RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8177
(312 letters)
>gnl|CDD|214780 smart00702, P4Hc, Prolyl 4-hydroxylase alpha subunit homologues.
Mammalian enzymes catalyse hydroxylation of collagen,
for example. Prokaryotic enzymes might catalyse
hydroxylation of antibiotic peptides. These are
2-oxoglutarate-dependent dioxygenases, requiring
2-oxoglutarate and dioxygen as cosubstrates and ferrous
iron as a cofactor.
Length = 165
Score = 142 bits (359), Expect = 7e-42
Identities = 56/173 (32%), Positives = 77/173 (44%), Gaps = 25/173 (14%)
Query: 102 YDSEIDLIKKMAQPRLRRATVQNYKTGELEIANYRISKSAWLR-EPEHPVIERISRRVEH 160
+E + + A+P R V E + YR S WL VIERI +R+
Sbjct: 1 SPAECQKLLEEAEPLGWRGEVTRGIGNPNETSQYRQSNGTWLELLERDLVIERIRQRLAD 60
Query: 161 MTGL---TTSTAEELQVVNYGIGGHYEPHYDFARPGEANAFKSLGTGNRVATVLFYMSDV 217
GL +AE+ QV YG GGHY PH D G+R+AT + Y++DV
Sbjct: 61 FLGLLAGLPLSAEDAQVARYGPGGHYGPHVDNFL-----------YGDRIATFILYLNDV 109
Query: 218 AQGGATVFTSLNL----SLWPEKGTAAFWHNLHSSGDGDYYTRHAACPVLTGS 266
+GG VF L L ++ P+KG F+ + H + H CPV GS
Sbjct: 110 EEGGELVFPGLRLMVVATVKPKKGDLLFFPSGHGR------SLHGVCPVTRGS 156
>gnl|CDD|177683 PLN00052, PLN00052, prolyl 4-hydroxylase; Provisional.
Length = 310
Score = 107 bits (269), Expect = 3e-27
Identities = 62/193 (32%), Positives = 100/193 (51%), Gaps = 22/193 (11%)
Query: 91 QPRIILYRDVMYDSEIDLIKKMAQPRLRRATVQNYKTGELEIANYRISKSAWLREPEHPV 150
QPRI +Y+ + D+E D + K+A+ +++R+ V + K+G+ ++ R S +L + + PV
Sbjct: 53 QPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLDKRQDPV 112
Query: 151 IERISRRVEHMTGLTTSTAEELQVVNYGIGGHYEPHYDFARPGEANAFKSLGTGNRVATV 210
+ RI R+ T L AE +Q++ Y G YEPH+D+ + G+R ATV
Sbjct: 113 VSRIEERIAAWTFLPEENAENIQILRYEHGQKYEPHFDYFH----DKINQALGGHRYATV 168
Query: 211 LFYMSDVAQGGATVFTSLN------------------LSLWPEKGTAAFWHNLHSSGDGD 252
L Y+S V +GG TVF + L++ P KG A + +LH G D
Sbjct: 169 LMYLSTVDKGGETVFPNAEGWENQPKDDTFSECAHKGLAVKPVKGDAVLFFSLHIDGVPD 228
Query: 253 YYTRHAACPVLTG 265
+ H +CPV+ G
Sbjct: 229 PLSLHGSCPVIEG 241
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily. This
family contains members of the 2-oxoglutarate (2OG) and
Fe(II)-dependent oxygenase superfamily. This family
includes the C-terminal of prolyl 4-hydroxylase alpha
subunit. The holoenzyme has the activity EC:1.14.11.2
catalyzing the reaction: Procollagen L-proline +
2-oxoglutarate + O2 <=> procollagen trans-
4-hydroxy-L-proline + succinate + CO2. The full enzyme
consists of a alpha2 beta2 complex with the alpha
subunit contributing most of the parts of the active
site. The family also includes lysyl hydrolases,
isopenicillin synthases and AlkB.
Length = 96
Score = 37.8 bits (88), Expect = 7e-04
Identities = 21/106 (19%), Positives = 26/106 (24%), Gaps = 27/106 (25%)
Query: 168 TAEELQVVNYG--IGGHYEPHYDFARPGEANAFKSLGTGNRVATVLFYMSDVAQGGATVF 225
T E L V Y +G PH D + + T+L GG F
Sbjct: 1 TPEGLLVNYYPPDLGLGLGPHTD----------------DSIITILLQD----GGGGLQF 40
Query: 226 TSLNLSLWPEKGTAAF-----WHNLHSSGDGDYYTRHAACPVLTGS 266
+ G A L S H P G
Sbjct: 41 LKDGGWIDVPPGPGALVVNFGDLLLVLSNGRYKSVLHRVLPNTGGE 86
>gnl|CDD|222280 pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. This
family contains members of the 2-oxoglutarate (2OG) and
Fe(II)-dependent oxygenase superfamily.
Length = 93
Score = 32.4 bits (74), Expect = 0.058
Identities = 20/102 (19%), Positives = 30/102 (29%), Gaps = 28/102 (27%)
Query: 172 LQVVNYGIGGHYEPHYDFARPGEANAFKSLGTGNRVATVLFYMSD---VAQGGATVF--- 225
+ Y GG PH D G R T+L Y++D +GG
Sbjct: 1 AGLSRYRPGGFLGPHTDN------------SKGERRVTLLLYLNDDWWPEEGGELELYPS 48
Query: 226 --TSLNLSLWPEKGTAAFWHNLHSSGDGDYYTRHAACPVLTG 265
+ + P+ G + + H PV G
Sbjct: 49 DDGGVVRVIAPKPGRLVLF-------RSG-NSLHGVTPVGAG 82
>gnl|CDD|149007 pfam07710, P53_tetramer, P53 tetramerisation motif.
Length = 41
Score = 26.4 bits (59), Expect = 2.4
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 39 TLEVTEREKYEMLCR 53
TL+V RE+YEML +
Sbjct: 11 TLQVRGRERYEMLKK 25
>gnl|CDD|129918 TIGR00838, argH, argininosuccinate lyase. This model describes
argininosuccinate lyase, but may include examples of
avian delta crystallins, in which argininosuccinate
lyase activity may or may not be present and the
biological role is to provide the optically clear
cellular protein of the eye lens [Amino acid
biosynthesis, Glutamate family].
Length = 455
Score = 29.2 bits (66), Expect = 3.1
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 111 KMAQPRLRRATVQNYKTGELEIANYRISKSAWLREPEHPVIERISRRVEHMTGLTTSTAE 170
+ + R+ A + E+A+Y + K RE H V E ++ +E GL T E
Sbjct: 348 TVNKERMEEAASAGFSNAT-ELADYLVRKGVPFREAHHIVGELVATAIERGKGLEELTLE 406
Query: 171 ELQ 173
ELQ
Sbjct: 407 ELQ 409
>gnl|CDD|203609 pfam07308, DUF1456, Protein of unknown function (DUF1456). This
family consists of several hypothetical bacterial
proteins of around 150 residues in length. The function
of this family is unknown.
Length = 68
Score = 26.6 bits (60), Expect = 3.3
Identities = 8/23 (34%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
Query: 130 LEIANYRISK---SAWLREPEHP 149
+A + +SK SA LR+ +H
Sbjct: 23 FALAGFEVSKSELSALLRKEDHK 45
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 29.3 bits (65), Expect = 3.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 132 IANYRISKSAWLREPEHPVIERISRRVE 159
+A Y +SK P HP+I+ + RRV
Sbjct: 596 MAQYMMSKKTMELNPRHPIIKELRRRVG 623
>gnl|CDD|218890 pfam06089, Asparaginase_II, L-asparaginase II. This family
consists of several bacterial L-asparaginase II
proteins. L-asparaginase (EC:3.5.1.1) catalyzes the
hydrolysis of L-asparagine to L-aspartate and ammonium.
Rhizobium etli possesses two asparaginases: asparaginase
I, which is thermostable and constitutive, and
asparaginase II, which is thermolabile, induced by
asparagine and repressed by the carbon source.
Length = 325
Score = 28.3 bits (64), Expect = 5.8
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 145 EPEHPVIERISRRVEHMTGLTTS 167
+P+HP+ + I VE +TG ++
Sbjct: 152 DPDHPLQQAIRETVEELTGEPSA 174
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 28.1 bits (63), Expect = 7.9
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 8/47 (17%)
Query: 168 TAEEL--QVVNYGIGGHY------EPHYDFARPGEANAFKSLGTGNR 206
TA+E+ + YG G + Y R G NA ++L G +
Sbjct: 458 TADEINKLLKAYGFGNFELEKEAEDKGYRIVREGGENAARTLSEGEK 504
>gnl|CDD|216135 pfam00817, IMS, impB/mucB/samB family. These proteins are involved
in UV protection.
Length = 148
Score = 27.2 bits (61), Expect = 8.1
Identities = 29/131 (22%), Positives = 52/131 (39%), Gaps = 20/131 (15%)
Query: 49 EMLCRGDLTVPPAIVAQLKCRYVHRNVPYL-------RLMPLKEEEAYLQPRIILYRDVM 101
E L +L P V R V Y MPL E + L P +I+ V
Sbjct: 11 ERLRDPELRGKPVAVGGGNARGVVIAASYEARKYGVKSGMPLFEAKK-LCPDLIV---VP 66
Query: 102 YDSEIDLIKKMAQPRLRRATVQNYKTGELEIANY-----RISKSAWLREPEHPVIERISR 156
D +L ++ ++ R+ ++ + ++E+ + ++ L E + +R+ R
Sbjct: 67 PD--FELYRRASR-RIAEI-LRRFSPPKVEVYSIDEAFLDLTGLERLFGGEEALAKRLRR 122
Query: 157 RVEHMTGLTTS 167
+ TGLT S
Sbjct: 123 AIAEETGLTCS 133
>gnl|CDD|177376 PHA02541, 23, major capsid protein; Provisional.
Length = 518
Score = 27.9 bits (62), Expect = 8.7
Identities = 11/43 (25%), Positives = 15/43 (34%)
Query: 183 YEPHYDFARPGEANAFKSLGTGNRVATVLFYMSDVAQGGATVF 225
YEP F+ G A AF +L +A + G
Sbjct: 146 YEPDAMFSGQGAAGAFAALAASTAIAVGDIVTHFFQETGTAYL 188
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.411
Gapped
Lambda K H
0.267 0.0691 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,238,039
Number of extensions: 1555495
Number of successful extensions: 1186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1178
Number of HSP's successfully gapped: 20
Length of query: 312
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 215
Effective length of database: 6,635,264
Effective search space: 1426581760
Effective search space used: 1426581760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.6 bits)