BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8179
(84 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DQV|A Chain A, Crystal Structure Of Reductase (R) Domain Of
Non-Ribosomal Peptide Synthetase From Mycobacterium
Tuberculosis
Length = 478
Score = 34.3 bits (77), Expect = 0.016, Method: Composition-based stats.
Identities = 18/32 (56%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Query: 43 PSPIQEFYKDQTVFITGATGFLGSLLVEKLLR 74
P P E +TV +TGATGFLG LV +LLR
Sbjct: 67 PGPSPEL---RTVLLTGATGFLGRYLVLELLR 95
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis
Vinifera At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis
Vinifera At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 30.4 bits (67), Expect = 0.25, Method: Composition-based stats.
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 51 KDQTVFITGATGFLGSLLVEKLL 73
+ +TV +TGA+GF+GS LV +LL
Sbjct: 4 QSETVCVTGASGFIGSWLVMRLL 26
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting
4,6-dehydratase In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting
4,6-dehydratase In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting
4,6-Dehydratase In Complex With Nadp And Udp-Gal
Length = 344
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 47 QEFYKDQTVFITGATGFLGSLLVEKLL 73
Q +QT+ ITG TG G V K+L
Sbjct: 16 QNMLDNQTILITGGTGSFGKCFVRKVL 42
>pdb|2VRB|A Chain A, Crystal Structure Of The Citrobacter Sp.
Triphenylmethane Reductase Complexed With Nadp(H)
Length = 287
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 54 TVFITGATGFLGSLLVEKLLRCCP 77
++ +TGATG LG L+++ LL+ P
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKKVP 25
>pdb|2JL1|A Chain A, Structural Insight Into Bioremediation Of
Triphenylmethane Dyes By Citrobacter Sp.
Triphenylmethane Reductase
Length = 287
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 54 TVFITGATGFLGSLLVEKLLRCCP 77
++ +TGATG LG L+++ LL+ P
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKKVP 25
>pdb|4F6C|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6C|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 427
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 56 FITGATGFLGSLLVEKL 72
+TGATGFLG+ L+E L
Sbjct: 73 LLTGATGFLGAYLIEAL 89
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From
Salmonella Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From
Salmonella Typhi
Length = 359
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 47 QEFYKDQTVFITGATGFLGSLL 68
+ F++ + VF+TG TGF GS L
Sbjct: 4 KNFWQGKRVFVTGHTGFKGSWL 25
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 11/17 (64%), Positives = 14/17 (82%)
Query: 56 FITGATGFLGSLLVEKL 72
+TGATGFLG+ L+E L
Sbjct: 154 LLTGATGFLGAYLIEAL 170
>pdb|2ZCU|A Chain A, Crystal Structure Of A New Type Of Nadph-Dependent
Quinone Oxidoreductase (Qor2) From Escherichia Coli
pdb|2ZCV|A Chain A, Crystal Structure Of Nadph-Dependent Quinone
Oxidoreductase Qor2 Complexed With Nadph From
Escherichia Coli
Length = 286
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 55 VFITGATGFLGSLLVEKLLRCCP 77
+ ITGATG LG ++E L++ P
Sbjct: 2 IAITGATGQLGHYVIESLMKTVP 24
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-glucose 4- Epimerase Complex With Nad
Length = 311
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 55 VFITGATGFLGSLLVEKLL 73
V +TG GF+GS +VE LL
Sbjct: 3 VLVTGGAGFIGSHIVEDLL 21
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 55 VFITGATGFLGSLLVEKLL 73
V +TG TGFLGS +++ LL
Sbjct: 4 VCVTGGTGFLGSWIIKSLL 22
>pdb|4IJM|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
pdb|4IJM|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic A422v
Mutant
Length = 512
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 49 FYKDQTVFITGATGFLGSLLVEKLL 73
F+KD + TGATG +LLV + +
Sbjct: 265 FFKDSIILATGATGTGKTLLVSRFV 289
>pdb|1U9I|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|2GBL|A Chain A, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|B Chain B, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|E Chain E, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|F Chain F, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|3DVL|A Chain A, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|B Chain B, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|C Chain C, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|D Chain D, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|E Chain E, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
pdb|3DVL|F Chain F, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Correct Geometry At Phosphorylation Sites
Length = 519
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 49 FYKDQTVFITGATGFLGSLLVEKLL 73
F+KD + TGATG +LLV + +
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFV 302
>pdb|1U9I|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|1U9I|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic With
Phosphorylation Sites
pdb|2GBL|C Chain C, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
pdb|2GBL|D Chain D, Crystal Structure Of Full Length Circadian Clock Protein
Kaic With Phosphorylation Sites
Length = 519
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 49 FYKDQTVFITGATGFLGSLLVEKLL 73
F+KD + TGATG +LLV + +
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFV 302
>pdb|1TF7|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic
pdb|1TF7|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic
Length = 525
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 49 FYKDQTVFITGATGFLGSLLVEKLL 73
F+KD + TGATG +LLV + +
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFV 302
>pdb|4DUG|D Chain D, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
Length = 519
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 49 FYKDQTVFITGATGFLGSLLVEKLL 73
F+KD + TGATG +LLV + +
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFV 302
>pdb|4DUG|A Chain A, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|B Chain B, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|C Chain C, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|E Chain E, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
pdb|4DUG|F Chain F, Crystal Structure Of Circadian Clock Protein Kaic E318a
Mutant
Length = 519
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 49 FYKDQTVFITGATGFLGSLLVEKLL 73
F+KD + TGATG +LLV + +
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFV 302
>pdb|3S1A|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 525
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 49 FYKDQTVFITGATGFLGSLLVEKLL 73
F+KD + TGATG +LLV + +
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFV 302
>pdb|3S1A|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3S1A|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431eT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 525
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 49 FYKDQTVFITGATGFLGSLLVEKLL 73
F+KD + TGATG +LLV + +
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFV 302
>pdb|3K0F|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0F|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 49 FYKDQTVFITGATGFLGSLLVEKLL 73
F+KD + TGATG +LLV + +
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFV 302
>pdb|3K0F|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant T426aT432A OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 49 FYKDQTVFITGATGFLGSLLVEKLL 73
F+KD + TGATG +LLV + +
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFV 302
>pdb|3K0E|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
pdb|3K0E|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant T426n
Of The Kaic Circadian Clock Protein
Length = 519
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 49 FYKDQTVFITGATGFLGSLLVEKLL 73
F+KD + TGATG +LLV + +
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFV 302
>pdb|3K0C|C Chain C, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|D Chain D, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 49 FYKDQTVFITGATGFLGSLLVEKLL 73
F+KD + TGATG +LLV + +
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFV 302
>pdb|3K0C|A Chain A, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|B Chain B, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|E Chain E, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
pdb|3K0C|F Chain F, Crystal Structure Of The Phosphorylation-Site Double
Mutant S431aT432E OF THE KAIC CIRCADIAN CLOCK PROTEIN
Length = 519
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 49 FYKDQTVFITGATGFLGSLLVEKLL 73
F+KD + TGATG +LLV + +
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFV 302
>pdb|3K0A|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
pdb|3K0A|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 49 FYKDQTVFITGATGFLGSLLVEKLL 73
F+KD + TGATG +LLV + +
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFV 302
>pdb|3K0A|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant S431a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 49 FYKDQTVFITGATGFLGSLLVEKLL 73
F+KD + TGATG +LLV + +
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFV 302
>pdb|3K09|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
Length = 519
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 49 FYKDQTVFITGATGFLGSLLVEKLL 73
F+KD + TGATG +LLV + +
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFV 302
>pdb|3K09|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
pdb|3K09|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant S431d
Of The Kaic Circadian Clock Protein
Length = 519
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 49 FYKDQTVFITGATGFLGSLLVEKLL 73
F+KD + TGATG +LLV + +
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFV 302
>pdb|3JZM|A Chain A, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|B Chain B, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|C Chain C, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|D Chain D, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|E Chain E, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
pdb|3JZM|F Chain F, Crystal Structure Of The Phosphorylation-Site Mutant T432a
Of The Kaic Circadian Clock Protein
Length = 519
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 49 FYKDQTVFITGATGFLGSLLVEKLL 73
F+KD + TGATG +LLV + +
Sbjct: 278 FFKDSIILATGATGTGKTLLVSRFV 302
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 55 VFITGATGFLGSLLVEKLLR 74
V I G GF+G+ L E+LLR
Sbjct: 16 VLILGVNGFIGNHLTERLLR 35
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 55 VFITGATGFLGSLLVEKLLR 74
V I G GF+G+ L E+LLR
Sbjct: 16 VLILGVNGFIGNHLTERLLR 35
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 55 VFITGATGFLGSLLVEKLLR 74
V I G GF+G+ L E+LLR
Sbjct: 16 VLILGVNGFIGNHLTERLLR 35
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 55 VFITGATGFLGSLLVEKLLR 74
V I G GF+G+ L E+LLR
Sbjct: 16 VLILGVNGFIGNHLTERLLR 35
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 55 VFITGATGFLGSLLVEKLLR 74
V I G GF+G+ L E+LLR
Sbjct: 3 VLILGVNGFIGNHLTERLLR 22
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 55 VFITGATGFLGSLLVEKLLR 74
V I G GF+G+ L E+LLR
Sbjct: 16 VLILGVNGFIGNHLTERLLR 35
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 26.9 bits (58), Expect = 3.3, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 55 VFITGATGFLGSLLVEKLLR 74
V I G GF+G+ L E+LLR
Sbjct: 318 VLILGVNGFIGNHLTERLLR 337
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 55 VFITGATGFLGSLLVEKLL 73
+ +TG GF+GS LV+KL+
Sbjct: 3 IVVTGGAGFIGSHLVDKLV 21
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 55 VFITGATGFLGSLLVEKLL 73
+ +TG GF+GS LV+KL+
Sbjct: 3 IVVTGGAGFIGSHLVDKLV 21
>pdb|1SB8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-N-Acetylgalactosamine
pdb|1SB9|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Udp-N-Acetylglucosamine 4- Epimerase Complexed With
Udp-Glucose
Length = 352
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 56 FITGATGFLGSLLVEKLLRCCPQMLSL 82
ITG GF+GS L+E LL+ +++ L
Sbjct: 31 LITGVAGFIGSNLLETLLKLDQKVVGL 57
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 26.6 bits (57), Expect = 3.7, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 46 IQEFYKDQTVFITGATGFLGSLL 68
I + ++QT+ ITG GF+GS L
Sbjct: 4 IDDELENQTILITGGAGFVGSNL 26
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 26.6 bits (57), Expect = 3.8, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 55 VFITGATGFLGSLLVEKLL 73
V +TGA GF+ S +VE+LL
Sbjct: 14 VLVTGANGFVASHVVEQLL 32
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 53 QTVFITGATGFLGSLLVEKLL 73
+ + ITG GF+GS L +KL+
Sbjct: 6 KRILITGGAGFVGSHLTDKLM 26
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase
From Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase
From Sporobolomyces Salmonicolor
Length = 342
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 55 VFITGATGFLGSLLVEKLL 73
V +TGA GF+ S +VE+LL
Sbjct: 14 VLVTGANGFVASHVVEQLL 32
>pdb|2VRC|A Chain A, Crystal Structure Of The Citrobacter Sp.
Triphenylmethane Reductase Complexed With Nadp(h)
pdb|2VRC|B Chain B, Crystal Structure Of The Citrobacter Sp.
Triphenylmethane Reductase Complexed With Nadp(h)
pdb|2VRC|C Chain C, Crystal Structure Of The Citrobacter Sp.
Triphenylmethane Reductase Complexed With Nadp(h)
Length = 287
Score = 25.8 bits (55), Expect = 6.9, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 54 TVFITGATGFLGSLLVEKLLRCCP 77
++ +TGATG LG L+++ L P
Sbjct: 2 SIAVTGATGQLGGLVIQHLXAAVP 25
>pdb|2VRC|D Chain D, Crystal Structure Of The Citrobacter Sp.
Triphenylmethane Reductase Complexed With Nadp(h)
Length = 287
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 54 TVFITGATGFLGSLLVEKLLRCCP 77
++ +TGATG LG L+++ L P
Sbjct: 2 SIAVTGATGQLGGLVIQHLXAAVP 25
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 25.8 bits (55), Expect = 7.2, Method: Composition-based stats.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 53 QTVFITGATGFLGSLLVEKLLR 74
+T + G TGF+ SLLV+ LL+
Sbjct: 10 KTACVVGGTGFVASLLVKLLLQ 31
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,010,883
Number of Sequences: 62578
Number of extensions: 53713
Number of successful extensions: 187
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 137
Number of HSP's gapped (non-prelim): 52
length of query: 84
length of database: 14,973,337
effective HSP length: 52
effective length of query: 32
effective length of database: 11,719,281
effective search space: 375016992
effective search space used: 375016992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)