RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8177
         (312 letters)



>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit,
          P4HA1 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 95

 Score = 25.9 bits (56), Expect = 2.7
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 1  MIFPTHQRAQGNKLYYQEALNK 22
           + P HQRA GN  Y++  + K
Sbjct: 74 ELDPEHQRANGNLKYFEYIMAK 95


>d2ghvc1 d.318.1.1 (C:320-502) Spike protein S1 {SARS coronavirus
           [TaxId: 227859]}
          Length = 183

 Score = 25.3 bits (55), Expect = 7.5
 Identities = 4/33 (12%), Positives = 9/33 (27%)

Query: 109 IKKMAQPRLRRATVQNYKTGELEIANYRISKSA 141
                        +   +TG +   NY++    
Sbjct: 65  ADSFVVKGDDVRQIAPGQTGVIADYNYKLPDDF 97


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0576    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,193,265
Number of extensions: 55617
Number of successful extensions: 112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 4
Length of query: 312
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 227
Effective length of database: 1,240,546
Effective search space: 281603942
Effective search space used: 281603942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.5 bits)