccccCCCCCeEEEEEEeccCCCCCceeeec-----
Q psy8177 153 RISRRVEHMTG-LTTSTAEELQVVNYGIGGHYEPHYDFARPGEANAFKSLGTGNRVATVLFYMSDVAQGGATVFT----- 226 (312)
Q Consensus 153 ~i~~RI~~~tG-l~~~~~E~lqv~rY~~Gg~y~~H~D~~~~~~~~~~~~~~~g~R~aT~L~YLnDv~~GG~TvFp----- 226 (312)
.+.+++...++ ..........|..|..|+.-.+|.|.... +.+..++|+-+ |+..+|-
T Consensus 79 ~~~~~~~~~~~~~~~~~~n~~liN~Y~~g~~i~~H~D~~~~---------~~~~~I~slSL-------G~~~~~~f~~~~ 142 (194)
T PF13532_consen 79 RLLERLVEATGIPPGWRPNQCLINYYRDGSGIGPHSDDEEY---------GFGPPIASLSL-------GSSRVFRFRNKS 142 (194)
T ss_dssp HHHHHHHHHHT-SHSS--SEEEEEEESSTT-EEEE---TTC----------CCSEEEEEEE-------ES-EEEEEEECG
T ss_pred HHHHHHHHHhccccCCCCCEEEEEecCCCCCcCCCCCcccc---------cCCCcEEEEEE-------ccCceEEEeecc
Confidence 66666665444 21123345567789999988999998733 13667777665 3333331
Q ss_pred --CCCeEEeccCccEEEEccCCCCCCCCCCCcccccccccc
Q psy8177 227 --SLNLSLWPEKGTAAFWHNLHSSGDGDYYTRHAACPVLTG 265 (312)
Q Consensus 227 --~~~~~V~P~kGsal~f~n~~~~g~~d~~tlH~gcPV~~G 265 (312)
...+.|.-..|+++++.. ...... |+..|+..+
T Consensus 143 ~~~~~~~~~L~~gsl~vm~g-----~~r~~~-H~I~~~~~~ 177 (194)
T PF13532_consen 143 DDDEPIEVPLPPGSLLVMSG-----EARYDW-HGIPPVKKD 177 (194)
T ss_dssp GTS-EEEEEE-TTEEEEEET-----THHHHE-EEE-S-SCE
T ss_pred CCCccEEEEcCCCCEEEeCh-----HHhhhe-eEcccccCC
Confidence 124788888999999973 333445 888888764
No 21
>KOG3844|consensus
Probab=95.40 E-value=0.11 Score=50.71 Aligned_cols=159 Identities=23% Similarity=0.307 Sum_probs=102.1
Q ss_pred ceeeehccCCcE-EEEcCCCCHHHHHHHHHHhcC--cCccceeeeCCCCceeeeeeeeecc---cccCCCCcH-------
Q psy8177 83 LKEEEAYLQPRI-ILYRDVMYDSEIDLIKKMAQP--RLRRATVQNYKTGELEIANYRISKS---AWLREPEHP------- 149 (312)
Q Consensus 83 lk~E~ls~~P~I-~v~~d~Ls~~Ec~~Li~la~~--~l~~s~v~~~~~g~~~~~~~R~s~~---awl~~~~~~------- 149 (312)
+|-|.-...|+- +++|+|+++...+.+..-... .+.+- +..-+|.-++ +-+..-+.+
T Consensus 26 ~kk~~ekngPf~h~~i~~~vnd~~l~~vrkei~~~~~f~~k----------~tDlyr~~QtgdL~nl~~le~p~lf~~r~ 95 (476)
T KOG3844|consen 26 LKKEYEKNGPFNHFIIRDFVNDSLLRVVRKEIHGSIHFTEK----------ETDLYRVLQTGDLANLEGLEFPALFSFRD 95 (476)
T ss_pred HhhhhhccCCCcceeeeccCCHHHHHHHHHHHhhccchhhh----------cchhhheeccccccccccccchhHHHHHH
Confidence 344433445543 568999999988888754433 23211 1122332222 111111222
Q ss_pred -HHHHHHHHHHHhcCCCccccccccccccCCCCcccccccCCCCCCccccccCCCCCeEEEEEEeccCCC----CCceee
Q psy8177 150 -VIERISRRVEHMTGLTTSTAEELQVVNYGIGGHYEPHYDFARPGEANAFKSLGTGNRVATVLFYMSDVA----QGGATV 224 (312)
Q Consensus 150 -~~~~i~~RI~~~tGl~~~~~E~lqv~rY~~Gg~y~~H~D~~~~~~~~~~~~~~~g~R~aT~L~YLnDv~----~GG~Tv 224 (312)
+.+.....|++++|--...--++....|..|.|--.|-|-. +.|...+++||-|.. -||+..
T Consensus 96 ~Lyke~r~~~q~vtg~~s~sk~Dms~s~Y~kgd~LL~HDD~i-------------etRriaFilYL~~~Dwds~~GG~L~ 162 (476)
T KOG3844|consen 96 SLYKEARGEIQDVTGGLSTSKIDMSGSYYRKGDHLLCHDDVI-------------ETRRIAFILYLVDPDWDSEYGGELR 162 (476)
T ss_pred HHHHHHHHHHHhccCccccceeeeceeeeeccceeccccccc-------------cceEEEEEEEecCcccccccCceeE
Confidence 22344455677886544555678889999999999987663 678889999999765 377776
Q ss_pred -ecCC--------CeEEeccCccEEEEccCCCCCCCCCCCccccccccccee------EEee
Q psy8177 225 -FTSL--------NLSLWPEKGTAAFWHNLHSSGDGDYYTRHAACPVLTGSN------SLHS 271 (312)
Q Consensus 225 -Fp~~--------~~~V~P~kGsal~f~n~~~~g~~d~~tlH~gcPV~~G~K------wI~~ 271 (312)
||.. -.++.|+-...+||.- -|-+.|.+.-|++-.+ |+|-
T Consensus 163 Lf~~d~~~~P~s~~asl~P~~Nql~fFeV-------sp~SFH~V~Ev~sde~RlSIsGWfH~ 217 (476)
T KOG3844|consen 163 LFPDDCPSQPKSVAASLEPQWNQLVFFEV-------SPISFHDVEEVLSDEPRLSISGWFHF 217 (476)
T ss_pred ecccccccCccchhhccCcccceEEEEEe-------cccchhhHHHHhccCcceeEeeeecC
Confidence 6553 2458899999999973 3588999999988765 7665
No 22
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=94.66 E-value=0.088 Score=45.96 Aligned_cols=53 Identities=21% Similarity=0.278 Sum_probs=43.9
Q ss_pred EEEEEeccC-CCCCceeeecC-----CCeEEeccCccEEEEccCCCCCCCCCCCccccccccc-----ceeE
Q psy8177 208 ATVLFYMSD-VAQGGATVFTS-----LNLSLWPEKGTAAFWHNLHSSGDGDYYTRHAACPVLT-----GSNS 268 (312)
Q Consensus 208 aT~L~YLnD-v~~GG~TvFp~-----~~~~V~P~kGsal~f~n~~~~g~~d~~tlH~gcPV~~-----G~Kw 268 (312)
.|+++-|.- ...||..++|. .|++|.|+.|++|++-. ....|+..||.. |.+|
T Consensus 100 ~~~~~t~~~gd~~~g~l~lp~~~~~~~g~~~~~~~GtVl~~~~--------~~~~Hgvtpv~~~~~~~~~R~ 163 (171)
T PF12851_consen 100 YDVLCTLGRGDYDGGRLELPGLDPNILGVAFAYQPGTVLIFCA--------KRELHGVTPVESPNRNHGTRI 163 (171)
T ss_pred eEEEEecCCccccCceEeccccccccCCEEEecCCCcEEEEcc--------cceeeecCcccCCCCCCCeEE
Confidence 566666653 38899999999 99999999999999974 257899999997 6666
No 23
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=94.56 E-value=0.087 Score=47.25 Aligned_cols=71 Identities=23% Similarity=0.362 Sum_probs=53.8
Q ss_pred ccccccccCCCCcccccccCCCCCCccccccCCCCCeEEEEEEeccCCCCCceeeec--CC-------------------
Q psy8177 170 EELQVVNYGIGGHYEPHYDFARPGEANAFKSLGTGNRVATVLFYMSDVAQGGATVFT--SL------------------- 228 (312)
Q Consensus 170 E~lqv~rY~~Gg~y~~H~D~~~~~~~~~~~~~~~g~R~aT~L~YLnDv~~GG~TvFp--~~------------------- 228 (312)
...=+..+..||+-..|.- .+-.++..+||+-...+|...|- ..
T Consensus 96 ~~~W~ni~~~Gg~h~~H~H---------------p~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~ 160 (201)
T TIGR02466 96 QKAWVNILPQGGTHSPHLH---------------PGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQR 160 (201)
T ss_pred eeEeEEEcCCCCccCceEC---------------CCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCc
Confidence 3444667788998777751 23468899999988888888873 22
Q ss_pred CeEEeccCccEEEEccCCCCCCCCCCCccccccccc
Q psy8177 229 NLSLWPEKGTAAFWHNLHSSGDGDYYTRHAACPVLT 264 (312)
Q Consensus 229 ~~~V~P~kGsal~f~n~~~~g~~d~~tlH~gcPV~~ 264 (312)
.+.|+|+.|.+|+|++ ..+|++-|-..
T Consensus 161 ~~~v~P~~G~lvlFPS---------~L~H~v~p~~~ 187 (201)
T TIGR02466 161 FVYVPPQEGRVLLFES---------WLRHEVPPNES 187 (201)
T ss_pred cEEECCCCCeEEEECC---------CCceecCCCCC
Confidence 2368999999999998 67899888764
No 24
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=91.33 E-value=3.5 Score=37.33 Aligned_cols=95 Identities=18% Similarity=0.278 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhcCCCccccccccccccCCCCcccccccCCCCCCccccccCCCCCeEEEEEEeccCCCCCceeeecC-
Q psy8177 149 PVIERISRRVEHMTGLTTSTAEELQVVNYGIGGHYEPHYDFARPGEANAFKSLGTGNRVATVLFYMSDVAQGGATVFTS- 227 (312)
Q Consensus 149 ~~~~~i~~RI~~~tGl~~~~~E~lqv~rY~~Gg~y~~H~D~~~~~~~~~~~~~~~g~R~aT~L~YLnDv~~GG~TvFp~- 227 (312)
+.+..|.++++..+|...-..+..-|..|..|..-.+|.|...... +.-++++-+ |..-+|-.
T Consensus 95 ~~l~~L~~~~~~~~~~~~~~p~a~LvN~Y~~G~~mg~H~D~~E~~~---------~~pI~SvSL-------G~~~~F~~~ 158 (213)
T PRK15401 95 ASFLALAQRAAAAAGFPGFQPDACLINRYAPGAKLSLHQDKDERDF---------RAPIVSVSL-------GLPAVFQFG 158 (213)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCEEEEEeccCcCccccccCCCcccC---------CCCEEEEeC-------CCCeEEEec
Confidence 3678899999888886433445677888999998999999743211 122333321 22222211
Q ss_pred ------CCeEEeccCccEEEEccCCCCCCCCCCCcccccccccc
Q psy8177 228 ------LNLSLWPEKGTAAFWHNLHSSGDGDYYTRHAACPVLTG 265 (312)
Q Consensus 228 ------~~~~V~P~kGsal~f~n~~~~g~~d~~tlH~gcPV~~G 265 (312)
...+|.-..|++|+|. |.. ...+|+.-|+..|
T Consensus 159 ~~~~~~~~~~l~L~~Gdllvm~-----G~s-r~~~HgVp~~~~~ 196 (213)
T PRK15401 159 GLKRSDPLQRILLEHGDVVVWG-----GPS-RLRYHGILPLKAG 196 (213)
T ss_pred ccCCCCceEEEEeCCCCEEEEC-----chH-hheeccCCcCCCC
Confidence 1357888999999995 332 2456888887655
No 25
>PHA02923 hypothetical protein; Provisional
Probab=90.53 E-value=0.62 Score=43.98 Aligned_cols=97 Identities=9% Similarity=0.089 Sum_probs=66.7
Q ss_pred cHHHHHHHHHHHHhcCC--CccccccccccccCCCCcccccccCCCCCCccccccCCCCCeEEEEEEeccCCCCCceeee
Q psy8177 148 HPVIERISRRVEHMTGL--TTSTAEELQVVNYGIGGHYEPHYDFARPGEANAFKSLGTGNRVATVLFYMSDVAQGGATVF 225 (312)
Q Consensus 148 ~~~~~~i~~RI~~~tGl--~~~~~E~lqv~rY~~Gg~y~~H~D~~~~~~~~~~~~~~~g~R~aT~L~YLnDv~~GG~TvF 225 (312)
+.+...|++-|-+-+.. +..-...+.+..|..|.+ .|. . ..+.-..+++||+..+.||.|.|
T Consensus 43 ~di~~~ir~liy~elk~v~~V~V~n~iT~ikYekgd~--~~l--~------------~~~~~y~LvLyL~~p~~GGt~i~ 106 (315)
T PHA02923 43 IDISECIREILYKQFKNVRNIEVSSTISFIKYNPFND--TTL--T------------DDNMGYYLVIYLNRPKSGKTLIY 106 (315)
T ss_pred hHHHHHHHHHHHHhccCcceEEEeceEEEEEEcCCCc--cee--e------------cCceEEEEEEEEeccCCCCeEEE
Confidence 45667776666543222 223456788999999984 111 0 13477889999999999999999
Q ss_pred cCCCeEEeccCccEEEEccCCCCCCCCCCCcccccccccceeEEee
Q psy8177 226 TSLNLSLWPEKGTAAFWHNLHSSGDGDYYTRHAACPVLTGSNSLHS 271 (312)
Q Consensus 226 p~~~~~V~P~kGsal~f~n~~~~g~~d~~tlH~gcPV~~G~KwI~~ 271 (312)
+..+ .+--.+-+.|| - ....|...-|.+|.|.|+-
T Consensus 107 ~~~~-t~i~~~~DvLF-d---------Ksl~h~s~~V~~G~K~VAl 141 (315)
T PHA02923 107 PTPE-TVITSSEDIMF-S---------KSLNFRFENVKRGYKLVMC 141 (315)
T ss_pred ecCC-CeEeeccceee-e---------cccccceeeeecCcEEEEE
Confidence 8877 44334445544 2 3677999999999999653
No 26
>KOG3200|consensus
Probab=82.75 E-value=3.3 Score=36.42 Aligned_cols=94 Identities=23% Similarity=0.320 Sum_probs=58.2
Q ss_pred hccCCcEEEEcCCCCHHHHHHHHHHhc----CcCcc---ceeeeCCCCceeeeeeeeecccccCCCCcHHHHHHHHHHHH
Q psy8177 88 AYLQPRIILYRDVMYDSEIDLIKKMAQ----PRLRR---ATVQNYKTGELEIANYRISKSAWLREPEHPVIERISRRVEH 160 (312)
Q Consensus 88 ls~~P~I~v~~d~Ls~~Ec~~Li~la~----~~l~~---s~v~~~~~g~~~~~~~R~s~~awl~~~~~~~~~~i~~RI~~ 160 (312)
+-..|.++.+.|||++||-..+++-.+ ++|+- -...+ -|..+ .+...+.++-.+.++.+...|.+
T Consensus 8 V~~~pt~~YIPnfIt~EEe~~~lshIe~ap~pkW~~L~NRRLqN--yGGvv------h~~glipeelP~wLq~~v~kinn 79 (224)
T KOG3200|consen 8 VKSAPTMIYIPNFITEEEENLYLSHIENAPQPKWRVLANRRLQN--YGGVV------HKTGLIPEELPPWLQYYVDKINN 79 (224)
T ss_pred ecccceEEEcCCccChHHHHHHHHHHhcCCCchhHHHHhhhhhh--cCCcc------ccCCcCccccCHHHHHHHHHhhc
Confidence 345778899999999999998877654 23321 11111 01110 12233443445666777777763
Q ss_pred hcCCCccccccccccccCCCCcccccccCC
Q psy8177 161 MTGLTTSTAEELQVVNYGIGGHYEPHYDFA 190 (312)
Q Consensus 161 ~tGl~~~~~E~lqv~rY~~Gg~y~~H~D~~ 190 (312)
+|+=...+....|..|.+|+---||.|+-
T Consensus 80 -lglF~s~~NHVLVNeY~pgqGImPHtDGP 108 (224)
T KOG3200|consen 80 -LGLFKSPANHVLVNEYLPGQGIMPHTDGP 108 (224)
T ss_pred -ccccCCCcceeEeecccCCCCcCcCCCCC
Confidence 34433355667788899999999999974
No 27
>KOG3959|consensus
Probab=82.62 E-value=1.6 Score=39.99 Aligned_cols=95 Identities=15% Similarity=0.197 Sum_probs=55.1
Q ss_pred CCcEEEEcCCCCHHHHHHHHHHhcC-cCccceeee--CCCCc---eeeeeeeeecccccCCCCcHHHHHHHHHHHHhcCC
Q psy8177 91 QPRIILYRDVMYDSEIDLIKKMAQP-RLRRATVQN--YKTGE---LEIANYRISKSAWLREPEHPVIERISRRVEHMTGL 164 (312)
Q Consensus 91 ~P~I~v~~d~Ls~~Ec~~Li~la~~-~l~~s~v~~--~~~g~---~~~~~~R~s~~awl~~~~~~~~~~i~~RI~~~tGl 164 (312)
-|-|.++|||||.+|=+.|+++... .|..|.-.. .+-|- ....+.|+..-+= -...++.+.+|++++.++
T Consensus 71 ~pG~~lie~Fls~~Eea~l~~~~D~~pW~~SQSGRRKQdyGPKvNFkk~Klkt~~F~G----~P~~~~~v~rrm~~yp~l 146 (306)
T KOG3959|consen 71 IPGLTLIENFLSESEEAKLLNMIDTVPWAQSQSGRRKQDYGPKVNFKKKKLKTDTFVG----MPEYADMVLRRMSEYPVL 146 (306)
T ss_pred cCCeeehhhhhccchHhHHHHHhccCchhhhcccccccccCCccchhhhhhccCcccC----CchHHHHHHHHhhccchh
Confidence 3789999999999999999998764 232221111 11111 1122333333332 235677788888887665
Q ss_pred Ccccccccc--ccccCC--CCcccccccCCC
Q psy8177 165 TTSTAEELQ--VVNYGI--GGHYEPHYDFAR 191 (312)
Q Consensus 165 ~~~~~E~lq--v~rY~~--Gg~y~~H~D~~~ 191 (312)
.. .-++. =+-|.+ |..-.||.|-..
T Consensus 147 ~g--fqp~EqCnLeYep~kgsaIdpH~DD~W 175 (306)
T KOG3959|consen 147 KG--FQPFEQCNLEYEPVKGSAIDPHQDDMW 175 (306)
T ss_pred hc--cCcHHHcCcccccccCCccCccccchh
Confidence 32 11111 133664 788899999654
No 28
>COG3826 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.97 E-value=5.6 Score=35.28 Aligned_cols=88 Identities=18% Similarity=0.188 Sum_probs=59.8
Q ss_pred ccccccccCCCCcccccccCCCCCCccccccCCCCCeEEEEEEeccCCC---CCceeeecCC-------CeEEeccCccE
Q psy8177 170 EELQVVNYGIGGHYEPHYDFARPGEANAFKSLGTGNRVATVLFYMSDVA---QGGATVFTSL-------NLSLWPEKGTA 239 (312)
Q Consensus 170 E~lqv~rY~~Gg~y~~H~D~~~~~~~~~~~~~~~g~R~aT~L~YLnDv~---~GG~TvFp~~-------~~~V~P~kGsa 239 (312)
....++.|++|++--.|.|...... |. +-+.|-|+|++ .|||.+.-.. .-.|.-.+|.+
T Consensus 124 pTpLlLqYgpgD~NcLHQDLYGelv---FP--------LQvailLsePg~DfTGGEF~lvEQRPR~QSr~~vvpLrqG~g 192 (236)
T COG3826 124 PTPLLLQYGPGDYNCLHQDLYGELV---FP--------LQVAILLSEPGTDFTGGEFVLVEQRPRMQSRPTVVPLRQGDG 192 (236)
T ss_pred CCceeEEecCCccchhhhhhhhcee---ee--------eeEEEeccCCCCcccCceEEEEecccccccCCceeeccCCce
Confidence 3445789999999889999753211 11 34667799864 7999887432 46777789999
Q ss_pred EEEccCCC-----CCCCCCCCcccccccccceeE
Q psy8177 240 AFWHNLHS-----SGDGDYYTRHAACPVLTGSNS 268 (312)
Q Consensus 240 l~f~n~~~-----~g~~d~~tlH~gcPV~~G~Kw 268 (312)
++|---.. .|..-....|+..-+.+|.++
T Consensus 193 ~vFavr~RPv~gtrG~~r~~lRHGvS~lRSG~R~ 226 (236)
T COG3826 193 VVFAVRDRPVQGTRGWYRVPLRHGVSRLRSGERH 226 (236)
T ss_pred EEEEeecCcccCccCccccchhcchhhhhcccce
Confidence 99964321 233334456888888888876
No 29
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=73.92 E-value=45 Score=29.79 Aligned_cols=85 Identities=18% Similarity=0.141 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhcCCCccccccccccccCCCCcccccccCCCCCCccccccCCCCCeEEEEEEeccCCC-CCceeeecC
Q psy8177 149 PVIERISRRVEHMTGLTTSTAEELQVVNYGIGGHYEPHYDFARPGEANAFKSLGTGNRVATVLFYMSDVA-QGGATVFTS 227 (312)
Q Consensus 149 ~~~~~i~~RI~~~tGl~~~~~E~lqv~rY~~Gg~y~~H~D~~~~~~~~~~~~~~~g~R~aT~L~YLnDv~-~GG~TvFp~ 227 (312)
+..-.+...+...+|.+....|..-+..|.+|..-.+|.|-..... ..-++++-+=.+..+ -||... -.
T Consensus 85 p~l~~~~~~~~~~~g~~~~~~ea~Lvn~Y~pGd~ig~HqD~~e~~~---------~~~v~slSLg~~~~F~~~~~~r-~~ 154 (194)
T COG3145 85 PPLLALFHDLFGAAGYPFEGPEAVLVNRYRPGASIGWHQDKDEEDD---------RPPVASLSLGAPCIFRLRGRRR-RG 154 (194)
T ss_pred CccHHHHHHHHHHhcCCCCChhheeEEeccCCCccccccccccccC---------CCceEEEecCCCeEEEeccccC-CC
Confidence 3344666777778899888889999999999999999999864321 112444443333333 133332 23
Q ss_pred CCeEEeccCccEEEEc
Q psy8177 228 LNLSLWPEKGTAAFWH 243 (312)
Q Consensus 228 ~~~~V~P~kGsal~f~ 243 (312)
...++.=..|++|+|-
T Consensus 155 ~~~~~~L~~Gdvvvm~ 170 (194)
T COG3145 155 PGLRLRLEHGDVVVMG 170 (194)
T ss_pred CceeEEecCCCEEEec
Confidence 4678888999999996
No 30
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=66.62 E-value=24 Score=32.83 Aligned_cols=98 Identities=17% Similarity=0.221 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhcCCCccc--------cccccccccCCCC------cccccccCCCCCCccccccCCCCCeEEEEEEecc
Q psy8177 150 VIERISRRVEHMTGLTTST--------AEELQVVNYGIGG------HYEPHYDFARPGEANAFKSLGTGNRVATVLFYMS 215 (312)
Q Consensus 150 ~~~~i~~RI~~~tGl~~~~--------~E~lqv~rY~~Gg------~y~~H~D~~~~~~~~~~~~~~~g~R~aT~L~YLn 215 (312)
+..+|.+-++..+|++.+. ...+++..|.+-. -..+|.|+. .+|+|+- +
T Consensus 88 l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HtD~g----------------~lTlL~q-d 150 (262)
T PLN03001 88 LAQKLLAFISESLGLPCSCIEDAVGDFYQNITVSYYPPCPQPELTLGLQSHSDFG----------------AITLLIQ-D 150 (262)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhcCcchhheeecCCCCCCcccccCCcCCcCCC----------------eeEEEEe-C
Confidence 4455555556667775321 1235677775421 133555542 4777755 3
Q ss_pred CCCCCceeeecCCC-eEEeccCccEEEEccCCC-----CCCCCCCCcccccccccceeE
Q psy8177 216 DVAQGGATVFTSLN-LSLWPEKGTAAFWHNLHS-----SGDGDYYTRHAACPVLTGSNS 268 (312)
Q Consensus 216 Dv~~GG~TvFp~~~-~~V~P~kGsal~f~n~~~-----~g~~d~~tlH~gcPV~~G~Kw 268 (312)
++ ||==+...-+ +.|.|..|+.|| |+-. ++..-..+.|.+.-.-...+|
T Consensus 151 ~v--~GLqV~~~g~Wi~V~p~p~a~vV--NiGD~l~~~tng~~~S~~HRVv~~~~~~R~ 205 (262)
T PLN03001 151 DV--EGLQLLKDAEWLMVPPISDAILI--IIADQTEIITNGNYKSAQHRAIANANKARL 205 (262)
T ss_pred CC--CceEEeeCCeEEECCCCCCcEEE--EccHHHHHHhCCccccccceEEcCCCCCEE
Confidence 43 6644443322 789999998888 4321 223345788998744344566
No 31
>COG4340 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=58.49 E-value=8.3 Score=34.31 Aligned_cols=39 Identities=21% Similarity=0.434 Sum_probs=26.4
Q ss_pred CCceeeecCCCeEEeccCccEEEEccCCCCCC----CCCCCccccccccc
Q psy8177 219 QGGATVFTSLNLSLWPEKGTAAFWHNLHSSGD----GDYYTRHAACPVLT 264 (312)
Q Consensus 219 ~GG~TvFp~~~~~V~P~kGsal~f~n~~~~g~----~d~~tlH~gcPV~~ 264 (312)
.||+|..+. .+|.+.+|.-+...|+ -|.+.+|.+||+.-
T Consensus 159 ~gGet~lY~-------~~~~~p~f~kvl~pGe~~~l~Dh~~~H~~tpi~p 201 (226)
T COG4340 159 DGGETDLYA-------PDGASPGFFKVLAPGEAVFLDDHRVLHGVTPIVP 201 (226)
T ss_pred cCceEEEEc-------cCCCCcceEEeccCCcEEEeccchhcccccceec
Confidence 699988653 3444455555555554 47899999999864
No 32
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=56.83 E-value=38 Score=29.46 Aligned_cols=80 Identities=19% Similarity=0.260 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhcCCCccccccccccccCCCCcccccccCCCCCCccccccCCCCCeEEEEE------EeccCCCCCce
Q psy8177 149 PVIERISRRVEHMTGLTTSTAEELQVVNYGIGGHYEPHYDFARPGEANAFKSLGTGNRVATVL------FYMSDVAQGGA 222 (312)
Q Consensus 149 ~~~~~i~~RI~~~tGl~~~~~E~lqv~rY~~Gg~y~~H~D~~~~~~~~~~~~~~~g~R~aT~L------~YLnDv~~GG~ 222 (312)
+.+..|.++++..+|+.....+..-|..|..|+.-.+|.|..... ...-++++- |-+ ||.
T Consensus 74 ~~L~~L~~~v~~~~g~~~~~~n~~LvN~Y~~Gd~mg~H~D~~e~~---------~~~pI~SvSLG~~r~F~~-----~~~ 139 (169)
T TIGR00568 74 QDLGDLCERVATAAGFPDFQPDACLVNRYAPGATLSLHQDRDEPD---------LRAPLLSVSLGLPAIFLI-----GGL 139 (169)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCEEEEEeecCCCcccccccccccc---------CCCCEEEEeCCCCEEEEe-----cCC
Confidence 678899999999998754455677788899999999999952211 112222221 111 232
Q ss_pred eeecCCCeEEeccCccEEEEc
Q psy8177 223 TVFTSLNLSLWPEKGTAAFWH 243 (312)
Q Consensus 223 TvFp~~~~~V~P~kGsal~f~ 243 (312)
+. -....++.-..|++|++.
T Consensus 140 ~~-~~~~~~l~L~sGsllvM~ 159 (169)
T TIGR00568 140 KR-NDPPKRLRLHSGDVVIMG 159 (169)
T ss_pred cC-CCceEEEEeCCCCEEEEC
Confidence 21 112367888999999986
No 33
>KOG0176|consensus
Probab=54.36 E-value=9.5 Score=34.17 Aligned_cols=30 Identities=43% Similarity=0.723 Sum_probs=23.5
Q ss_pred ccceEEeeEeeEEEEeece---eeeeecCCCCC
Q psy8177 283 RSGIICTLVGMVITIRGML---PVLYSLDPSGT 312 (312)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 312 (312)
+-.+.+.-.|..+.|-|.= |-||++|||||
T Consensus 129 ~~~~msRPFGValliAG~D~~gpqL~h~dPSGt 161 (241)
T KOG0176|consen 129 EEAIMSRPFGVALLIAGHDETGPQLYHLDPSGT 161 (241)
T ss_pred hhhhhcCCcceEEEEeeccCCCceEEEeCCCCc
Confidence 3355666678888888865 99999999997
No 34
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=54.22 E-value=80 Score=30.52 Aligned_cols=40 Identities=13% Similarity=0.072 Sum_probs=26.6
Q ss_pred CCccccCCceeeeh----ccCCcEEEEcCCCCHHHHHHHHHHhc
Q psy8177 75 VPYLRLMPLKEEEA----YLQPRIILYRDVMYDSEIDLIKKMAQ 114 (312)
Q Consensus 75 ~p~l~laPlk~E~l----s~~P~I~v~~d~Ls~~Ec~~Li~la~ 114 (312)
-|.+-|+++..+.| ...-+..+...-|+.+.++.+.+.++
T Consensus 39 IPvIDls~~~~~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~s~ 82 (341)
T PLN02984 39 IPVIDMECLDMEKLREACKDWGIFRLENHGIPLTLMSQLKEISE 82 (341)
T ss_pred CCeEeCcHHHHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHH
Confidence 56677766543433 23456666667779999998887765
No 35
>PF06822 DUF1235: Protein of unknown function (DUF1235); InterPro: IPR009641 This family contains a number of poxviral proteins, which include Vaccinia virus, A37, the function of which is unknown.
Probab=51.92 E-value=77 Score=29.72 Aligned_cols=97 Identities=11% Similarity=0.249 Sum_probs=70.1
Q ss_pred cHHHHHHHHHHHHhcCCCccccccccccccCCCCcccccccCCCCCCccccccCCCCCeEEEEEEeccCCCCCceeeecC
Q psy8177 148 HPVIERISRRVEHMTGLTTSTAEELQVVNYGIGGHYEPHYDFARPGEANAFKSLGTGNRVATVLFYMSDVAQGGATVFTS 227 (312)
Q Consensus 148 ~~~~~~i~~RI~~~tGl~~~~~E~lqv~rY~~Gg~y~~H~D~~~~~~~~~~~~~~~g~R~aT~L~YLnDv~~GG~TvFp~ 227 (312)
..++..|.+.+.+-. -..+.+++..|..|+-++.-. .....+.++|+=|.-+..||..++-.
T Consensus 32 ~~i~~EI~kh~~e~V----~~~~~i~i~~f~~~~~~~~~~--------------~~~~~~sr~lvCi~sakkGG~iii~~ 93 (266)
T PF06822_consen 32 KIILSEIEKHINEPV----YVNNLISIQVFDKGQCYKSRI--------------QDNSSLSRILVCIQSAKKGGCIIIRN 93 (266)
T ss_pred HHHHHHHHHhcCCeE----EecCcEEEEEEeCCCceeccc--------------cCCCcceeEEEEeeccccCCeEEEee
Confidence 456777777774432 334788899999888653211 12345788999999999999888754
Q ss_pred C----CeEEeccCccEEEEccCCCCCCCCCCCcccccccccceeEEee
Q psy8177 228 L----NLSLWPEKGTAAFWHNLHSSGDGDYYTRHAACPVLTGSNSLHS 271 (312)
Q Consensus 228 ~----~~~V~P~kGsal~f~n~~~~g~~d~~tlH~gcPV~~G~KwI~~ 271 (312)
. .-.+.|..|.||+=.+ ...-...+|+.|+-.+.+
T Consensus 94 ~~~~~kkii~~~~~~aVlLsp---------l~~y~Vs~V~~G~~i~i~ 132 (266)
T PF06822_consen 94 TISNDKKIITPNQNMAVLLSP---------LADYDVSNVTKGSMIIIV 132 (266)
T ss_pred cccCCceEEecCCCeEEEecc---------hhheEEEEecCCcEEEEE
Confidence 3 6789999999999765 456778899999877443
No 36
>PLN02485 oxidoreductase
Probab=51.32 E-value=48 Score=31.66 Aligned_cols=58 Identities=17% Similarity=0.002 Sum_probs=36.0
Q ss_pred EEEEEEeccCCCCCceeeecCCC--eEEeccCccEEEEccCCC-----CCCCCCCCcccccccccceeE
Q psy8177 207 VATVLFYMSDVAQGGATVFTSLN--LSLWPEKGTAAFWHNLHS-----SGDGDYYTRHAACPVLTGSNS 268 (312)
Q Consensus 207 ~aT~L~YLnDv~~GG~TvFp~~~--~~V~P~kGsal~f~n~~~-----~g~~d~~tlH~gcPV~~G~Kw 268 (312)
.+|+|+ .|...||-=++...+ +.|.|..|.+|| |+-. ++..-..+.|.+.+.-...+|
T Consensus 215 ~lTlL~--qd~~~~GLqV~~~~g~Wi~V~p~pg~~vV--NiGD~L~~~TnG~~~St~HRVv~~~~~~R~ 279 (329)
T PLN02485 215 LLTLVN--QDDDITALQVRNLSGEWIWAIPIPGTFVC--NIGDMLKIWSNGVYQSTLHRVINNSPKYRV 279 (329)
T ss_pred eEEEEe--ccCCCCeeeEEcCCCcEEECCCCCCcEEE--EhHHHHHHHHCCEeeCCCceecCCCCCCeE
Confidence 467763 444557766665434 899999999887 3311 223345789998754433455
No 37
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=49.33 E-value=86 Score=30.34 Aligned_cols=58 Identities=14% Similarity=-0.037 Sum_probs=35.4
Q ss_pred EEEEEEeccCCCCCceeeecCC-CeEEeccCccEEEEccCCC-----CCCCCCCCcccccccccceeE
Q psy8177 207 VATVLFYMSDVAQGGATVFTSL-NLSLWPEKGTAAFWHNLHS-----SGDGDYYTRHAACPVLTGSNS 268 (312)
Q Consensus 207 ~aT~L~YLnDv~~GG~TvFp~~-~~~V~P~kGsal~f~n~~~-----~g~~d~~tlH~gcPV~~G~Kw 268 (312)
.+|+| +.|...||==+...- =+.|.|..|.+|+ |+-. ++..-..++|.+-+...+.+|
T Consensus 230 ~lTlL--~qd~~v~GLQV~~~g~Wi~V~p~pg~lVV--NiGD~Le~~Tng~~kSt~HRVv~~~~~~R~ 293 (348)
T PLN00417 230 AFTLL--LPDKDVEGLQFLKDGKWYKAPIVPDTILI--NVGDQMEIMSNGIYKSPVHRVVTNREKERI 293 (348)
T ss_pred ceEEE--EecCCCCceeEeECCeEEECCCCCCcEEE--EcChHHHHHhCCeecccceEEecCCCCCEE
Confidence 36766 344344665455432 2789999999888 4321 233456889998655455676
No 38
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=48.63 E-value=78 Score=29.86 Aligned_cols=99 Identities=19% Similarity=0.212 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhcCC-Cccc----cccccccccCCCC----c--ccccccCCCCCCccccccCCCCCeEEEEEEeccCCC
Q psy8177 150 VIERISRRVEHMTGL-TTST----AEELQVVNYGIGG----H--YEPHYDFARPGEANAFKSLGTGNRVATVLFYMSDVA 218 (312)
Q Consensus 150 ~~~~i~~RI~~~tGl-~~~~----~E~lqv~rY~~Gg----~--y~~H~D~~~~~~~~~~~~~~~g~R~aT~L~YLnDv~ 218 (312)
+..+|.+-|+..+|+ +.+. ...+++++|.+-. . -.+|.|+. .+|+|+. |..
T Consensus 124 l~~~ll~~la~~Lgl~~~~~f~~~~~~lr~~~YP~~p~~~~~~g~~~HtD~g----------------~lTlL~q--d~~ 185 (300)
T PLN02365 124 LAMDLARKLAESLGLVEGDFFQGWPSQFRINKYNFTPETVGSSGVQIHTDSG----------------FLTILQD--DEN 185 (300)
T ss_pred HHHHHHHHHHHHcCCCChHHHhhcccceeeeecCCCCCccccccccCccCCC----------------ceEEEec--CCC
Confidence 334444445556777 4322 2356788884321 1 23455442 4777744 433
Q ss_pred CCceeeecC-CC--eEEeccCccEEEEccCCC-----CCCCCCCCcccccccccceeE
Q psy8177 219 QGGATVFTS-LN--LSLWPEKGTAAFWHNLHS-----SGDGDYYTRHAACPVLTGSNS 268 (312)
Q Consensus 219 ~GG~TvFp~-~~--~~V~P~kGsal~f~n~~~-----~g~~d~~tlH~gcPV~~G~Kw 268 (312)
.||==+... .+ +.|.|..|+.|| |+-. ++..-..++|.+...-..++|
T Consensus 186 ~~GLqV~~~~~g~Wi~V~p~pga~vV--NiGD~l~~~TNG~~~St~HRVv~~~~~~R~ 241 (300)
T PLN02365 186 VGGLEVMDPSSGEFVPVDPLPGTLLV--NLGDVATAWSNGRLCNVKHRVQCKEATMRI 241 (300)
T ss_pred cCceEEEECCCCeEEecCCCCCeEEE--EhhHHHHHHhCCceecccceeEcCCCCCEE
Confidence 566555543 33 889999999998 4321 223446788988643334566
No 39
>PLN02904 oxidoreductase
Probab=46.95 E-value=1e+02 Score=30.02 Aligned_cols=56 Identities=13% Similarity=0.014 Sum_probs=34.2
Q ss_pred EEEEEEeccCCCCCceeeecCCC--eEEeccCccEEEEccCCC-----CCCCCCCCcccccccccceeE
Q psy8177 207 VATVLFYMSDVAQGGATVFTSLN--LSLWPEKGTAAFWHNLHS-----SGDGDYYTRHAACPVLTGSNS 268 (312)
Q Consensus 207 ~aT~L~YLnDv~~GG~TvFp~~~--~~V~P~kGsal~f~n~~~-----~g~~d~~tlH~gcPV~~G~Kw 268 (312)
.+|+|+ .|+ ||==+...-| +.|.|..|+.|+ |+-. ++..-..++|.+-.-...++|
T Consensus 235 ~lTlL~--qd~--~GLQV~~~~g~Wi~V~p~pgalVV--NiGD~Le~~TNG~~kSt~HRVv~~~~~~R~ 297 (357)
T PLN02904 235 SLTILL--QSS--QGLQIMDCNKNWVCVPYIEGALIV--QLGDQVEVMSNGIYKSVVHRVTVNKDYKRL 297 (357)
T ss_pred ceEEEe--cCC--CeeeEEeCCCCEEECCCCCCeEEE--EccHHHHHHhCCeeeccCCcccCCCCCCEE
Confidence 478885 453 6655554333 889999999988 4321 223346788987433334555
No 40
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=46.63 E-value=37 Score=26.64 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=34.1
Q ss_pred EEEEeccCCCCCceeeecC-CCeEEeccCccEEEEccCCCCCCCCCCCcccccccccc
Q psy8177 209 TVLFYMSDVAQGGATVFTS-LNLSLWPEKGTAAFWHNLHSSGDGDYYTRHAACPVLTG 265 (312)
Q Consensus 209 T~L~YLnDv~~GG~TvFp~-~~~~V~P~kGsal~f~n~~~~g~~d~~tlH~gcPV~~G 265 (312)
+.+.-++|...|+...|-. ..+.|.-..|....|.| .-.|.++|+..|
T Consensus 4 ~~v~~~~~l~~g~~~~~~~~~~i~v~~~~g~~~A~~~---------~CpH~g~~L~~G 52 (106)
T PRK09965 4 IYACPVADLPEGEALRVDTSPVIALFNVGGEFYAIDD---------RCSHGNASLSEG 52 (106)
T ss_pred EEeeeHHHcCCCCeEEEeCCCeEEEEEECCEEEEEeC---------cCCCCCCCCCce
Confidence 3456688888888877753 34566666787777776 677999998544
No 41
>PLN02216 protein SRG1
Probab=46.34 E-value=88 Score=30.36 Aligned_cols=58 Identities=12% Similarity=0.076 Sum_probs=34.4
Q ss_pred EEEEEEeccCCCCCceeeecCCC-eEEeccCccEEEEccCCC-----CCCCCCCCcccccccccceeE
Q psy8177 207 VATVLFYMSDVAQGGATVFTSLN-LSLWPEKGTAAFWHNLHS-----SGDGDYYTRHAACPVLTGSNS 268 (312)
Q Consensus 207 ~aT~L~YLnDv~~GG~TvFp~~~-~~V~P~kGsal~f~n~~~-----~g~~d~~tlH~gcPV~~G~Kw 268 (312)
.+|+|+--++ .||==+...-+ +.|.|..|+.|+ |+-. ++..-..++|.+-......++
T Consensus 237 ~lTlL~q~~~--v~GLQV~~~g~Wi~V~p~pgalvV--NiGD~L~~~TNG~~kS~~HRVv~~~~~~R~ 300 (357)
T PLN02216 237 GLTILLQVNE--VEGLQIKKDGKWVSVKPLPNALVV--NVGDILEIITNGTYRSIEHRGVVNSEKERL 300 (357)
T ss_pred eEEEEEecCC--CCceeEEECCEEEECCCCCCeEEE--EcchhhHhhcCCeeeccCceeecCCCCCEE
Confidence 4677744343 46655554322 789999999888 4321 223345788998433344565
No 42
>COG5285 Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=46.27 E-value=40 Score=32.06 Aligned_cols=67 Identities=21% Similarity=0.189 Sum_probs=45.9
Q ss_pred ccccccCCCCCCccccccCCCCCeEEEEEEeccCCC-CCceeee-cCC-------------------CeEEeccCccEEE
Q psy8177 183 YEPHYDFARPGEANAFKSLGTGNRVATVLFYMSDVA-QGGATVF-TSL-------------------NLSLWPEKGTAAF 241 (312)
Q Consensus 183 y~~H~D~~~~~~~~~~~~~~~g~R~aT~L~YLnDv~-~GG~TvF-p~~-------------------~~~V~P~kGsal~ 241 (312)
=.+|.|+..... ...-+..+.+-|.|.. +-|+|.+ |.- .+-|.=.||+|||
T Consensus 133 t~~HqD~~~~~~--------~~~~lV~~wiAl~d~~~dnGat~vvPgSH~~~~~~~r~d~~~y~~~~~~pv~lekGDall 204 (299)
T COG5285 133 TRWHQDYPLVSP--------GYPALVNAWIALCDFTEDNGATLVVPGSHKWDVIPERPDHETYLERNAVPVELEKGDALL 204 (299)
T ss_pred cccccccccccC--------CccceEEEEEeccccccccCceEEEecccccccCCCCCCccchhhhcceeeeecCCCEEE
Confidence 458999543321 1344566788888864 5677765 431 3567778999999
Q ss_pred EccCCCCCCCCCCCcccccccccce
Q psy8177 242 WHNLHSSGDGDYYTRHAACPVLTGS 266 (312)
Q Consensus 242 f~n~~~~g~~d~~tlH~gcPV~~G~ 266 (312)
|. +.++|++---..|.
T Consensus 205 F~---------~~L~HaA~aNrT~~ 220 (299)
T COG5285 205 FN---------GSLWHAAGANRTSA 220 (299)
T ss_pred Ec---------chhhhhhhcCCCCc
Confidence 96 48899998888873
No 43
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=44.54 E-value=65 Score=30.79 Aligned_cols=77 Identities=18% Similarity=0.171 Sum_probs=44.6
Q ss_pred cccccccCCCC------cccccccCCCCCCccccccCCCCCeEEEEEEeccCCCCCceeeecCC-CeEEeccCccEEEEc
Q psy8177 171 ELQVVNYGIGG------HYEPHYDFARPGEANAFKSLGTGNRVATVLFYMSDVAQGGATVFTSL-NLSLWPEKGTAAFWH 243 (312)
Q Consensus 171 ~lqv~rY~~Gg------~y~~H~D~~~~~~~~~~~~~~~g~R~aT~L~YLnDv~~GG~TvFp~~-~~~V~P~kGsal~f~ 243 (312)
.+++.+|.+-. -..+|.|+. .+|+| +.|...||==+...- =+.|.|..|++||
T Consensus 159 ~lRl~~YPp~~~~~~~~G~~~HTD~g----------------~lTlL--~qd~~v~GLQV~~~g~Wi~V~p~pg~lvV-- 218 (321)
T PLN02299 159 GTKVSNYPPCPKPDLVKGLRAHTDAG----------------GIILL--FQDDKVSGLQLLKDGEWVDVPPMRHSIVV-- 218 (321)
T ss_pred eeeeEecCCCCCcccccCccCccCCC----------------eEEEE--EecCCCCCcCcccCCeEEECCCCCCeEEE--
Confidence 36788887521 134666653 36776 343334554444322 2788999999887
Q ss_pred cCC------CCCCCCCCCcccccccccceeE
Q psy8177 244 NLH------SSGDGDYYTRHAACPVLTGSNS 268 (312)
Q Consensus 244 n~~------~~g~~d~~tlH~gcPV~~G~Kw 268 (312)
|+- .|| .-..+.|.+...-.+.+|
T Consensus 219 NiGD~l~~~Tng-~~kS~~HRVv~~~~~~R~ 248 (321)
T PLN02299 219 NLGDQLEVITNG-KYKSVMHRVVAQTDGNRM 248 (321)
T ss_pred EeCHHHHHHhCC-ceecccceeecCCCCCEE
Confidence 332 233 345788988644445566
No 44
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=42.28 E-value=1.1e+02 Score=29.78 Aligned_cols=57 Identities=21% Similarity=0.161 Sum_probs=34.2
Q ss_pred EEEEEEeccCCCCCceeeecCC---CeEEeccCccEEEEccCCC-----CCCCCCCCcccccccccceeE
Q psy8177 207 VATVLFYMSDVAQGGATVFTSL---NLSLWPEKGTAAFWHNLHS-----SGDGDYYTRHAACPVLTGSNS 268 (312)
Q Consensus 207 ~aT~L~YLnDv~~GG~TvFp~~---~~~V~P~kGsal~f~n~~~-----~g~~d~~tlH~gcPV~~G~Kw 268 (312)
.+|+|+- ++ .||==|.... =+.|.|..|+.|| |+-. ++..-..++|.+-..-.+++|
T Consensus 222 ~lTlL~Q-d~--v~GLQV~~~~~~~Wi~Vpp~pgalVV--NiGD~L~~~TNG~~kSt~HRVv~~~~~~R~ 286 (358)
T PLN02515 222 TITLLLQ-DQ--VGGLQATRDGGKTWITVQPVEGAFVV--NLGDHGHYLSNGRFKNADHQAVVNSNCSRL 286 (358)
T ss_pred eEEEEec-CC--CCceEEEECCCCeEEECCCCCCeEEE--EccHHHHHHhCCeeeeecceEECCCCCCEE
Confidence 4677743 33 3665554433 2789999999888 4321 223346789987544445666
No 45
>PF10014 2OG-Fe_Oxy_2: 2OG-Fe dioxygenase; InterPro: IPR018724 Members of this family of hypothetical bacterial proteins have no known function. Some are described as putative biofilm formation or putative agglutination proteins. ; PDB: 3PL0_B.
Probab=41.61 E-value=28 Score=30.91 Aligned_cols=52 Identities=17% Similarity=0.161 Sum_probs=28.9
Q ss_pred CCeEEEEEEeccCCCCCceeeecCC-----CeEEeccCccEEEEccCCCCCCCCCCCccccccccc
Q psy8177 204 GNRVATVLFYMSDVAQGGATVFTSL-----NLSLWPEKGTAAFWHNLHSSGDGDYYTRHAACPVLT 264 (312)
Q Consensus 204 g~R~aT~L~YLnDv~~GG~TvFp~~-----~~~V~P~kGsal~f~n~~~~g~~d~~tlH~gcPV~~ 264 (312)
-.-+++.|+--+++ .||+|..... .....-..|..+++- |.+.+|.+.||..
T Consensus 123 ~d~v~~~li~r~Ni-~GG~s~i~~~~~~~~~~~~l~~p~d~l~~~--------D~~~~H~vtpI~~ 179 (195)
T PF10014_consen 123 VDFVFIHLINRHNI-EGGESQIYDNDKEILFFFTLLEPGDTLLVD--------DRRVWHYVTPIRP 179 (195)
T ss_dssp SSEEEEEEEEEESE-EE--EEEEETTSSEEEEE---STTEEEEEE--------TTTEEEEE--EEE
T ss_pred CCEEEEEEEcCCCc-cCceEEEEeCCCCcceEEEecCCCCEEEEe--------CCcceECCCceec
Confidence 45678888888778 6887764221 112223445555553 6799999999975
No 46
>PLN02276 gibberellin 20-oxidase
Probab=40.63 E-value=1.5e+02 Score=28.73 Aligned_cols=58 Identities=24% Similarity=0.201 Sum_probs=34.7
Q ss_pred EEEEEEeccCCCCCceeeecCCC-eEEeccCccEEEEcc----CCCCCCCCCCCcccccccccceeE
Q psy8177 207 VATVLFYMSDVAQGGATVFTSLN-LSLWPEKGTAAFWHN----LHSSGDGDYYTRHAACPVLTGSNS 268 (312)
Q Consensus 207 ~aT~L~YLnDv~~GG~TvFp~~~-~~V~P~kGsal~f~n----~~~~g~~d~~tlH~gcPV~~G~Kw 268 (312)
.+|+|+- | ..||==|+..-+ +.|.|..|++||--- .+.|| .-..++|.+-.--..++|
T Consensus 233 ~lTlL~Q--d-~v~GLQV~~~g~Wi~V~p~pgalVVNiGD~L~~~TNG-~~kSt~HRVv~~~~~~R~ 295 (361)
T PLN02276 233 SLTILHQ--D-QVGGLQVFVDNKWRSVRPRPGALVVNIGDTFMALSNG-RYKSCLHRAVVNSERERR 295 (361)
T ss_pred eeEEEEe--c-CCCceEEEECCEEEEcCCCCCeEEEEcHHHHHHHhCC-ccccccceeecCCCCCEE
Confidence 4777753 4 456766664321 899999999998321 11233 345789997533334565
No 47
>PLN02997 flavonol synthase
Probab=39.61 E-value=1.2e+02 Score=29.02 Aligned_cols=57 Identities=12% Similarity=-0.013 Sum_probs=33.7
Q ss_pred EEEEEEeccCCCCCceeeecCC-CeEEeccCccEEEEccCCC-----CCCCCCCCcccccccccceeE
Q psy8177 207 VATVLFYMSDVAQGGATVFTSL-NLSLWPEKGTAAFWHNLHS-----SGDGDYYTRHAACPVLTGSNS 268 (312)
Q Consensus 207 ~aT~L~YLnDv~~GG~TvFp~~-~~~V~P~kGsal~f~n~~~-----~g~~d~~tlH~gcPV~~G~Kw 268 (312)
.+|+|+- ++ .||==+...- =+.|.|..|++|| |+-. ++..-..++|.+..--...+|
T Consensus 210 ~lTlL~Q-d~--v~GLQV~~~g~Wi~V~p~pgalvV--NiGD~Le~~TNG~~kSt~HRVv~~~~~~R~ 272 (325)
T PLN02997 210 AIALLIP-NE--VPGLQAFKDEQWLDLNYINSAVVV--IIGDQLMRMTNGRFKNVLHRAKTDKERLRI 272 (325)
T ss_pred ceEEEec-CC--CCCEEEeECCcEEECCCCCCeEEE--EechHHHHHhCCccccccceeeCCCCCCEE
Confidence 4777743 22 4665555432 2789999998888 3321 223345788998643334455
No 48
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=38.98 E-value=93 Score=23.58 Aligned_cols=46 Identities=9% Similarity=0.194 Sum_probs=31.4
Q ss_pred EEeccCCCCCceeeecC--CCeEEeccCccEEEEccCCCCCCCCCCCcccccccccc
Q psy8177 211 LFYMSDVAQGGATVFTS--LNLSLWPEKGTAAFWHNLHSSGDGDYYTRHAACPVLTG 265 (312)
Q Consensus 211 L~YLnDv~~GG~TvFp~--~~~~V~P~kGsal~f~n~~~~g~~d~~tlH~gcPV~~G 265 (312)
+.-++|...|+...|.. ..+.|.-..|....|.| .-.|.++|+..|
T Consensus 4 v~~~~~l~~g~~~~~~~~g~~~~v~r~~~~~~a~~~---------~CpH~g~~L~~g 51 (98)
T cd03528 4 VCAVDELPEGEPKRVDVGGRPIAVYRVDGEFYATDD---------LCTHGDASLSEG 51 (98)
T ss_pred EEEhhhcCCCCEEEEEECCeEEEEEEECCEEEEECC---------cCCCCCCCCCCC
Confidence 44466776777666643 24555556777777777 678999998766
No 49
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=37.59 E-value=1.1e+02 Score=29.47 Aligned_cols=82 Identities=17% Similarity=0.114 Sum_probs=53.4
Q ss_pred ccccccccccCC------CCcccccccCCCCCCccccccCCCCCeEEEEEEeccCCCCCceeeecCCC--eEEeccCccE
Q psy8177 168 TAEELQVVNYGI------GGHYEPHYDFARPGEANAFKSLGTGNRVATVLFYMSDVAQGGATVFTSLN--LSLWPEKGTA 239 (312)
Q Consensus 168 ~~E~lqv~rY~~------Gg~y~~H~D~~~~~~~~~~~~~~~g~R~aT~L~YLnDv~~GG~TvFp~~~--~~V~P~kGsa 239 (312)
..+.++++||.. ++.-..|.|+. .+|+ |--...||--|++..+ +.|.|..|+.
T Consensus 172 ~~~~~RLlrYP~~~~~~~~~~~GaHtD~G----------------~lTL---l~Qd~~~GLqv~~~~g~Wl~v~P~pgtl 232 (322)
T COG3491 172 PNSVLRLLRYPSRPAREGADGVGAHTDYG----------------LLTL---LFQDDVGGLEVRPPNGGWLDVPPIPGTL 232 (322)
T ss_pred chheEEEEecCCCcccccccccccccCCC----------------eEEE---EEecccCCeEEecCCCCeeECCCCCCeE
Confidence 567899999984 22335666663 2344 3445668888887644 8999999999
Q ss_pred EEEcc-CC--CCCCCCCCCcccccccccceeE
Q psy8177 240 AFWHN-LH--SSGDGDYYTRHAACPVLTGSNS 268 (312)
Q Consensus 240 l~f~n-~~--~~g~~d~~tlH~gcPV~~G~Kw 268 (312)
|+..- +. -.|..-..|.|.+|--..=.+|
T Consensus 233 vVNiGdmLe~~Tng~lrST~HRV~~~~~~~R~ 264 (322)
T COG3491 233 VVNIGDMLERWTNGRLRSTVHRVRNPPGVDRY 264 (322)
T ss_pred EEeHHHHHHHHhCCeeccccceeecCCCccce
Confidence 99642 10 1234456899998876643455
No 50
>PHA02577 2 DNA end protector protein; Provisional
Probab=35.12 E-value=11 Score=32.88 Aligned_cols=82 Identities=21% Similarity=0.280 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhcCCCccccccccccccCCCCcccccccCCCCCCccccccCCCCCeEEEEEEeccCCCCCceeeecCCCe
Q psy8177 151 IERISRRVEHMTGLTTSTAEELQVVNYGIGGHYEPHYDFARPGEANAFKSLGTGNRVATVLFYMSDVAQGGATVFTSLNL 230 (312)
Q Consensus 151 ~~~i~~RI~~~tGl~~~~~E~lqv~rY~~Gg~y~~H~D~~~~~~~~~~~~~~~g~R~aT~L~YLnDv~~GG~TvFp~~~~ 230 (312)
.+...++|..-. -..|++++.+|--|.--||.-..+.-. .-+| +-++|||+.....|.|.|..+++
T Consensus 21 ~~WF~~~ikk~~-------r~h~v~kp~~Grly~F~YdAk~KdtLp------ywDr-fPLI~flg~~~~~g~~l~~GLNL 86 (181)
T PHA02577 21 LEWFTETIKKDI-------RGHQVVKPQPGRLYTFEYDAKHKDTLP------YWDR-FPLIIFLGSGQSKAHTLMYGLNL 86 (181)
T ss_pred HHHHHHHHHhhc-------cccccccCcCceEEEEEecccccCccc------cccc-CcEEEEEecCCCCCcceEeeeec
Confidence 344555555422 456899999998887777765543221 1233 45889999999889999999998
Q ss_pred EEeccCccEEEEccCC
Q psy8177 231 SLWPEKGTAAFWHNLH 246 (312)
Q Consensus 231 ~V~P~kGsal~f~n~~ 246 (312)
---|.|-+.+|+.-|.
T Consensus 87 HYlpPKaR~~fle~Ll 102 (181)
T PHA02577 87 HYLPPKARQLFLEELL 102 (181)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 8888888888887543
No 51
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=34.69 E-value=1.7e+02 Score=28.38 Aligned_cols=48 Identities=27% Similarity=0.337 Sum_probs=31.8
Q ss_pred EEEEEEeccCCCCCceeeecCCC--eEEeccCccEEEEccC------CCCCCCCCCCccccc
Q psy8177 207 VATVLFYMSDVAQGGATVFTSLN--LSLWPEKGTAAFWHNL------HSSGDGDYYTRHAAC 260 (312)
Q Consensus 207 ~aT~L~YLnDv~~GG~TvFp~~~--~~V~P~kGsal~f~n~------~~~g~~d~~tlH~gc 260 (312)
.+|+|+- ++ .||==++..-+ +.|.|..|.+|+ |+ +.|| .-..++|.+-
T Consensus 237 ~lTiL~Q-d~--v~GLQV~~~~~~Wi~V~p~pgalVV--NiGD~lq~~SNg-~~kS~~HRVv 292 (358)
T PLN02254 237 LLTILYQ-SN--TSGLQVFREGVGWVTVPPVPGSLVV--NVGDLLHILSNG-RFPSVLHRAV 292 (358)
T ss_pred cEEEEec-CC--CCCceEECCCCEEEEcccCCCCEEE--EhHHHHHHHhCC-eeccccceee
Confidence 4788864 33 36766665543 899999999998 33 2233 3457889884
No 52
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=34.01 E-value=2.7e+02 Score=27.04 Aligned_cols=57 Identities=14% Similarity=0.099 Sum_probs=34.4
Q ss_pred EEEEEEeccC-CCCCceeeecCCC--eEEeccCccEEEEccCCC-----CCCCCCCCcccccccccceeE
Q psy8177 207 VATVLFYMSD-VAQGGATVFTSLN--LSLWPEKGTAAFWHNLHS-----SGDGDYYTRHAACPVLTGSNS 268 (312)
Q Consensus 207 ~aT~L~YLnD-v~~GG~TvFp~~~--~~V~P~kGsal~f~n~~~-----~g~~d~~tlH~gcPV~~G~Kw 268 (312)
.+|+|+ .| +..||==++.. + +.|.|..|..|+- +-. ++..-..+.|.+-..-..++|
T Consensus 238 ~lTlL~--qd~~~v~GLQV~~~-g~Wi~V~p~pgalVVN--iGD~L~~~SNG~~kS~~HRVv~~~~~~R~ 302 (361)
T PLN02758 238 ALTVLQ--QGKGSCVGLQILKD-NTWVPVHPVPNALVIN--IGDTLEVLTNGKYKSVEHRAVTNKEKDRL 302 (361)
T ss_pred eeEEEE--eCCCCCCCeeeeeC-CEEEeCCCCCCeEEEE--ccchhhhhcCCeeecccceeecCCCCCEE
Confidence 477774 34 35567555543 3 8899999998883 321 223446788988643334455
No 53
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=33.63 E-value=2e+02 Score=27.61 Aligned_cols=57 Identities=19% Similarity=0.163 Sum_probs=34.9
Q ss_pred EEEEEEeccCCCCCceeeec-CCC--eEEeccCccEEEEccCCC-----CCCCCCCCcccccccccceeE
Q psy8177 207 VATVLFYMSDVAQGGATVFT-SLN--LSLWPEKGTAAFWHNLHS-----SGDGDYYTRHAACPVLTGSNS 268 (312)
Q Consensus 207 ~aT~L~YLnDv~~GG~TvFp-~~~--~~V~P~kGsal~f~n~~~-----~g~~d~~tlH~gcPV~~G~Kw 268 (312)
.+|+|+- | ..||==++. .-+ +.|.|..|+.|| |+-. ++..-..++|.+.......+|
T Consensus 220 ~lTlL~q--d-~v~GLQV~~~~~g~Wi~V~p~pg~~vV--NiGD~L~~~Tng~~~St~HRVv~~~~~~R~ 284 (345)
T PLN02750 220 ALTVLAQ--D-DVGGLQISRRSDGEWIPVKPIPDAFII--NIGNCMQVWTNDLYWSAEHRVVVNSQKERF 284 (345)
T ss_pred eEEEEec--C-CCCceEEeecCCCeEEEccCCCCeEEE--EhHHHHHHHhCCeeecccceeccCCCCCEE
Confidence 4677633 3 347766653 233 889999999888 4321 223346789999744445566
No 54
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=32.52 E-value=2.3e+02 Score=27.41 Aligned_cols=57 Identities=26% Similarity=0.225 Sum_probs=34.2
Q ss_pred EEEEEEeccCCCCCceeeecCCC-eEEeccCccEEEEccCCC-----CCCCCCCCcccccccccceeE
Q psy8177 207 VATVLFYMSDVAQGGATVFTSLN-LSLWPEKGTAAFWHNLHS-----SGDGDYYTRHAACPVLTGSNS 268 (312)
Q Consensus 207 ~aT~L~YLnDv~~GG~TvFp~~~-~~V~P~kGsal~f~n~~~-----~g~~d~~tlH~gcPV~~G~Kw 268 (312)
.+|+|+- | ..||==++..-+ +.|.|..|..|+ |+-. ++..-..++|.+-..-.+++|
T Consensus 224 ~lTlL~Q--d-~v~GLQV~~~g~Wi~V~p~pgalvV--NiGD~L~~~TNG~~kSt~HRVv~~~~~~R~ 286 (348)
T PLN02912 224 LITVLLQ--D-EVSGLQVFKDGKWIAVNPIPNTFIV--NLGDQMQVISNDKYKSVLHRAVVNTDKERI 286 (348)
T ss_pred ceEEEEE--C-CCCceEEEECCcEEECCCcCCeEEE--EcCHHHHHHhCCEEEcccccccCCCCCCEE
Confidence 4677743 3 346766664322 789999999888 4321 223345788988533345566
No 55
>KOG0143|consensus
Probab=30.53 E-value=1.8e+02 Score=27.83 Aligned_cols=56 Identities=25% Similarity=0.237 Sum_probs=38.7
Q ss_pred EEEEEeccCCCCCceeeec-C-CCeEEeccCccEEEEccC------CCCCCCCCCCcccccccccceeE
Q psy8177 208 ATVLFYMSDVAQGGATVFT-S-LNLSLWPEKGTAAFWHNL------HSSGDGDYYTRHAACPVLTGSNS 268 (312)
Q Consensus 208 aT~L~YLnDv~~GG~TvFp-~-~~~~V~P~kGsal~f~n~------~~~g~~d~~tlH~gcPV~~G~Kw 268 (312)
+|+| |.|...||-=+|. . -=+.|.|.+|+.|+ |+ +.|| .-..++|.+..-..+.++
T Consensus 204 lTiL--lqd~~V~GLQv~~~dg~Wi~V~P~p~a~vV--NiGD~l~~lSNG-~ykSv~HRV~~n~~~~R~ 267 (322)
T KOG0143|consen 204 LTIL--LQDDDVGGLQVFTKDGKWIDVPPIPGAFVV--NIGDMLQILSNG-RYKSVLHRVVVNGEKERI 267 (322)
T ss_pred eEEE--EccCCcCceEEEecCCeEEECCCCCCCEEE--EcccHHhHhhCC-cccceEEEEEeCCCCceE
Confidence 6666 5665778988886 2 23899999987777 44 2245 345788988777666665
No 56
>PTZ00273 oxidase reductase; Provisional
Probab=29.74 E-value=1.6e+02 Score=27.91 Aligned_cols=57 Identities=21% Similarity=0.238 Sum_probs=34.2
Q ss_pred EEEEEEeccCCCCCceeeecCCC--eEEeccCccEEEEcc----CCCCCCCCCCCcccccccccceeE
Q psy8177 207 VATVLFYMSDVAQGGATVFTSLN--LSLWPEKGTAAFWHN----LHSSGDGDYYTRHAACPVLTGSNS 268 (312)
Q Consensus 207 ~aT~L~YLnDv~~GG~TvFp~~~--~~V~P~kGsal~f~n----~~~~g~~d~~tlH~gcPV~~G~Kw 268 (312)
.+|+|+ .| ..||-=++..-+ +.|.|..|++||--- .+.+| .-..++|.+... ..++|
T Consensus 205 ~lTlL~--qd-~~~GLqV~~~~g~Wi~V~p~pg~lvVNvGD~l~~~TnG-~~kSt~HRVv~~-~~~R~ 267 (320)
T PTZ00273 205 IITLLY--QD-SVGGLQVRNLSGEWMDVPPLEGSFVVNIGDMMEMWSNG-RYRSTPHRVVNT-GVERY 267 (320)
T ss_pred eEEEEe--cC-CCCceEEECCCCCEEeCCCCCCeEEEEHHHHHHHHHCC-eeeCCCccccCC-CCCeE
Confidence 477774 34 347765665334 899999999887311 11233 345789998632 23555
No 57
>COG3870 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.36 E-value=21 Score=28.48 Aligned_cols=15 Identities=53% Similarity=0.789 Sum_probs=12.6
Q ss_pred EEeccCCCCCceeee
Q psy8177 211 LFYMSDVAQGGATVF 225 (312)
Q Consensus 211 L~YLnDv~~GG~TvF 225 (312)
.=|+=||+.||+|+|
T Consensus 85 vpypveV~vggatvf 99 (109)
T COG3870 85 VPYPVEVEVGGATVF 99 (109)
T ss_pred ccccEEEecCceEEE
Confidence 346778999999999
No 58
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=28.56 E-value=2.4e+02 Score=26.98 Aligned_cols=58 Identities=19% Similarity=0.164 Sum_probs=34.3
Q ss_pred EEEEEEeccCCCCCceeeecCC-CeEEeccCccEEEEccCCC-----CCCCCCCCcccccccccceeE
Q psy8177 207 VATVLFYMSDVAQGGATVFTSL-NLSLWPEKGTAAFWHNLHS-----SGDGDYYTRHAACPVLTGSNS 268 (312)
Q Consensus 207 ~aT~L~YLnDv~~GG~TvFp~~-~~~V~P~kGsal~f~n~~~-----~g~~d~~tlH~gcPV~~G~Kw 268 (312)
.+|+|+- |...||==++..- =+.|.|..|++|+ |+-. ++..-..++|.+-..-...+|
T Consensus 217 ~lTlL~q--d~~v~GLQV~~~g~Wi~V~p~pg~lVV--NiGD~L~~~TNG~~kSt~HRVv~~~~~~R~ 280 (337)
T PLN02639 217 ALTILLQ--DQQVAGLQVLKDGKWVAVNPHPGAFVI--NIGDQLQALSNGRYKSVWHRAVVNTDKERM 280 (337)
T ss_pred ceEEEEe--cCCcCceEeecCCeEEeccCCCCeEEE--echhHHHHHhCCeeeccCcccccCCCCCEE
Confidence 4677743 4334665555432 2889999999998 4421 223345788988432234566
No 59
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=28.06 E-value=2.2e+02 Score=27.70 Aligned_cols=58 Identities=16% Similarity=0.020 Sum_probs=32.7
Q ss_pred EEEEEEeccCCCCCceeeecCC-CeEEeccCccEEEEccCCC-----CCCCCCCCcccccccccceeE
Q psy8177 207 VATVLFYMSDVAQGGATVFTSL-NLSLWPEKGTAAFWHNLHS-----SGDGDYYTRHAACPVLTGSNS 268 (312)
Q Consensus 207 ~aT~L~YLnDv~~GG~TvFp~~-~~~V~P~kGsal~f~n~~~-----~g~~d~~tlH~gcPV~~G~Kw 268 (312)
.+|+|+- |...||==+...- =+.|.|..|++|+ |+-. ++..-..++|.+-.-....+|
T Consensus 240 ~lTlL~q--~~~v~GLQV~~~g~W~~V~p~pgalVV--NiGD~l~~~Tng~~kSt~HRVv~~~~~~R~ 303 (362)
T PLN02393 240 GMTILLP--DDNVAGLQVRRDDAWITVKPVPDAFIV--NIGDQIQVLSNAIYKSVEHRVIVNSAKERV 303 (362)
T ss_pred eEEEEee--CCCCCcceeeECCEEEECCCCCCeEEE--EcchhhHhhcCCeeeccceecccCCCCCEE
Confidence 3566643 3334665555331 1889999999888 4321 223345788988432233455
No 60
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=27.89 E-value=3.4e+02 Score=26.10 Aligned_cols=58 Identities=10% Similarity=0.116 Sum_probs=35.0
Q ss_pred EEEEEEeccCCCCCceeeecCCC--eEEeccCccEEEEc----cCCCCCCCCCCCcccccccccceeE
Q psy8177 207 VATVLFYMSDVAQGGATVFTSLN--LSLWPEKGTAAFWH----NLHSSGDGDYYTRHAACPVLTGSNS 268 (312)
Q Consensus 207 ~aT~L~YLnDv~~GG~TvFp~~~--~~V~P~kGsal~f~----n~~~~g~~d~~tlH~gcPV~~G~Kw 268 (312)
.+|+|+- | ..||-=+...-+ +.|.|..|+.|+-- ..+.|| .-..+.|.+...-...+|
T Consensus 207 ~lTlL~Q--d-~v~GLQV~~~~g~Wi~Vpp~pga~VVNiGD~l~~wTNg-~~kSt~HRVv~~~~~~R~ 270 (335)
T PLN02156 207 LISLLRS--N-DTAGLQICVKDGTWVDVPPDHSSFFVLVGDTLQVMTNG-RFKSVKHRVVTNTKRSRI 270 (335)
T ss_pred ceEEEEe--C-CCCceEEEeCCCCEEEccCCCCcEEEEhHHHHHHHhCC-eeeccceeeecCCCCCEE
Confidence 4677744 3 246655553323 88999999998831 112233 346789988755445566
No 61
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=27.49 E-value=1.9e+02 Score=27.39 Aligned_cols=77 Identities=21% Similarity=0.107 Sum_probs=41.0
Q ss_pred ccccccCCCC----c--ccccccCCCCCCccccccCCCCCeEEEEEEeccCCCCCceeeecCC-CeEEeccCc-cEEEEc
Q psy8177 172 LQVVNYGIGG----H--YEPHYDFARPGEANAFKSLGTGNRVATVLFYMSDVAQGGATVFTSL-NLSLWPEKG-TAAFWH 243 (312)
Q Consensus 172 lqv~rY~~Gg----~--y~~H~D~~~~~~~~~~~~~~~g~R~aT~L~YLnDv~~GG~TvFp~~-~~~V~P~kG-sal~f~ 243 (312)
+++++|.+-. . ..+|.|+. .+|+|+- |...||==+...- =+.|.|..| +.|+
T Consensus 155 lrl~~YP~~~~~~~~~G~~~HtD~g----------------~lTlL~q--~~~v~GLqV~~~g~Wi~V~p~p~~~lvV-- 214 (303)
T PLN02403 155 TKVAKYPECPRPELVRGLREHTDAG----------------GIILLLQ--DDQVPGLEFLKDGKWVPIPPSKNNTIFV-- 214 (303)
T ss_pred eeeEcCCCCCCcccccCccCccCCC----------------eEEEEEe--cCCCCceEeccCCeEEECCCCCCCEEEE--
Confidence 6788886521 1 33566653 3566533 2223453333221 277888885 5555
Q ss_pred cCCC-----CCCCCCCCcccccccccceeE
Q psy8177 244 NLHS-----SGDGDYYTRHAACPVLTGSNS 268 (312)
Q Consensus 244 n~~~-----~g~~d~~tlH~gcPV~~G~Kw 268 (312)
|+-. ++..-..+.|.+-....+.+|
T Consensus 215 NvGD~L~~~Tng~~~S~~HRVv~~~~~~R~ 244 (303)
T PLN02403 215 NTGDQLEVLSNGRYKSTLHRVMADKNGSRL 244 (303)
T ss_pred EehHHHHHHhCCeeecccceeecCCCCCEE
Confidence 3211 223345788998755556676
No 62
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=27.09 E-value=1.3e+02 Score=22.89 Aligned_cols=45 Identities=16% Similarity=0.255 Sum_probs=27.7
Q ss_pred eccCCCCCceeeecCCC--eEEe-ccCccEEEEccCCCCCCCCCCCcccccccccce
Q psy8177 213 YMSDVAQGGATVFTSLN--LSLW-PEKGTAAFWHNLHSSGDGDYYTRHAACPVLTGS 266 (312)
Q Consensus 213 YLnDv~~GG~TvFp~~~--~~V~-P~kGsal~f~n~~~~g~~d~~tlH~gcPV~~G~ 266 (312)
-++|...|+...|.-.+ +.|. ...|....|.| .-.|.++|+..|.
T Consensus 6 ~~~~l~~~~~~~~~~~g~~i~l~r~~~g~~~A~~~---------~CpH~g~~L~~g~ 53 (98)
T cd03530 6 ALEDIPPRGARKVQTGGGEIAVFRTADDEVFALEN---------RCPHKGGPLSEGI 53 (98)
T ss_pred EHHHCCCCCcEEEEECCEEEEEEEeCCCCEEEEcC---------cCCCCCCCccCCE
Confidence 35666666666554332 3333 33477777766 6789999988763
No 63
>PRK09553 tauD taurine dioxygenase; Reviewed
Probab=27.05 E-value=39 Score=31.42 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=23.4
Q ss_pred cccccCCCCCCccccccCCCCCeEEEEEEeccCCCCCceeeecC
Q psy8177 184 EPHYDFARPGEANAFKSLGTGNRVATVLFYMSDVAQGGATVFTS 227 (312)
Q Consensus 184 ~~H~D~~~~~~~~~~~~~~~g~R~aT~L~YLnDv~~GG~TvFp~ 227 (312)
.||.|......+. .+++|.-+.-...||+|.|=+
T Consensus 95 ~wHtD~sy~~~pp----------~~~~L~~~~~p~~GG~T~fad 128 (277)
T PRK09553 95 NWHTDVTFIETPP----------LGAILAAKQLPSTGGDTLWAS 128 (277)
T ss_pred CCeecccCeeCCC----------ceeEEEEEecCCCCCccHhhh
Confidence 4999987654221 256666666677899999954
No 64
>PF02668 TauD: Taurine catabolism dioxygenase TauD, TfdA family; InterPro: IPR003819 This family consists of TauD/TfdA taurine catabolism dioxygenases. The Escherichia coli tauD gene is required for the utilization of taurine (2-aminoethanesulphonic acid) as a sulphur source and is expressed only under conditions of sulphate starvation. TauD is an alpha-ketoglutarate-dependent dioxygenase catalyzing the oxygenolytic release of sulphite from taurine []. The 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase from Burkholderia sp. (strain RASC) also belongs to this family []. TfdA from Ralstonia eutropha (Alcaligenes eutrophus) is a 2,4-D monooxygenase [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3SWT_B 3R1J_A 1GVG_A 1DRT_A 1DS1_A 1DS0_A 1DRY_A 3V15_A 3PVJ_D 3V17_A ....
Probab=26.45 E-value=62 Score=28.79 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=23.2
Q ss_pred CeEEeccCccEEEEccCCCCCCCCCCCccccccc--ccceeEE
Q psy8177 229 NLSLWPEKGTAAFWHNLHSSGDGDYYTRHAACPV--LTGSNSL 269 (312)
Q Consensus 229 ~~~V~P~kGsal~f~n~~~~g~~d~~tlH~gcPV--~~G~KwI 269 (312)
.+.+.-++|++|||.|. +++|+..+. -.|.+|+
T Consensus 220 ~~~~~~~~GDlli~dN~--------~~lHgR~~~~~~~~~R~L 254 (258)
T PF02668_consen 220 TYRHRWQPGDLLIWDNH--------RVLHGRTAFDDPDGDRHL 254 (258)
T ss_dssp EEEEE--TTEEEEEETT--------TEEEEE--E-STTSSEEE
T ss_pred cccccCCCceEEEEcCC--------eeEecCCCCCCCCCCEEE
Confidence 47788899999999984 899999988 4566663
No 65
>cd00250 CAS_like Clavaminic acid synthetase (CAS) -like; CAS is a trifunctional Fe(II)/ 2-oxoglutarate (2OG) oxygenase carrying out three reactions in the biosynthesis of clavulanic acid, an inhibitor of class A serine beta-lactamases. In general, Fe(II)-2OG oxygenases catalyze a hydroxylation reaction, which leads to the incorporation of an oxygen atom from dioxygen into a hydroxyl group and conversion of 2OG to succinate and CO2
Probab=26.14 E-value=63 Score=29.40 Aligned_cols=34 Identities=21% Similarity=0.207 Sum_probs=26.7
Q ss_pred CCeEEeccCccEEEEccCCCCCCCCCCCccccccccc---ceeEE
Q psy8177 228 LNLSLWPEKGTAAFWHNLHSSGDGDYYTRHAACPVLT---GSNSL 269 (312)
Q Consensus 228 ~~~~V~P~kGsal~f~n~~~~g~~d~~tlH~gcPV~~---G~KwI 269 (312)
..+.++-++|++|+|-|. +++|+..+-.. +.+|+
T Consensus 218 ~~~~~~l~~Gdivi~DN~--------r~lHgR~~f~~~~~~~R~L 254 (262)
T cd00250 218 NQLTVKLEPGDLLIFDNR--------RVLHGRTAFSPRYGGDRWL 254 (262)
T ss_pred hEEEEEcCCCCEEEEech--------hhhcCCCCCCCCCCCceEE
Confidence 357888999999999984 89999887654 35663
No 66
>PLN02704 flavonol synthase
Probab=25.18 E-value=2.5e+02 Score=26.93 Aligned_cols=57 Identities=12% Similarity=0.041 Sum_probs=32.4
Q ss_pred EEEEEEeccCCCCCceeeecCCC-eEEeccCccEEEEccCCC-----CCCCCCCCcccccccccceeE
Q psy8177 207 VATVLFYMSDVAQGGATVFTSLN-LSLWPEKGTAAFWHNLHS-----SGDGDYYTRHAACPVLTGSNS 268 (312)
Q Consensus 207 ~aT~L~YLnDv~~GG~TvFp~~~-~~V~P~kGsal~f~n~~~-----~g~~d~~tlH~gcPV~~G~Kw 268 (312)
.+|+|+- |. .||==|...-+ +.|.|..|++|| |+-. ++..-..++|.+...-..++|
T Consensus 226 ~lTlL~q--d~-v~GLQV~~~g~Wi~V~p~pg~lvV--NvGD~L~~~TNg~~kSt~HRVv~~~~~~R~ 288 (335)
T PLN02704 226 AITILVP--NE-VQGLQVFRDDHWFDVKYIPNALVI--HIGDQIEILSNGKYKSVLHRTTVNKEKTRM 288 (335)
T ss_pred ceEEEec--CC-CCceeEeECCEEEeCCCCCCeEEE--EechHHHHHhCCeeecccceeecCCCCCeE
Confidence 3666644 32 45544443322 788999998887 3321 233446788988543334455
No 67
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=24.14 E-value=69 Score=29.20 Aligned_cols=12 Identities=67% Similarity=1.013 Sum_probs=10.1
Q ss_pred eeeeeecCCCCC
Q psy8177 301 LPVLYSLDPSGT 312 (312)
Q Consensus 301 ~~~~~~~~~~~~ 312 (312)
=|.||++||+|+
T Consensus 140 ~p~Ly~~Dp~G~ 151 (236)
T COG0638 140 GPRLYSTDPSGS 151 (236)
T ss_pred CCeEEEECCCCc
Confidence 478999999985
No 68
>KOG0183|consensus
Probab=23.88 E-value=59 Score=29.59 Aligned_cols=26 Identities=35% Similarity=0.618 Sum_probs=19.0
Q ss_pred cceEEeeEeeEEEEeeceeeeeecCCCCC
Q psy8177 284 SGIICTLVGMVITIRGMLPVLYSLDPSGT 312 (312)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (312)
+|.-|-.+|. --+| .|.||..||||+
T Consensus 128 FGvs~Li~Gf--D~~g-~p~lyqtePsG~ 153 (249)
T KOG0183|consen 128 FGVSTLIGGF--DPDG-TPRLYQTEPSGI 153 (249)
T ss_pred ccceEEEEee--CCCC-CeeeEeeCCCcc
Confidence 3555555553 4577 899999999995
No 69
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=23.78 E-value=72 Score=28.94 Aligned_cols=11 Identities=27% Similarity=0.516 Sum_probs=10.3
Q ss_pred eeeeecCCCCC
Q psy8177 302 PVLYSLDPSGT 312 (312)
Q Consensus 302 ~~~~~~~~~~~ 312 (312)
|-||++||||+
T Consensus 134 p~Ly~vDpsG~ 144 (228)
T TIGR03691 134 DQLYRITFDGS 144 (228)
T ss_pred CEEEEECCCCC
Confidence 89999999996
No 70
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=23.17 E-value=1.8e+02 Score=22.52 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=29.3
Q ss_pred eccCCCCCceeeecCCC---eEEeccCccEEEEccCCCCCCCCCCCcccccccccce
Q psy8177 213 YMSDVAQGGATVFTSLN---LSLWPEKGTAAFWHNLHSSGDGDYYTRHAACPVLTGS 266 (312)
Q Consensus 213 YLnDv~~GG~TvFp~~~---~~V~P~kGsal~f~n~~~~g~~d~~tlH~gcPV~~G~ 266 (312)
-++|+..|+...|...+ +.++...|....|.| .-.|.++|+..|.
T Consensus 6 ~~~~l~~g~~~~~~~~~~~~~~~~~~~g~~~A~~n---------~CpH~g~~L~~g~ 53 (108)
T cd03474 6 SLDDVWEGEMELVDVDGEEVLLVAPEGGEFRAFQG---------ICPHQEIPLAEGG 53 (108)
T ss_pred ehhccCCCceEEEEECCeEEEEEEccCCeEEEEcC---------cCCCCCCCcccCc
Confidence 35666666666654322 345566777777776 6779999987664
No 71
>PLN02947 oxidoreductase
Probab=23.07 E-value=3.2e+02 Score=26.73 Aligned_cols=56 Identities=18% Similarity=0.167 Sum_probs=33.2
Q ss_pred EEEEEEeccCCCCCceeeecCCC-eEEeccCccEEEEccCC------CCCCCCCCCcccccccccceeE
Q psy8177 207 VATVLFYMSDVAQGGATVFTSLN-LSLWPEKGTAAFWHNLH------SSGDGDYYTRHAACPVLTGSNS 268 (312)
Q Consensus 207 ~aT~L~YLnDv~~GG~TvFp~~~-~~V~P~kGsal~f~n~~------~~g~~d~~tlH~gcPV~~G~Kw 268 (312)
.+|+|+- ++ .||==++..-+ +.|.|..|++|| |+- .|| .-..++|.+-..-...++
T Consensus 252 ~lTlL~Q-d~--v~GLQV~~~g~Wi~V~p~pga~VV--NvGD~Lq~~SNG-~~kS~~HRVv~~~~~~R~ 314 (374)
T PLN02947 252 FLTLLLQ-DE--VEGLQIMHAGRWVTVEPIPGSFVV--NVGDHLEIFSNG-RYKSVLHRVRVNSTKPRI 314 (374)
T ss_pred ceEEEEe-cC--CCCeeEeECCEEEeCCCCCCeEEE--EeCceeeeeeCC-EEeccccccccCCCCCEE
Confidence 5788855 33 46655655322 789999998887 332 233 335778887433234455
No 72
>PHA02985 hypothetical protein; Provisional
Probab=22.60 E-value=4.6e+02 Score=24.65 Aligned_cols=94 Identities=9% Similarity=0.185 Sum_probs=66.3
Q ss_pred cHHHHHHHHHHHHhcCCCccccccccccccCCCCcccccccCCCCCCccccccCCCCCeEEEEEEeccCCCCCceeeecC
Q psy8177 148 HPVIERISRRVEHMTGLTTSTAEELQVVNYGIGGHYEPHYDFARPGEANAFKSLGTGNRVATVLFYMSDVAQGGATVFTS 227 (312)
Q Consensus 148 ~~~~~~i~~RI~~~tGl~~~~~E~lqv~rY~~Gg~y~~H~D~~~~~~~~~~~~~~~g~R~aT~L~YLnDv~~GG~TvFp~ 227 (312)
..++..|++++.+- .-..+.+++..|+.|+.|.- ....++..+|+=+.-+..||..+--+
T Consensus 39 ~~I~~EI~~~i~E~----V~~~n~i~i~~f~~~~~~~~----------------~~~~~~SkilICiqsAkkGG~iIi~~ 98 (271)
T PHA02985 39 KIILDEIEQYIDET----VLVKNLISIEVFNKKKKYYQ----------------NIPSRLSKIIICIQSAKKGGCIIIIN 98 (271)
T ss_pred hHHHHHHHHhcCCe----EEecceeEEEEEcCCcceEe----------------eCCCCceeEEEEEeecccCCEEEEec
Confidence 45677777777432 12346778887777744311 02456788999999999999888622
Q ss_pred ----CCeEEeccCccEEEEccCCCCCCCCCCCcccccccccceeEEe
Q psy8177 228 ----LNLSLWPEKGTAAFWHNLHSSGDGDYYTRHAACPVLTGSNSLH 270 (312)
Q Consensus 228 ----~~~~V~P~kGsal~f~n~~~~g~~d~~tlH~gcPV~~G~KwI~ 270 (312)
-.-.+.|..|.|++-.+ .+.-...+|..|+--+.
T Consensus 99 ~~~~~K~ii~~~~n~aVlLSP---------Ls~Y~Vs~V~kGsli~i 136 (271)
T PHA02985 99 NITNNKKIITLNINHIIILSP---------LSKYTVSKVSKGSLIII 136 (271)
T ss_pred ccccCceEEecCCCeEEEecc---------hhhceEEEecCCcEEEE
Confidence 35789999999999764 56677889999987633
No 73
>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins.; PDB: 3M05_A.
Probab=22.40 E-value=21 Score=28.90 Aligned_cols=12 Identities=58% Similarity=0.825 Sum_probs=7.6
Q ss_pred ccCCCCCceeee
Q psy8177 214 MSDVAQGGATVF 225 (312)
Q Consensus 214 LnDv~~GG~TvF 225 (312)
.-+|+.||||+|
T Consensus 88 pveV~vGGATVF 99 (109)
T PF06153_consen 88 PVEVEVGGATVF 99 (109)
T ss_dssp -EEEEE--EEEE
T ss_pred ceEEEEcccEEE
Confidence 446888999999
No 74
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=21.96 E-value=3.5e+02 Score=26.15 Aligned_cols=57 Identities=9% Similarity=-0.071 Sum_probs=33.2
Q ss_pred EEEEEEeccCCCCCceeeecCC-CeEEeccCccEEEEccCCC-----CCCCCCCCcccccccccceeE
Q psy8177 207 VATVLFYMSDVAQGGATVFTSL-NLSLWPEKGTAAFWHNLHS-----SGDGDYYTRHAACPVLTGSNS 268 (312)
Q Consensus 207 ~aT~L~YLnDv~~GG~TvFp~~-~~~V~P~kGsal~f~n~~~-----~g~~d~~tlH~gcPV~~G~Kw 268 (312)
.+|+|+- | ..||-=+...- =+.|.|..|++|| |+-. ++..-..++|.+-.--.+.+|
T Consensus 238 ~lTlL~q--d-~v~GLQV~~~g~Wi~V~p~pg~lvV--NiGD~L~~~TNG~~kSt~HRVv~~~~~~R~ 300 (360)
T PLN03178 238 ALTFILH--N-MVPGLQVLYEGKWVTAKCVPDSIVV--HIGDTLEILSNGRYKSILHRGLVNKEKVRI 300 (360)
T ss_pred ceEEEee--C-CCCceeEeECCEEEEcCCCCCeEEE--EccHHHHHHhCCccccccceeecCCCCCeE
Confidence 4777743 3 34665554322 1889999999887 4422 233446789997422234466
No 75
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=21.86 E-value=85 Score=28.76 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=16.0
Q ss_pred ceEEeeEeeEEEEeeceeeeeecCCCCC
Q psy8177 285 GIICTLVGMVITIRGMLPVLYSLDPSGT 312 (312)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (312)
+.....||-+--=.| |.||++||+|+
T Consensus 109 ~gvslIigG~D~~~G--p~LY~idpsG~ 134 (236)
T cd03765 109 FSASFILGGQIKGEE--PRLFLIYPQGN 134 (236)
T ss_pred eEEEEEEEeEECCCC--CEEEEECCCCC
Confidence 344444444432123 99999999995
No 76
>KOG4459|consensus
Probab=21.64 E-value=28 Score=34.99 Aligned_cols=56 Identities=25% Similarity=0.347 Sum_probs=44.2
Q ss_pred CCeEEEEEEeccCCCCCceeeecC--C---CeEEeccCccEEEEccCCCCCCCCCCCcccccccccce
Q psy8177 204 GNRVATVLFYMSDVAQGGATVFTS--L---NLSLWPEKGTAAFWHNLHSSGDGDYYTRHAACPVLTGS 266 (312)
Q Consensus 204 g~R~aT~L~YLnDv~~GG~TvFp~--~---~~~V~P~kGsal~f~n~~~~g~~d~~tlH~gcPV~~G~ 266 (312)
+-+....+.|+||.++||+..|.. + ...++|+-|+..-|.. |..+ -|...+|+.|.
T Consensus 364 ~~~~~~a~~~~~dd~~~~el~~t~~d~~t~~a~~k~~~~re~~~~~----g~e~---~~~~~~~~kg~ 424 (471)
T KOG4459|consen 364 TELDYFALLYLNDDFEGGELLFTEPDAKTYTAISKPECGRECAFSS----GAEN---PHGVKAVTKGL 424 (471)
T ss_pred HHHHhhccHhhcCccccccceecCCcccchhhccccccccchhhhc----cccC---ccchhhhhhhh
Confidence 556788899999999999999943 2 5788999999998875 3323 38888888885
No 77
>KOG4176|consensus
Probab=21.54 E-value=4.1e+02 Score=25.71 Aligned_cols=157 Identities=17% Similarity=0.199 Sum_probs=83.1
Q ss_pred CCceeeehccCCc-EEEEcCCCCHHHHHHHHHHhcC-cC-------ccceeeeCCCCceeeeeeeeecc-cc--cCCCCc
Q psy8177 81 MPLKEEEAYLQPR-IILYRDVMYDSEIDLIKKMAQP-RL-------RRATVQNYKTGELEIANYRISKS-AW--LREPEH 148 (312)
Q Consensus 81 aPlk~E~ls~~P~-I~v~~d~Ls~~Ec~~Li~la~~-~l-------~~s~v~~~~~g~~~~~~~R~s~~-aw--l~~~~~ 148 (312)
...++...-..|- +.++.+++++.+-+.++..-.. .+ ++..+.. |. .-.+++.+. -| ++ .-.
T Consensus 116 ~~~~l~~~~~~~~e~~~~~d~V~el~e~~l~~~~~~e~~~~~~~gk~R~~iq~---G~--~f~y~~~~~d~~~~~~-piP 189 (323)
T KOG4176|consen 116 EGLKLRDEVFIPGELSLIVDFVTELEEKGLIGALVDETFTYQESGKHREVIQL---GY--PFDYRTNNVDESKPVD-PIP 189 (323)
T ss_pred hhheeeccccChhhceehhhhhhhhHHhhhhcccccccceeeccccceeeeec---Cc--eeccCCCcccccCccC-CCc
Confidence 3344444444544 7888888888877666555332 11 1111111 00 112222111 11 11 123
Q ss_pred HHHHHHHHHHHHhcCCCccccccccccccCCCCcccccccCCCCCCccccccCCCCCeEEEEEEeccCCCC--Cceeee-
Q psy8177 149 PVIERISRRVEHMTGLTTSTAEELQVVNYGIGGHYEPHYDFARPGEANAFKSLGTGNRVATVLFYMSDVAQ--GGATVF- 225 (312)
Q Consensus 149 ~~~~~i~~RI~~~tGl~~~~~E~lqv~rY~~Gg~y~~H~D~~~~~~~~~~~~~~~g~R~aT~L~YLnDv~~--GG~TvF- 225 (312)
++++.|.+|+-..--++. ..+...|..|.+|+.-.||+|... .++.+.|+ .+|+|+.. |=...+
T Consensus 190 s~~~~ii~rlv~~~~ip~-~pd~~~iN~Ye~G~~i~ph~~~~~-----------F~~Pi~sl-S~lSe~~m~Fg~~~~~~ 256 (323)
T KOG4176|consen 190 SLFKSIIDRLVSWRVIPE-RPDQCTINFYEPGDGIPPHIDHSA-----------FLDPISSL-SFLSECTMEFGHGLLSD 256 (323)
T ss_pred hHHHHHHHHhhhhccCCC-CCCeeEEEeeCCCCCCCCCCChHH-----------hcCceEEE-EeecceeEEeccccccc
Confidence 566777777765544553 456788889999999999996532 14555554 24665421 111110
Q ss_pred ----cCCCeEEeccCccEEEEccCCCCCCCCCCCcccccc
Q psy8177 226 ----TSLNLSLWPEKGTAAFWHNLHSSGDGDYYTRHAACP 261 (312)
Q Consensus 226 ----p~~~~~V~P~kGsal~f~n~~~~g~~d~~tlH~gcP 261 (312)
+..-+++.-..|++++-.+- .-....|++||
T Consensus 257 ~~~~~~g~~s~p~~~g~~lvi~~~-----~ad~~~~~~~~ 291 (323)
T KOG4176|consen 257 NIGNFRGSLSLPLRYGSVLVIRGR-----SADVAPHCIRP 291 (323)
T ss_pred CccccccccccccccCeEEEeCCC-----cccccccccCC
Confidence 11136677788888887653 22345688888
No 78
>PF14033 DUF4246: Protein of unknown function (DUF4246)
Probab=21.42 E-value=1.8e+02 Score=29.78 Aligned_cols=42 Identities=19% Similarity=0.123 Sum_probs=25.7
Q ss_pred CCccccCCceeee--hccCCcEEEEcCCCCHH-------HHHHHHHHhcCc
Q psy8177 75 VPYLRLMPLKEEE--AYLQPRIILYRDVMYDS-------EIDLIKKMAQPR 116 (312)
Q Consensus 75 ~p~l~laPlk~E~--ls~~P~I~v~~d~Ls~~-------Ec~~Li~la~~~ 116 (312)
|..+..-|--++. -.....|.=|=|-|.+. -++.|++.+-|.
T Consensus 191 S~kfQWLP~eV~f~~~~g~vkItSYINNLHP~kh~~LY~iIEkii~~aIPl 241 (501)
T PF14033_consen 191 STKFQWLPCEVEFSQDDGSVKITSYINNLHPVKHKELYPIIEKIISKAIPL 241 (501)
T ss_pred CCCccEecceEEEEcCCCceEEEeecCCCCchhHHHHHHHHHHHHHHHHHH
Confidence 3445666777777 34456666677777666 355566666553
Done!