Query psy8179
Match_columns 84
No_of_seqs 153 out of 1594
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 20:36:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8179.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8179hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1086 Predicted nucleoside-d 98.8 1.2E-08 2.6E-13 80.8 5.1 56 28-83 223-281 (588)
2 KOG1502|consensus 98.7 2.8E-08 6.2E-13 74.4 4.2 33 51-83 5-37 (327)
3 PLN02996 fatty acyl-CoA reduct 98.6 2.9E-08 6.3E-13 76.9 4.0 40 45-84 4-43 (491)
4 PLN02503 fatty acyl-CoA reduct 98.5 9.2E-08 2E-12 76.3 3.6 40 45-84 112-151 (605)
5 PLN02572 UDP-sulfoquinovose sy 98.5 1.5E-07 3.2E-12 72.0 4.5 39 44-82 39-77 (442)
6 PRK15181 Vi polysaccharide bio 98.5 1.6E-07 3.5E-12 68.9 4.2 33 50-82 13-45 (348)
7 PLN02662 cinnamyl-alcohol dehy 98.5 1.7E-07 3.7E-12 67.0 4.1 32 51-82 3-34 (322)
8 PLN02206 UDP-glucuronate decar 98.4 2.8E-07 6E-12 70.7 4.1 32 51-82 118-149 (442)
9 TIGR02622 CDP_4_6_dhtase CDP-g 98.4 3.6E-07 7.9E-12 66.7 4.3 33 50-82 2-34 (349)
10 COG0451 WcaG Nucleoside-diphos 98.4 3.7E-07 8.1E-12 64.4 4.1 29 54-82 2-30 (314)
11 CHL00194 ycf39 Ycf39; Provisio 98.4 3.9E-07 8.4E-12 66.0 4.1 30 53-82 1-30 (317)
12 PLN02166 dTDP-glucose 4,6-dehy 98.4 4.3E-07 9.3E-12 69.5 4.2 31 52-82 120-150 (436)
13 PLN00198 anthocyanidin reducta 98.4 4.7E-07 1E-11 65.6 4.2 33 50-82 7-39 (338)
14 TIGR01472 gmd GDP-mannose 4,6- 98.4 4.7E-07 1E-11 65.9 4.2 30 53-82 1-30 (343)
15 PLN02986 cinnamyl-alcohol dehy 98.3 6E-07 1.3E-11 64.6 4.4 32 51-82 4-35 (322)
16 PLN02427 UDP-apiose/xylose syn 98.3 5.3E-07 1.2E-11 66.7 4.2 31 52-82 14-45 (386)
17 PLN02583 cinnamoyl-CoA reducta 98.3 9.2E-07 2E-11 63.6 4.5 31 52-82 6-36 (297)
18 PLN02653 GDP-mannose 4,6-dehyd 98.3 8.7E-07 1.9E-11 64.3 4.3 33 50-82 4-36 (340)
19 PLN02695 GDP-D-mannose-3',5'-e 98.3 8.5E-07 1.8E-11 66.0 4.2 32 51-82 20-51 (370)
20 PLN02650 dihydroflavonol-4-red 98.3 8.9E-07 1.9E-11 64.6 4.0 31 52-82 5-35 (351)
21 PLN02778 3,5-epimerase/4-reduc 98.3 7.6E-07 1.7E-11 64.5 3.6 29 52-80 9-37 (298)
22 KOG1221|consensus 98.3 8.4E-07 1.8E-11 69.2 3.9 39 46-84 6-44 (467)
23 PRK08125 bifunctional UDP-gluc 98.3 1.1E-06 2.3E-11 70.0 4.4 37 46-82 309-346 (660)
24 PLN02214 cinnamoyl-CoA reducta 98.3 1.2E-06 2.6E-11 64.3 4.4 32 51-82 9-40 (342)
25 PRK11150 rfaD ADP-L-glycero-D- 98.3 1.1E-06 2.4E-11 62.7 4.0 28 55-82 2-29 (308)
26 PLN02896 cinnamyl-alcohol dehy 98.2 1.4E-06 3E-11 63.7 4.4 31 52-82 10-40 (353)
27 COG1087 GalE UDP-glucose 4-epi 98.2 1.2E-06 2.6E-11 65.5 4.1 30 53-82 1-30 (329)
28 PRK11908 NAD-dependent epimera 98.2 1.3E-06 2.8E-11 63.6 4.1 30 53-82 2-32 (347)
29 PLN02686 cinnamoyl-CoA reducta 98.2 1.5E-06 3.2E-11 64.6 4.3 35 48-82 49-83 (367)
30 PLN02989 cinnamyl-alcohol dehy 98.2 1.8E-06 4E-11 62.0 4.3 31 52-82 5-35 (325)
31 PRK09987 dTDP-4-dehydrorhamnos 98.2 1.6E-06 3.5E-11 62.5 3.8 28 53-81 1-28 (299)
32 KOG1429|consensus 98.2 1.7E-06 3.6E-11 64.7 3.9 32 51-82 26-57 (350)
33 PLN02240 UDP-glucose 4-epimera 98.2 2.2E-06 4.7E-11 62.1 4.3 33 50-82 3-35 (352)
34 PF01370 Epimerase: NAD depend 98.2 2.4E-06 5.2E-11 58.0 4.1 28 55-82 1-28 (236)
35 PRK10217 dTDP-glucose 4,6-dehy 98.1 3.1E-06 6.6E-11 61.6 4.4 29 53-81 2-30 (355)
36 PRK10675 UDP-galactose-4-epime 98.1 3.1E-06 6.6E-11 61.0 4.1 30 53-82 1-30 (338)
37 COG0702 Predicted nucleoside-d 98.1 3.3E-06 7.1E-11 58.5 4.0 30 53-82 1-30 (275)
38 TIGR01777 yfcH conserved hypot 98.1 2.8E-06 6.1E-11 59.5 3.5 28 55-82 1-28 (292)
39 PLN02260 probable rhamnose bio 98.1 3.3E-06 7.2E-11 66.9 4.1 33 49-81 3-37 (668)
40 TIGR01214 rmlD dTDP-4-dehydror 98.0 5.2E-06 1.1E-10 58.4 3.6 29 54-82 1-29 (287)
41 KOG1371|consensus 98.0 5.5E-06 1.2E-10 62.4 3.9 31 52-82 2-32 (343)
42 PRK10084 dTDP-glucose 4,6 dehy 98.0 7.1E-06 1.5E-10 59.6 4.3 27 53-79 1-27 (352)
43 TIGR03589 PseB UDP-N-acetylglu 98.0 7.1E-06 1.5E-10 59.8 4.2 32 50-81 2-35 (324)
44 PRK09135 pteridine reductase; 98.0 9.3E-06 2E-10 55.5 4.3 32 51-82 5-36 (249)
45 TIGR03649 ergot_EASG ergot alk 98.0 7.4E-06 1.6E-10 58.0 3.9 29 54-82 1-29 (285)
46 PLN02657 3,8-divinyl protochlo 98.0 8.5E-06 1.8E-10 61.3 4.2 33 50-82 58-90 (390)
47 PRK12429 3-hydroxybutyrate deh 98.0 1E-05 2.2E-10 55.7 4.3 33 50-82 2-34 (258)
48 PRK05557 fabG 3-ketoacyl-(acyl 98.0 1.1E-05 2.4E-10 54.8 4.4 33 50-82 3-35 (248)
49 TIGR03466 HpnA hopanoid-associ 98.0 8.9E-06 1.9E-10 57.8 4.0 30 53-82 1-30 (328)
50 PLN00016 RNA-binding protein; 98.0 9.7E-06 2.1E-10 60.2 4.2 33 51-83 51-87 (378)
51 PRK07806 short chain dehydroge 98.0 1.3E-05 2.9E-10 55.2 4.6 33 50-82 4-36 (248)
52 PRK12826 3-ketoacyl-(acyl-carr 98.0 1.2E-05 2.6E-10 55.0 4.3 33 50-82 4-36 (251)
53 PRK12320 hypothetical protein; 98.0 8.8E-06 1.9E-10 66.1 4.1 30 53-82 1-30 (699)
54 PRK06194 hypothetical protein; 98.0 1.1E-05 2.5E-10 56.8 4.2 33 50-82 4-36 (287)
55 PF13460 NAD_binding_10: NADH( 97.9 1.2E-05 2.6E-10 53.3 3.9 28 55-82 1-28 (183)
56 PLN00141 Tic62-NAD(P)-related 97.9 1.4E-05 3.1E-10 55.9 4.4 33 50-82 15-47 (251)
57 PRK12825 fabG 3-ketoacyl-(acyl 97.9 1.6E-05 3.4E-10 54.0 4.4 31 51-81 5-35 (249)
58 PF01073 3Beta_HSD: 3-beta hyd 97.9 6.7E-06 1.5E-10 59.5 2.6 26 56-81 1-28 (280)
59 PRK13394 3-hydroxybutyrate deh 97.9 1.6E-05 3.5E-10 54.9 4.4 33 50-82 5-37 (262)
60 PRK12829 short chain dehydroge 97.9 1.8E-05 3.9E-10 54.7 4.6 34 49-82 8-41 (264)
61 PRK05717 oxidoreductase; Valid 97.9 1.6E-05 3.5E-10 55.3 4.3 34 49-82 7-40 (255)
62 PRK07201 short chain dehydroge 97.9 1.2E-05 2.6E-10 62.9 3.9 30 53-82 1-32 (657)
63 TIGR01746 Thioester-redct thio 97.9 1.2E-05 2.6E-10 57.4 3.6 29 54-82 1-31 (367)
64 PRK07890 short chain dehydroge 97.9 2E-05 4.4E-10 54.4 4.6 33 50-82 3-35 (258)
65 PRK12828 short chain dehydroge 97.9 1.9E-05 4.2E-10 53.5 4.3 33 50-82 5-37 (239)
66 PRK07231 fabG 3-ketoacyl-(acyl 97.9 1.9E-05 4.2E-10 54.1 4.3 33 50-82 3-35 (251)
67 PRK05653 fabG 3-ketoacyl-(acyl 97.9 2E-05 4.4E-10 53.5 4.3 33 50-82 3-35 (246)
68 PRK07774 short chain dehydroge 97.9 2.1E-05 4.5E-10 54.1 4.3 33 50-82 4-36 (250)
69 PRK12746 short chain dehydroge 97.9 2E-05 4.3E-10 54.5 4.2 32 50-81 4-35 (254)
70 TIGR03206 benzo_BadH 2-hydroxy 97.9 2.1E-05 4.6E-10 54.0 4.3 32 51-82 2-33 (250)
71 PLN02725 GDP-4-keto-6-deoxyman 97.9 1.1E-05 2.3E-10 57.1 2.6 27 56-82 1-27 (306)
72 PRK07523 gluconate 5-dehydroge 97.8 2.6E-05 5.5E-10 54.1 4.4 33 50-82 8-40 (255)
73 PRK12827 short chain dehydroge 97.8 2.7E-05 5.8E-10 53.2 4.4 33 50-82 4-36 (249)
74 PRK12823 benD 1,6-dihydroxycyc 97.8 2.5E-05 5.5E-10 54.2 4.3 33 50-82 6-38 (260)
75 TIGR01832 kduD 2-deoxy-D-gluco 97.8 2.6E-05 5.5E-10 53.7 4.3 33 50-82 3-35 (248)
76 COG1090 Predicted nucleoside-d 97.8 1.5E-05 3.3E-10 59.1 3.3 28 55-82 1-28 (297)
77 PRK09186 flagellin modificatio 97.8 2.6E-05 5.6E-10 53.8 4.2 33 50-82 2-34 (256)
78 PRK06077 fabG 3-ketoacyl-(acyl 97.8 2.8E-05 6.2E-10 53.4 4.4 31 51-81 5-35 (252)
79 PRK06914 short chain dehydroge 97.8 2.6E-05 5.7E-10 54.8 4.3 32 51-82 2-33 (280)
80 TIGR01963 PHB_DH 3-hydroxybuty 97.8 2.5E-05 5.4E-10 53.7 4.1 30 53-82 2-31 (255)
81 TIGR02197 heptose_epim ADP-L-g 97.8 1.7E-05 3.7E-10 56.2 3.2 27 55-81 1-28 (314)
82 PRK06482 short chain dehydroge 97.8 2.8E-05 6.1E-10 54.6 4.3 30 53-82 3-32 (276)
83 PRK06057 short chain dehydroge 97.8 3.1E-05 6.7E-10 53.8 4.3 33 50-82 5-37 (255)
84 PRK06180 short chain dehydroge 97.8 3E-05 6.4E-10 54.8 4.2 32 51-82 3-34 (277)
85 PRK08642 fabG 3-ketoacyl-(acyl 97.8 3.5E-05 7.5E-10 53.0 4.3 32 51-82 4-35 (253)
86 TIGR01181 dTDP_gluc_dehyt dTDP 97.8 2.5E-05 5.4E-10 55.0 3.7 28 54-81 1-30 (317)
87 PRK05875 short chain dehydroge 97.8 3.6E-05 7.8E-10 54.0 4.5 33 50-82 5-37 (276)
88 PRK08063 enoyl-(acyl carrier p 97.8 3.7E-05 7.9E-10 52.9 4.4 32 51-82 3-34 (250)
89 PRK06179 short chain dehydroge 97.8 3.4E-05 7.4E-10 53.9 4.2 32 51-82 3-34 (270)
90 PF07993 NAD_binding_4: Male s 97.8 2.5E-05 5.3E-10 55.0 3.4 23 57-79 1-23 (249)
91 PRK08263 short chain dehydroge 97.8 4.1E-05 8.8E-10 54.0 4.5 32 51-82 2-33 (275)
92 PRK06128 oxidoreductase; Provi 97.8 4.5E-05 9.8E-10 54.7 4.6 34 50-83 53-86 (300)
93 PRK07814 short chain dehydroge 97.8 4.5E-05 9.7E-10 53.4 4.5 33 50-82 8-40 (263)
94 PRK08213 gluconate 5-dehydroge 97.8 4.5E-05 9.8E-10 53.0 4.4 33 50-82 10-42 (259)
95 PRK06138 short chain dehydroge 97.8 4.3E-05 9.3E-10 52.5 4.3 33 50-82 3-35 (252)
96 PRK07067 sorbitol dehydrogenas 97.7 4.4E-05 9.6E-10 53.0 4.3 33 50-82 4-36 (257)
97 PRK08220 2,3-dihydroxybenzoate 97.7 4.9E-05 1.1E-09 52.3 4.5 33 50-82 6-38 (252)
98 PRK08264 short chain dehydroge 97.7 4.8E-05 1E-09 52.1 4.4 33 50-82 4-37 (238)
99 PRK06197 short chain dehydroge 97.7 4.3E-05 9.3E-10 54.8 4.3 33 50-82 14-46 (306)
100 PRK07326 short chain dehydroge 97.7 5E-05 1.1E-09 51.8 4.4 32 51-82 5-36 (237)
101 PRK12937 short chain dehydroge 97.7 4.8E-05 1E-09 52.1 4.2 33 50-82 3-35 (245)
102 PRK12747 short chain dehydroge 97.7 5.1E-05 1.1E-09 52.6 4.3 33 50-82 2-34 (252)
103 TIGR03325 BphB_TodD cis-2,3-di 97.7 5.4E-05 1.2E-09 52.9 4.5 33 50-82 3-35 (262)
104 TIGR01179 galE UDP-glucose-4-e 97.7 3.8E-05 8.2E-10 54.2 3.7 29 54-82 1-29 (328)
105 PRK09291 short chain dehydroge 97.7 4.9E-05 1.1E-09 52.5 4.2 31 52-82 2-32 (257)
106 PRK06500 short chain dehydroge 97.7 5.2E-05 1.1E-09 52.0 4.3 33 50-82 4-36 (249)
107 PRK06523 short chain dehydroge 97.7 5.7E-05 1.2E-09 52.4 4.5 33 50-82 7-39 (260)
108 PRK08226 short chain dehydroge 97.7 5.2E-05 1.1E-09 52.7 4.2 33 50-82 4-36 (263)
109 PRK08703 short chain dehydroge 97.7 5.7E-05 1.2E-09 51.9 4.4 33 50-82 4-36 (239)
110 PRK07577 short chain dehydroge 97.7 5.7E-05 1.2E-09 51.4 4.3 32 51-82 2-33 (234)
111 PRK08945 putative oxoacyl-(acy 97.7 5.9E-05 1.3E-09 52.1 4.4 34 49-82 9-42 (247)
112 PRK09072 short chain dehydroge 97.7 5.6E-05 1.2E-09 52.7 4.3 32 51-82 4-35 (263)
113 PRK06841 short chain dehydroge 97.7 6.2E-05 1.4E-09 52.0 4.5 33 50-82 13-45 (255)
114 PRK12742 oxidoreductase; Provi 97.7 5.7E-05 1.2E-09 51.5 4.3 33 50-82 4-36 (237)
115 PRK06949 short chain dehydroge 97.7 6E-05 1.3E-09 52.1 4.4 33 50-82 7-39 (258)
116 PRK12745 3-ketoacyl-(acyl-carr 97.7 5.3E-05 1.1E-09 52.3 4.1 30 53-82 3-32 (256)
117 PRK05565 fabG 3-ketoacyl-(acyl 97.7 5.9E-05 1.3E-09 51.4 4.2 33 50-82 3-35 (247)
118 PRK08628 short chain dehydroge 97.7 6.3E-05 1.4E-09 52.2 4.4 33 50-82 5-37 (258)
119 PRK06196 oxidoreductase; Provi 97.7 5.7E-05 1.2E-09 54.5 4.3 33 50-82 24-56 (315)
120 PRK07666 fabG 3-ketoacyl-(acyl 97.7 6E-05 1.3E-09 51.7 4.3 33 50-82 5-37 (239)
121 PLN03209 translocon at the inn 97.7 5.3E-05 1.1E-09 60.5 4.5 34 49-82 77-110 (576)
122 PRK05786 fabG 3-ketoacyl-(acyl 97.7 6.9E-05 1.5E-09 51.2 4.5 32 51-82 4-35 (238)
123 PRK07102 short chain dehydroge 97.7 6.2E-05 1.3E-09 51.8 4.3 30 53-82 2-31 (243)
124 PLN02253 xanthoxin dehydrogena 97.7 6.7E-05 1.4E-09 52.8 4.5 33 50-82 16-48 (280)
125 PRK09730 putative NAD(P)-bindi 97.7 6.3E-05 1.4E-09 51.4 4.2 30 53-82 2-31 (247)
126 PRK07035 short chain dehydroge 97.7 7.3E-05 1.6E-09 51.7 4.5 33 50-82 6-38 (252)
127 PRK08278 short chain dehydroge 97.7 7E-05 1.5E-09 53.0 4.5 33 50-82 4-36 (273)
128 PRK10538 malonic semialdehyde 97.7 6.3E-05 1.4E-09 52.2 4.1 30 53-82 1-30 (248)
129 PRK09134 short chain dehydroge 97.7 7.1E-05 1.5E-09 52.1 4.4 32 51-82 8-39 (258)
130 PRK06182 short chain dehydroge 97.7 6.9E-05 1.5E-09 52.7 4.3 32 51-82 2-33 (273)
131 PRK12936 3-ketoacyl-(acyl-carr 97.7 7.3E-05 1.6E-09 51.0 4.3 31 50-80 4-34 (245)
132 PLN02260 probable rhamnose bio 97.7 4.3E-05 9.4E-10 60.6 3.6 29 52-80 380-408 (668)
133 PRK07023 short chain dehydroge 97.7 6.8E-05 1.5E-09 51.6 4.1 30 53-82 2-31 (243)
134 PRK06550 fabG 3-ketoacyl-(acyl 97.6 7.1E-05 1.5E-09 51.1 4.0 33 50-82 3-35 (235)
135 PRK12939 short chain dehydroge 97.6 8E-05 1.7E-09 51.0 4.2 33 50-82 5-37 (250)
136 COG1088 RfbB dTDP-D-glucose 4, 97.6 5.8E-05 1.2E-09 56.7 3.7 30 53-82 1-30 (340)
137 PRK12384 sorbitol-6-phosphate 97.6 8.8E-05 1.9E-09 51.5 4.4 31 52-82 2-32 (259)
138 PRK12935 acetoacetyl-CoA reduc 97.6 8.4E-05 1.8E-09 51.1 4.2 32 50-81 4-35 (247)
139 PRK08017 oxidoreductase; Provi 97.6 8.7E-05 1.9E-09 51.2 4.3 30 53-82 3-32 (256)
140 PRK12938 acetyacetyl-CoA reduc 97.6 9.1E-05 2E-09 50.9 4.3 31 51-81 2-32 (246)
141 PRK12367 short chain dehydroge 97.6 9.6E-05 2.1E-09 52.2 4.5 35 48-82 10-44 (245)
142 PRK06171 sorbitol-6-phosphate 97.6 9E-05 2E-09 51.7 4.3 33 50-82 7-39 (266)
143 PRK07063 short chain dehydroge 97.6 9.9E-05 2.1E-09 51.3 4.5 33 50-82 5-37 (260)
144 PRK07453 protochlorophyllide o 97.6 8.7E-05 1.9E-09 53.7 4.3 32 51-82 5-36 (322)
145 PRK06924 short chain dehydroge 97.6 8.6E-05 1.9E-09 51.2 4.1 30 53-82 2-31 (251)
146 PRK06101 short chain dehydroge 97.6 8.7E-05 1.9E-09 51.3 4.1 30 53-82 2-31 (240)
147 PRK07060 short chain dehydroge 97.6 9.5E-05 2.1E-09 50.6 4.3 33 50-82 7-39 (245)
148 PRK05876 short chain dehydroge 97.6 9E-05 1.9E-09 52.7 4.3 33 50-82 4-36 (275)
149 PRK08267 short chain dehydroge 97.6 9E-05 1.9E-09 51.5 4.2 30 53-82 2-31 (260)
150 PF04321 RmlD_sub_bind: RmlD s 97.6 5.1E-05 1.1E-09 54.8 3.0 30 53-82 1-30 (286)
151 PRK08643 acetoin reductase; Va 97.6 9.9E-05 2.1E-09 51.1 4.3 31 52-82 2-32 (256)
152 PRK06935 2-deoxy-D-gluconate 3 97.6 9.7E-05 2.1E-09 51.4 4.3 33 50-82 13-45 (258)
153 PRK12744 short chain dehydroge 97.6 0.00011 2.3E-09 51.2 4.5 33 50-82 6-38 (257)
154 PRK08219 short chain dehydroge 97.6 9.9E-05 2.1E-09 49.8 4.2 30 52-82 3-32 (227)
155 PRK07856 short chain dehydroge 97.6 9.8E-05 2.1E-09 51.2 4.2 33 50-82 4-36 (252)
156 PRK06172 short chain dehydroge 97.6 0.0001 2.2E-09 51.0 4.3 33 50-82 5-37 (253)
157 PRK05867 short chain dehydroge 97.6 0.0001 2.2E-09 51.2 4.3 33 50-82 7-39 (253)
158 PRK07775 short chain dehydroge 97.6 0.00011 2.4E-09 51.9 4.5 32 51-82 9-40 (274)
159 PRK07825 short chain dehydroge 97.6 9.9E-05 2.1E-09 51.8 4.3 33 50-82 3-35 (273)
160 PRK06200 2,3-dihydroxy-2,3-dih 97.6 0.00011 2.4E-09 51.2 4.5 33 50-82 4-36 (263)
161 PRK06398 aldose dehydrogenase; 97.6 0.00011 2.3E-09 51.6 4.3 33 50-82 4-36 (258)
162 PRK06114 short chain dehydroge 97.6 0.00012 2.5E-09 51.0 4.5 33 50-82 6-38 (254)
163 PRK12743 oxidoreductase; Provi 97.6 0.00012 2.5E-09 51.1 4.5 31 52-82 2-32 (256)
164 PRK06701 short chain dehydroge 97.6 0.0001 2.2E-09 52.9 4.3 34 49-82 43-76 (290)
165 PRK06463 fabG 3-ketoacyl-(acyl 97.6 0.00012 2.6E-09 50.9 4.5 33 50-82 5-37 (255)
166 PRK05866 short chain dehydroge 97.6 0.00012 2.7E-09 52.7 4.5 33 50-82 38-70 (293)
167 PRK07024 short chain dehydroge 97.6 0.00011 2.5E-09 51.1 4.2 30 53-82 3-32 (257)
168 PRK08251 short chain dehydroge 97.6 0.00012 2.7E-09 50.3 4.3 30 52-81 2-31 (248)
169 PRK08416 7-alpha-hydroxysteroi 97.6 0.00012 2.6E-09 51.2 4.2 34 49-82 5-38 (260)
170 PRK08589 short chain dehydroge 97.6 0.00013 2.9E-09 51.5 4.5 33 50-82 4-36 (272)
171 PRK07074 short chain dehydroge 97.5 0.00013 2.8E-09 50.6 4.3 31 52-82 2-32 (257)
172 PRK06181 short chain dehydroge 97.5 0.00013 2.8E-09 50.7 4.4 30 53-82 2-31 (263)
173 PRK08277 D-mannonate oxidoredu 97.5 0.00014 3.1E-09 51.1 4.5 33 50-82 8-40 (278)
174 PRK09620 hypothetical protein; 97.5 0.00014 3E-09 51.8 4.4 33 51-83 2-50 (229)
175 PRK05993 short chain dehydroge 97.5 0.00013 2.8E-09 51.7 4.2 31 52-82 4-34 (277)
176 TIGR01829 AcAcCoA_reduct aceto 97.5 0.00014 3.1E-09 49.5 4.3 30 53-82 1-30 (242)
177 PRK08085 gluconate 5-dehydroge 97.5 0.00014 3.1E-09 50.4 4.3 33 50-82 7-39 (254)
178 PRK06124 gluconate 5-dehydroge 97.5 0.00016 3.4E-09 50.1 4.5 33 50-82 9-41 (256)
179 PRK05865 hypothetical protein; 97.5 0.0001 2.2E-09 61.2 4.1 30 53-82 1-30 (854)
180 PRK06123 short chain dehydroge 97.5 0.00014 3E-09 50.0 4.2 31 52-82 2-32 (248)
181 PRK05693 short chain dehydroge 97.5 0.00013 2.8E-09 51.3 4.1 30 53-82 2-31 (274)
182 PRK08265 short chain dehydroge 97.5 0.00015 3.2E-09 50.9 4.3 33 50-82 4-36 (261)
183 PRK07985 oxidoreductase; Provi 97.5 0.00014 3.1E-09 52.2 4.3 33 50-82 47-79 (294)
184 PRK07062 short chain dehydroge 97.5 0.00017 3.8E-09 50.2 4.6 33 50-82 6-38 (265)
185 PRK07576 short chain dehydroge 97.5 0.00017 3.6E-09 50.7 4.5 33 50-82 7-39 (264)
186 PRK06113 7-alpha-hydroxysteroi 97.5 0.00017 3.7E-09 50.1 4.5 33 50-82 9-41 (255)
187 PF02719 Polysacc_synt_2: Poly 97.5 0.00011 2.3E-09 54.6 3.5 27 55-81 1-27 (293)
188 PRK08177 short chain dehydroge 97.5 0.00015 3.3E-09 49.5 4.1 30 53-82 2-31 (225)
189 PRK07478 short chain dehydroge 97.5 0.00019 4E-09 49.8 4.5 33 50-82 4-36 (254)
190 KOG1430|consensus 97.5 0.00013 2.8E-09 55.5 4.0 31 51-81 3-35 (361)
191 PRK07454 short chain dehydroge 97.5 0.00017 3.7E-09 49.5 4.3 31 52-82 6-36 (241)
192 PRK06947 glucose-1-dehydrogena 97.5 0.00019 4.1E-09 49.4 4.3 30 53-82 3-32 (248)
193 PRK06953 short chain dehydroge 97.5 0.00017 3.8E-09 49.2 4.1 30 53-82 2-31 (222)
194 PRK05854 short chain dehydroge 97.5 0.0002 4.2E-09 52.0 4.4 33 50-82 12-44 (313)
195 PRK08936 glucose-1-dehydrogena 97.4 0.00022 4.7E-09 49.7 4.4 33 50-82 5-37 (261)
196 PRK05650 short chain dehydroge 97.4 0.0002 4.3E-09 50.3 4.2 30 53-82 1-30 (270)
197 PRK12481 2-deoxy-D-gluconate 3 97.4 0.00021 4.5E-09 49.9 4.2 33 50-82 6-38 (251)
198 PRK06198 short chain dehydroge 97.4 0.00022 4.8E-09 49.4 4.3 32 50-81 4-36 (260)
199 PRK07792 fabG 3-ketoacyl-(acyl 97.4 0.00023 5E-09 51.4 4.5 33 50-82 10-42 (306)
200 PRK09242 tropinone reductase; 97.4 0.00024 5.3E-09 49.3 4.5 33 50-82 7-39 (257)
201 PRK06483 dihydromonapterin red 97.4 0.00026 5.5E-09 48.6 4.5 31 52-82 2-32 (236)
202 PRK08217 fabG 3-ketoacyl-(acyl 97.4 0.00026 5.6E-09 48.4 4.3 33 50-82 3-35 (253)
203 PRK07097 gluconate 5-dehydroge 97.4 0.00027 5.9E-09 49.4 4.3 33 50-82 8-40 (265)
204 PRK08339 short chain dehydroge 97.4 0.0003 6.6E-09 49.6 4.5 33 50-82 6-38 (263)
205 COG3320 Putative dehydrogenase 97.4 0.00023 5E-09 54.5 4.0 25 53-77 1-25 (382)
206 PRK12824 acetoacetyl-CoA reduc 97.3 0.00034 7.3E-09 47.7 4.3 30 53-82 3-32 (245)
207 PRK08993 2-deoxy-D-gluconate 3 97.3 0.00034 7.4E-09 48.7 4.3 33 50-82 8-40 (253)
208 PRK07424 bifunctional sterol d 97.3 0.0003 6.4E-09 54.0 4.3 33 50-82 176-208 (406)
209 PRK07069 short chain dehydroge 97.3 0.0003 6.6E-09 48.2 3.9 28 55-82 2-29 (251)
210 TIGR02415 23BDH acetoin reduct 97.3 0.00037 8.1E-09 48.0 4.3 30 53-82 1-30 (254)
211 TIGR01830 3oxo_ACP_reduc 3-oxo 97.3 0.00026 5.6E-09 48.0 3.4 28 55-82 1-28 (239)
212 PF05368 NmrA: NmrA-like famil 97.3 0.00034 7.4E-09 48.2 4.0 29 55-83 1-29 (233)
213 PRK07109 short chain dehydroge 97.3 0.00036 7.8E-09 51.3 4.2 33 50-82 6-38 (334)
214 PRK07904 short chain dehydroge 97.3 0.00039 8.4E-09 48.9 4.2 33 50-82 6-39 (253)
215 PRK07677 short chain dehydroge 97.3 0.00045 9.7E-09 47.9 4.4 31 52-82 1-31 (252)
216 PRK07831 short chain dehydroge 97.3 0.00064 1.4E-08 47.4 5.2 34 49-82 14-48 (262)
217 PRK12748 3-ketoacyl-(acyl-carr 97.3 0.00045 9.8E-09 48.0 4.4 32 51-82 4-37 (256)
218 TIGR02685 pter_reduc_Leis pter 97.3 0.0004 8.8E-09 48.7 4.1 30 53-82 2-31 (267)
219 PRK09009 C factor cell-cell si 97.3 0.00042 9.1E-09 47.4 4.0 27 53-79 1-27 (235)
220 PF01118 Semialdhyde_dh: Semia 97.2 0.0005 1.1E-08 43.9 4.0 29 54-83 1-29 (121)
221 PRK05884 short chain dehydroge 97.2 0.00054 1.2E-08 47.3 4.2 30 53-82 1-30 (223)
222 PRK05872 short chain dehydroge 97.2 0.00057 1.2E-08 49.0 4.5 33 50-82 7-39 (296)
223 TIGR01831 fabG_rel 3-oxoacyl-( 97.2 0.00042 9.1E-09 47.4 3.5 28 55-82 1-28 (239)
224 PRK07832 short chain dehydroge 97.2 0.00055 1.2E-08 48.1 4.1 30 53-82 1-30 (272)
225 PRK08309 short chain dehydroge 97.2 0.0006 1.3E-08 46.7 3.9 29 53-82 1-29 (177)
226 PLN02780 ketoreductase/ oxidor 97.1 0.00068 1.5E-08 49.7 4.3 32 51-82 52-83 (320)
227 TIGR02632 RhaD_aldol-ADH rhamn 97.1 0.00068 1.5E-08 54.6 4.3 33 50-82 412-444 (676)
228 PRK08340 glucose-1-dehydrogena 97.1 0.00076 1.6E-08 47.0 4.0 30 53-82 1-30 (259)
229 smart00822 PKS_KR This enzymat 97.1 0.00098 2.1E-08 42.4 4.3 26 53-78 1-26 (180)
230 PRK06139 short chain dehydroge 97.1 0.00074 1.6E-08 49.8 4.1 33 50-82 5-37 (330)
231 PRK06125 short chain dehydroge 97.1 0.0011 2.3E-08 46.2 4.5 33 50-82 5-37 (259)
232 PRK07201 short chain dehydroge 97.1 0.00078 1.7E-08 52.8 4.2 33 50-82 369-401 (657)
233 PRK05855 short chain dehydroge 97.0 0.00087 1.9E-08 51.0 4.2 33 50-82 313-345 (582)
234 PRK14982 acyl-ACP reductase; P 97.0 0.0006 1.3E-08 51.4 3.3 27 49-75 152-178 (340)
235 PRK06720 hypothetical protein; 97.0 0.0013 2.8E-08 44.6 4.5 34 50-83 14-47 (169)
236 PRK07791 short chain dehydroge 97.0 0.0012 2.5E-08 47.3 4.2 33 50-82 4-36 (286)
237 TIGR03443 alpha_am_amid L-amin 97.0 0.00096 2.1E-08 56.3 4.3 25 52-76 971-995 (1389)
238 PRK07041 short chain dehydroge 97.0 0.00081 1.8E-08 45.7 3.2 27 56-82 1-27 (230)
239 COG0300 DltE Short-chain dehyd 96.9 0.0014 3.1E-08 47.9 4.1 33 50-82 4-36 (265)
240 PRK08303 short chain dehydroge 96.9 0.0017 3.8E-08 47.2 4.4 33 50-82 6-38 (305)
241 PRK08324 short chain dehydroge 96.9 0.0014 3.1E-08 52.6 4.2 33 50-82 420-452 (681)
242 PRK12859 3-ketoacyl-(acyl-carr 96.9 0.0019 4.2E-08 45.0 4.4 33 50-82 4-38 (256)
243 PRK08261 fabG 3-ketoacyl-(acyl 96.7 0.0022 4.8E-08 48.5 4.2 33 50-82 208-240 (450)
244 PRK06484 short chain dehydroge 96.7 0.0025 5.3E-08 48.8 4.4 33 50-82 267-299 (520)
245 PRK06079 enoyl-(acyl carrier p 96.6 0.0033 7E-08 44.0 4.2 33 50-82 5-39 (252)
246 PRK07578 short chain dehydroge 96.6 0.0033 7.1E-08 42.1 4.0 28 53-81 1-28 (199)
247 PRK06732 phosphopantothenate-- 96.6 0.003 6.4E-08 44.8 3.9 25 59-83 23-47 (229)
248 TIGR01289 LPOR light-dependent 96.6 0.0038 8.3E-08 45.3 4.5 31 52-82 3-34 (314)
249 PRK06505 enoyl-(acyl carrier p 96.6 0.004 8.6E-08 44.3 4.3 33 50-82 5-39 (271)
250 COG1089 Gmd GDP-D-mannose dehy 96.5 0.0038 8.1E-08 47.0 4.2 32 52-83 2-33 (345)
251 PRK06484 short chain dehydroge 96.5 0.0037 8E-08 47.8 4.2 32 51-82 4-35 (520)
252 PRK07533 enoyl-(acyl carrier p 96.5 0.0053 1.1E-07 43.0 4.6 33 50-82 8-42 (258)
253 PRK08690 enoyl-(acyl carrier p 96.4 0.0053 1.1E-07 43.2 4.3 33 50-82 4-38 (261)
254 PF00106 adh_short: short chai 96.4 0.0065 1.4E-07 39.2 4.3 28 53-80 1-28 (167)
255 PRK05579 bifunctional phosphop 96.3 0.0052 1.1E-07 47.1 4.0 34 50-83 186-235 (399)
256 cd01078 NAD_bind_H4MPT_DH NADP 96.3 0.0071 1.5E-07 41.1 4.3 33 50-82 26-58 (194)
257 PRK14874 aspartate-semialdehyd 96.3 0.0052 1.1E-07 45.7 3.7 27 53-79 2-28 (334)
258 PRK07370 enoyl-(acyl carrier p 96.2 0.0083 1.8E-07 42.1 4.4 33 50-82 4-38 (258)
259 PRK08594 enoyl-(acyl carrier p 96.2 0.0082 1.8E-07 42.2 4.4 33 50-82 5-39 (257)
260 COG2910 Putative NADH-flavin r 96.2 0.0076 1.7E-07 42.8 4.1 31 53-83 1-31 (211)
261 PRK05671 aspartate-semialdehyd 96.2 0.0064 1.4E-07 45.7 3.9 30 53-82 5-34 (336)
262 PRK07984 enoyl-(acyl carrier p 96.2 0.0089 1.9E-07 42.4 4.5 33 50-82 4-38 (262)
263 COG1028 FabG Dehydrogenases wi 96.2 0.009 1.9E-07 41.1 4.3 33 50-82 3-35 (251)
264 PRK06603 enoyl-(acyl carrier p 96.2 0.0098 2.1E-07 41.8 4.5 33 50-82 6-40 (260)
265 PRK08862 short chain dehydroge 96.1 0.0094 2E-07 41.4 4.2 33 50-82 3-35 (227)
266 PRK07889 enoyl-(acyl carrier p 96.1 0.0098 2.1E-07 41.7 4.2 32 50-81 5-38 (256)
267 PRK08415 enoyl-(acyl carrier p 96.1 0.012 2.5E-07 42.1 4.5 33 50-82 3-37 (274)
268 PRK08159 enoyl-(acyl carrier p 96.1 0.011 2.3E-07 42.1 4.2 34 49-82 7-42 (272)
269 TIGR01500 sepiapter_red sepiap 95.9 0.014 3E-07 40.7 4.3 29 54-82 2-34 (256)
270 PRK06997 enoyl-(acyl carrier p 95.9 0.014 3.1E-07 41.0 4.4 33 50-82 4-38 (260)
271 KOG0747|consensus 95.9 0.0057 1.2E-07 45.9 2.3 31 52-82 6-36 (331)
272 KOG1203|consensus 95.9 0.011 2.4E-07 45.8 3.9 33 50-82 77-109 (411)
273 TIGR00715 precor6x_red precorr 95.8 0.011 2.4E-07 42.9 3.6 29 53-82 1-29 (256)
274 COG4221 Short-chain alcohol de 95.8 0.016 3.5E-07 42.2 4.1 31 51-81 5-35 (246)
275 PRK08664 aspartate-semialdehyd 95.7 0.014 3E-07 43.6 3.7 23 53-75 4-26 (349)
276 PRK06940 short chain dehydroge 95.7 0.017 3.6E-07 41.0 3.9 29 52-82 2-30 (275)
277 KOG1431|consensus 95.7 0.012 2.7E-07 43.4 3.2 25 53-77 2-26 (315)
278 PLN02383 aspartate semialdehyd 95.6 0.016 3.5E-07 43.6 3.8 31 52-82 7-37 (344)
279 KOG1205|consensus 95.6 0.024 5.2E-07 41.9 4.5 35 48-82 8-42 (282)
280 TIGR01296 asd_B aspartate-semi 95.5 0.014 3E-07 43.7 3.1 29 54-82 1-29 (339)
281 cd01336 MDH_cytoplasmic_cytoso 95.5 0.022 4.8E-07 42.4 4.1 24 53-76 3-26 (325)
282 PRK05599 hypothetical protein; 95.3 0.027 5.9E-07 39.2 3.9 29 53-82 1-29 (246)
283 TIGR01850 argC N-acetyl-gamma- 95.2 0.025 5.4E-07 42.4 3.7 29 53-82 1-29 (346)
284 PLN02968 Probable N-acetyl-gam 95.1 0.031 6.6E-07 42.7 3.9 25 51-75 37-61 (381)
285 PLN02730 enoyl-[acyl-carrier-p 95.1 0.035 7.5E-07 40.9 4.0 32 50-81 7-40 (303)
286 PRK08040 putative semialdehyde 95.0 0.034 7.3E-07 41.9 3.7 30 51-80 3-32 (336)
287 COG1091 RfbD dTDP-4-dehydrorha 95.0 0.025 5.5E-07 41.8 3.0 29 53-82 1-29 (281)
288 TIGR00978 asd_EA aspartate-sem 94.9 0.036 7.8E-07 41.3 3.7 29 53-81 1-30 (341)
289 TIGR01851 argC_other N-acetyl- 94.7 0.042 9.1E-07 41.2 3.7 29 54-83 3-31 (310)
290 PLN00015 protochlorophyllide r 94.7 0.036 7.8E-07 40.0 3.2 27 56-82 1-28 (308)
291 TIGR01915 npdG NADPH-dependent 94.6 0.063 1.4E-06 37.3 4.1 29 53-81 1-29 (219)
292 PRK11863 N-acetyl-gamma-glutam 94.5 0.052 1.1E-06 40.6 3.9 30 53-83 3-32 (313)
293 PRK00436 argC N-acetyl-gamma-g 94.4 0.05 1.1E-06 40.6 3.5 23 53-75 3-25 (343)
294 KOG0725|consensus 94.3 0.088 1.9E-06 38.2 4.4 33 50-82 6-38 (270)
295 TIGR00521 coaBC_dfp phosphopan 94.2 0.07 1.5E-06 40.9 3.9 34 50-83 183-232 (390)
296 PF04127 DFP: DNA / pantothena 93.9 0.11 2.4E-06 36.0 4.2 24 60-83 27-50 (185)
297 PRK06300 enoyl-(acyl carrier p 93.9 0.1 2.2E-06 38.3 4.1 32 50-81 6-39 (299)
298 KOG2865|consensus 93.7 0.086 1.9E-06 40.1 3.5 32 51-82 60-91 (391)
299 KOG1372|consensus 93.7 0.1 2.2E-06 39.1 3.8 32 52-83 28-59 (376)
300 KOG4039|consensus 93.5 0.086 1.9E-06 37.7 3.1 32 51-83 17-48 (238)
301 KOG1201|consensus 93.4 0.16 3.5E-06 38.0 4.5 34 47-80 33-66 (300)
302 PRK14106 murD UDP-N-acetylmura 93.3 0.13 2.9E-06 38.8 4.1 32 50-82 3-34 (450)
303 PRK14192 bifunctional 5,10-met 93.2 0.17 3.6E-06 37.3 4.3 34 50-83 157-190 (283)
304 PRK06728 aspartate-semialdehyd 93.1 0.11 2.4E-06 39.4 3.3 28 53-80 6-34 (347)
305 PRK11199 tyrA bifunctional cho 92.9 0.17 3.6E-06 38.3 4.1 31 52-82 98-128 (374)
306 KOG1208|consensus 92.7 0.17 3.7E-06 37.7 3.8 32 50-81 33-64 (314)
307 TIGR02114 coaB_strep phosphopa 92.6 0.16 3.4E-06 35.9 3.4 25 59-83 22-46 (227)
308 COG0002 ArgC Acetylglutamate s 92.6 0.2 4.3E-06 38.3 4.0 28 53-81 3-30 (349)
309 cd05294 LDH-like_MDH_nadp A la 92.4 0.24 5.2E-06 36.5 4.3 26 53-78 1-26 (309)
310 PRK06849 hypothetical protein; 92.3 0.24 5.3E-06 37.0 4.2 32 51-82 3-34 (389)
311 PRK14175 bifunctional 5,10-met 92.1 0.32 6.8E-06 36.1 4.6 34 50-83 156-189 (286)
312 COG3967 DltE Short-chain dehyd 91.9 0.28 6E-06 35.6 3.9 31 51-81 4-34 (245)
313 PRK09496 trkA potassium transp 91.7 0.29 6.2E-06 36.9 4.1 29 53-82 1-29 (453)
314 PF08659 KR: KR domain; Inter 91.5 0.42 9.2E-06 32.1 4.4 24 54-77 2-25 (181)
315 COG0136 Asd Aspartate-semialde 91.5 0.27 5.9E-06 37.3 3.7 31 53-83 2-32 (334)
316 cd01080 NAD_bind_m-THF_DH_Cycl 91.5 0.4 8.7E-06 32.7 4.2 33 50-82 42-74 (168)
317 KOG1200|consensus 91.4 0.42 9.2E-06 34.7 4.4 40 45-84 7-46 (256)
318 PF02882 THF_DHG_CYH_C: Tetrah 91.4 0.44 9.5E-06 32.5 4.3 34 50-83 34-67 (160)
319 PRK02472 murD UDP-N-acetylmura 91.4 0.32 7E-06 36.7 4.0 32 50-82 3-34 (447)
320 smart00859 Semialdhyde_dh Semi 91.3 0.38 8.1E-06 30.2 3.7 29 54-82 1-30 (122)
321 PRK06598 aspartate-semialdehyd 91.3 0.2 4.3E-06 38.4 2.8 23 53-75 2-24 (369)
322 PRK06129 3-hydroxyacyl-CoA deh 91.2 0.34 7.3E-06 35.3 3.9 29 53-82 3-31 (308)
323 PRK06718 precorrin-2 dehydroge 91.1 0.43 9.2E-06 33.2 4.2 32 50-82 8-39 (202)
324 PRK14194 bifunctional 5,10-met 91.1 0.39 8.4E-06 35.9 4.1 34 50-83 157-190 (301)
325 PRK14188 bifunctional 5,10-met 90.9 0.42 9.1E-06 35.5 4.2 34 50-83 156-189 (296)
326 PF00056 Ldh_1_N: lactate/mala 90.9 0.33 7.1E-06 31.9 3.2 24 53-76 1-24 (141)
327 TIGR01745 asd_gamma aspartate- 90.8 0.26 5.7E-06 37.7 3.1 30 53-82 1-31 (366)
328 PRK08655 prephenate dehydrogen 90.8 0.4 8.6E-06 37.0 4.1 29 53-81 1-29 (437)
329 KOG4169|consensus 90.6 0.36 7.7E-06 35.5 3.5 33 50-82 3-35 (261)
330 PF02670 DXP_reductoisom: 1-de 90.6 0.54 1.2E-05 31.1 4.1 22 55-76 1-22 (129)
331 PF01113 DapB_N: Dihydrodipico 90.3 0.54 1.2E-05 30.1 3.8 30 53-82 1-31 (124)
332 PLN02696 1-deoxy-D-xylulose-5- 90.0 0.73 1.6E-05 36.3 5.0 25 51-75 56-80 (454)
333 PRK06901 aspartate-semialdehyd 90.0 0.34 7.3E-06 36.6 3.0 30 53-83 4-33 (322)
334 cd01075 NAD_bind_Leu_Phe_Val_D 89.8 0.64 1.4E-05 32.2 4.1 30 50-80 26-55 (200)
335 PRK14189 bifunctional 5,10-met 89.5 0.67 1.4E-05 34.4 4.3 34 50-83 156-189 (285)
336 cd08259 Zn_ADH5 Alcohol dehydr 89.5 0.73 1.6E-05 32.4 4.3 31 51-81 162-192 (332)
337 cd00704 MDH Malate dehydrogena 89.2 0.41 8.9E-06 35.7 3.0 23 54-76 2-24 (323)
338 COG1748 LYS9 Saccharopine dehy 89.2 0.57 1.2E-05 36.2 3.8 27 53-80 2-29 (389)
339 PRK14179 bifunctional 5,10-met 89.1 0.63 1.4E-05 34.5 3.9 33 50-82 156-188 (284)
340 PF02737 3HCDH_N: 3-hydroxyacy 89.1 0.72 1.6E-05 31.4 3.9 28 54-82 1-28 (180)
341 cd05212 NAD_bind_m-THF_DH_Cycl 89.0 0.87 1.9E-05 30.2 4.2 34 50-83 26-59 (140)
342 COG2085 Predicted dinucleotide 88.9 0.65 1.4E-05 33.2 3.7 28 54-81 2-29 (211)
343 PRK14191 bifunctional 5,10-met 88.7 0.9 1.9E-05 33.7 4.4 34 50-83 155-188 (285)
344 PRK06444 prephenate dehydrogen 88.4 0.75 1.6E-05 32.2 3.7 28 53-80 1-28 (197)
345 KOG1207|consensus 88.4 0.73 1.6E-05 33.0 3.6 34 49-82 4-37 (245)
346 cd01337 MDH_glyoxysomal_mitoch 88.2 0.86 1.9E-05 33.9 4.1 25 53-77 1-25 (310)
347 PRK05086 malate dehydrogenase; 88.1 0.71 1.5E-05 34.1 3.6 22 53-74 1-22 (312)
348 PRK14176 bifunctional 5,10-met 87.9 1.1 2.3E-05 33.4 4.4 34 50-83 162-195 (287)
349 KOG1014|consensus 87.7 0.85 1.9E-05 34.4 3.8 30 53-82 50-79 (312)
350 PRK13656 trans-2-enoyl-CoA red 87.7 0.98 2.1E-05 35.1 4.2 31 52-83 41-73 (398)
351 PRK10792 bifunctional 5,10-met 87.6 1.2 2.7E-05 33.0 4.6 34 50-83 157-190 (285)
352 PRK14180 bifunctional 5,10-met 87.4 1.1 2.5E-05 33.2 4.2 34 50-83 156-189 (282)
353 PLN00106 malate dehydrogenase 87.2 0.79 1.7E-05 34.3 3.4 24 53-76 19-42 (323)
354 KOG4022|consensus 87.1 1.2 2.6E-05 31.6 4.1 31 53-83 4-34 (236)
355 PRK00048 dihydrodipicolinate r 86.8 1.3 2.9E-05 31.7 4.3 29 53-81 2-31 (257)
356 PRK14190 bifunctional 5,10-met 86.7 1.4 3.1E-05 32.6 4.5 34 50-83 156-189 (284)
357 PRK14186 bifunctional 5,10-met 86.6 1.2 2.7E-05 33.2 4.1 34 50-83 156-189 (297)
358 PRK12548 shikimate 5-dehydroge 86.5 1.4 3.1E-05 32.1 4.3 30 51-81 125-155 (289)
359 KOG1611|consensus 86.5 1 2.2E-05 32.9 3.5 31 52-83 3-33 (249)
360 PF13241 NAD_binding_7: Putati 86.4 0.85 1.8E-05 28.2 2.8 32 50-82 5-36 (103)
361 KOG1209|consensus 86.3 1.1 2.4E-05 33.0 3.6 30 52-81 7-37 (289)
362 COG0604 Qor NADPH:quinone redu 86.3 1.4 3.1E-05 32.6 4.4 30 52-81 143-172 (326)
363 PF03721 UDPG_MGDP_dh_N: UDP-g 86.2 1.4 3.1E-05 30.2 4.0 29 53-82 1-29 (185)
364 cd01338 MDH_choloroplast_like 86.1 0.87 1.9E-05 33.9 3.1 24 53-76 3-26 (322)
365 cd01485 E1-1_like Ubiquitin ac 86.0 1.7 3.6E-05 30.0 4.3 31 47-78 14-44 (198)
366 PRK14173 bifunctional 5,10-met 86.0 1.4 3E-05 32.7 4.1 34 50-83 153-186 (287)
367 cd08295 double_bond_reductase_ 85.9 1.5 3.2E-05 31.6 4.2 31 51-81 151-181 (338)
368 PRK14172 bifunctional 5,10-met 85.7 1.5 3.2E-05 32.5 4.1 34 50-83 156-189 (278)
369 cd01492 Aos1_SUMO Ubiquitin ac 85.4 1.8 4E-05 29.9 4.3 30 48-78 17-46 (197)
370 PTZ00325 malate dehydrogenase; 85.4 1.3 2.9E-05 33.1 3.8 26 51-76 7-32 (321)
371 cd01065 NAD_bind_Shikimate_DH 85.3 2.3 4.9E-05 27.2 4.5 30 50-80 17-47 (155)
372 PF03435 Saccharop_dh: Sacchar 85.3 0.93 2E-05 33.8 3.0 21 55-76 1-21 (386)
373 PRK14187 bifunctional 5,10-met 85.2 1.5 3.3E-05 32.7 4.0 34 50-83 158-191 (294)
374 PRK14170 bifunctional 5,10-met 85.1 1.6 3.5E-05 32.4 4.1 34 50-83 155-188 (284)
375 PRK14166 bifunctional 5,10-met 85.0 1.6 3.6E-05 32.3 4.1 34 50-83 155-188 (282)
376 PRK06719 precorrin-2 dehydroge 84.9 1.8 4E-05 28.9 4.0 32 50-82 11-42 (157)
377 PRK14183 bifunctional 5,10-met 84.9 1.6 3.5E-05 32.3 4.0 34 50-83 155-188 (281)
378 PRK06522 2-dehydropantoate 2-r 84.9 1.7 3.7E-05 30.9 4.0 29 53-82 1-29 (304)
379 PRK14177 bifunctional 5,10-met 84.7 1.7 3.7E-05 32.3 4.0 34 50-83 157-190 (284)
380 PRK14169 bifunctional 5,10-met 84.5 1.8 3.9E-05 32.1 4.1 34 50-83 154-187 (282)
381 TIGR02825 B4_12hDH leukotriene 84.5 1.9 4.2E-05 30.8 4.2 31 51-81 138-168 (325)
382 PRK07688 thiamine/molybdopteri 84.4 1.9 4E-05 32.4 4.2 30 47-77 19-48 (339)
383 PRK09496 trkA potassium transp 84.4 1.8 3.9E-05 32.6 4.1 30 52-82 231-260 (453)
384 COG0743 Dxr 1-deoxy-D-xylulose 84.3 1.8 3.9E-05 33.6 4.1 26 53-78 2-27 (385)
385 PRK01438 murD UDP-N-acetylmura 84.2 2.1 4.5E-05 32.8 4.5 32 50-82 14-45 (480)
386 TIGR01758 MDH_euk_cyt malate d 84.2 0.99 2.2E-05 33.7 2.7 23 54-76 1-23 (324)
387 cd08294 leukotriene_B4_DH_like 84.2 2.1 4.5E-05 30.3 4.2 31 51-81 143-173 (329)
388 PRK09260 3-hydroxybutyryl-CoA 84.1 1.9 4.1E-05 31.0 4.1 29 53-82 2-30 (288)
389 TIGR01759 MalateDH-SF1 malate 83.8 1.3 2.8E-05 33.1 3.2 24 53-76 4-27 (323)
390 PRK12409 D-amino acid dehydrog 83.8 1.9 4.1E-05 32.0 4.0 28 54-82 3-30 (410)
391 PF10727 Rossmann-like: Rossma 83.7 1.1 2.4E-05 29.3 2.4 31 52-83 10-40 (127)
392 PRK05442 malate dehydrogenase; 83.7 1.3 2.8E-05 33.2 3.1 25 52-76 4-28 (326)
393 PF13380 CoA_binding_2: CoA bi 83.6 2 4.3E-05 27.3 3.6 31 53-83 1-34 (116)
394 KOG1496|consensus 83.6 0.87 1.9E-05 34.0 2.1 22 53-74 5-26 (332)
395 PRK14171 bifunctional 5,10-met 83.5 2 4.3E-05 32.0 4.0 34 50-83 157-190 (288)
396 PRK00711 D-amino acid dehydrog 83.4 2 4.3E-05 31.8 4.0 28 54-82 2-29 (416)
397 PRK13982 bifunctional SbtC-lik 83.4 2.2 4.7E-05 33.8 4.4 35 49-83 253-303 (475)
398 PRK00258 aroE shikimate 5-dehy 83.4 2.2 4.8E-05 30.7 4.1 31 50-81 121-152 (278)
399 cd05295 MDH_like Malate dehydr 83.3 0.97 2.1E-05 35.6 2.4 23 52-74 123-145 (452)
400 PF01488 Shikimate_DH: Shikima 82.8 4.5 9.7E-05 26.0 5.1 29 49-78 9-37 (135)
401 PLN02516 methylenetetrahydrofo 82.6 2.4 5.1E-05 31.7 4.1 34 50-83 165-198 (299)
402 cd08293 PTGR2 Prostaglandin re 82.2 2.7 5.8E-05 30.1 4.2 29 53-81 156-185 (345)
403 PRK14182 bifunctional 5,10-met 82.1 2.6 5.6E-05 31.3 4.1 34 50-83 155-188 (282)
404 cd05191 NAD_bind_amino_acid_DH 82.1 4.4 9.5E-05 24.0 4.5 28 50-78 21-48 (86)
405 COG0190 FolD 5,10-methylene-te 82.1 2.3 5.1E-05 31.7 3.9 34 50-83 154-187 (283)
406 TIGR02813 omega_3_PfaA polyket 81.9 2.1 4.6E-05 40.0 4.2 31 51-81 1996-2027(2582)
407 cd05276 p53_inducible_oxidored 81.8 3.1 6.8E-05 28.6 4.3 31 51-81 139-169 (323)
408 TIGR00243 Dxr 1-deoxy-D-xylulo 81.8 2 4.4E-05 33.3 3.6 30 53-82 2-33 (389)
409 PRK14193 bifunctional 5,10-met 81.8 2.6 5.6E-05 31.3 4.0 34 50-83 156-191 (284)
410 TIGR01772 MDH_euk_gproteo mala 81.7 2.3 4.9E-05 31.7 3.7 24 54-77 1-24 (312)
411 COG0665 DadA Glycine/D-amino a 81.6 2.7 5.9E-05 30.5 4.1 29 53-82 5-33 (387)
412 cd05188 MDR Medium chain reduc 81.6 3.2 6.9E-05 28.0 4.2 30 51-81 134-163 (271)
413 PRK12475 thiamine/molybdopteri 81.5 3.3 7.1E-05 31.1 4.5 31 47-78 19-49 (338)
414 PRK05808 3-hydroxybutyryl-CoA 81.5 2.9 6.4E-05 29.9 4.2 29 53-82 4-32 (282)
415 PLN03154 putative allyl alcoho 81.4 2.9 6.4E-05 30.7 4.2 31 51-81 158-188 (348)
416 cd01079 NAD_bind_m-THF_DH NAD 81.4 3.4 7.3E-05 29.3 4.3 34 49-82 59-92 (197)
417 cd01076 NAD_bind_1_Glu_DH NAD( 81.4 2.9 6.3E-05 29.7 4.0 32 50-82 29-60 (227)
418 PRK07417 arogenate dehydrogena 81.2 2.6 5.7E-05 30.2 3.8 28 54-82 2-29 (279)
419 COG3268 Uncharacterized conser 81.0 1.8 3.9E-05 33.4 3.0 25 54-78 8-32 (382)
420 TIGR00507 aroE shikimate 5-deh 80.9 3.1 6.8E-05 29.7 4.1 30 51-81 116-145 (270)
421 PRK05447 1-deoxy-D-xylulose 5- 80.8 2.3 5.1E-05 32.9 3.6 30 53-82 2-33 (385)
422 cd08253 zeta_crystallin Zeta-c 80.8 3.5 7.7E-05 28.4 4.3 31 51-81 144-174 (325)
423 cd08268 MDR2 Medium chain dehy 80.2 3.6 7.9E-05 28.5 4.2 31 51-81 144-174 (328)
424 TIGR01757 Malate-DH_plant mala 80.0 2 4.3E-05 33.1 3.0 25 52-76 44-68 (387)
425 PRK11259 solA N-methyltryptoph 79.8 2.9 6.4E-05 30.4 3.7 27 55-82 6-32 (376)
426 KOG1610|consensus 79.7 2.4 5.3E-05 32.1 3.3 32 50-81 27-58 (322)
427 cd08289 MDR_yhfp_like Yhfp put 79.7 4 8.7E-05 28.8 4.3 30 52-81 147-176 (326)
428 PLN02520 bifunctional 3-dehydr 79.7 3.1 6.8E-05 33.0 4.1 31 50-81 377-407 (529)
429 PRK08818 prephenate dehydrogen 79.6 3.4 7.5E-05 31.6 4.2 30 52-81 4-34 (370)
430 PLN02897 tetrahydrofolate dehy 79.6 3.3 7.1E-05 31.7 4.0 34 50-83 212-245 (345)
431 KOG1478|consensus 79.4 2.8 6.1E-05 31.6 3.5 27 52-78 3-29 (341)
432 KOG4288|consensus 79.3 2.2 4.7E-05 31.6 2.8 29 54-82 4-32 (283)
433 PRK14168 bifunctional 5,10-met 79.2 3.3 7.2E-05 30.9 3.9 34 50-83 159-196 (297)
434 PRK08293 3-hydroxybutyryl-CoA 79.1 3.6 7.7E-05 29.6 4.0 29 53-82 4-32 (287)
435 PLN02256 arogenate dehydrogena 79.1 3.5 7.7E-05 30.4 4.0 30 51-81 35-64 (304)
436 PRK14031 glutamate dehydrogena 79.1 3.5 7.7E-05 32.4 4.2 32 50-82 226-257 (444)
437 PLN02616 tetrahydrofolate dehy 79.1 3.3 7.2E-05 31.9 3.9 34 50-83 229-262 (364)
438 TIGR02853 spore_dpaA dipicolin 78.9 3.8 8.1E-05 30.0 4.1 31 50-81 149-179 (287)
439 COG0287 TyrA Prephenate dehydr 78.9 3.5 7.5E-05 30.3 3.9 28 54-82 5-32 (279)
440 cd05211 NAD_bind_Glu_Leu_Phe_V 78.9 4.2 9.1E-05 28.7 4.2 32 50-82 21-52 (217)
441 PF03807 F420_oxidored: NADP o 78.6 5.1 0.00011 23.6 4.0 27 55-82 2-31 (96)
442 cd08250 Mgc45594_like Mgc45594 78.5 4.8 0.0001 28.5 4.4 32 51-82 139-170 (329)
443 PRK06035 3-hydroxyacyl-CoA deh 78.2 3.9 8.5E-05 29.4 4.0 29 53-82 4-32 (291)
444 TIGR02824 quinone_pig3 putativ 78.1 4.8 0.0001 27.8 4.3 31 51-81 139-169 (325)
445 PF10686 DUF2493: Protein of u 77.5 8.1 0.00018 22.8 4.6 13 52-64 3-15 (71)
446 PRK14174 bifunctional 5,10-met 77.4 5 0.00011 29.9 4.4 34 50-83 157-194 (295)
447 PRK14167 bifunctional 5,10-met 77.2 4 8.6E-05 30.5 3.8 34 50-83 155-192 (297)
448 cd08243 quinone_oxidoreductase 77.2 5.5 0.00012 27.7 4.4 32 51-82 142-173 (320)
449 PRK06223 malate dehydrogenase; 77.1 4.4 9.5E-05 29.3 4.0 24 53-77 3-26 (307)
450 PRK07530 3-hydroxybutyryl-CoA 77.0 4.8 0.0001 28.9 4.1 30 52-82 4-33 (292)
451 TIGR02354 thiF_fam2 thiamine b 76.9 5.8 0.00012 27.5 4.4 32 46-78 15-46 (200)
452 PRK14185 bifunctional 5,10-met 76.7 4.6 9.9E-05 30.2 4.0 34 50-83 155-192 (293)
453 PRK14184 bifunctional 5,10-met 76.7 4.9 0.00011 29.9 4.1 34 50-83 155-192 (286)
454 cd05288 PGDH Prostaglandin deh 76.4 5.6 0.00012 28.1 4.3 31 51-81 145-175 (329)
455 PLN02545 3-hydroxybutyryl-CoA 76.4 5.1 0.00011 28.8 4.1 29 53-82 5-33 (295)
456 PF00070 Pyr_redox: Pyridine n 76.3 6.5 0.00014 22.7 3.9 25 59-83 5-29 (80)
457 PF00208 ELFV_dehydrog: Glutam 76.2 4.5 9.7E-05 29.1 3.7 32 50-82 30-61 (244)
458 cd05289 MDR_like_2 alcohol deh 76.2 5.9 0.00013 27.1 4.3 31 51-81 144-174 (309)
459 PRK11064 wecC UDP-N-acetyl-D-m 76.2 4.7 0.0001 30.9 4.0 29 53-82 4-32 (415)
460 PRK14181 bifunctional 5,10-met 76.2 5 0.00011 29.9 4.0 34 50-83 151-188 (287)
461 TIGR03364 HpnW_proposed FAD de 75.8 4.6 9.9E-05 29.4 3.8 27 55-82 3-29 (365)
462 PRK14178 bifunctional 5,10-met 75.7 5.7 0.00012 29.4 4.2 34 50-83 150-183 (279)
463 PRK00094 gpsA NAD(P)H-dependen 75.5 5.2 0.00011 28.7 4.0 28 53-81 2-29 (325)
464 cd08292 ETR_like_2 2-enoyl thi 75.4 5.5 0.00012 28.0 4.0 31 51-81 139-169 (324)
465 PRK08229 2-dehydropantoate 2-r 75.3 5.5 0.00012 29.0 4.1 29 53-82 3-31 (341)
466 PRK06130 3-hydroxybutyryl-CoA 75.2 5.4 0.00012 28.8 4.0 29 53-82 5-33 (311)
467 cd08266 Zn_ADH_like1 Alcohol d 75.1 6.5 0.00014 27.4 4.3 31 51-81 166-196 (342)
468 PLN00112 malate dehydrogenase 74.9 4.8 0.0001 31.7 3.8 24 52-75 100-123 (444)
469 COG0163 UbiX 3-polyprenyl-4-hy 74.8 5.6 0.00012 28.1 3.8 30 54-83 6-36 (191)
470 cd08248 RTN4I1 Human Reticulon 74.6 7.3 0.00016 27.8 4.5 30 52-81 163-192 (350)
471 PF02254 TrkA_N: TrkA-N domain 74.4 6.3 0.00014 23.9 3.7 27 55-82 1-27 (116)
472 PRK07634 pyrroline-5-carboxyla 74.3 4.9 0.00011 27.8 3.5 25 51-76 3-27 (245)
473 PF00899 ThiF: ThiF family; I 74.3 8 0.00017 24.5 4.3 26 52-78 2-27 (135)
474 cd00650 LDH_MDH_like NAD-depen 74.2 4.3 9.3E-05 28.8 3.2 22 55-76 1-22 (263)
475 smart00829 PKS_ER Enoylreducta 74.1 7.4 0.00016 26.2 4.3 31 51-81 104-134 (288)
476 PRK06753 hypothetical protein; 74.1 6.1 0.00013 28.8 4.1 29 53-82 1-29 (373)
477 cd08244 MDR_enoyl_red Possible 73.8 7.3 0.00016 27.3 4.3 30 52-81 143-172 (324)
478 TIGR01470 cysG_Nterm siroheme 73.6 7 0.00015 27.2 4.1 32 50-82 7-38 (205)
479 COG0039 Mdh Malate/lactate deh 73.5 6.2 0.00013 29.7 4.0 24 53-77 1-24 (313)
480 TIGR00036 dapB dihydrodipicoli 73.3 7.1 0.00015 28.1 4.2 30 53-82 2-32 (266)
481 cd08288 MDR_yhdh Yhdh putative 73.2 7.7 0.00017 27.3 4.3 30 52-81 147-176 (324)
482 cd05313 NAD_bind_2_Glu_DH NAD( 73.0 7.2 0.00016 28.4 4.2 32 50-82 36-67 (254)
483 TIGR01377 soxA_mon sarcosine o 73.0 5.9 0.00013 28.8 3.8 27 55-82 3-29 (380)
484 PRK07236 hypothetical protein; 73.0 7 0.00015 28.9 4.2 31 51-82 5-35 (386)
485 cd08274 MDR9 Medium chain dehy 72.8 7.5 0.00016 27.7 4.2 31 51-81 177-207 (350)
486 PRK07819 3-hydroxybutyryl-CoA 72.7 6.5 0.00014 28.5 3.9 29 53-82 6-34 (286)
487 TIGR02817 adh_fam_1 zinc-bindi 72.7 7.3 0.00016 27.6 4.1 31 52-82 149-180 (336)
488 cd05292 LDH_2 A subgroup of L- 72.4 6.9 0.00015 28.7 4.0 24 53-77 1-24 (308)
489 TIGR02823 oxido_YhdH putative 72.1 8.2 0.00018 27.2 4.2 30 52-81 145-175 (323)
490 PRK06249 2-dehydropantoate 2-r 71.9 8 0.00017 28.1 4.3 30 52-82 5-34 (313)
491 PRK11749 dihydropyrimidine deh 71.9 6.5 0.00014 30.0 3.9 31 51-82 139-169 (457)
492 cd08290 ETR 2-enoyl thioester 71.9 6.7 0.00015 27.9 3.8 32 51-82 146-177 (341)
493 PRK09754 phenylpropionate diox 71.8 7.9 0.00017 28.9 4.3 31 52-83 144-174 (396)
494 PRK12921 2-dehydropantoate 2-r 71.7 8 0.00017 27.5 4.1 28 54-82 2-29 (305)
495 cd05286 QOR2 Quinone oxidoredu 71.7 8.8 0.00019 26.3 4.3 31 51-81 136-166 (320)
496 TIGR01763 MalateDH_bact malate 71.6 7.5 0.00016 28.6 4.1 27 53-80 2-29 (305)
497 PRK00066 ldh L-lactate dehydro 71.5 7.6 0.00017 28.7 4.1 25 52-77 6-30 (315)
498 PRK05690 molybdopterin biosynt 71.4 11 0.00023 27.0 4.7 30 47-77 27-56 (245)
499 PRK05476 S-adenosyl-L-homocyst 71.1 7.4 0.00016 30.4 4.1 32 50-82 210-241 (425)
500 cd08270 MDR4 Medium chain dehy 71.1 8.8 0.00019 26.7 4.2 30 52-81 133-162 (305)
No 1
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=98.75 E-value=1.2e-08 Score=80.85 Aligned_cols=56 Identities=27% Similarity=0.399 Sum_probs=49.0
Q ss_pred CcccccccccCCCCCC---ChhhhhhccceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 28 DKEDDAEDIIWDDDTP---SPIQEFYKDQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 28 ~~e~~~~~~l~~~~~~---~~~~~~~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
.+|++++|+|+|++.+ ..+..++++|+|+||||+|.|||.+++++++.+++...++
T Consensus 223 lreI~ieDLLgR~pV~~d~~~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~ 281 (588)
T COG1086 223 LREIEIEDLLGRPPVALDTELIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILF 281 (588)
T ss_pred cccCCHHHHhCCCCCCCCHHHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEe
Confidence 7899999999999776 4566778999999999999999999999999888766554
No 2
>KOG1502|consensus
Probab=98.65 E-value=2.8e-08 Score=74.37 Aligned_cols=33 Identities=33% Similarity=0.490 Sum_probs=30.0
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
.++.|+||||+||||+|++++|+++||.|+..+
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtV 37 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTV 37 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEE
Confidence 457899999999999999999999999998753
No 3
>PLN02996 fatty acyl-CoA reductase
Probab=98.63 E-value=2.9e-08 Score=76.90 Aligned_cols=40 Identities=40% Similarity=0.754 Sum_probs=36.3
Q ss_pred hhhhhhccceEEEeccCcchHHHHHHHHHHcCCceEEEEC
Q psy8179 45 PIQEFYKDQTVFITGATGFLGSLLVEKLLRCCPQMLSLRF 84 (84)
Q Consensus 45 ~~~~~~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~~ 84 (84)
.+.+++++++|+|||||||+|++++++|++.+++|.+||+
T Consensus 4 ~i~~~~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~ 43 (491)
T PLN02996 4 SCVQFLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYL 43 (491)
T ss_pred cHHHHhCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEE
Confidence 5677899999999999999999999999998899988874
No 4
>PLN02503 fatty acyl-CoA reductase 2
Probab=98.50 E-value=9.2e-08 Score=76.32 Aligned_cols=40 Identities=43% Similarity=0.747 Sum_probs=35.9
Q ss_pred hhhhhhccceEEEeccCcchHHHHHHHHHHcCCceEEEEC
Q psy8179 45 PIQEFYKDQTVFITGATGFLGSLLVEKLLRCCPQMLSLRF 84 (84)
Q Consensus 45 ~~~~~~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~~ 84 (84)
.+.+++++++|+|||||||+|++++++|++.+++|.+||+
T Consensus 112 ~I~~f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~ 151 (605)
T PLN02503 112 GIAEFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYL 151 (605)
T ss_pred chhhhhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEE
Confidence 3567789999999999999999999999998899888874
No 5
>PLN02572 UDP-sulfoquinovose synthase
Probab=98.50 E-value=1.5e-07 Score=72.00 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=33.1
Q ss_pred ChhhhhhccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 44 SPIQEFYKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 44 ~~~~~~~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+......++++|+||||+||||++++++|+++|++|..+
T Consensus 39 ~~~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~ 77 (442)
T PLN02572 39 PGSSSSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIV 77 (442)
T ss_pred CCCCccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEE
Confidence 344455677899999999999999999999999998764
No 6
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=98.48 E-value=1.6e-07 Score=68.88 Aligned_cols=33 Identities=36% Similarity=0.555 Sum_probs=29.4
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+..++|+|||||||+|++++++|+++|++|..+
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~ 45 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGL 45 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEE
Confidence 455889999999999999999999999988654
No 7
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=98.48 E-value=1.7e-07 Score=66.98 Aligned_cols=32 Identities=31% Similarity=0.480 Sum_probs=29.1
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++++|+|||||||||++++++|+++|++|+.+
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~ 34 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKAT 34 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEE
Confidence 45789999999999999999999999998754
No 8
>PLN02206 UDP-glucuronate decarboxylase
Probab=98.41 E-value=2.8e-07 Score=70.66 Aligned_cols=32 Identities=34% Similarity=0.626 Sum_probs=29.4
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++|+|+|||||||||+++++.|+++|++|..+
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~l 149 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGDSVIVV 149 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcCEEEEE
Confidence 56899999999999999999999999998764
No 9
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=98.40 E-value=3.6e-07 Score=66.72 Aligned_cols=33 Identities=33% Similarity=0.524 Sum_probs=29.8
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++|+||||+||||+++++.|+++|++|..+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~ 34 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGY 34 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEE
Confidence 567899999999999999999999999998654
No 10
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=98.39 E-value=3.7e-07 Score=64.39 Aligned_cols=29 Identities=41% Similarity=0.744 Sum_probs=27.1
Q ss_pred eEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 54 TVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 54 ~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+|+|||||||||++++++|+++||+|..+
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~~V~~~ 30 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGHDVRGL 30 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCCeEEEE
Confidence 49999999999999999999999999875
No 11
>CHL00194 ycf39 Ycf39; Provisional
Probab=98.38 E-value=3.9e-07 Score=66.00 Aligned_cols=30 Identities=33% Similarity=0.448 Sum_probs=27.8
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
|+|+|||||||+|++++++|+++|++|+.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l 30 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCL 30 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEE
Confidence 479999999999999999999999998765
No 12
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=98.37 E-value=4.3e-07 Score=69.53 Aligned_cols=31 Identities=32% Similarity=0.633 Sum_probs=28.5
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.++|+|||||||||++++++|+++|++|..+
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~l 150 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRGDEVIVI 150 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCCEEEEE
Confidence 4789999999999999999999999998764
No 13
>PLN00198 anthocyanidin reductase; Provisional
Probab=98.37 E-value=4.7e-07 Score=65.65 Aligned_cols=33 Identities=33% Similarity=0.441 Sum_probs=29.3
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++|+||||+||||++++++|+++|++|..+
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~ 39 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKGYAVNTT 39 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCCCEEEEE
Confidence 346789999999999999999999999998654
No 14
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=98.36 E-value=4.7e-07 Score=65.90 Aligned_cols=30 Identities=40% Similarity=0.416 Sum_probs=27.5
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++|+||||+||||++++++|++.|++|..+
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~ 30 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGL 30 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEE
Confidence 479999999999999999999999998754
No 15
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=98.35 E-value=6e-07 Score=64.59 Aligned_cols=32 Identities=28% Similarity=0.392 Sum_probs=29.0
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.+++|+||||+||||++++++|+++|++|..+
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~ 35 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKAT 35 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 46789999999999999999999999998754
No 16
>PLN02427 UDP-apiose/xylose synthase
Probab=98.34 E-value=5.3e-07 Score=66.75 Aligned_cols=31 Identities=42% Similarity=0.624 Sum_probs=27.2
Q ss_pred cceEEEeccCcchHHHHHHHHHHc-CCceEEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRC-CPQMLSL 82 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~-g~~V~~I 82 (84)
.|+|+|||||||||++++++|+++ +++|..+
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l 45 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTETPHKVLAL 45 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcCCCEEEEE
Confidence 367999999999999999999998 5887654
No 17
>PLN02583 cinnamoyl-CoA reductase
Probab=98.30 E-value=9.2e-07 Score=63.60 Aligned_cols=31 Identities=26% Similarity=0.438 Sum_probs=28.5
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++|+||||+||||++++++|+++||+|+.+
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~ 36 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGYTVHAA 36 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEEE
Confidence 4689999999999999999999999999765
No 18
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=98.30 E-value=8.7e-07 Score=64.30 Aligned_cols=33 Identities=33% Similarity=0.325 Sum_probs=29.5
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.++++|+||||+||||++++++|+++|++|..+
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~ 36 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKGYEVHGI 36 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEE
Confidence 456789999999999999999999999998754
No 19
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=98.29 E-value=8.5e-07 Score=65.99 Aligned_cols=32 Identities=25% Similarity=0.393 Sum_probs=29.4
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.+|+|+|||||||||+++++.|.++|++|..+
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v 51 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIAS 51 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEE
Confidence 45889999999999999999999999998765
No 20
>PLN02650 dihydroflavonol-4-reductase
Probab=98.28 E-value=8.9e-07 Score=64.62 Aligned_cols=31 Identities=42% Similarity=0.606 Sum_probs=28.1
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.++|+||||+||||++++++|+++|++|..+
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~ 35 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGYTVRAT 35 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCCEEEEE
Confidence 4689999999999999999999999998754
No 21
>PLN02778 3,5-epimerase/4-reductase
Probab=98.28 E-value=7.6e-07 Score=64.50 Aligned_cols=29 Identities=24% Similarity=0.302 Sum_probs=26.8
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQML 80 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~ 80 (84)
.|+|+||||+||||++++++|+++|++|.
T Consensus 9 ~~kiLVtG~tGfiG~~l~~~L~~~g~~V~ 37 (298)
T PLN02778 9 TLKFLIYGKTGWIGGLLGKLCQEQGIDFH 37 (298)
T ss_pred CCeEEEECCCCHHHHHHHHHHHhCCCEEE
Confidence 36899999999999999999999999885
No 22
>KOG1221|consensus
Probab=98.27 E-value=8.4e-07 Score=69.19 Aligned_cols=39 Identities=54% Similarity=1.008 Sum_probs=36.6
Q ss_pred hhhhhccceEEEeccCcchHHHHHHHHHHcCCceEEEEC
Q psy8179 46 IQEFYKDQTVFITGATGFLGSLLVEKLLRCCPQMLSLRF 84 (84)
Q Consensus 46 ~~~~~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~~ 84 (84)
..+++.+++|+|||||||+|..++++|++..++|..||+
T Consensus 6 i~~f~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYl 44 (467)
T KOG1221|consen 6 IVQFYKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYL 44 (467)
T ss_pred HHHHhCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEE
Confidence 667899999999999999999999999999899999985
No 23
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=98.26 E-value=1.1e-06 Score=70.02 Aligned_cols=37 Identities=32% Similarity=0.494 Sum_probs=31.8
Q ss_pred hhhhhccceEEEeccCcchHHHHHHHHHHc-CCceEEE
Q psy8179 46 IQEFYKDQTVFITGATGFLGSLLVEKLLRC-CPQMLSL 82 (84)
Q Consensus 46 ~~~~~~~~~vlitGatGfiG~~l~~~ll~~-g~~V~~I 82 (84)
...++++++|+|||||||||++++++|+++ ||+|+.+
T Consensus 309 ~~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l 346 (660)
T PRK08125 309 ACSAKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGL 346 (660)
T ss_pred hhhhhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEE
Confidence 345567899999999999999999999985 6898765
No 24
>PLN02214 cinnamoyl-CoA reductase
Probab=98.26 E-value=1.2e-06 Score=64.29 Aligned_cols=32 Identities=31% Similarity=0.431 Sum_probs=29.0
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++++|+||||+||||++++++|+++|++|+.+
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~ 40 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGYTVKGT 40 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEE
Confidence 45789999999999999999999999998764
No 25
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=98.25 E-value=1.1e-06 Score=62.73 Aligned_cols=28 Identities=29% Similarity=0.470 Sum_probs=25.4
Q ss_pred EEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 55 VFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 55 vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
|+||||+||||++++++|+++|+++..+
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~ 29 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILV 29 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEE
Confidence 8999999999999999999999876654
No 26
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=98.24 E-value=1.4e-06 Score=63.74 Aligned_cols=31 Identities=39% Similarity=0.512 Sum_probs=28.3
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++|+||||+||||++++++|+++|++|..+
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~ 40 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRGYTVHAT 40 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 4689999999999999999999999998764
No 27
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.24 E-value=1.2e-06 Score=65.52 Aligned_cols=30 Identities=33% Similarity=0.649 Sum_probs=27.8
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++|+||||+||||||.+.+|++.|++|..+
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~ 30 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVL 30 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeEEEE
Confidence 479999999999999999999999998765
No 28
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=98.23 E-value=1.3e-06 Score=63.64 Aligned_cols=30 Identities=27% Similarity=0.553 Sum_probs=26.5
Q ss_pred ceEEEeccCcchHHHHHHHHHHc-CCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRC-CPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~-g~~V~~I 82 (84)
|+|+|||||||+|++++++|++. |++|..+
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~ 32 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGM 32 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEE
Confidence 57999999999999999999986 6888764
No 29
>PLN02686 cinnamoyl-CoA reductase
Probab=98.23 E-value=1.5e-06 Score=64.63 Aligned_cols=35 Identities=29% Similarity=0.372 Sum_probs=30.9
Q ss_pred hhhccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 48 EFYKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 48 ~~~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
..+++++|+||||+||||++++++|+++|++|..+
T Consensus 49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~ 83 (367)
T PLN02686 49 ADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIA 83 (367)
T ss_pred cCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEE
Confidence 34567899999999999999999999999998754
No 30
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=98.21 E-value=1.8e-06 Score=62.04 Aligned_cols=31 Identities=29% Similarity=0.419 Sum_probs=28.2
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++||||+||||++++++|+++|++|..+
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~ 35 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGYTINAT 35 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEE
Confidence 5789999999999999999999999998654
No 31
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=98.19 E-value=1.6e-06 Score=62.46 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=24.9
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
|+|+||||+||||++++++|+++| +|..
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~ 28 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLIA 28 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEEE
Confidence 479999999999999999999988 6654
No 32
>KOG1429|consensus
Probab=98.19 E-value=1.7e-06 Score=64.70 Aligned_cols=32 Identities=38% Similarity=0.724 Sum_probs=29.0
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.+++|+||||.|||||||+++|+..|+.|..+
T Consensus 26 ~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~ 57 (350)
T KOG1429|consen 26 QNLRILITGGAGFIGSHLVDKLMTEGHEVIAL 57 (350)
T ss_pred CCcEEEEecCcchHHHHHHHHHHhcCCeEEEE
Confidence 34899999999999999999999999998764
No 33
>PLN02240 UDP-glucose 4-epimerase
Probab=98.19 E-value=2.2e-06 Score=62.09 Aligned_cols=33 Identities=27% Similarity=0.518 Sum_probs=29.4
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++|+|||||||+|++++++|+++|++|..+
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~ 35 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVI 35 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 446789999999999999999999999988764
No 34
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=98.18 E-value=2.4e-06 Score=58.00 Aligned_cols=28 Identities=50% Similarity=0.837 Sum_probs=25.8
Q ss_pred EEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 55 VFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 55 vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
|+|||||||+|++++++|+++|+.|..+
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~ 28 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVL 28 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEE
T ss_pred EEEEccCCHHHHHHHHHHHHcCCccccc
Confidence 7899999999999999999999997654
No 35
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=98.14 E-value=3.1e-06 Score=61.57 Aligned_cols=29 Identities=31% Similarity=0.626 Sum_probs=26.2
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
++|+|||||||||+++++.|+++|+++..
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~ 30 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVV 30 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEE
Confidence 57999999999999999999999988653
No 36
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=98.13 E-value=3.1e-06 Score=60.98 Aligned_cols=30 Identities=30% Similarity=0.547 Sum_probs=27.3
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
|+++||||+||||++++++|+++|++|..+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~ 30 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVIL 30 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEEEE
Confidence 479999999999999999999999998754
No 37
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=98.12 E-value=3.3e-06 Score=58.52 Aligned_cols=30 Identities=33% Similarity=0.583 Sum_probs=27.6
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++|+|||||||+|++++++|+++|++|+.+
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~ 30 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAA 30 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEEEE
Confidence 469999999999999999999999998765
No 38
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=98.11 E-value=2.8e-06 Score=59.46 Aligned_cols=28 Identities=36% Similarity=0.649 Sum_probs=26.0
Q ss_pred EEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 55 VFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 55 vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
|+|||||||||+++++.|+++|++|..+
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~ 28 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTIL 28 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEE
Confidence 6899999999999999999999998765
No 39
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=98.10 E-value=3.3e-06 Score=66.91 Aligned_cols=33 Identities=30% Similarity=0.608 Sum_probs=28.0
Q ss_pred hhccceEEEeccCcchHHHHHHHHHHc--CCceEE
Q psy8179 49 FYKDQTVFITGATGFLGSLLVEKLLRC--CPQMLS 81 (84)
Q Consensus 49 ~~~~~~vlitGatGfiG~~l~~~ll~~--g~~V~~ 81 (84)
+++.++|+|||||||||++++++|+++ +++|..
T Consensus 3 ~~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~ 37 (668)
T PLN02260 3 TYEPKNILITGAAGFIASHVANRLIRNYPDYKIVV 37 (668)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEE
Confidence 467789999999999999999999998 455543
No 40
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=98.03 E-value=5.2e-06 Score=58.41 Aligned_cols=29 Identities=38% Similarity=0.520 Sum_probs=26.5
Q ss_pred eEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 54 TVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 54 ~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+|+|||||||+|++++++|+++|++|..+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~ 29 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVAL 29 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEe
Confidence 48999999999999999999999998754
No 41
>KOG1371|consensus
Probab=98.03 E-value=5.5e-06 Score=62.40 Aligned_cols=31 Identities=29% Similarity=0.497 Sum_probs=28.9
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.++|+||||+||||+|.+-+|+++||+|..|
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~v 32 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIV 32 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCCcEEEE
Confidence 4689999999999999999999999999876
No 42
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=98.02 E-value=7.1e-06 Score=59.60 Aligned_cols=27 Identities=26% Similarity=0.625 Sum_probs=24.5
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCce
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQM 79 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V 79 (84)
++|+|||||||||++++++|+++|+++
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~ 27 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDS 27 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCe
Confidence 469999999999999999999998764
No 43
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=98.01 E-value=7.1e-06 Score=59.82 Aligned_cols=32 Identities=25% Similarity=0.647 Sum_probs=27.2
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcC--CceEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCC--PQMLS 81 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g--~~V~~ 81 (84)
+.+++++||||+||||++++++|+++| ++|..
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~ 35 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIII 35 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEE
Confidence 456889999999999999999999986 45543
No 44
>PRK09135 pteridine reductase; Provisional
Probab=98.00 E-value=9.3e-06 Score=55.49 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=28.6
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.+++++||||+||+|++++++|+++|++|..+
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~ 36 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGYRVAIH 36 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 45789999999999999999999999988654
No 45
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=97.99 E-value=7.4e-06 Score=58.03 Aligned_cols=29 Identities=28% Similarity=0.346 Sum_probs=26.6
Q ss_pred eEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 54 TVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 54 ~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+|+||||||++|++++++|+++|++|+.+
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~ 29 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVA 29 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEE
Confidence 48999999999999999999999998764
No 46
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=97.98 E-value=8.5e-06 Score=61.32 Aligned_cols=33 Identities=36% Similarity=0.667 Sum_probs=29.6
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
..+++|+|||||||||+++++.|+++|++|+.+
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l 90 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGYNVVAV 90 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 456889999999999999999999999998754
No 47
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=97.98 E-value=1e-05 Score=55.71 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=29.3
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|++|++++++|+++|++|..+
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~ 34 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIA 34 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEE
Confidence 346789999999999999999999999988654
No 48
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=97.98 E-value=1.1e-05 Score=54.84 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=29.1
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++++|||++|++|++++++|+++|++|..+
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~ 35 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGANVVIN 35 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 356789999999999999999999999988544
No 49
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=97.98 E-value=8.9e-06 Score=57.78 Aligned_cols=30 Identities=43% Similarity=0.619 Sum_probs=27.3
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++++||||+||+|+++++.|+++|++|..+
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~ 30 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVL 30 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEE
Confidence 469999999999999999999999988765
No 50
>PLN00016 RNA-binding protein; Provisional
Probab=97.96 E-value=9.7e-06 Score=60.17 Aligned_cols=33 Identities=21% Similarity=0.483 Sum_probs=29.4
Q ss_pred ccceEEEe----ccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 51 KDQTVFIT----GATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 51 ~~~~vlit----GatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
..++|+|| |||||+|+++++.|+++||+|+.+.
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~ 87 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFT 87 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEe
Confidence 34689999 9999999999999999999998763
No 51
>PRK07806 short chain dehydrogenase; Provisional
Probab=97.96 E-value=1.3e-05 Score=55.16 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=29.2
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+||||++++++|+++|++|..+
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~ 36 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVN 36 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEE
Confidence 456789999999999999999999999988654
No 52
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=97.96 E-value=1.2e-05 Score=55.00 Aligned_cols=33 Identities=15% Similarity=0.303 Sum_probs=29.3
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|++|++++++|+++|++|..+
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~ 36 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVV 36 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEE
Confidence 456789999999999999999999999987654
No 53
>PRK12320 hypothetical protein; Provisional
Probab=97.96 E-value=8.8e-06 Score=66.12 Aligned_cols=30 Identities=20% Similarity=0.391 Sum_probs=27.5
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
|+|+||||+||||++++++|+++|++|+.+
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~l 30 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGHTVSGI 30 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEE
Confidence 479999999999999999999999998765
No 54
>PRK06194 hypothetical protein; Provisional
Probab=97.95 E-value=1.1e-05 Score=56.78 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=29.0
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++++||||+|+||++++++|+++|++|..+
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~ 36 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGMKLVLA 36 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEE
Confidence 346789999999999999999999999987644
No 55
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.94 E-value=1.2e-05 Score=53.27 Aligned_cols=28 Identities=39% Similarity=0.707 Sum_probs=26.2
Q ss_pred EEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 55 VFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 55 vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
|+|+||||++|+.++++|+++|++|+.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~ 28 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTAL 28 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEE
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 7899999999999999999999998765
No 56
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=97.93 E-value=1.4e-05 Score=55.89 Aligned_cols=33 Identities=39% Similarity=0.449 Sum_probs=29.0
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
...++|+||||+|++|+.++++|+++|++|+.+
T Consensus 15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~ 47 (251)
T PLN00141 15 VKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAG 47 (251)
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEE
Confidence 345789999999999999999999999998653
No 57
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.92 E-value=1.6e-05 Score=53.99 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=27.8
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
..++++||||+|++|++++++|+++|++|..
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g~~v~~ 35 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAGADVVV 35 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEE
Confidence 4578999999999999999999999998744
No 58
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=97.92 E-value=6.7e-06 Score=59.55 Aligned_cols=26 Identities=38% Similarity=0.641 Sum_probs=23.0
Q ss_pred EEeccCcchHHHHHHHHHHcC--CceEE
Q psy8179 56 FITGATGFLGSLLVEKLLRCC--PQMLS 81 (84)
Q Consensus 56 litGatGfiG~~l~~~ll~~g--~~V~~ 81 (84)
+||||+||+|++++++|+++| ++|+.
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~ 28 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRV 28 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEE
Confidence 599999999999999999999 56654
No 59
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=97.92 E-value=1.6e-05 Score=54.89 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=29.4
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++++||||+|++|+++++.|+++|++|..+
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~ 37 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIA 37 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEE
Confidence 456889999999999999999999999988654
No 60
>PRK12829 short chain dehydrogenase; Provisional
Probab=97.91 E-value=1.8e-05 Score=54.71 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=30.3
Q ss_pred hhccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 49 FYKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 49 ~~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.+++++++||||+|++|++++++|+++|++|..+
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~ 41 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVC 41 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEE
Confidence 3567899999999999999999999999988654
No 61
>PRK05717 oxidoreductase; Validated
Probab=97.91 E-value=1.6e-05 Score=55.27 Aligned_cols=34 Identities=18% Similarity=0.075 Sum_probs=30.1
Q ss_pred hhccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 49 FYKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 49 ~~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.+.+++++||||+|+||++++++|+++|++|..+
T Consensus 7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~ 40 (255)
T PRK05717 7 GHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLA 40 (255)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEE
Confidence 3567899999999999999999999999987654
No 62
>PRK07201 short chain dehydrogenase; Provisional
Probab=97.90 E-value=1.2e-05 Score=62.89 Aligned_cols=30 Identities=43% Similarity=0.681 Sum_probs=26.2
Q ss_pred ceEEEeccCcchHHHHHHHHH--HcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLL--RCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll--~~g~~V~~I 82 (84)
|+|+|||||||||++++++|+ ..+++|..+
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l 32 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVL 32 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEE
Confidence 479999999999999999999 477887655
No 63
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=97.90 E-value=1.2e-05 Score=57.44 Aligned_cols=29 Identities=55% Similarity=0.934 Sum_probs=24.6
Q ss_pred eEEEeccCcchHHHHHHHHHHcCC--ceEEE
Q psy8179 54 TVFITGATGFLGSLLVEKLLRCCP--QMLSL 82 (84)
Q Consensus 54 ~vlitGatGfiG~~l~~~ll~~g~--~V~~I 82 (84)
+|+|||||||+|++++++|+++|+ +|..+
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l 31 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICL 31 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEE
Confidence 489999999999999999999984 45543
No 64
>PRK07890 short chain dehydrogenase; Provisional
Probab=97.89 E-value=2e-05 Score=54.40 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=29.4
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|+||++++++|+++|++|..+
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~ 35 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLA 35 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEE
Confidence 456889999999999999999999999988654
No 65
>PRK12828 short chain dehydrogenase; Provisional
Probab=97.89 E-value=1.9e-05 Score=53.50 Aligned_cols=33 Identities=24% Similarity=0.228 Sum_probs=29.3
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++++||||+|++|++++++|+++|++|..+
T Consensus 5 ~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~ 37 (239)
T PRK12828 5 LQGKVVAITGGFGGLGRATAAWLAARGARVALI 37 (239)
T ss_pred CCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEE
Confidence 356899999999999999999999999987654
No 66
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.89 E-value=1.9e-05 Score=54.09 Aligned_cols=33 Identities=12% Similarity=0.249 Sum_probs=29.2
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|++|++++++|+++|++|..+
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~ 35 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVT 35 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 456789999999999999999999999987654
No 67
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=97.88 E-value=2e-05 Score=53.48 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=28.6
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|++|++++++|.++|++|..+
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~ 35 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIY 35 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 345789999999999999999999999987543
No 68
>PRK07774 short chain dehydrogenase; Provisional
Probab=97.87 E-value=2.1e-05 Score=54.10 Aligned_cols=33 Identities=27% Similarity=0.460 Sum_probs=29.4
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|++|++++++|+++|++|..+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~ 36 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGASVVVA 36 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 356889999999999999999999999988654
No 69
>PRK12746 short chain dehydrogenase; Provisional
Probab=97.87 E-value=2e-05 Score=54.48 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=28.4
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
+.+++++||||+|+||++++++|+++|++|..
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~G~~v~i 35 (254)
T PRK12746 4 LDGKVALVTGASRGIGRAIAMRLANDGALVAI 35 (254)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEE
Confidence 34578999999999999999999999998754
No 70
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=97.87 E-value=2.1e-05 Score=53.95 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=28.6
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.+++++||||+|++|++++++|+++|++|..+
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~ 33 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVF 33 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEe
Confidence 46789999999999999999999999987654
No 71
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=97.85 E-value=1.1e-05 Score=57.07 Aligned_cols=27 Identities=37% Similarity=0.522 Sum_probs=24.1
Q ss_pred EEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 56 FITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 56 litGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+|||||||||+++++.|++.|++|..+
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~~v~~~ 27 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGFTNLVL 27 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCCcEEEe
Confidence 589999999999999999999887543
No 72
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=97.85 E-value=2.6e-05 Score=54.14 Aligned_cols=33 Identities=18% Similarity=0.296 Sum_probs=29.6
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|++|+.++++|+++|++|..+
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~ 40 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAGAEVILN 40 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcCCEEEEE
Confidence 457899999999999999999999999988654
No 73
>PRK12827 short chain dehydrogenase; Provisional
Probab=97.84 E-value=2.7e-05 Score=53.22 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=29.0
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++++||||+|+||+++++.|+++|++|..+
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~ 36 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGADVIVL 36 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEE
Confidence 346789999999999999999999999988653
No 74
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=97.84 E-value=2.5e-05 Score=54.19 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=29.5
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|+||++++++|+++|++|..+
T Consensus 6 ~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~ 38 (260)
T PRK12823 6 FAGKVVVVTGAAQGIGRGVALRAAAEGARVVLV 38 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 557899999999999999999999999987654
No 75
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=97.84 E-value=2.6e-05 Score=53.72 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=29.5
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++++||||+|+||++++++|+++|++|..+
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~ 35 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGA 35 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 467899999999999999999999999987654
No 76
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=97.84 E-value=1.5e-05 Score=59.06 Aligned_cols=28 Identities=36% Similarity=0.585 Sum_probs=26.1
Q ss_pred EEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 55 VFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 55 vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
|+|||||||||++++..|.+.||+|..+
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh~v~il 28 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGHQVTIL 28 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCCeEEEE
Confidence 5899999999999999999999999775
No 77
>PRK09186 flagellin modification protein A; Provisional
Probab=97.83 E-value=2.6e-05 Score=53.83 Aligned_cols=33 Identities=36% Similarity=0.612 Sum_probs=29.4
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++++||||+|+||+++++.|.++|++|..+
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~ 34 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAA 34 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 457899999999999999999999999987654
No 78
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.83 E-value=2.8e-05 Score=53.39 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=28.0
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
.+++++||||+||||++++++|+++|++|..
T Consensus 5 ~~~~vlitGasg~iG~~l~~~l~~~g~~v~~ 35 (252)
T PRK06077 5 KDKVVVVTGSGRGIGRAIAVRLAKEGSLVVV 35 (252)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHCCCEEEE
Confidence 4578999999999999999999999998754
No 79
>PRK06914 short chain dehydrogenase; Provisional
Probab=97.83 E-value=2.6e-05 Score=54.77 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=28.5
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.+++++||||+|++|+++++.|+++|++|..+
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~ 33 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIAT 33 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEE
Confidence 35679999999999999999999999988654
No 80
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=97.83 E-value=2.5e-05 Score=53.65 Aligned_cols=30 Identities=20% Similarity=0.262 Sum_probs=27.3
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++++||||+|++|++++++|+++|++|..+
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~~v~~~ 31 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGANVVVN 31 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCCEEEEE
Confidence 579999999999999999999999987654
No 81
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=97.82 E-value=1.7e-05 Score=56.25 Aligned_cols=27 Identities=37% Similarity=0.603 Sum_probs=23.9
Q ss_pred EEEeccCcchHHHHHHHHHHcCC-ceEE
Q psy8179 55 VFITGATGFLGSLLVEKLLRCCP-QMLS 81 (84)
Q Consensus 55 vlitGatGfiG~~l~~~ll~~g~-~V~~ 81 (84)
|+|||||||+|++++++|.++|+ +|..
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~ 28 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILV 28 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEE
Confidence 68999999999999999999997 4543
No 82
>PRK06482 short chain dehydrogenase; Provisional
Probab=97.82 E-value=2.8e-05 Score=54.60 Aligned_cols=30 Identities=33% Similarity=0.422 Sum_probs=27.3
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++++||||+||||++++++|+++|++|..+
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~ 32 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVAAT 32 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEE
Confidence 679999999999999999999999987654
No 83
>PRK06057 short chain dehydrogenase; Provisional
Probab=97.81 E-value=3.1e-05 Score=53.84 Aligned_cols=33 Identities=15% Similarity=0.129 Sum_probs=29.9
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|+||++++++|+++|++|..+
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~ 37 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVG 37 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEE
Confidence 567899999999999999999999999988654
No 84
>PRK06180 short chain dehydrogenase; Provisional
Probab=97.80 E-value=3e-05 Score=54.82 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=28.5
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.+++++||||+|+||++++++|+++|++|..+
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~ 34 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGT 34 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcCEEEEE
Confidence 35789999999999999999999999988654
No 85
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.79 E-value=3.5e-05 Score=53.00 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=28.5
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++++++||||+|+||++++++|+++|++|..+
T Consensus 4 ~~k~ilItGas~gIG~~la~~l~~~G~~vv~~ 35 (253)
T PRK08642 4 SEQTVLVTGGSRGLGAAIARAFAREGARVVVN 35 (253)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEE
Confidence 45789999999999999999999999988643
No 86
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=97.79 E-value=2.5e-05 Score=55.04 Aligned_cols=28 Identities=29% Similarity=0.623 Sum_probs=24.1
Q ss_pred eEEEeccCcchHHHHHHHHHHcC--CceEE
Q psy8179 54 TVFITGATGFLGSLLVEKLLRCC--PQMLS 81 (84)
Q Consensus 54 ~vlitGatGfiG~~l~~~ll~~g--~~V~~ 81 (84)
+|+|||||||+|++++++|++++ ++|..
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~ 30 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIV 30 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEE
Confidence 48999999999999999999987 45543
No 87
>PRK05875 short chain dehydrogenase; Provisional
Probab=97.79 E-value=3.6e-05 Score=53.96 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=29.6
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++|||++|+||+++++.|+++|++|..+
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~ 37 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIV 37 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEE
Confidence 456899999999999999999999999987654
No 88
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=97.79 E-value=3.7e-05 Score=52.90 Aligned_cols=32 Identities=13% Similarity=0.177 Sum_probs=28.5
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.+++++||||+|+||++++++|+++|++|..+
T Consensus 3 ~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~ 34 (250)
T PRK08063 3 SGKVALVTGSSRGIGKAIALRLAEEGYDIAVN 34 (250)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 45789999999999999999999999987643
No 89
>PRK06179 short chain dehydrogenase; Provisional
Probab=97.78 E-value=3.4e-05 Score=53.91 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=28.3
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++.++||||+|+||++++++|.++|++|..+
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~ 34 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGYRVFGT 34 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE
Confidence 35689999999999999999999999987653
No 90
>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila. A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.
Probab=97.77 E-value=2.5e-05 Score=54.99 Aligned_cols=23 Identities=65% Similarity=1.002 Sum_probs=19.4
Q ss_pred EeccCcchHHHHHHHHHHcCCce
Q psy8179 57 ITGATGFLGSLLVEKLLRCCPQM 79 (84)
Q Consensus 57 itGatGfiG~~l~~~ll~~g~~V 79 (84)
|||||||+|++++.+|+++++.+
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~ 23 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDV 23 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TT
T ss_pred CcCCCcHHHHHHHHHHHcCCCCc
Confidence 79999999999999999997755
No 91
>PRK08263 short chain dehydrogenase; Provisional
Probab=97.77 E-value=4.1e-05 Score=53.97 Aligned_cols=32 Identities=25% Similarity=0.321 Sum_probs=28.4
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.+++++||||+|++|++++++|+++|++|..+
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~ 33 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGDRVVAT 33 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence 35789999999999999999999999987654
No 92
>PRK06128 oxidoreductase; Provisional
Probab=97.76 E-value=4.5e-05 Score=54.73 Aligned_cols=34 Identities=18% Similarity=0.157 Sum_probs=30.2
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
+.+++++||||+|+||++++++|++.|++|..++
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~ 86 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGADIALNY 86 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEe
Confidence 4568999999999999999999999999987554
No 93
>PRK07814 short chain dehydrogenase; Provisional
Probab=97.76 E-value=4.5e-05 Score=53.44 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=29.5
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++++||||+|+||++++++|+++|++|..+
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~ 40 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGADVLIA 40 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 457899999999999999999999999988654
No 94
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=97.75 E-value=4.5e-05 Score=53.01 Aligned_cols=33 Identities=21% Similarity=0.272 Sum_probs=29.2
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|+||++++++|+++|++|..+
T Consensus 10 ~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~ 42 (259)
T PRK08213 10 LSGKTALVTGGSRGLGLQIAEALGEAGARVVLS 42 (259)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCCEEEEE
Confidence 356899999999999999999999999987544
No 95
>PRK06138 short chain dehydrogenase; Provisional
Probab=97.75 E-value=4.3e-05 Score=52.50 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=29.1
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|++|++++++|+++|++|..+
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~ 35 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVA 35 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEe
Confidence 356889999999999999999999999887654
No 96
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=97.75 E-value=4.4e-05 Score=53.00 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=29.2
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|+||+++++.|+++|++|..+
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~ 36 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIA 36 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE
Confidence 346789999999999999999999999987654
No 97
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=97.74 E-value=4.9e-05 Score=52.34 Aligned_cols=33 Identities=18% Similarity=0.421 Sum_probs=29.6
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|++|+.++++|+++|++|..+
T Consensus 6 ~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~ 38 (252)
T PRK08220 6 FSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGF 38 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 456889999999999999999999999988665
No 98
>PRK08264 short chain dehydrogenase; Validated
Probab=97.74 E-value=4.8e-05 Score=52.07 Aligned_cols=33 Identities=30% Similarity=0.439 Sum_probs=28.7
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCC-ceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCP-QMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~-~V~~I 82 (84)
+.+++++||||+|++|++++++|+++|+ +|..+
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~ 37 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAA 37 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEE
Confidence 3467899999999999999999999998 76544
No 99
>PRK06197 short chain dehydrogenase; Provisional
Probab=97.74 E-value=4.3e-05 Score=54.80 Aligned_cols=33 Identities=18% Similarity=0.126 Sum_probs=29.4
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|+||++++++|+++|++|..+
T Consensus 14 ~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~ 46 (306)
T PRK06197 14 QSGRVAVVTGANTGLGYETAAALAAKGAHVVLA 46 (306)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEE
Confidence 467899999999999999999999999987654
No 100
>PRK07326 short chain dehydrogenase; Provisional
Probab=97.74 E-value=5e-05 Score=51.85 Aligned_cols=32 Identities=25% Similarity=0.265 Sum_probs=28.4
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.+++++||||+|++|++++++|+++|++|..+
T Consensus 5 ~~~~ilItGatg~iG~~la~~l~~~g~~V~~~ 36 (237)
T PRK07326 5 KGKVALITGGSKGIGFAIAEALLAEGYKVAIT 36 (237)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEe
Confidence 35789999999999999999999999987654
No 101
>PRK12937 short chain dehydrogenase; Provisional
Probab=97.73 E-value=4.8e-05 Score=52.07 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=29.1
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.++++++||||+|+||+++++.|.++|++|..+
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~ 35 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVN 35 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEe
Confidence 356889999999999999999999999987644
No 102
>PRK12747 short chain dehydrogenase; Provisional
Probab=97.72 E-value=5.1e-05 Score=52.57 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=29.2
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.++.++||||+|+||++++++|.+.|++|...
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~ 34 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLANDGALVAIH 34 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEE
Confidence 356899999999999999999999999987653
No 103
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=97.72 E-value=5.4e-05 Score=52.91 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=29.6
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|+||++++++|+++|++|..+
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~ 35 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVL 35 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 356899999999999999999999999998654
No 104
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=97.72 E-value=3.8e-05 Score=54.22 Aligned_cols=29 Identities=31% Similarity=0.660 Sum_probs=26.1
Q ss_pred eEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 54 TVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 54 ~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+|+||||+||+|++++++|+++|++|..+
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~ 29 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVVVL 29 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEEEE
Confidence 48999999999999999999999988643
No 105
>PRK09291 short chain dehydrogenase; Provisional
Probab=97.72 E-value=4.9e-05 Score=52.45 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=27.6
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++||||+|+||++++++|++.|++|..+
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~ 32 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAG 32 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 3579999999999999999999999988653
No 106
>PRK06500 short chain dehydrogenase; Provisional
Probab=97.72 E-value=5.2e-05 Score=51.99 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=28.8
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|++|++++++|+++|++|..+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~ 36 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGARVAIT 36 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEe
Confidence 346789999999999999999999999887543
No 107
>PRK06523 short chain dehydrogenase; Provisional
Probab=97.72 E-value=5.7e-05 Score=52.42 Aligned_cols=33 Identities=21% Similarity=0.389 Sum_probs=29.8
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++++||||+|.||++++++|.++|++|..+
T Consensus 7 ~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~ 39 (260)
T PRK06523 7 LAGKRALVTGGTKGIGAATVARLLEAGARVVTT 39 (260)
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHCCCEEEEE
Confidence 567899999999999999999999999987654
No 108
>PRK08226 short chain dehydrogenase; Provisional
Probab=97.71 E-value=5.2e-05 Score=52.71 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=29.4
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|+||++++++|+++|++|..+
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~ 36 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGANLILL 36 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEe
Confidence 456889999999999999999999999987654
No 109
>PRK08703 short chain dehydrogenase; Provisional
Probab=97.71 E-value=5.7e-05 Score=51.91 Aligned_cols=33 Identities=21% Similarity=0.373 Sum_probs=29.3
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++++||||+|++|++++++|+++|++|..+
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~ 36 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAGATVILV 36 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEE
Confidence 456899999999999999999999999987644
No 110
>PRK07577 short chain dehydrogenase; Provisional
Probab=97.71 E-value=5.7e-05 Score=51.45 Aligned_cols=32 Identities=31% Similarity=0.403 Sum_probs=28.5
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.+++++||||+|++|++++++|+++|++|..+
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~ 33 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGI 33 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEE
Confidence 35789999999999999999999999988654
No 111
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=97.70 E-value=5.9e-05 Score=52.09 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=30.1
Q ss_pred hhccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 49 FYKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 49 ~~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
...+++++|||++|++|.+++++|++.|++|..+
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~ 42 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGATVILL 42 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEE
Confidence 4567899999999999999999999999988654
No 112
>PRK09072 short chain dehydrogenase; Provisional
Probab=97.70 E-value=5.6e-05 Score=52.74 Aligned_cols=32 Identities=38% Similarity=0.589 Sum_probs=28.9
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++++++||||+|++|++++++|+++|++|..+
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~ 35 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGARLLLV 35 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 46789999999999999999999999988654
No 113
>PRK06841 short chain dehydrogenase; Provisional
Probab=97.70 E-value=6.2e-05 Score=51.98 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=29.5
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++++||||+|+||++++++|+++|++|..+
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~ 45 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKGARVALL 45 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 467899999999999999999999999987644
No 114
>PRK12742 oxidoreductase; Provisional
Probab=97.70 E-value=5.7e-05 Score=51.54 Aligned_cols=33 Identities=12% Similarity=0.302 Sum_probs=29.0
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|+||++++++|.++|++|..+
T Consensus 4 ~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~ 36 (237)
T PRK12742 4 FTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFT 36 (237)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEe
Confidence 456889999999999999999999999987643
No 115
>PRK06949 short chain dehydrogenase; Provisional
Probab=97.70 E-value=6e-05 Score=52.06 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=29.4
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|+||++++++|.++|++|..+
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~ 39 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGAKVVLA 39 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 556899999999999999999999999887654
No 116
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.70 E-value=5.3e-05 Score=52.27 Aligned_cols=30 Identities=13% Similarity=0.098 Sum_probs=27.2
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.++||||+|+||++++++|+++|++|..+
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~~vi~~ 32 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGFDLAIN 32 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 579999999999999999999999987654
No 117
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.69 E-value=5.9e-05 Score=51.43 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=29.0
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|++|++++++|++.|++|..+
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~ 35 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAKVVIA 35 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 345789999999999999999999999987654
No 118
>PRK08628 short chain dehydrogenase; Provisional
Probab=97.69 E-value=6.3e-05 Score=52.15 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=29.5
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.++.++||||+|.+|++++++|+++|++|..+
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G~~v~~~ 37 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEGAIPVIF 37 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEE
Confidence 557899999999999999999999999987654
No 119
>PRK06196 oxidoreductase; Provisional
Probab=97.69 E-value=5.7e-05 Score=54.55 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=29.4
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++++||||+|+||++++++|+++|++|..+
T Consensus 24 l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~ 56 (315)
T PRK06196 24 LSGKTAIVTGGYSGLGLETTRALAQAGAHVIVP 56 (315)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 356899999999999999999999999988654
No 120
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.69 E-value=6e-05 Score=51.70 Aligned_cols=33 Identities=21% Similarity=0.196 Sum_probs=29.1
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++|||++|++|++++++|+++|++|..+
T Consensus 5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~ 37 (239)
T PRK07666 5 LQGKNALITGAGRGIGRAVAIALAKEGVNVGLL 37 (239)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEE
Confidence 345789999999999999999999999987654
No 121
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=97.69 E-value=5.3e-05 Score=60.54 Aligned_cols=34 Identities=29% Similarity=0.366 Sum_probs=30.3
Q ss_pred hhccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 49 FYKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 49 ~~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
...++.++||||+|+||++++++|++.|++|..+
T Consensus 77 ~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval 110 (576)
T PLN03209 77 TKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAG 110 (576)
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEE
Confidence 3457889999999999999999999999998765
No 122
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.69 E-value=6.9e-05 Score=51.16 Aligned_cols=32 Identities=25% Similarity=0.146 Sum_probs=28.8
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.+++++||||+|++|+++++.|.+.|++|..+
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~ 35 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCIN 35 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 46789999999999999999999999988654
No 123
>PRK07102 short chain dehydrogenase; Provisional
Probab=97.68 E-value=6.2e-05 Score=51.85 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=27.4
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++++||||+|+||+++++.|+++|++|..+
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~ 31 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGARLYLA 31 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCEEEEE
Confidence 579999999999999999999999988654
No 124
>PLN02253 xanthoxin dehydrogenase
Probab=97.68 E-value=6.7e-05 Score=52.81 Aligned_cols=33 Identities=12% Similarity=0.224 Sum_probs=29.8
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|+||++++++|+++|++|..+
T Consensus 16 l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~ 48 (280)
T PLN02253 16 LLGKVALVTGGATGIGESIVRLFHKHGAKVCIV 48 (280)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHcCCEEEEE
Confidence 557899999999999999999999999988654
No 125
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=97.68 E-value=6.3e-05 Score=51.41 Aligned_cols=30 Identities=13% Similarity=0.045 Sum_probs=27.0
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++++||||+|+||++++++|++.|++|..+
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~~v~~~ 31 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGYTVAVN 31 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 479999999999999999999999988653
No 126
>PRK07035 short chain dehydrogenase; Provisional
Probab=97.67 E-value=7.3e-05 Score=51.67 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=29.4
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|+||++++++|.+.|++|..+
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~ 38 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGAHVIVS 38 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 456889999999999999999999999987654
No 127
>PRK08278 short chain dehydrogenase; Provisional
Probab=97.67 E-value=7e-05 Score=52.98 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=29.2
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|+||++++++|+++|++|..+
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~ 36 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGANIVIA 36 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 356789999999999999999999999988654
No 128
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=97.67 E-value=6.3e-05 Score=52.16 Aligned_cols=30 Identities=20% Similarity=0.400 Sum_probs=27.0
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
|+++||||+|++|+++++.|+++|++|..+
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~ 30 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIAT 30 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 479999999999999999999999987654
No 129
>PRK09134 short chain dehydrogenase; Provisional
Probab=97.67 E-value=7.1e-05 Score=52.10 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=28.4
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.+++++||||+|+||++++++|.++|++|..+
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g~~v~~~ 39 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHGFDVAVH 39 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 45789999999999999999999999887653
No 130
>PRK06182 short chain dehydrogenase; Validated
Probab=97.67 E-value=6.9e-05 Score=52.66 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=28.6
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++++++||||+|++|++++++|++.|++|..+
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~ 33 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGA 33 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 35789999999999999999999999988654
No 131
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=97.66 E-value=7.3e-05 Score=51.04 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=27.6
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQML 80 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~ 80 (84)
+++++++||||+|+||+++++.|+++|+.|.
T Consensus 4 ~~~~~vlItGa~g~iG~~la~~l~~~g~~v~ 34 (245)
T PRK12936 4 LSGRKALVTGASGGIGEEIARLLHAQGAIVG 34 (245)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEE
Confidence 3567899999999999999999999998664
No 132
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=97.66 E-value=4.3e-05 Score=60.63 Aligned_cols=29 Identities=24% Similarity=0.274 Sum_probs=26.3
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQML 80 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~ 80 (84)
.|+|+||||+||||+++++.|.++|++|.
T Consensus 380 ~mkiLVtGa~G~iG~~l~~~L~~~g~~v~ 408 (668)
T PLN02260 380 SLKFLIYGRTGWIGGLLGKLCEKQGIAYE 408 (668)
T ss_pred CceEEEECCCchHHHHHHHHHHhCCCeEE
Confidence 36899999999999999999999888873
No 133
>PRK07023 short chain dehydrogenase; Provisional
Probab=97.65 E-value=6.8e-05 Score=51.64 Aligned_cols=30 Identities=30% Similarity=0.392 Sum_probs=27.0
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++++||||+|+||++++++|+++|++|..+
T Consensus 2 ~~vlItGasggiG~~ia~~l~~~G~~v~~~ 31 (243)
T PRK07023 2 VRAIVTGHSRGLGAALAEQLLQPGIAVLGV 31 (243)
T ss_pred ceEEEecCCcchHHHHHHHHHhCCCEEEEE
Confidence 479999999999999999999999987654
No 134
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.64 E-value=7.1e-05 Score=51.12 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=29.2
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++++||||+|+||++++++|+++|++|..+
T Consensus 3 l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~ 35 (235)
T PRK06550 3 FMTKTVLITGAASGIGLAQARAFLAQGAQVYGV 35 (235)
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEE
Confidence 456889999999999999999999999987654
No 135
>PRK12939 short chain dehydrogenase; Provisional
Probab=97.64 E-value=8e-05 Score=50.98 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=29.1
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|+||++++++|.++|++|..+
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~ 37 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGATVAFN 37 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEE
Confidence 456889999999999999999999999987654
No 136
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=97.63 E-value=5.8e-05 Score=56.70 Aligned_cols=30 Identities=30% Similarity=0.565 Sum_probs=25.9
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++++||||+|||||++++.++++.++...+
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~ 30 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVV 30 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEE
Confidence 479999999999999999999998775443
No 137
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=97.63 E-value=8.8e-05 Score=51.46 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=28.0
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++||||+|+||+++++.|+++|++|..+
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~ 32 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVA 32 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 4689999999999999999999999988655
No 138
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=97.63 E-value=8.4e-05 Score=51.12 Aligned_cols=32 Identities=13% Similarity=0.231 Sum_probs=28.6
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
+.+++++||||+|+||++++++|+++|++|..
T Consensus 4 ~~~~~~lItG~s~~iG~~la~~l~~~g~~v~~ 35 (247)
T PRK12935 4 LNGKVAIVTGGAKGIGKAITVALAQEGAKVVI 35 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEE
Confidence 34689999999999999999999999998754
No 139
>PRK08017 oxidoreductase; Provisional
Probab=97.63 E-value=8.7e-05 Score=51.18 Aligned_cols=30 Identities=27% Similarity=0.299 Sum_probs=27.1
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++++||||+|+||+++++.|.++|++|..+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~ 32 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAA 32 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 579999999999999999999999987654
No 140
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=97.62 E-value=9.1e-05 Score=50.90 Aligned_cols=31 Identities=16% Similarity=0.414 Sum_probs=27.8
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
+++.++|||++|+||++++++|+++|++|..
T Consensus 2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~ 32 (246)
T PRK12938 2 SQRIAYVTGGMGGIGTSICQRLHKDGFKVVA 32 (246)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCEEEE
Confidence 4578999999999999999999999988754
No 141
>PRK12367 short chain dehydrogenase; Provisional
Probab=97.62 E-value=9.6e-05 Score=52.25 Aligned_cols=35 Identities=26% Similarity=0.415 Sum_probs=30.6
Q ss_pred hhhccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 48 EFYKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 48 ~~~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
..+++++++||||+|+||++++++|+++|++|..+
T Consensus 10 ~~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~ 44 (245)
T PRK12367 10 STWQGKRIGITGASGALGKALTKAFRAKGAKVIGL 44 (245)
T ss_pred HhhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEE
Confidence 34677899999999999999999999999987653
No 142
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=97.62 E-value=9e-05 Score=51.67 Aligned_cols=33 Identities=18% Similarity=0.389 Sum_probs=29.7
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|+||++++++|+++|++|..+
T Consensus 7 l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~ 39 (266)
T PRK06171 7 LQGKIIIVTGGSSGIGLAIVKELLANGANVVNA 39 (266)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence 457899999999999999999999999988654
No 143
>PRK07063 short chain dehydrogenase; Provisional
Probab=97.61 E-value=9.9e-05 Score=51.33 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=29.6
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++++||||+|+||++++++|+++|++|..+
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~ 37 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGAAVALA 37 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 457899999999999999999999999987654
No 144
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=97.61 E-value=8.7e-05 Score=53.66 Aligned_cols=32 Identities=25% Similarity=0.247 Sum_probs=28.7
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.+++++||||+|+||+++++.|+++|++|..+
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~ 36 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGWHVIMA 36 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEE
Confidence 46789999999999999999999999887654
No 145
>PRK06924 short chain dehydrogenase; Provisional
Probab=97.61 E-value=8.6e-05 Score=51.19 Aligned_cols=30 Identities=30% Similarity=0.470 Sum_probs=27.1
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++++||||+|++|+.++++|+++|++|..+
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~~V~~~ 31 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGTHVISI 31 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCCEEEEE
Confidence 579999999999999999999999987654
No 146
>PRK06101 short chain dehydrogenase; Provisional
Probab=97.61 E-value=8.7e-05 Score=51.32 Aligned_cols=30 Identities=30% Similarity=0.309 Sum_probs=27.2
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++++||||+|++|++++++|+++|++|..+
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~~V~~~ 31 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGWQVIAC 31 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCCEEEEE
Confidence 579999999999999999999999987654
No 147
>PRK07060 short chain dehydrogenase; Provisional
Probab=97.61 E-value=9.5e-05 Score=50.57 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=29.4
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++++|||++|++|+++++.|.++|++|..+
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~ 39 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGARVVAA 39 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEE
Confidence 456889999999999999999999999987654
No 148
>PRK05876 short chain dehydrogenase; Provisional
Probab=97.61 E-value=9e-05 Score=52.74 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=29.3
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|+||++++++|.++|++|..+
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~ 36 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARVVLG 36 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 457889999999999999999999999987643
No 149
>PRK08267 short chain dehydrogenase; Provisional
Probab=97.60 E-value=9e-05 Score=51.53 Aligned_cols=30 Identities=20% Similarity=0.183 Sum_probs=27.3
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++++||||+|++|++++++|+++|++|..+
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~ 31 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAY 31 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEE
Confidence 579999999999999999999999988654
No 150
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=97.60 E-value=5.1e-05 Score=54.84 Aligned_cols=30 Identities=37% Similarity=0.568 Sum_probs=27.0
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
|+|+|+|++||+|+++.+.|.+.|++|..+
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~ 30 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIAT 30 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEe
Confidence 689999999999999999999988777654
No 151
>PRK08643 acetoin reductase; Validated
Probab=97.60 E-value=9.9e-05 Score=51.11 Aligned_cols=31 Identities=16% Similarity=0.246 Sum_probs=27.9
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++.++||||+|+||+++++.|+++|++|..+
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~ 32 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIV 32 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 4689999999999999999999999987654
No 152
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=97.60 E-value=9.7e-05 Score=51.41 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=29.6
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|+||+.++++|++.|++|..+
T Consensus 13 l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~ 45 (258)
T PRK06935 13 LDGKVAIVTGGNTGLGQGYAVALAKAGADIIIT 45 (258)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 457899999999999999999999999987654
No 153
>PRK12744 short chain dehydrogenase; Provisional
Probab=97.60 E-value=0.00011 Score=51.15 Aligned_cols=33 Identities=24% Similarity=0.422 Sum_probs=29.0
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++++||||+|+||++++++|++.|++|..+
T Consensus 6 l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i 38 (257)
T PRK12744 6 LKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAI 38 (257)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCcEEEE
Confidence 356889999999999999999999999986544
No 154
>PRK08219 short chain dehydrogenase; Provisional
Probab=97.60 E-value=9.9e-05 Score=49.85 Aligned_cols=30 Identities=27% Similarity=0.327 Sum_probs=26.8
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.++++||||+|++|+++++.|+++ ++|..+
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~ 32 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HTLLLG 32 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CCEEEE
Confidence 368999999999999999999999 887655
No 155
>PRK07856 short chain dehydrogenase; Provisional
Probab=97.60 E-value=9.8e-05 Score=51.22 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=29.2
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|+||++++++|.+.|++|..+
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~ 36 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGATVVVC 36 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 457899999999999999999999999887543
No 156
>PRK06172 short chain dehydrogenase; Provisional
Probab=97.59 E-value=0.0001 Score=50.98 Aligned_cols=33 Identities=12% Similarity=0.250 Sum_probs=29.4
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|+||++++++|.++|++|..+
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~ 37 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVA 37 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE
Confidence 456899999999999999999999999987654
No 157
>PRK05867 short chain dehydrogenase; Provisional
Probab=97.59 E-value=0.0001 Score=51.17 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=29.6
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++++||||+|.||++++++|+++|++|..+
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~ 39 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIA 39 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 457899999999999999999999999987654
No 158
>PRK07775 short chain dehydrogenase; Provisional
Probab=97.59 E-value=0.00011 Score=51.95 Aligned_cols=32 Identities=13% Similarity=0.112 Sum_probs=28.0
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
..+.++||||+|++|++++++|+++|++|..+
T Consensus 9 ~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~ 40 (274)
T PRK07775 9 DRRPALVAGASSGIGAATAIELAAAGFPVALG 40 (274)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 34689999999999999999999999887543
No 159
>PRK07825 short chain dehydrogenase; Provisional
Probab=97.59 E-value=9.9e-05 Score=51.76 Aligned_cols=33 Identities=18% Similarity=0.133 Sum_probs=28.8
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|.||++++++|+++|++|..+
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~ 35 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGARVAIG 35 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 346789999999999999999999999987543
No 160
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=97.59 E-value=0.00011 Score=51.23 Aligned_cols=33 Identities=30% Similarity=0.410 Sum_probs=29.4
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++++||||+|+||++++++|+++|++|..+
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~ 36 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARVAVL 36 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 456899999999999999999999999987654
No 161
>PRK06398 aldose dehydrogenase; Validated
Probab=97.59 E-value=0.00011 Score=51.59 Aligned_cols=33 Identities=21% Similarity=0.418 Sum_probs=29.5
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++++||||+|.||++++++|.+.|++|..+
T Consensus 4 l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~ 36 (258)
T PRK06398 4 LKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINF 36 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEE
Confidence 457899999999999999999999999988653
No 162
>PRK06114 short chain dehydrogenase; Provisional
Probab=97.58 E-value=0.00012 Score=50.99 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=29.8
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.++.++||||+|+||++++++|.+.|++|..+
T Consensus 6 ~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~ 38 (254)
T PRK06114 6 LDGQVAFVTGAGSGIGQRIAIGLAQAGADVALF 38 (254)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 467899999999999999999999999988654
No 163
>PRK12743 oxidoreductase; Provisional
Probab=97.58 E-value=0.00012 Score=51.06 Aligned_cols=31 Identities=13% Similarity=0.002 Sum_probs=28.0
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++||||+|+||++++++|+++|++|..+
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~ 32 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGFDIGIT 32 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 4689999999999999999999999988654
No 164
>PRK06701 short chain dehydrogenase; Provisional
Probab=97.58 E-value=0.0001 Score=52.89 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=30.1
Q ss_pred hhccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 49 FYKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 49 ~~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.+++++++||||+|+||++++++|+++|++|..+
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~ 76 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGADIAIV 76 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 4567899999999999999999999999987654
No 165
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.57 E-value=0.00012 Score=50.85 Aligned_cols=33 Identities=30% Similarity=0.475 Sum_probs=29.5
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|+||++++++|.+.|++|..+
T Consensus 5 l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~ 37 (255)
T PRK06463 5 FKGKVALITGGTRGIGRAIAEAFLREGAKVAVL 37 (255)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence 456899999999999999999999999988654
No 166
>PRK05866 short chain dehydrogenase; Provisional
Probab=97.56 E-value=0.00012 Score=52.65 Aligned_cols=33 Identities=18% Similarity=0.384 Sum_probs=29.7
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|+||++++++|+++|++|..+
T Consensus 38 ~~~k~vlItGasggIG~~la~~La~~G~~Vi~~ 70 (293)
T PRK05866 38 LTGKRILLTGASSGIGEAAAEQFARRGATVVAV 70 (293)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 567899999999999999999999999988654
No 167
>PRK07024 short chain dehydrogenase; Provisional
Probab=97.56 E-value=0.00011 Score=51.10 Aligned_cols=30 Identities=30% Similarity=0.365 Sum_probs=27.4
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++++||||+|+||++++++|+++|++|..+
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~ 32 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLV 32 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEE
Confidence 689999999999999999999999987654
No 168
>PRK08251 short chain dehydrogenase; Provisional
Probab=97.56 E-value=0.00012 Score=50.31 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=26.9
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
+++++||||+|+||++++++|+++|++|..
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~~v~~ 31 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGRDLAL 31 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEE
Confidence 467999999999999999999999987754
No 169
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=97.55 E-value=0.00012 Score=51.21 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=30.2
Q ss_pred hhccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 49 FYKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 49 ~~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.+++++++||||++.||+++++.|++.|++|..+
T Consensus 5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~ 38 (260)
T PRK08416 5 EMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFT 38 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 3567899999999999999999999999987654
No 170
>PRK08589 short chain dehydrogenase; Validated
Probab=97.55 E-value=0.00013 Score=51.45 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=29.7
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++++||||+|.||++++++|+++|++|..+
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~ 36 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGAYVLAV 36 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 457899999999999999999999999988755
No 171
>PRK07074 short chain dehydrogenase; Provisional
Probab=97.55 E-value=0.00013 Score=50.57 Aligned_cols=31 Identities=32% Similarity=0.583 Sum_probs=27.5
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++||||+|+||++++++|+++|++|..+
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~ 32 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGDRVLAL 32 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCCEEEEE
Confidence 4679999999999999999999999887554
No 172
>PRK06181 short chain dehydrogenase; Provisional
Probab=97.55 E-value=0.00013 Score=50.68 Aligned_cols=30 Identities=33% Similarity=0.447 Sum_probs=27.2
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++++||||+|++|++++++|+++|++|..+
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~~Vi~~ 31 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGAQLVLA 31 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCCEEEEE
Confidence 579999999999999999999999987654
No 173
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=97.54 E-value=0.00014 Score=51.08 Aligned_cols=33 Identities=30% Similarity=0.503 Sum_probs=29.6
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|++|++++++|+++|++|..+
T Consensus 8 ~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~ 40 (278)
T PRK08277 8 LKGKVAVITGGGGVLGGAMAKELARAGAKVAIL 40 (278)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 457899999999999999999999999987654
No 174
>PRK09620 hypothetical protein; Provisional
Probab=97.53 E-value=0.00014 Score=51.83 Aligned_cols=33 Identities=27% Similarity=0.529 Sum_probs=28.6
Q ss_pred ccceEEEecc----------------CcchHHHHHHHHHHcCCceEEEE
Q psy8179 51 KDQTVFITGA----------------TGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 51 ~~~~vlitGa----------------tGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
.+++|+||+| |||+|+++++.|+++|++|..|+
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~ 50 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLH 50 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEe
Confidence 5678899965 49999999999999999998664
No 175
>PRK05993 short chain dehydrogenase; Provisional
Probab=97.53 E-value=0.00013 Score=51.67 Aligned_cols=31 Identities=16% Similarity=0.269 Sum_probs=27.9
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++||||+|++|++++++|.++|++|..+
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~ 34 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVFAT 34 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 4689999999999999999999999988654
No 176
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=97.53 E-value=0.00014 Score=49.50 Aligned_cols=30 Identities=17% Similarity=0.341 Sum_probs=26.9
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.++||||+|++|++++++|+++|++|..+
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~ 30 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGYRVAAN 30 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 468999999999999999999999987654
No 177
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=97.53 E-value=0.00014 Score=50.38 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=29.1
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|.||++++++|+++|++|..+
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~ 39 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGAEIIIN 39 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEE
Confidence 457889999999999999999999999887643
No 178
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=97.53 E-value=0.00016 Score=50.11 Aligned_cols=33 Identities=21% Similarity=0.239 Sum_probs=29.5
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|+||+.++++|+++|++|..+
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~ 41 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGAHVLVN 41 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCeEEEE
Confidence 467899999999999999999999999987654
No 179
>PRK05865 hypothetical protein; Provisional
Probab=97.53 E-value=0.0001 Score=61.22 Aligned_cols=30 Identities=30% Similarity=0.509 Sum_probs=27.3
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
|+|+||||+||+|++++++|+++|++|..+
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l 30 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGI 30 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEE
Confidence 479999999999999999999999998754
No 180
>PRK06123 short chain dehydrogenase; Provisional
Probab=97.52 E-value=0.00014 Score=49.97 Aligned_cols=31 Identities=16% Similarity=0.038 Sum_probs=27.2
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++.++||||+|+||++++++|+++|+.|..+
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~ 32 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERGYAVCLN 32 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEe
Confidence 3579999999999999999999999887543
No 181
>PRK05693 short chain dehydrogenase; Provisional
Probab=97.52 E-value=0.00013 Score=51.26 Aligned_cols=30 Identities=20% Similarity=0.302 Sum_probs=27.2
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++++||||+|++|++++++|.+.|++|..+
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~ 31 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWAT 31 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEE
Confidence 579999999999999999999999988654
No 182
>PRK08265 short chain dehydrogenase; Provisional
Probab=97.52 E-value=0.00015 Score=50.87 Aligned_cols=33 Identities=12% Similarity=0.341 Sum_probs=29.3
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++++||||+|.||++++++|+++|++|..+
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~ 36 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIV 36 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 456899999999999999999999999987654
No 183
>PRK07985 oxidoreductase; Provisional
Probab=97.51 E-value=0.00014 Score=52.23 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=29.6
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|+||++++++|+++|++|..+
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~ 79 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAIS 79 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEe
Confidence 456899999999999999999999999998654
No 184
>PRK07062 short chain dehydrogenase; Provisional
Probab=97.51 E-value=0.00017 Score=50.22 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=29.7
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++++.++||||+|+||++++++|+++|++|..+
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~ 38 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGASVAIC 38 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEE
Confidence 457899999999999999999999999988654
No 185
>PRK07576 short chain dehydrogenase; Provisional
Probab=97.51 E-value=0.00017 Score=50.74 Aligned_cols=33 Identities=12% Similarity=0.227 Sum_probs=29.5
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|+||++++++|+++|++|..+
T Consensus 7 ~~~k~ilItGasggIG~~la~~l~~~G~~V~~~ 39 (264)
T PRK07576 7 FAGKNVVVVGGTSGINLGIAQAFARAGANVAVA 39 (264)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 456899999999999999999999999988654
No 186
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=97.50 E-value=0.00017 Score=50.08 Aligned_cols=33 Identities=15% Similarity=0.197 Sum_probs=29.3
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|+||++++++|.++|++|..+
T Consensus 9 l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~ 41 (255)
T PRK06113 9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVS 41 (255)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCeEEEE
Confidence 457899999999999999999999999887654
No 187
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=97.50 E-value=0.00011 Score=54.57 Aligned_cols=27 Identities=52% Similarity=0.752 Sum_probs=22.9
Q ss_pred EEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 55 VFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 55 vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
|+||||+|+||+.++++|++.++.-..
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~li 27 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLI 27 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEE
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEE
Confidence 799999999999999999998775433
No 188
>PRK08177 short chain dehydrogenase; Provisional
Probab=97.50 E-value=0.00015 Score=49.54 Aligned_cols=30 Identities=37% Similarity=0.365 Sum_probs=27.3
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++++||||+|++|++++++|.++|++|..+
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~ 31 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVTAT 31 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEEEE
Confidence 579999999999999999999999988654
No 189
>PRK07478 short chain dehydrogenase; Provisional
Probab=97.49 E-value=0.00019 Score=49.77 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=29.2
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++++||||+|.||.+++++|.+.|++|..+
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~ 36 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGAKVVVG 36 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence 356789999999999999999999999987654
No 190
>KOG1430|consensus
Probab=97.49 E-value=0.00013 Score=55.48 Aligned_cols=31 Identities=39% Similarity=0.610 Sum_probs=25.8
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcC--CceEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCC--PQMLS 81 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g--~~V~~ 81 (84)
+..+|+||||+||+|.|++++|++.+ .+|+.
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv 35 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRV 35 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccccEEEE
Confidence 34679999999999999999999987 44443
No 191
>PRK07454 short chain dehydrogenase; Provisional
Probab=97.49 E-value=0.00017 Score=49.48 Aligned_cols=31 Identities=16% Similarity=0.153 Sum_probs=27.8
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.++++||||+|++|+.++++|+++|++|..+
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~ 36 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGWDLALV 36 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 4689999999999999999999999987654
No 192
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=97.47 E-value=0.00019 Score=49.38 Aligned_cols=30 Identities=20% Similarity=0.012 Sum_probs=27.1
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++++||||+|+||+.+++.|++.|++|..+
T Consensus 3 k~ilItGas~giG~~la~~l~~~g~~v~~~ 32 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAARGWSVGIN 32 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHCCCEEEEE
Confidence 579999999999999999999999887544
No 193
>PRK06953 short chain dehydrogenase; Provisional
Probab=97.47 E-value=0.00017 Score=49.18 Aligned_cols=30 Identities=23% Similarity=0.269 Sum_probs=27.2
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++++||||+|++|++++++|+++|++|..+
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~ 31 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGWRVIAT 31 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCCEEEEE
Confidence 579999999999999999999999987654
No 194
>PRK05854 short chain dehydrogenase; Provisional
Probab=97.45 E-value=0.0002 Score=52.04 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=29.6
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++++||||++.||.+++++|+++|++|..+
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~ 44 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGAEVILP 44 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence 567899999999999999999999999987643
No 195
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=97.45 E-value=0.00022 Score=49.73 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=29.2
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++++||||+|.||++++++|++.|++|..+
T Consensus 5 ~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~ 37 (261)
T PRK08936 5 LEGKVVVITGGSTGLGRAMAVRFGKEKAKVVIN 37 (261)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence 567899999999999999999999999887543
No 196
>PRK05650 short chain dehydrogenase; Provisional
Probab=97.44 E-value=0.0002 Score=50.26 Aligned_cols=30 Identities=27% Similarity=0.240 Sum_probs=26.9
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++++||||+|+||++++++|.++|++|..+
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~ 30 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWRLALA 30 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEE
Confidence 469999999999999999999999987654
No 197
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=97.44 E-value=0.00021 Score=49.92 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=29.6
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||++.||+.++++|+++|++|..+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~ 38 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAGADIVGV 38 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEe
Confidence 457899999999999999999999999988653
No 198
>PRK06198 short chain dehydrogenase; Provisional
Probab=97.43 E-value=0.00022 Score=49.35 Aligned_cols=32 Identities=16% Similarity=0.278 Sum_probs=28.6
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCc-eEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQ-MLS 81 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~-V~~ 81 (84)
+++++++||||+|+||++++++|.++|++ |..
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~ 36 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVI 36 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEE
Confidence 56788999999999999999999999988 654
No 199
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.43 E-value=0.00023 Score=51.43 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=29.7
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++++||||+|+||++++++|+++|++|..+
T Consensus 10 l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~ 42 (306)
T PRK07792 10 LSGKVAVVTGAAAGLGRAEALGLARLGATVVVN 42 (306)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEe
Confidence 567899999999999999999999999987654
No 200
>PRK09242 tropinone reductase; Provisional
Probab=97.43 E-value=0.00024 Score=49.26 Aligned_cols=33 Identities=27% Similarity=0.380 Sum_probs=29.7
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++++||||+|.||++++++|.++|++|..+
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~ 39 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLGADVLIV 39 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE
Confidence 467899999999999999999999999987654
No 201
>PRK06483 dihydromonapterin reductase; Provisional
Probab=97.42 E-value=0.00026 Score=48.58 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=27.9
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.++++||||+|.||++++++|+++|++|..+
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~ 32 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQPVIVS 32 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCCeEEEE
Confidence 4689999999999999999999999988654
No 202
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.40 E-value=0.00026 Score=48.42 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=28.7
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++|||++|++|+++++.|.++|++|..+
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~ 35 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALI 35 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 356789999999999999999999999877543
No 203
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=97.39 E-value=0.00027 Score=49.41 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=29.2
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|++|++++++|+++|++|..+
T Consensus 8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~ 40 (265)
T PRK07097 8 LKGKIALITGASYGIGFAIAKAYAKAGATIVFN 40 (265)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEE
Confidence 456889999999999999999999999987543
No 204
>PRK08339 short chain dehydrogenase; Provisional
Probab=97.38 E-value=0.0003 Score=49.56 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=29.7
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|.||+.++++|+++|++|..+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~ 38 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGADVILL 38 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEE
Confidence 467899999999999999999999999988654
No 205
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.37 E-value=0.00023 Score=54.48 Aligned_cols=25 Identities=48% Similarity=0.781 Sum_probs=22.3
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCC
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCP 77 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~ 77 (84)
++|++||||||+|.+++..|+.+-+
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~ 25 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSD 25 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCC
Confidence 3699999999999999999998754
No 206
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=97.34 E-value=0.00034 Score=47.73 Aligned_cols=30 Identities=23% Similarity=0.358 Sum_probs=27.0
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++++|||++|++|++++++|.++|++|..+
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~~vi~~ 32 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGYRVIAT 32 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEE
Confidence 579999999999999999999999887654
No 207
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=97.33 E-value=0.00034 Score=48.70 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=29.4
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.++.++|||++|.||++++++|.+.|++|..+
T Consensus 8 l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~ 40 (253)
T PRK08993 8 LEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGI 40 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEe
Confidence 557899999999999999999999999987643
No 208
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=97.33 E-value=0.0003 Score=53.97 Aligned_cols=33 Identities=36% Similarity=0.568 Sum_probs=29.4
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++++||||+|+||++++++|.++|++|..+
T Consensus 176 l~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l 208 (406)
T PRK07424 176 LKGKTVAVTGASGTLGQALLKELHQQGAKVVAL 208 (406)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 457899999999999999999999999988654
No 209
>PRK07069 short chain dehydrogenase; Validated
Probab=97.32 E-value=0.0003 Score=48.22 Aligned_cols=28 Identities=29% Similarity=0.470 Sum_probs=25.8
Q ss_pred EEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 55 VFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 55 vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++||||+|++|+++++.|+++|++|..+
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~ 29 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQGAKVFLT 29 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 7999999999999999999999988654
No 210
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=97.32 E-value=0.00037 Score=47.97 Aligned_cols=30 Identities=17% Similarity=0.218 Sum_probs=26.8
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++++|||++|+||.+++++|++.|++|..+
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~ 30 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVA 30 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 469999999999999999999999887554
No 211
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=97.31 E-value=0.00026 Score=48.03 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=25.3
Q ss_pred EEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 55 VFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 55 vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++|||++|++|++++++|+++|++|..+
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~~v~~~ 28 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGAKVIIT 28 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 5899999999999999999999987654
No 212
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=97.30 E-value=0.00034 Score=48.23 Aligned_cols=29 Identities=34% Similarity=0.447 Sum_probs=26.7
Q ss_pred EEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 55 VFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 55 vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
|+|+||||.+|+++++.|++.+++|+.+.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~ 29 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALV 29 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEE
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEE
Confidence 68999999999999999999999998764
No 213
>PRK07109 short chain dehydrogenase; Provisional
Probab=97.29 E-value=0.00036 Score=51.30 Aligned_cols=33 Identities=27% Similarity=0.311 Sum_probs=29.3
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++++.++||||+|.||+.++++|+++|++|..+
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~ 38 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGAKVVLL 38 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 456789999999999999999999999987654
No 214
>PRK07904 short chain dehydrogenase; Provisional
Probab=97.29 E-value=0.00039 Score=48.85 Aligned_cols=33 Identities=21% Similarity=0.370 Sum_probs=28.2
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcC-CceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCC-PQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g-~~V~~I 82 (84)
.+.++++||||+|.+|++++++|+++| ++|..+
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~ 39 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKNAPARVVLA 39 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEE
Confidence 356789999999999999999999985 777543
No 215
>PRK07677 short chain dehydrogenase; Provisional
Probab=97.28 E-value=0.00045 Score=47.90 Aligned_cols=31 Identities=16% Similarity=0.340 Sum_probs=27.6
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++||||+|.+|+++++.|.++|++|..+
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~ 31 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVIT 31 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence 3689999999999999999999999987554
No 216
>PRK07831 short chain dehydrogenase; Provisional
Probab=97.28 E-value=0.00064 Score=47.37 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=29.1
Q ss_pred hhccceEEEeccCcc-hHHHHHHHHHHcCCceEEE
Q psy8179 49 FYKDQTVFITGATGF-LGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 49 ~~~~~~vlitGatGf-iG~~l~~~ll~~g~~V~~I 82 (84)
.+.+++++||||+|+ ||+.+++.|+++|++|..+
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~ 48 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVIS 48 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEE
Confidence 355789999999985 9999999999999987543
No 217
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.28 E-value=0.00045 Score=47.97 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=27.8
Q ss_pred ccceEEEeccCc--chHHHHHHHHHHcCCceEEE
Q psy8179 51 KDQTVFITGATG--FLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 51 ~~~~vlitGatG--fiG~~l~~~ll~~g~~V~~I 82 (84)
+++.++||||+| .+|+.++++|+++|++|..+
T Consensus 4 ~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~ 37 (256)
T PRK12748 4 MKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFT 37 (256)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEE
Confidence 467899999996 59999999999999987654
No 218
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=97.27 E-value=0.0004 Score=48.69 Aligned_cols=30 Identities=20% Similarity=0.202 Sum_probs=27.1
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.++||||+|+||++++++|+++|++|..+
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~ 31 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLH 31 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCCeEEEE
Confidence 468999999999999999999999988654
No 219
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=97.26 E-value=0.00042 Score=47.37 Aligned_cols=27 Identities=30% Similarity=0.609 Sum_probs=23.6
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCce
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQM 79 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V 79 (84)
|+++||||+|+||++++++|.++++.+
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~ 27 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDA 27 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCC
Confidence 479999999999999999999986443
No 220
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.24 E-value=0.0005 Score=43.88 Aligned_cols=29 Identities=34% Similarity=0.528 Sum_probs=24.8
Q ss_pred eEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 54 TVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 54 ~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
+|.|.|||||+|+.+++.|.++ +++..++
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-p~~e~~~ 29 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-PDFELVA 29 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-STEEEEE
T ss_pred CEEEECCCCHHHHHHHHHHhcC-CCccEEE
Confidence 5889999999999999999995 7776554
No 221
>PRK05884 short chain dehydrogenase; Provisional
Probab=97.22 E-value=0.00054 Score=47.29 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=27.0
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++++||||+|.+|+++++.|.++|++|..+
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~ 30 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLV 30 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEE
Confidence 368999999999999999999999988654
No 222
>PRK05872 short chain dehydrogenase; Provisional
Probab=97.22 E-value=0.00057 Score=49.01 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=29.4
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++++||||+|.||..+++.|.+.|++|..+
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~ 39 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGAKLALV 39 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 567899999999999999999999999987544
No 223
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=97.20 E-value=0.00042 Score=47.39 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=25.4
Q ss_pred EEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 55 VFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 55 vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++||||+|+||.++++.|.++|++|..+
T Consensus 1 vlItGas~giG~~~a~~l~~~G~~v~~~ 28 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGFEICVH 28 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 5899999999999999999999987654
No 224
>PRK07832 short chain dehydrogenase; Provisional
Probab=97.19 E-value=0.00055 Score=48.13 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=26.6
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++++||||+|.+|.+++++|+++|++|..+
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~vv~~ 30 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAELFLT 30 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 468999999999999999999999887543
No 225
>PRK08309 short chain dehydrogenase; Provisional
Probab=97.16 E-value=0.0006 Score=46.70 Aligned_cols=29 Identities=17% Similarity=0.176 Sum_probs=25.4
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
|.++|||||||+|. +++.|.+.|++|..+
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~G~~V~v~ 29 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEKGFHVSVI 29 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCcCEEEEE
Confidence 46899999999987 999999999998754
No 226
>PLN02780 ketoreductase/ oxidoreductase
Probab=97.14 E-value=0.00068 Score=49.69 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=28.8
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.++.++||||+|.||++++++|.++|++|..+
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~ 83 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLV 83 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEE
Confidence 36889999999999999999999999988654
No 227
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=97.10 E-value=0.00068 Score=54.61 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=29.8
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|+||++++++|++.|++|..+
T Consensus 412 l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~ 444 (676)
T TIGR02632 412 LARRVAFVTGGAGGIGRETARRLAAEGAHVVLA 444 (676)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEE
Confidence 567899999999999999999999999988654
No 228
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=97.10 E-value=0.00076 Score=47.01 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=27.0
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
|+++||||+|.||+.++++|+++|++|..+
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~ 30 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVIS 30 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEE
Confidence 479999999999999999999999987654
No 229
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=97.09 E-value=0.00098 Score=42.36 Aligned_cols=26 Identities=35% Similarity=0.304 Sum_probs=23.4
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCc
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQ 78 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~ 78 (84)
++++||||+|++|.+++++|.++|+.
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~ 26 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGAR 26 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCC
Confidence 46899999999999999999998864
No 230
>PRK06139 short chain dehydrogenase; Provisional
Probab=97.08 E-value=0.00074 Score=49.83 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=29.3
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.++.++||||+|.||++++++|.++|++|..+
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~ 37 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGARLVLA 37 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 456889999999999999999999999987654
No 231
>PRK06125 short chain dehydrogenase; Provisional
Probab=97.07 E-value=0.0011 Score=46.20 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=29.2
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++|||++|.+|.++++.|.+.|++|..+
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~ 37 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGCHLHLV 37 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE
Confidence 456899999999999999999999999887654
No 232
>PRK07201 short chain dehydrogenase; Provisional
Probab=97.06 E-value=0.00078 Score=52.78 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=29.5
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++++||||+|+||++++++|+++|++|..+
T Consensus 369 ~~~k~vlItGas~giG~~la~~l~~~G~~V~~~ 401 (657)
T PRK07201 369 LVGKVVLITGASSGIGRATAIKVAEAGATVFLV 401 (657)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEE
Confidence 456889999999999999999999999987654
No 233
>PRK05855 short chain dehydrogenase; Validated
Probab=97.04 E-value=0.00087 Score=51.00 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=29.2
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+|+||++++++|.++|++|..+
T Consensus 313 ~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~ 345 (582)
T PRK05855 313 FSGKLVVVTGAGSGIGRETALAFAREGAEVVAS 345 (582)
T ss_pred CCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEE
Confidence 456789999999999999999999999987654
No 234
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.04 E-value=0.0006 Score=51.42 Aligned_cols=27 Identities=33% Similarity=0.272 Sum_probs=24.2
Q ss_pred hhccceEEEeccCcchHHHHHHHHHHc
Q psy8179 49 FYKDQTVFITGATGFLGSLLVEKLLRC 75 (84)
Q Consensus 49 ~~~~~~vlitGatGfiG~~l~~~ll~~ 75 (84)
.+.+++|+||||+|++|+.++++|.++
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~ 178 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAK 178 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhh
Confidence 457799999999999999999999864
No 235
>PRK06720 hypothetical protein; Provisional
Probab=97.02 E-value=0.0013 Score=44.56 Aligned_cols=34 Identities=12% Similarity=0.090 Sum_probs=30.1
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
++++.++||||++.||..+++.|.+.|++|..++
T Consensus 14 l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~ 47 (169)
T PRK06720 14 LAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTD 47 (169)
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEE
Confidence 4678999999999999999999999999886553
No 236
>PRK07791 short chain dehydrogenase; Provisional
Probab=96.98 E-value=0.0012 Score=47.29 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=29.4
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++++||||++.||+.++++|++.|++|..+
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~ 36 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVN 36 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEe
Confidence 467899999999999999999999999987554
No 237
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=96.98 E-value=0.00096 Score=56.35 Aligned_cols=25 Identities=56% Similarity=0.858 Sum_probs=23.2
Q ss_pred cceEEEeccCcchHHHHHHHHHHcC
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCC 76 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g 76 (84)
.++|+|||||||+|++++++|++++
T Consensus 971 ~~~VlvTGatGflG~~l~~~Ll~~~ 995 (1389)
T TIGR03443 971 PITVFLTGATGFLGSFILRDLLTRR 995 (1389)
T ss_pred CceEEEeCCccccHHHHHHHHHhcC
Confidence 4789999999999999999999876
No 238
>PRK07041 short chain dehydrogenase; Provisional
Probab=96.97 E-value=0.00081 Score=45.72 Aligned_cols=27 Identities=11% Similarity=0.167 Sum_probs=24.5
Q ss_pred EEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 56 FITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 56 litGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+||||+|++|++++++|+++|++|..+
T Consensus 1 lItGas~~iG~~~a~~l~~~G~~v~~~ 27 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGARVTIA 27 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCCEEEEE
Confidence 589999999999999999999988654
No 239
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=96.89 E-value=0.0014 Score=47.94 Aligned_cols=33 Identities=30% Similarity=0.426 Sum_probs=29.9
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.++++++|||||+=||..++++|.++|++|..|
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLv 36 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLILV 36 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 456889999999999999999999999998754
No 240
>PRK08303 short chain dehydrogenase; Provisional
Probab=96.87 E-value=0.0017 Score=47.20 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=29.7
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.++.++||||++-||..++++|++.|++|..+
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~ 38 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAAGATVYVT 38 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 467899999999999999999999999987654
No 241
>PRK08324 short chain dehydrogenase; Validated
Probab=96.86 E-value=0.0014 Score=52.56 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=29.4
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.++.++||||+|+||++++++|.+.|++|..+
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~ 452 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEGACVVLA 452 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEE
Confidence 467899999999999999999999999987654
No 242
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.86 E-value=0.0019 Score=45.05 Aligned_cols=33 Identities=15% Similarity=0.330 Sum_probs=28.6
Q ss_pred hccceEEEeccCc--chHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATG--FLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatG--fiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++||||+| .||++++++|+++|++|..+
T Consensus 4 l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~ 38 (256)
T PRK12859 4 LKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFT 38 (256)
T ss_pred cCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEE
Confidence 4578999999996 79999999999999887543
No 243
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.74 E-value=0.0022 Score=48.48 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=29.5
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
..+++++||||+|.||..+++.|.++|++|..+
T Consensus 208 ~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~ 240 (450)
T PRK08261 208 LAGKVALVTGAARGIGAAIAEVLARDGAHVVCL 240 (450)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE
Confidence 457899999999999999999999999987654
No 244
>PRK06484 short chain dehydrogenase; Validated
Probab=96.73 E-value=0.0025 Score=48.76 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=29.7
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
..++.++||||+|.||..++++|.++|++|..+
T Consensus 267 ~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~ 299 (520)
T PRK06484 267 ESPRVVAITGGARGIGRAVADRFAAAGDRLLII 299 (520)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 467899999999999999999999999988654
No 245
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.62 E-value=0.0033 Score=43.97 Aligned_cols=33 Identities=3% Similarity=0.043 Sum_probs=29.4
Q ss_pred hccceEEEeccC--cchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGAT--GFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGat--GfiG~~l~~~ll~~g~~V~~I 82 (84)
++++.++||||+ +=||..++++|++.|++|..+
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~ 39 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYT 39 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEe
Confidence 467899999999 789999999999999988654
No 246
>PRK07578 short chain dehydrogenase; Provisional
Probab=96.62 E-value=0.0033 Score=42.15 Aligned_cols=28 Identities=21% Similarity=0.535 Sum_probs=24.5
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
++++||||+|.+|++++++|.++ ++|..
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~~vi~ 28 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-HEVIT 28 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-CcEEE
Confidence 46999999999999999999988 76654
No 247
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=96.61 E-value=0.003 Score=44.81 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.8
Q ss_pred ccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 59 GATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 59 GatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
.+|||+|+++++.|+++|++|..++
T Consensus 23 ~SSG~iG~aLA~~L~~~G~~V~li~ 47 (229)
T PRK06732 23 HSTGQLGKIIAETFLAAGHEVTLVT 47 (229)
T ss_pred ccchHHHHHHHHHHHhCCCEEEEEE
Confidence 6899999999999999999998764
No 248
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=96.59 E-value=0.0038 Score=45.31 Aligned_cols=31 Identities=29% Similarity=0.274 Sum_probs=27.5
Q ss_pred cceEEEeccCcchHHHHHHHHHHcC-CceEEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCC-PQMLSL 82 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g-~~V~~I 82 (84)
.++++||||++.||.+++++|+++| ++|..+
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~ 34 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEWHVIMA 34 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCEEEEE
Confidence 4689999999999999999999999 877543
No 249
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.56 E-value=0.004 Score=44.28 Aligned_cols=33 Identities=9% Similarity=0.085 Sum_probs=29.2
Q ss_pred hccceEEEeccCc--chHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATG--FLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatG--fiG~~l~~~ll~~g~~V~~I 82 (84)
++++.++||||++ =||+.++++|++.|++|..+
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~ 39 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFT 39 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEe
Confidence 4678999999996 89999999999999988654
No 250
>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]
Probab=96.53 E-value=0.0038 Score=47.03 Aligned_cols=32 Identities=34% Similarity=0.425 Sum_probs=29.7
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
.|+.+|||-||.-|+.+.+.|+++||+|..++
T Consensus 2 ~K~ALITGITGQDGsYLa~lLLekGY~VhGi~ 33 (345)
T COG1089 2 GKVALITGITGQDGSYLAELLLEKGYEVHGIK 33 (345)
T ss_pred CceEEEecccCCchHHHHHHHHhcCcEEEEEe
Confidence 47889999999999999999999999998875
No 251
>PRK06484 short chain dehydrogenase; Validated
Probab=96.53 E-value=0.0037 Score=47.79 Aligned_cols=32 Identities=25% Similarity=0.458 Sum_probs=29.0
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.+++++||||++.||..++++|.++|++|..+
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~~~ 35 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGDQVVVA 35 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCCEEEEE
Confidence 56889999999999999999999999988654
No 252
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.51 E-value=0.0053 Score=43.05 Aligned_cols=33 Identities=3% Similarity=-0.032 Sum_probs=28.9
Q ss_pred hccceEEEeccC--cchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGAT--GFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGat--GfiG~~l~~~ll~~g~~V~~I 82 (84)
++++.++||||+ +-||+.++++|++.|++|..+
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~ 42 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRALGAELAVT 42 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEE
Confidence 567899999998 589999999999999987654
No 253
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.44 E-value=0.0053 Score=43.20 Aligned_cols=33 Identities=9% Similarity=0.096 Sum_probs=28.7
Q ss_pred hccceEEEecc--CcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGA--TGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGa--tGfiG~~l~~~ll~~g~~V~~I 82 (84)
++++.++|||| ++-||+.+++.|+++|++|...
T Consensus 4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~ 38 (261)
T PRK08690 4 LQGKKILITGMISERSIAYGIAKACREQGAELAFT 38 (261)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEE
Confidence 56789999997 6799999999999999988654
No 254
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=96.40 E-value=0.0065 Score=39.19 Aligned_cols=28 Identities=36% Similarity=0.503 Sum_probs=24.5
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQML 80 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~ 80 (84)
|.++||||++=||..++++|+++|..+.
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v 28 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVV 28 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEE
Confidence 5799999999999999999999965443
No 255
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=96.33 E-value=0.0052 Score=47.14 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=31.0
Q ss_pred hccceEEEecc----------------CcchHHHHHHHHHHcCCceEEEE
Q psy8179 50 YKDQTVFITGA----------------TGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGa----------------tGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
+.+++++|||| +|.+|..+++.|.+.|++|..++
T Consensus 186 l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~ 235 (399)
T PRK05579 186 LAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVS 235 (399)
T ss_pred cCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeC
Confidence 57899999999 99999999999999999997664
No 256
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.32 E-value=0.0071 Score=41.10 Aligned_cols=33 Identities=24% Similarity=0.309 Sum_probs=28.7
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++++|.||+|.+|+.+++.|.+.|++|..+
T Consensus 26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~ 58 (194)
T cd01078 26 LKGKTAVVLGGTGPVGQRAAVLLAREGARVVLV 58 (194)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 456889999999999999999999998877643
No 257
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.28 E-value=0.0052 Score=45.70 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=24.1
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCce
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQM 79 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V 79 (84)
++|.|.|||||+|..+++.|.+++|.+
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~ 28 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPV 28 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCc
Confidence 579999999999999999999977654
No 258
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=96.25 E-value=0.0083 Score=42.11 Aligned_cols=33 Identities=9% Similarity=0.114 Sum_probs=28.5
Q ss_pred hccceEEEeccC--cchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGAT--GFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGat--GfiG~~l~~~ll~~g~~V~~I 82 (84)
+.++.++||||+ +=||..++++|.+.|++|..+
T Consensus 4 l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~ 38 (258)
T PRK07370 4 LTGKKALVTGIANNRSIAWGIAQQLHAAGAELGIT 38 (258)
T ss_pred cCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEE
Confidence 356889999986 789999999999999998654
No 259
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.24 E-value=0.0082 Score=42.21 Aligned_cols=33 Identities=9% Similarity=0.128 Sum_probs=29.0
Q ss_pred hccceEEEeccC--cchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGAT--GFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGat--GfiG~~l~~~ll~~g~~V~~I 82 (84)
+.++.++||||+ +=||..++++|++.|++|..+
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~ 39 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFT 39 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEe
Confidence 457899999997 899999999999999988654
No 260
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=96.24 E-value=0.0076 Score=42.82 Aligned_cols=31 Identities=23% Similarity=0.363 Sum_probs=28.6
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
|+|.|.||||-+|+++++....+||+|+.|.
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAiv 31 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIV 31 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEE
Confidence 4688999999999999999999999998874
No 261
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.23 E-value=0.0064 Score=45.65 Aligned_cols=30 Identities=30% Similarity=0.307 Sum_probs=25.2
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.+|.|+|||||+|..+++.|.++++.+..+
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l 34 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTL 34 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEE
Confidence 579999999999999999999866655443
No 262
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.22 E-value=0.0089 Score=42.40 Aligned_cols=33 Identities=9% Similarity=0.188 Sum_probs=28.7
Q ss_pred hccceEEEeccCc--chHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATG--FLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatG--fiG~~l~~~ll~~g~~V~~I 82 (84)
++++.++||||++ =||+.+++.|++.|++|..+
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~ 38 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFT 38 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEE
Confidence 5678999999985 89999999999999987643
No 263
>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=96.21 E-value=0.009 Score=41.07 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=29.0
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
..++.++||||++-||..+++.|.+.|+.|..+
T Consensus 3 ~~~~~ilITGas~GiG~aia~~l~~~G~~v~~~ 35 (251)
T COG1028 3 LSGKVALVTGASSGIGRAIARALAREGARVVVA 35 (251)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEE
Confidence 456889999999999999999999999886654
No 264
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.19 E-value=0.0098 Score=41.80 Aligned_cols=33 Identities=9% Similarity=0.100 Sum_probs=28.4
Q ss_pred hccceEEEeccCc--chHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATG--FLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatG--fiG~~l~~~ll~~g~~V~~I 82 (84)
+.++.++||||++ =||..++++|.++|++|...
T Consensus 6 ~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~ 40 (260)
T PRK06603 6 LQGKKGLITGIANNMSISWAIAQLAKKHGAELWFT 40 (260)
T ss_pred cCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEE
Confidence 4568899999996 69999999999999987643
No 265
>PRK08862 short chain dehydrogenase; Provisional
Probab=96.14 E-value=0.0094 Score=41.44 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=29.3
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++++.++||||++=||..++++|.++|++|..+
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~ 35 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILC 35 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEE
Confidence 456899999999999999999999999987654
No 266
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.11 E-value=0.0098 Score=41.71 Aligned_cols=32 Identities=6% Similarity=0.141 Sum_probs=28.4
Q ss_pred hccceEEEecc--CcchHHHHHHHHHHcCCceEE
Q psy8179 50 YKDQTVFITGA--TGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 50 ~~~~~vlitGa--tGfiG~~l~~~ll~~g~~V~~ 81 (84)
+.++.++|||| ++-||..++++|++.|++|..
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l 38 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVL 38 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEE
Confidence 45689999999 899999999999999998754
No 267
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.07 E-value=0.012 Score=42.06 Aligned_cols=33 Identities=9% Similarity=0.078 Sum_probs=28.6
Q ss_pred hccceEEEeccC--cchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGAT--GFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGat--GfiG~~l~~~ll~~g~~V~~I 82 (84)
+.++.++||||+ +=||..++++|.+.|++|..+
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~ 37 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFT 37 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEE
Confidence 356899999997 789999999999999987654
No 268
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.05 E-value=0.011 Score=42.09 Aligned_cols=34 Identities=6% Similarity=0.009 Sum_probs=29.3
Q ss_pred hhccceEEEeccC--cchHHHHHHHHHHcCCceEEE
Q psy8179 49 FYKDQTVFITGAT--GFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 49 ~~~~~~vlitGat--GfiG~~l~~~ll~~g~~V~~I 82 (84)
.++++.++||||+ +=||..+++.|++.|++|..+
T Consensus 7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~ 42 (272)
T PRK08159 7 LMAGKRGLILGVANNRSIAWGIAKACRAAGAELAFT 42 (272)
T ss_pred cccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEE
Confidence 3567899999997 789999999999999988644
No 269
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=95.94 E-value=0.014 Score=40.68 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=25.0
Q ss_pred eEEEeccCcchHHHHHHHHHH----cCCceEEE
Q psy8179 54 TVFITGATGFLGSLLVEKLLR----CCPQMLSL 82 (84)
Q Consensus 54 ~vlitGatGfiG~~l~~~ll~----~g~~V~~I 82 (84)
.++||||++.||.+++++|.+ .|++|..+
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~ 34 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLS 34 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcEEEEE
Confidence 589999999999999999997 68877554
No 270
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.93 E-value=0.014 Score=41.02 Aligned_cols=33 Identities=12% Similarity=0.113 Sum_probs=28.5
Q ss_pred hccceEEEecc--CcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGA--TGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGa--tGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.++.++|||| ++=||..++++|++.|++|..+
T Consensus 4 l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~ 38 (260)
T PRK06997 4 LAGKRILITGLLSNRSIAYGIAKACKREGAELAFT 38 (260)
T ss_pred cCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEE
Confidence 45788999996 5789999999999999998654
No 271
>KOG0747|consensus
Probab=95.91 E-value=0.0057 Score=45.94 Aligned_cols=31 Identities=32% Similarity=0.622 Sum_probs=25.6
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.++++||||+|||||+.+..+..+-++...|
T Consensus 6 ~~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v 36 (331)
T KOG0747|consen 6 EKNVLITGGAGFIGSNFINYLVDKYPDYKFV 36 (331)
T ss_pred cceEEEecCcCcchhhhhhhcccCCCCCcEE
Confidence 3789999999999999999998875554444
No 272
>KOG1203|consensus
Probab=95.89 E-value=0.011 Score=45.84 Aligned_cols=33 Identities=36% Similarity=0.454 Sum_probs=29.5
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.+...|+|+||||.+|+.+++.|++.|+.|+.+
T Consensus 77 ~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~ 109 (411)
T KOG1203|consen 77 KKPTTVLVVGATGKVGRRIVKILLKRGFSVRAL 109 (411)
T ss_pred CCCCeEEEecCCCchhHHHHHHHHHCCCeeeee
Confidence 445789999999999999999999999998765
No 273
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=95.84 E-value=0.011 Score=42.88 Aligned_cols=29 Identities=21% Similarity=0.209 Sum_probs=25.7
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
|+|+|+||||+ |+.+++.|.+.|++|...
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s 29 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVT 29 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCeEEEE
Confidence 57999999999 999999999999887643
No 274
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=95.77 E-value=0.016 Score=42.21 Aligned_cols=31 Identities=23% Similarity=0.336 Sum_probs=28.1
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
++|.++|||||+=||..+++.|.+.|++|..
T Consensus 5 ~~kv~lITGASSGiG~A~A~~l~~~G~~vvl 35 (246)
T COG4221 5 KGKVALITGASSGIGEATARALAEAGAKVVL 35 (246)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHCCCeEEE
Confidence 4578999999999999999999999998754
No 275
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.70 E-value=0.014 Score=43.61 Aligned_cols=23 Identities=39% Similarity=0.469 Sum_probs=21.2
Q ss_pred ceEEEeccCcchHHHHHHHHHHc
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRC 75 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~ 75 (84)
.+|.|.|||||+|+.+++.|..+
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~ 26 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANH 26 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcC
Confidence 57999999999999999999875
No 276
>PRK06940 short chain dehydrogenase; Provisional
Probab=95.70 E-value=0.017 Score=41.03 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=24.0
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.+.++|||+ |+||++++++|. +|++|..+
T Consensus 2 ~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~ 30 (275)
T PRK06940 2 KEVVVVIGA-GGIGQAIARRVG-AGKKVLLA 30 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHHh-CCCEEEEE
Confidence 367899998 689999999996 78887654
No 277
>KOG1431|consensus
Probab=95.67 E-value=0.012 Score=43.36 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=23.3
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCC
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCP 77 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~ 77 (84)
++|+|||++|++|+.|.+.+..+++
T Consensus 2 ~kIlVtGg~GLVGsAi~~vv~~q~~ 26 (315)
T KOG1431|consen 2 KKILVTGGTGLVGSAIVKVVQEQGF 26 (315)
T ss_pred ceEEEecCCchHHHHHHHHHHhcCC
Confidence 5799999999999999999998876
No 278
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=95.62 E-value=0.016 Score=43.61 Aligned_cols=31 Identities=29% Similarity=0.270 Sum_probs=25.4
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
..+|.|.|||||+|..+++.|.+++|.+..+
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l 37 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSL 37 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceE
Confidence 3579999999999999999999876654433
No 279
>KOG1205|consensus
Probab=95.58 E-value=0.024 Score=41.94 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=30.4
Q ss_pred hhhccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 48 EFYKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 48 ~~~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
..+.++.|+||||+.=||.+++..|.+.|..+..+
T Consensus 8 e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lv 42 (282)
T KOG1205|consen 8 ERLAGKVVLITGASSGIGEALAYELAKRGAKLVLV 42 (282)
T ss_pred HHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEe
Confidence 44678999999999999999999999999875544
No 280
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=95.49 E-value=0.014 Score=43.68 Aligned_cols=29 Identities=31% Similarity=0.313 Sum_probs=24.4
Q ss_pred eEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 54 TVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 54 ~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+|.|.|||||+|..+++.|.++++.+..+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l 29 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKL 29 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhE
Confidence 47899999999999999999877765443
No 281
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.47 E-value=0.022 Score=42.38 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.3
Q ss_pred ceEEEeccCcchHHHHHHHHHHcC
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCC 76 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g 76 (84)
.+|+||||+|++|++++..|+..+
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~ 26 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGD 26 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCc
Confidence 469999999999999999998853
No 282
>PRK05599 hypothetical protein; Provisional
Probab=95.31 E-value=0.027 Score=39.16 Aligned_cols=29 Identities=14% Similarity=0.176 Sum_probs=24.8
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
|.++||||++-||..++++|. +|++|..+
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~ 29 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HGEDVVLA 29 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CCCEEEEE
Confidence 468999999999999999998 58877554
No 283
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=95.22 E-value=0.025 Score=42.37 Aligned_cols=29 Identities=34% Similarity=0.512 Sum_probs=23.6
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++|.|.|||||+|..+++.|.++ +.+..+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h-P~~el~ 29 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH-PEVEIT 29 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-CCceEE
Confidence 46899999999999999999876 444433
No 284
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=95.08 E-value=0.031 Score=42.66 Aligned_cols=25 Identities=24% Similarity=0.542 Sum_probs=22.7
Q ss_pred ccceEEEeccCcchHHHHHHHHHHc
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRC 75 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~ 75 (84)
..++|.|.|||||+|..+++.|.++
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~h 61 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANH 61 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhC
Confidence 4468999999999999999999887
No 285
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=95.08 E-value=0.035 Score=40.88 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=29.1
Q ss_pred hccceEEEecc--CcchHHHHHHHHHHcCCceEE
Q psy8179 50 YKDQTVFITGA--TGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 50 ~~~~~vlitGa--tGfiG~~l~~~ll~~g~~V~~ 81 (84)
+++|.++|||| +.=||..+++.|.+.|.+|..
T Consensus 7 l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~ 40 (303)
T PLN02730 7 LRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV 40 (303)
T ss_pred CCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE
Confidence 67899999999 799999999999999998754
No 286
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=94.96 E-value=0.034 Score=41.89 Aligned_cols=30 Identities=27% Similarity=0.265 Sum_probs=24.3
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQML 80 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~ 80 (84)
+..+|.|.|||||+|..+++.|.++.+.+.
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~ 32 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVG 32 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCce
Confidence 446799999999999999999998544443
No 287
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=94.95 E-value=0.025 Score=41.82 Aligned_cols=29 Identities=31% Similarity=0.395 Sum_probs=23.6
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
|+++|||++|.+|+.|.+.|. .+++|..+
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~a~ 29 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEFEVIAT 29 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCceEEec
Confidence 359999999999999999998 44666543
No 288
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=94.90 E-value=0.036 Score=41.30 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=23.0
Q ss_pred ceEEEeccCcchHHHHHHHHHHcC-CceEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCC-PQMLS 81 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g-~~V~~ 81 (84)
++|.|+|++||+|+++++.|.++. .++..
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~ 30 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAK 30 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEE
Confidence 368999999999999999888763 24443
No 289
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=94.74 E-value=0.042 Score=41.16 Aligned_cols=29 Identities=31% Similarity=0.405 Sum_probs=25.7
Q ss_pred eEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 54 TVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 54 ~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
+|.|.|++||.|..+++.|..+ +++..++
T Consensus 3 ~v~IvGasGy~G~el~rlL~~H-P~~el~~ 31 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGR-DDIELLS 31 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCC-CCeEEEE
Confidence 6899999999999999999998 8887655
No 290
>PLN00015 protochlorophyllide reductase
Probab=94.69 E-value=0.036 Score=39.97 Aligned_cols=27 Identities=26% Similarity=0.222 Sum_probs=23.9
Q ss_pred EEeccCcchHHHHHHHHHHcC-CceEEE
Q psy8179 56 FITGATGFLGSLLVEKLLRCC-PQMLSL 82 (84)
Q Consensus 56 litGatGfiG~~l~~~ll~~g-~~V~~I 82 (84)
+||||++-||..++++|+++| ++|..+
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~V~~~ 28 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWHVVMA 28 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCEEEEE
Confidence 589999999999999999999 877543
No 291
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=94.58 E-value=0.063 Score=37.32 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=25.9
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
|+|.|.||+|.+|+.+...|.+.|++|..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v 29 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIII 29 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEE
Confidence 46899999999999999999999988753
No 292
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=94.55 E-value=0.052 Score=40.58 Aligned_cols=30 Identities=30% Similarity=0.411 Sum_probs=25.3
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
.+|.|.|||||+|..+++.|.++ +++..++
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~h-p~~~l~~ 32 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGR-SDIELLS 32 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcC-CCeEEEE
Confidence 46899999999999999988887 6776554
No 293
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=94.43 E-value=0.05 Score=40.63 Aligned_cols=23 Identities=39% Similarity=0.531 Sum_probs=21.2
Q ss_pred ceEEEeccCcchHHHHHHHHHHc
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRC 75 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~ 75 (84)
++|.|.||||++|+.+++.|.++
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~ 25 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNH 25 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcC
Confidence 57999999999999999999875
No 294
>KOG0725|consensus
Probab=94.27 E-value=0.088 Score=38.21 Aligned_cols=33 Identities=12% Similarity=0.255 Sum_probs=30.2
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.++.++|||++.=||+.++.+|.+.|.+|...
T Consensus 6 l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~ 38 (270)
T KOG0725|consen 6 LAGKVALVTGGSSGIGKAIALLLAKAGAKVVIT 38 (270)
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 568899999999999999999999999988764
No 295
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=94.19 E-value=0.07 Score=40.90 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=30.1
Q ss_pred hccceEEEecc----------------CcchHHHHHHHHHHcCCceEEEE
Q psy8179 50 YKDQTVFITGA----------------TGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGa----------------tGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
+.+++++|||| ||.+|..+++.+...|++|..++
T Consensus 183 ~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~ 232 (390)
T TIGR00521 183 LEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLIT 232 (390)
T ss_pred cCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeC
Confidence 56799999987 57899999999999999998764
No 296
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=93.88 E-value=0.11 Score=35.97 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=19.8
Q ss_pred cCcchHHHHHHHHHHcCCceEEEE
Q psy8179 60 ATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 60 atGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
+||-.|..+++.+...|++|+.|+
T Consensus 27 SSG~~G~~lA~~~~~~Ga~V~li~ 50 (185)
T PF04127_consen 27 SSGKMGAALAEEAARRGAEVTLIH 50 (185)
T ss_dssp --SHHHHHHHHHHHHTT-EEEEEE
T ss_pred CcCHHHHHHHHHHHHCCCEEEEEe
Confidence 789999999999999999999886
No 297
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.87 E-value=0.1 Score=38.26 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=28.7
Q ss_pred hccceEEEeccC--cchHHHHHHHHHHcCCceEE
Q psy8179 50 YKDQTVFITGAT--GFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 50 ~~~~~vlitGat--GfiG~~l~~~ll~~g~~V~~ 81 (84)
+.+|.++|||++ .-||+.+++.|.++|++|..
T Consensus 6 ~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv 39 (299)
T PRK06300 6 LTGKIAFIAGIGDDQGYGWGIAKALAEAGATILV 39 (299)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEE
Confidence 567899999995 89999999999999999865
No 298
>KOG2865|consensus
Probab=93.71 E-value=0.086 Score=40.10 Aligned_cols=32 Identities=34% Similarity=0.500 Sum_probs=25.9
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++-..-|-|||||+|+.++.+|.+.|.+|..=
T Consensus 60 sGiVaTVFGAtGFlGryvvnklak~GSQviiP 91 (391)
T KOG2865|consen 60 SGIVATVFGATGFLGRYVVNKLAKMGSQVIIP 91 (391)
T ss_pred cceEEEEecccccccHHHHHHHhhcCCeEEEe
Confidence 34445566999999999999999999887653
No 299
>KOG1372|consensus
Probab=93.67 E-value=0.1 Score=39.14 Aligned_cols=32 Identities=34% Similarity=0.349 Sum_probs=29.4
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
.+..+|||-||-=||.+.+.|+.+||+|+.|+
T Consensus 28 rkvALITGItGQDGSYLaEfLL~KgYeVHGii 59 (376)
T KOG1372|consen 28 RKVALITGITGQDGSYLAEFLLSKGYEVHGII 59 (376)
T ss_pred ceEEEEecccCCCchHHHHHHHhCCceeeEEE
Confidence 45689999999999999999999999999875
No 300
>KOG4039|consensus
Probab=93.49 E-value=0.086 Score=37.68 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=27.1
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
..+..+|.||||..|+.+++++.+. +...+||
T Consensus 17 q~~s~fvlGAtG~~G~~llk~~~E~-~~FSKV~ 48 (238)
T KOG4039|consen 17 QNMSGFVLGATGLCGGGLLKHAQEA-PQFSKVY 48 (238)
T ss_pred hccceEEEeccccccHHHHHHHHhc-ccceeEE
Confidence 4678999999999999999999997 5555555
No 301
>KOG1201|consensus
Probab=93.37 E-value=0.16 Score=38.02 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=29.3
Q ss_pred hhhhccceEEEeccCcchHHHHHHHHHHcCCceE
Q psy8179 47 QEFYKDQTVFITGATGFLGSLLVEKLLRCCPQML 80 (84)
Q Consensus 47 ~~~~~~~~vlitGatGfiG~~l~~~ll~~g~~V~ 80 (84)
.....++.|+||||++=+|+.++.++++.|..+.
T Consensus 33 ~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~v 66 (300)
T KOG1201|consen 33 LKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLV 66 (300)
T ss_pred hhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEE
Confidence 3456788999999999999999999999987553
No 302
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.33 E-value=0.13 Score=38.84 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=28.6
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++++|+|+++ +|..+++.|++.|++|..+
T Consensus 3 ~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~ 34 (450)
T PRK14106 3 LKGKKVLVVGAGV-SGLALAKFLKKLGAKVILT 34 (450)
T ss_pred cCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEE
Confidence 4578999999999 9999999999999998765
No 303
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.17 E-value=0.17 Score=37.27 Aligned_cols=34 Identities=15% Similarity=0.257 Sum_probs=30.1
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
+.+++++|.|++|++|+.+...|++.|..|...|
T Consensus 157 l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~ 190 (283)
T PRK14192 157 LAGKHAVVVGRSAILGKPMAMMLLNANATVTICH 190 (283)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEe
Confidence 4679999999999999999999999988777655
No 304
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=93.10 E-value=0.11 Score=39.40 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=23.0
Q ss_pred ceEEEeccCcchHHHHHHHHHH-cCCceE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLR-CCPQML 80 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~-~g~~V~ 80 (84)
.+|.|.|||||+|+.+++.|.+ ...+|.
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~~f~v~ 34 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKETKFNIA 34 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCCCCCcc
Confidence 5799999999999999999985 444543
No 305
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=92.94 E-value=0.17 Score=38.26 Aligned_cols=31 Identities=32% Similarity=0.350 Sum_probs=27.5
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.++|.|.||.|.+|+.+...|.+.|++|..+
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~ 128 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRIL 128 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEEEe
Confidence 3679999999999999999999999887653
No 306
>KOG1208|consensus
Probab=92.73 E-value=0.17 Score=37.74 Aligned_cols=32 Identities=19% Similarity=0.205 Sum_probs=28.3
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
..++.++|||++.=||..+++.|..+|.+|..
T Consensus 33 ~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~ 64 (314)
T KOG1208|consen 33 LSGKVALVTGATSGIGFETARELALRGAHVVL 64 (314)
T ss_pred CCCcEEEEECCCCchHHHHHHHHHhCCCEEEE
Confidence 45689999999999999999999999977653
No 307
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=92.64 E-value=0.16 Score=35.95 Aligned_cols=25 Identities=24% Similarity=0.446 Sum_probs=22.3
Q ss_pred ccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 59 GATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 59 GatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
.++|.+|+++++.|.+.|++|..++
T Consensus 22 ~SSGgIG~AIA~~la~~Ga~Vvlv~ 46 (227)
T TIGR02114 22 HSTGHLGKIITETFLSAGHEVTLVT 46 (227)
T ss_pred CcccHHHHHHHHHHHHCCCEEEEEc
Confidence 5799999999999999999997653
No 308
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=92.57 E-value=0.2 Score=38.28 Aligned_cols=28 Identities=32% Similarity=0.392 Sum_probs=24.9
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
.+|.|.||+||-|..|++.|..+ ++|..
T Consensus 3 ~kV~IvGasGYtG~EL~rlL~~H-p~ve~ 30 (349)
T COG0002 3 IKVGIVGASGYTGLELLRLLAGH-PDVEL 30 (349)
T ss_pred ceEEEEcCCCCcHHHHHHHHhcC-CCeEE
Confidence 57999999999999999999987 77763
No 309
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=92.45 E-value=0.24 Score=36.52 Aligned_cols=26 Identities=31% Similarity=0.211 Sum_probs=23.2
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCc
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQ 78 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~ 78 (84)
++|.|.|++|++|++++..++..|+.
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~ 26 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVV 26 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCC
Confidence 47899999999999999999998754
No 310
>PRK06849 hypothetical protein; Provisional
Probab=92.28 E-value=0.24 Score=36.96 Aligned_cols=32 Identities=22% Similarity=0.186 Sum_probs=28.8
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.++|+|||++..+|-++++.|.+.|++|..+
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~ 34 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILA 34 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 35789999999999999999999999988765
No 311
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.12 E-value=0.32 Score=36.09 Aligned_cols=34 Identities=15% Similarity=0.274 Sum_probs=31.0
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
+.+++++|.|+++.+|+-+...|.+.|..|...|
T Consensus 156 l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~ 189 (286)
T PRK14175 156 LEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILH 189 (286)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEe
Confidence 4679999999999999999999999999888765
No 312
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=91.87 E-value=0.28 Score=35.65 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=27.2
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
.+-+|+||||+.=||..++++|.+.|-+|..
T Consensus 4 tgnTiLITGG~sGIGl~lak~f~elgN~VIi 34 (245)
T COG3967 4 TGNTILITGGASGIGLALAKRFLELGNTVII 34 (245)
T ss_pred cCcEEEEeCCcchhhHHHHHHHHHhCCEEEE
Confidence 4568999999999999999999999877753
No 313
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=91.73 E-value=0.29 Score=36.90 Aligned_cols=29 Identities=28% Similarity=0.370 Sum_probs=25.4
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
|+|+|+|+ |.+|+++++.|.+.|++|..|
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~~v~vi 29 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENNDVTVI 29 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCcEEEE
Confidence 46889987 999999999999999988755
No 314
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=91.55 E-value=0.42 Score=32.09 Aligned_cols=24 Identities=38% Similarity=0.364 Sum_probs=21.6
Q ss_pred eEEEeccCcchHHHHHHHHHHcCC
Q psy8179 54 TVFITGATGFLGSLLVEKLLRCCP 77 (84)
Q Consensus 54 ~vlitGatGfiG~~l~~~ll~~g~ 77 (84)
+++||||+|-+|..+++.|.+++.
T Consensus 2 tylitGG~gglg~~la~~La~~~~ 25 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGA 25 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-
T ss_pred EEEEECCccHHHHHHHHHHHHcCC
Confidence 589999999999999999999863
No 315
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=91.50 E-value=0.27 Score=37.33 Aligned_cols=31 Identities=32% Similarity=0.328 Sum_probs=26.0
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
++|-|.||||.+|+.+++.|.+..+.+..++
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~ 32 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELV 32 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEE
Confidence 4688999999999999999999667765443
No 316
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=91.45 E-value=0.4 Score=32.68 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=28.4
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++|.|+.+++|.-+++.|.++|.+|..+
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~ 74 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVC 74 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEE
Confidence 577999999998899999999999998776543
No 317
>KOG1200|consensus
Probab=91.38 E-value=0.42 Score=34.66 Aligned_cols=40 Identities=10% Similarity=0.171 Sum_probs=33.3
Q ss_pred hhhhhhccceEEEeccCcchHHHHHHHHHHcCCceEEEEC
Q psy8179 45 PIQEFYKDQTVFITGATGFLGSLLVEKLLRCCPQMLSLRF 84 (84)
Q Consensus 45 ~~~~~~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~~ 84 (84)
...+....+.+.+|||+.=||+.+.+.|.++|++|...++
T Consensus 7 ~~~~r~~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl 46 (256)
T KOG1200|consen 7 EVVQRLMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADL 46 (256)
T ss_pred HHHHHHhcceeEEecCCchHHHHHHHHHHhcCcEEEEeec
Confidence 3444556788999999999999999999999999877653
No 318
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=91.38 E-value=0.44 Score=32.45 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=27.7
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
+.+++++|.|.+..+|+-+...|.+++..|...|
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h 67 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICH 67 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCCCeEEecc
Confidence 5789999999999999999999999999888765
No 319
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.37 E-value=0.32 Score=36.74 Aligned_cols=32 Identities=16% Similarity=0.243 Sum_probs=27.7
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++++|+|++| +|...++.|.+.|++|...
T Consensus 3 ~~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~ 34 (447)
T PRK02472 3 YQNKKVLVLGLAK-SGYAAAKLLHKLGANVTVN 34 (447)
T ss_pred cCCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEE
Confidence 3567899999999 9999999999999988653
No 320
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=91.28 E-value=0.38 Score=30.21 Aligned_cols=29 Identities=34% Similarity=0.500 Sum_probs=23.6
Q ss_pred eEEEeccCcchHHHHHHHHHHc-CCceEEE
Q psy8179 54 TVFITGATGFLGSLLVEKLLRC-CPQMLSL 82 (84)
Q Consensus 54 ~vlitGatGfiG~~l~~~ll~~-g~~V~~I 82 (84)
++.+.|++|++|+.+++.+... +.++..+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av 30 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVAL 30 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEE
Confidence 3779999999999999999884 5566554
No 321
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=91.26 E-value=0.2 Score=38.36 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=19.6
Q ss_pred ceEEEeccCcchHHHHHHHHHHc
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRC 75 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~ 75 (84)
++|.|.|||||+|+.+++.++++
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~ 24 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEE 24 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhC
Confidence 46889999999999999966664
No 322
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=91.25 E-value=0.34 Score=35.33 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=25.2
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++|.|.| +|++|+.+...|.++|++|..+
T Consensus 3 ~~V~VIG-~G~mG~~iA~~la~~G~~V~v~ 31 (308)
T PRK06129 3 GSVAIIG-AGLIGRAWAIVFARAGHEVRLW 31 (308)
T ss_pred cEEEEEC-ccHHHHHHHHHHHHCCCeeEEE
Confidence 4688888 9999999999999999988653
No 323
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=91.14 E-value=0.43 Score=33.22 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=28.1
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++|+|.|| |-+|...++.|++.|++|+.|
T Consensus 8 l~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VI 39 (202)
T PRK06718 8 LSNKRVVIVGG-GKVAGRRAITLLKYGAHIVVI 39 (202)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEE
Confidence 56789999998 899999999999999888765
No 324
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.09 E-value=0.39 Score=35.90 Aligned_cols=34 Identities=12% Similarity=0.271 Sum_probs=30.7
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
+.++.|.+.|.+|.+|+-+...|+++|+.|...|
T Consensus 157 l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~ 190 (301)
T PRK14194 157 LTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVH 190 (301)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEC
Confidence 4689999999999999999999999999987654
No 325
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.93 E-value=0.42 Score=35.54 Aligned_cols=34 Identities=12% Similarity=0.244 Sum_probs=30.6
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
+.+++|.|.|.++.+|.-++..|++.|+.|...|
T Consensus 156 ~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~ 189 (296)
T PRK14188 156 LSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAH 189 (296)
T ss_pred CCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEEC
Confidence 4689999999999999999999999999987653
No 326
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=90.86 E-value=0.33 Score=31.88 Aligned_cols=24 Identities=38% Similarity=0.350 Sum_probs=21.6
Q ss_pred ceEEEeccCcchHHHHHHHHHHcC
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCC 76 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g 76 (84)
++|.|.|++|.+|++++..|...+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~ 24 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQG 24 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTT
T ss_pred CEEEEECCCChHHHHHHHHHHhCC
Confidence 468999999999999999999875
No 327
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=90.84 E-value=0.26 Score=37.72 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=23.7
Q ss_pred ceEEEeccCcchHHHHHHHHH-HcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLL-RCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll-~~g~~V~~I 82 (84)
++|.|.||||.+|+.+++.|. +....+..+
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~ 31 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRP 31 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccE
Confidence 368899999999999999998 555554443
No 328
>PRK08655 prephenate dehydrogenase; Provisional
Probab=90.81 E-value=0.4 Score=37.05 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=25.7
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
|+|.|.||+|.+|+.++..|.+.|++|..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v 29 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIV 29 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEE
Confidence 46899999999999999999999987754
No 329
>KOG4169|consensus
Probab=90.63 E-value=0.36 Score=35.47 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=29.1
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++++.+++||+.|=||..+.++|+++|..+..|
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i 35 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVI 35 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheee
Confidence 568999999999999999999999998766544
No 330
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=90.60 E-value=0.54 Score=31.08 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.0
Q ss_pred EEEeccCcchHHHHHHHHHHcC
Q psy8179 55 VFITGATGFLGSLLVEKLLRCC 76 (84)
Q Consensus 55 vlitGatGfiG~~l~~~ll~~g 76 (84)
|.|.|+||.||++.++-+.+..
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~ 22 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHP 22 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCT
T ss_pred CEEEcCCcHHHHHHHHHHHhCC
Confidence 5788999999999998887764
No 331
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=90.27 E-value=0.54 Score=30.10 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=24.4
Q ss_pred ceEEEeccCcchHHHHHHHHHH-cCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLR-CCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~-~g~~V~~I 82 (84)
++|.|.|++|-.|+.+++.+.+ .+.++..+
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~ 31 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGA 31 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEE
Confidence 4799999999999999999999 55554443
No 332
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=90.00 E-value=0.73 Score=36.34 Aligned_cols=25 Identities=16% Similarity=0.337 Sum_probs=21.3
Q ss_pred ccceEEEeccCcchHHHHHHHHHHc
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRC 75 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~ 75 (84)
..++|.|.|+||.||.+.++-+.++
T Consensus 56 ~~KkI~ILGSTGSIGtqtLdVI~~~ 80 (454)
T PLN02696 56 GPKPISLLGSTGSIGTQTLDIVAEN 80 (454)
T ss_pred CccEEEEecCCcHhhHHHHHHHHhC
Confidence 3478999999999999999877764
No 333
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=89.97 E-value=0.34 Score=36.61 Aligned_cols=30 Identities=20% Similarity=0.118 Sum_probs=25.8
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
.+|.| ||||-+|+.+++.|.+++..+..++
T Consensus 4 ~~iAi-GATg~VG~~~l~~Leer~fpv~~l~ 33 (322)
T PRK06901 4 LNIAI-AAEFELSEKLLEALEQSDLEIEQIS 33 (322)
T ss_pred ceEEE-ecCcHHHHHHHHHHHhcCCchhhee
Confidence 46889 9999999999999999888777555
No 334
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=89.81 E-value=0.64 Score=32.19 Aligned_cols=30 Identities=30% Similarity=0.464 Sum_probs=26.6
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQML 80 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~ 80 (84)
+.++++.|.|. |-+|+++++.|.+.|++|.
T Consensus 26 l~gk~v~I~G~-G~vG~~~A~~L~~~G~~Vv 55 (200)
T cd01075 26 LEGKTVAVQGL-GKVGYKLAEHLLEEGAKLI 55 (200)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEE
Confidence 56789999998 5799999999999999886
No 335
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.55 E-value=0.67 Score=34.38 Aligned_cols=34 Identities=12% Similarity=0.245 Sum_probs=30.6
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
+.+++++|.|.++.+|+-+...|.+++..|...|
T Consensus 156 l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~h 189 (285)
T PRK14189 156 LRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICH 189 (285)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEec
Confidence 3679999999999999999999999998887665
No 336
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=89.50 E-value=0.73 Score=32.44 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=26.9
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
.+.+++|+|++|.+|..+++.+...|.+|..
T Consensus 162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~ 192 (332)
T cd08259 162 KGDTVLVTGAGGGVGIHAIQLAKALGARVIA 192 (332)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCeEEE
Confidence 3568999999999999999999999887644
No 337
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.22 E-value=0.41 Score=35.68 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=20.6
Q ss_pred eEEEeccCcchHHHHHHHHHHcC
Q psy8179 54 TVFITGATGFLGSLLVEKLLRCC 76 (84)
Q Consensus 54 ~vlitGatGfiG~~l~~~ll~~g 76 (84)
+|.|+||+|.+|++++..|...+
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~ 24 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGE 24 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCC
Confidence 68999999999999999888754
No 338
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=89.17 E-value=0.57 Score=36.20 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=23.2
Q ss_pred ceEEEeccCcchHHHHHHHHHHcC-CceE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCC-PQML 80 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g-~~V~ 80 (84)
++|+|.|+ |+||+.++..|.+++ .+|.
T Consensus 2 ~~ilviGa-G~Vg~~va~~la~~~d~~V~ 29 (389)
T COG1748 2 MKILVIGA-GGVGSVVAHKLAQNGDGEVT 29 (389)
T ss_pred CcEEEECC-chhHHHHHHHHHhCCCceEE
Confidence 56888888 999999999999987 5654
No 339
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.11 E-value=0.63 Score=34.50 Aligned_cols=33 Identities=12% Similarity=0.235 Sum_probs=29.9
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.++.+.+.|.+|.+|.-+...|+++|+.|...
T Consensus 156 l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~ 188 (284)
T PRK14179 156 LEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLT 188 (284)
T ss_pred CCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEE
Confidence 467999999999999999999999999988764
No 340
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=89.08 E-value=0.72 Score=31.39 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=23.4
Q ss_pred eEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 54 TVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 54 ~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+|.|.|+ |..|+.++..++..|++|..+
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~~V~l~ 28 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGYEVTLY 28 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTSEEEEE
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCCcEEEE
Confidence 3667777 999999999999999998754
No 341
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=89.05 E-value=0.87 Score=30.24 Aligned_cols=34 Identities=24% Similarity=0.341 Sum_probs=31.0
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
+.++++.|.|.+.-+|..+...|.++|..|...+
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~ 59 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCD 59 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeC
Confidence 5789999999999999999999999999887765
No 342
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=88.87 E-value=0.65 Score=33.21 Aligned_cols=28 Identities=21% Similarity=0.308 Sum_probs=25.0
Q ss_pred eEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 54 TVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 54 ~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
++...||+|-+|+.+..+|...||+|..
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~i 29 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVII 29 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEE
Confidence 4667799999999999999999999865
No 343
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.71 E-value=0.9 Score=33.73 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=30.8
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
+.+++++|.|.+..+|+-+...|+++|..|...|
T Consensus 155 l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~h 188 (285)
T PRK14191 155 IKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCH 188 (285)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEe
Confidence 3679999999999999999999999999988765
No 344
>PRK06444 prephenate dehydrogenase; Provisional
Probab=88.40 E-value=0.75 Score=32.17 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=25.4
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQML 80 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~ 80 (84)
+++.|.||+|=.|+.+.+.|.+.|+.|.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~ 28 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY 28 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE
Confidence 4689999999999999999999999874
No 345
>KOG1207|consensus
Probab=88.40 E-value=0.73 Score=33.00 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=30.4
Q ss_pred hhccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 49 FYKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 49 ~~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++.++.|++||+.--||+.++..|.+.|.+|..+
T Consensus 4 ~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAv 37 (245)
T KOG1207|consen 4 SLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAV 37 (245)
T ss_pred cccceEEEeecccccccHHHHHHHHhcCCEEEEE
Confidence 4568899999999999999999999999988765
No 346
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=88.17 E-value=0.86 Score=33.92 Aligned_cols=25 Identities=28% Similarity=0.141 Sum_probs=21.6
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCC
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCP 77 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~ 77 (84)
++|.|.|++|.+|++++..|...+.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~ 25 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPL 25 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC
Confidence 4689999999999999999887753
No 347
>PRK05086 malate dehydrogenase; Provisional
Probab=88.11 E-value=0.71 Score=34.14 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=19.5
Q ss_pred ceEEEeccCcchHHHHHHHHHH
Q psy8179 53 QTVFITGATGFLGSLLVEKLLR 74 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~ 74 (84)
+++.|.||+|.+|++++..+..
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~ 22 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKT 22 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHc
Confidence 4789999999999999988855
No 348
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.95 E-value=1.1 Score=33.37 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=30.8
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
+.+++++|.|.+..+|+-+...|.+++..|...|
T Consensus 162 l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~h 195 (287)
T PRK14176 162 IEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCH 195 (287)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEe
Confidence 3679999999999999999999999998888766
No 349
>KOG1014|consensus
Probab=87.73 E-value=0.85 Score=34.40 Aligned_cols=30 Identities=20% Similarity=0.237 Sum_probs=27.0
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.-.+|||||.=||+..++.|.++|.+|..|
T Consensus 50 ~WAVVTGaTDGIGKayA~eLAkrG~nvvLI 79 (312)
T KOG1014|consen 50 SWAVVTGATDGIGKAYARELAKRGFNVVLI 79 (312)
T ss_pred CEEEEECCCCcchHHHHHHHHHcCCEEEEE
Confidence 568999999999999999999999997654
No 350
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=87.66 E-value=0.98 Score=35.09 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=26.8
Q ss_pred cceEEEeccCcchHHH--HHHHHHHcCCceEEEE
Q psy8179 52 DQTVFITGATGFLGSL--LVEKLLRCCPQMLSLR 83 (84)
Q Consensus 52 ~~~vlitGatGfiG~~--l~~~ll~~g~~V~~I~ 83 (84)
+|+++|||+++-+|.. +++.| +.|.+|..++
T Consensus 41 gK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~ 73 (398)
T PRK13656 41 PKKVLVIGASSGYGLASRIAAAF-GAGADTLGVF 73 (398)
T ss_pred CCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEe
Confidence 4889999999999999 89999 9998876653
No 351
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.61 E-value=1.2 Score=33.01 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=30.7
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
+.+++++|.|.+..+|+-+...|++++..|...|
T Consensus 157 l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~h 190 (285)
T PRK10792 157 TYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCH 190 (285)
T ss_pred CCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEE
Confidence 3579999999999999999999999998888765
No 352
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.36 E-value=1.1 Score=33.15 Aligned_cols=34 Identities=15% Similarity=0.251 Sum_probs=30.7
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
+.++.++|.|.+..+|+-+...|.+++..|...|
T Consensus 156 l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~ch 189 (282)
T PRK14180 156 TEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCH 189 (282)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEc
Confidence 4689999999999999999999999998887765
No 353
>PLN00106 malate dehydrogenase
Probab=87.23 E-value=0.79 Score=34.31 Aligned_cols=24 Identities=25% Similarity=0.153 Sum_probs=21.4
Q ss_pred ceEEEeccCcchHHHHHHHHHHcC
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCC 76 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g 76 (84)
.+|.|+|++|.||+.+...|...+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~ 42 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNP 42 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC
Confidence 579999999999999999998654
No 354
>KOG4022|consensus
Probab=87.15 E-value=1.2 Score=31.62 Aligned_cols=31 Identities=32% Similarity=0.323 Sum_probs=28.0
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
.+|+|-|+-|-+|+.++++|..++|.|..|-
T Consensus 4 grVivYGGkGALGSacv~~FkannywV~siD 34 (236)
T KOG4022|consen 4 GRVIVYGGKGALGSACVEFFKANNYWVLSID 34 (236)
T ss_pred ceEEEEcCcchHhHHHHHHHHhcCeEEEEEe
Confidence 5799999999999999999999999887663
No 355
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=86.80 E-value=1.3 Score=31.68 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=22.9
Q ss_pred ceEEEeccCcchHHHHHHHHHHc-CCceEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRC-CPQMLS 81 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~-g~~V~~ 81 (84)
++|.|.|++|.+|+.+++.+.+. +.++..
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elva 31 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVA 31 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEE
Confidence 57999999999999999888764 344444
No 356
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.73 E-value=1.4 Score=32.60 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=30.6
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
+.+++++|.|.+..+|+-+...|++++..|...|
T Consensus 156 l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~ch 189 (284)
T PRK14190 156 ISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCH 189 (284)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEe
Confidence 4689999999999999999999999988887765
No 357
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.64 E-value=1.2 Score=33.20 Aligned_cols=34 Identities=15% Similarity=0.191 Sum_probs=30.7
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
+.++.++|.|.+..+|+-+...|.+++..|...|
T Consensus 156 l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~h 189 (297)
T PRK14186 156 IAGKKAVVVGRSILVGKPLALMLLAANATVTIAH 189 (297)
T ss_pred CCCCEEEEECCCccchHHHHHHHHHCCCEEEEeC
Confidence 4679999999999999999999999998887765
No 358
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=86.46 E-value=1.4 Score=32.06 Aligned_cols=30 Identities=13% Similarity=0.102 Sum_probs=25.3
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCc-eEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQ-MLS 81 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~-V~~ 81 (84)
++++++|+|+ |=+|+.++..|...|.+ |..
T Consensus 125 ~~k~vlI~GA-GGagrAia~~La~~G~~~V~I 155 (289)
T PRK12548 125 KGKKLTVIGA-GGAATAIQVQCALDGAKEITI 155 (289)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEE
Confidence 4678999999 78999999999999876 543
No 359
>KOG1611|consensus
Probab=86.46 E-value=1 Score=32.94 Aligned_cols=31 Identities=35% Similarity=0.433 Sum_probs=25.6
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
.+.++||||..=||-.++++|++. ..+..|+
T Consensus 3 pksv~ItGaNRGIGlgLVk~llk~-~~i~~ii 33 (249)
T KOG1611|consen 3 PKSVFITGANRGIGLGLVKELLKD-KGIEVII 33 (249)
T ss_pred CccEEEeccCcchhHHHHHHHhcC-CCcEEEE
Confidence 356999999999999999999975 5666554
No 360
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=86.40 E-value=0.85 Score=28.18 Aligned_cols=32 Identities=19% Similarity=0.327 Sum_probs=26.3
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.++++|+|.|+ |=+|.+=++.|++.|.+|+.|
T Consensus 5 l~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~vi 36 (103)
T PF13241_consen 5 LKGKRVLVVGG-GPVAARKARLLLEAGAKVTVI 36 (103)
T ss_dssp -TT-EEEEEEE-SHHHHHHHHHHCCCTBEEEEE
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEE
Confidence 46789999998 889999999999999887765
No 361
>KOG1209|consensus
Probab=86.35 E-value=1.1 Score=32.99 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=25.6
Q ss_pred cceEEEec-cCcchHHHHHHHHHHcCCceEE
Q psy8179 52 DQTVFITG-ATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 52 ~~~vlitG-atGfiG~~l~~~ll~~g~~V~~ 81 (84)
.+.|+||| +.|=||..+.+.|.++|+.|..
T Consensus 7 ~k~VlItgcs~GGIG~ala~ef~~~G~~V~A 37 (289)
T KOG1209|consen 7 PKKVLITGCSSGGIGYALAKEFARNGYLVYA 37 (289)
T ss_pred CCeEEEeecCCcchhHHHHHHHHhCCeEEEE
Confidence 36688887 7899999999999999998753
No 362
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=86.33 E-value=1.4 Score=32.59 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=26.0
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
+.+|+|+||+|-+|+..++.+...|+.+..
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~ 172 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGATVVA 172 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCcEEE
Confidence 678999999999999999999988865543
No 363
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=86.22 E-value=1.4 Score=30.18 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=22.4
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
|+|.|. |.||+|-.++..|.+.|++|..+
T Consensus 1 M~I~Vi-GlGyvGl~~A~~lA~~G~~V~g~ 29 (185)
T PF03721_consen 1 MKIAVI-GLGYVGLPLAAALAEKGHQVIGV 29 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTSEEEEE
T ss_pred CEEEEE-CCCcchHHHHHHHHhCCCEEEEE
Confidence 345555 79999999999999999999765
No 364
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=86.08 E-value=0.87 Score=33.94 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.4
Q ss_pred ceEEEeccCcchHHHHHHHHHHcC
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCC 76 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g 76 (84)
.+|.|+|++|.+|++++..|+..+
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~ 26 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGE 26 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcc
Confidence 579999999999999999988754
No 365
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=86.04 E-value=1.7 Score=30.04 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=26.0
Q ss_pred hhhhccceEEEeccCcchHHHHHHHHHHcCCc
Q psy8179 47 QEFYKDQTVFITGATGFLGSLLVEKLLRCCPQ 78 (84)
Q Consensus 47 ~~~~~~~~vlitGatGfiG~~l~~~ll~~g~~ 78 (84)
....+..+|+|.|..| +|+++++.|...|..
T Consensus 14 q~~L~~s~VlviG~gg-lGsevak~L~~~GVg 44 (198)
T cd01485 14 QNKLRSAKVLIIGAGA-LGAEIAKNLVLAGID 44 (198)
T ss_pred HHHHhhCcEEEECCCH-HHHHHHHHHHHcCCC
Confidence 3445668899999999 999999999998854
No 366
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.02 E-value=1.4 Score=32.73 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=30.4
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
+.++.++|.|.+..+|+-+...|++++..|...|
T Consensus 153 l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtich 186 (287)
T PRK14173 153 LAGKEVVVVGRSNIVGKPLAALLLREDATVTLAH 186 (287)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeC
Confidence 3579999999999999999999999988887665
No 367
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=85.88 E-value=1.5 Score=31.60 Aligned_cols=31 Identities=26% Similarity=0.330 Sum_probs=26.2
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
.+.+|+|+|++|-+|..+++.+...|.+|..
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~ 181 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVG 181 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEE
Confidence 3578999999999999999888888877643
No 368
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.74 E-value=1.5 Score=32.50 Aligned_cols=34 Identities=15% Similarity=0.257 Sum_probs=30.4
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
+.+++++|.|.+..+|+-+...|.+++..|...|
T Consensus 156 l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~ch 189 (278)
T PRK14172 156 IEGKEVVVIGRSNIVGKPVAQLLLNENATVTICH 189 (278)
T ss_pred CCCCEEEEECCCccchHHHHHHHHHCCCEEEEeC
Confidence 3689999999999999999999999988887665
No 369
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=85.39 E-value=1.8 Score=29.88 Aligned_cols=30 Identities=17% Similarity=0.358 Sum_probs=25.2
Q ss_pred hhhccceEEEeccCcchHHHHHHHHHHcCCc
Q psy8179 48 EFYKDQTVFITGATGFLGSLLVEKLLRCCPQ 78 (84)
Q Consensus 48 ~~~~~~~vlitGatGfiG~~l~~~ll~~g~~ 78 (84)
.....++|+|.|+.| +|+++++.|...|..
T Consensus 17 ~~L~~s~VlIiG~gg-lG~evak~La~~GVg 46 (197)
T cd01492 17 KRLRSARILLIGLKG-LGAEIAKNLVLSGIG 46 (197)
T ss_pred HHHHhCcEEEEcCCH-HHHHHHHHHHHcCCC
Confidence 445678899999888 999999999998854
No 370
>PTZ00325 malate dehydrogenase; Provisional
Probab=85.37 E-value=1.3 Score=33.06 Aligned_cols=26 Identities=31% Similarity=0.201 Sum_probs=21.9
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcC
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCC 76 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g 76 (84)
+..+|.|+|++|.||+.+...|...+
T Consensus 7 ~~~KI~IiGaaG~VGs~~a~~l~~~~ 32 (321)
T PTZ00325 7 KMFKVAVLGAAGGIGQPLSLLLKQNP 32 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHhcCC
Confidence 34579999999999999999888654
No 371
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=85.35 E-value=2.3 Score=27.23 Aligned_cols=30 Identities=23% Similarity=0.289 Sum_probs=24.1
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcC-CceE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCC-PQML 80 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g-~~V~ 80 (84)
.+.++++|+|+ |.+|+.+++.|.+.+ ++|.
T Consensus 17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~ 47 (155)
T cd01065 17 LKGKKVLILGA-GGAARAVAYALAELGAAKIV 47 (155)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCCEEE
Confidence 34678999997 899999999999885 4444
No 372
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=85.34 E-value=0.93 Score=33.77 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=17.3
Q ss_pred EEEeccCcchHHHHHHHHHHcC
Q psy8179 55 VFITGATGFLGSLLVEKLLRCC 76 (84)
Q Consensus 55 vlitGatGfiG~~l~~~ll~~g 76 (84)
|+|.|+ |++|+.+++.|.++.
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~ 21 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRG 21 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTT
T ss_pred CEEEcC-cHHHHHHHHHHhcCC
Confidence 688999 999999999999984
No 373
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.15 E-value=1.5 Score=32.66 Aligned_cols=34 Identities=12% Similarity=0.191 Sum_probs=30.9
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
+.++.++|.|.+..+|+-+...|++++..|...|
T Consensus 158 l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~ch 191 (294)
T PRK14187 158 LSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVH 191 (294)
T ss_pred CCCCEEEEECCCccchHHHHHHHhhCCCEEEEeC
Confidence 4689999999999999999999999998888765
No 374
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.14 E-value=1.6 Score=32.43 Aligned_cols=34 Identities=12% Similarity=0.226 Sum_probs=30.6
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
+.+++++|.|.+..+|+-+...|.+++..|...|
T Consensus 155 l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtich 188 (284)
T PRK14170 155 IEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAH 188 (284)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeC
Confidence 4689999999999999999999999988887765
No 375
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.02 E-value=1.6 Score=32.30 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=30.5
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
+.+++++|.|.+..+|+-+...|++++..|+..|
T Consensus 155 l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~ch 188 (282)
T PRK14166 155 LEGKDAVIIGASNIVGRPMATMLLNAGATVSVCH 188 (282)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeC
Confidence 4679999999999999999999999988887665
No 376
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=84.94 E-value=1.8 Score=28.91 Aligned_cols=32 Identities=16% Similarity=0.167 Sum_probs=26.9
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.++++|+|.|| |=+|...++.|++.|++|+.|
T Consensus 11 l~~~~vlVvGG-G~va~rka~~Ll~~ga~V~VI 42 (157)
T PRK06719 11 LHNKVVVIIGG-GKIAYRKASGLKDTGAFVTVV 42 (157)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEE
Confidence 46788888874 778999999999999998765
No 377
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.92 E-value=1.6 Score=32.32 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=30.2
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
+.+++++|.|.+..+|+-+...|++++..|...|
T Consensus 155 l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~h 188 (281)
T PRK14183 155 VKGKDVCVVGASNIVGKPMAALLLNANATVDICH 188 (281)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeC
Confidence 4689999999999999999999999988887654
No 378
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=84.86 E-value=1.7 Score=30.85 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=24.4
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++|.|.|+ |-+|+.+...|.+.|++|..+
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~~g~~V~~~ 29 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQAGHDVTLV 29 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEE
Confidence 35788886 999999999999999988654
No 379
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.67 E-value=1.7 Score=32.26 Aligned_cols=34 Identities=12% Similarity=0.164 Sum_probs=30.5
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
+.++.++|.|.+..+|+-+...|++++..|...|
T Consensus 157 l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~ch 190 (284)
T PRK14177 157 VTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCH 190 (284)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeC
Confidence 4679999999999999999999999988887765
No 380
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.55 E-value=1.8 Score=32.09 Aligned_cols=34 Identities=15% Similarity=0.217 Sum_probs=30.4
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
+.++.++|.|.+..+|+-+...|++++..|...|
T Consensus 154 l~Gk~vvViGrS~iVGkPla~lL~~~~atVtich 187 (282)
T PRK14169 154 VAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAH 187 (282)
T ss_pred CCCCEEEEECCCccchHHHHHHHHHCCCEEEEEC
Confidence 4679999999999999999999999988887655
No 381
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=84.51 E-value=1.9 Score=30.80 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=25.9
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
.+.+|+|.|++|-+|...++.+...|.+|..
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~ 168 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVG 168 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEE
Confidence 3578999999999999999888888876543
No 382
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=84.39 E-value=1.9 Score=32.42 Aligned_cols=30 Identities=37% Similarity=0.525 Sum_probs=25.1
Q ss_pred hhhhccceEEEeccCcchHHHHHHHHHHcCC
Q psy8179 47 QEFYKDQTVFITGATGFLGSLLVEKLLRCCP 77 (84)
Q Consensus 47 ~~~~~~~~vlitGatGfiG~~l~~~ll~~g~ 77 (84)
...+...+|+|.|+ |.+|+.++..|...|.
T Consensus 19 Q~~L~~~~VlVvG~-GglGs~va~~La~aGv 48 (339)
T PRK07688 19 QQKLREKHVLIIGA-GALGTANAEMLVRAGV 48 (339)
T ss_pred HHHhcCCcEEEECC-CHHHHHHHHHHHHcCC
Confidence 34456778999987 8899999999999886
No 383
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=84.35 E-value=1.8 Score=32.60 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=26.0
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.++++|.|+ |.+|+.+++.|.+.|++|..|
T Consensus 231 ~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vi 260 (453)
T PRK09496 231 VKRVMIVGG-GNIGYYLAKLLEKEGYSVKLI 260 (453)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEE
Confidence 467999998 999999999999988888654
No 384
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=84.27 E-value=1.8 Score=33.56 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=22.5
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCc
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQ 78 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~ 78 (84)
+++.|.|+||.||.+.+.-+.+++.+
T Consensus 2 k~i~iLGSTGSIG~qtLdVi~~~p~~ 27 (385)
T COG0743 2 KKLTILGSTGSIGTQTLDVIRRNPDK 27 (385)
T ss_pred ceEEEEecCCchhHHHHHHHHhCCCc
Confidence 57899999999999999988887555
No 385
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.18 E-value=2.1 Score=32.81 Aligned_cols=32 Identities=19% Similarity=0.342 Sum_probs=26.8
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++|+|.|+ |.+|..++..|.+.|++|..+
T Consensus 14 ~~~~~v~viG~-G~~G~~~A~~L~~~G~~V~~~ 45 (480)
T PRK01438 14 WQGLRVVVAGL-GVSGFAAADALLELGARVTVV 45 (480)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEE
Confidence 45678999986 789999999999999988654
No 386
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=84.17 E-value=0.99 Score=33.66 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.2
Q ss_pred eEEEeccCcchHHHHHHHHHHcC
Q psy8179 54 TVFITGATGFLGSLLVEKLLRCC 76 (84)
Q Consensus 54 ~vlitGatGfiG~~l~~~ll~~g 76 (84)
+|.|+|++|.+|++++..|...+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~ 23 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGR 23 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhcc
Confidence 48899999999999999988743
No 387
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=84.15 E-value=2.1 Score=30.30 Aligned_cols=31 Identities=26% Similarity=0.327 Sum_probs=26.0
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
.+.+++|.||+|-+|..+++.+...|.+|..
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~ 173 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIG 173 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEE
Confidence 4578999999999999998888888877643
No 388
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=84.14 E-value=1.9 Score=30.98 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=24.5
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++|.|.|+ |.+|+.++..|.+.|++|..+
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~~V~~~ 30 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGFQTTLV 30 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCCcEEEE
Confidence 35777777 999999999999999998753
No 389
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=83.79 E-value=1.3 Score=33.07 Aligned_cols=24 Identities=29% Similarity=0.349 Sum_probs=21.5
Q ss_pred ceEEEeccCcchHHHHHHHHHHcC
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCC 76 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g 76 (84)
.+|.|.|++|++|++++..|+..+
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~ 27 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGE 27 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCC
Confidence 469999999999999999998775
No 390
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=83.78 E-value=1.9 Score=32.02 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=23.2
Q ss_pred eEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 54 TVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 54 ~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.|+|.| .|++|..++.+|.+.|.+|..+
T Consensus 3 ~vvIIG-aG~~G~~~A~~La~~g~~V~vl 30 (410)
T PRK12409 3 HIAVIG-AGITGVTTAYALAQRGYQVTVF 30 (410)
T ss_pred EEEEEC-CCHHHHHHHHHHHHCCCeEEEE
Confidence 466666 5999999999999999888654
No 391
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=83.75 E-value=1.1 Score=29.33 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=26.6
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
.++|-|.|+ |=+|.++.+.|.+.|+.|..||
T Consensus 10 ~l~I~iIGa-GrVG~~La~aL~~ag~~v~~v~ 40 (127)
T PF10727_consen 10 RLKIGIIGA-GRVGTALARALARAGHEVVGVY 40 (127)
T ss_dssp --EEEEECT-SCCCCHHHHHHHHTTSEEEEES
T ss_pred ccEEEEECC-CHHHHHHHHHHHHCCCeEEEEE
Confidence 467888887 9999999999999999998886
No 392
>PRK05442 malate dehydrogenase; Provisional
Probab=83.71 E-value=1.3 Score=33.16 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.5
Q ss_pred cceEEEeccCcchHHHHHHHHHHcC
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCC 76 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g 76 (84)
..+|.|+|++|.+|++++..|...+
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~ 28 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGD 28 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhh
Confidence 4579999999999999999888754
No 393
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=83.64 E-value=2 Score=27.27 Aligned_cols=31 Identities=16% Similarity=0.351 Sum_probs=23.3
Q ss_pred ceEEEeccC---cchHHHHHHHHHHcCCceEEEE
Q psy8179 53 QTVFITGAT---GFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 53 ~~vlitGat---GfiG~~l~~~ll~~g~~V~~I~ 83 (84)
+++.|.|++ +-.|..+++.|.+.|++|..|+
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vn 34 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVN 34 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEES
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEEC
Confidence 468899987 7789999999999998887764
No 394
>KOG1496|consensus
Probab=83.63 E-value=0.87 Score=34.03 Aligned_cols=22 Identities=36% Similarity=0.578 Sum_probs=19.9
Q ss_pred ceEEEeccCcchHHHHHHHHHH
Q psy8179 53 QTVFITGATGFLGSLLVEKLLR 74 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~ 74 (84)
-+|+||||+|-||.+++..+.+
T Consensus 5 irVlVtGAAGqI~ysll~~ia~ 26 (332)
T KOG1496|consen 5 IRVLVTGAAGQIGYSLLPMIAR 26 (332)
T ss_pred eEEEeecccchhhHHHHHHHcC
Confidence 4799999999999999998865
No 395
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.46 E-value=2 Score=31.96 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=30.3
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
+.++.++|.|.+..+|+-+...|++++..|...|
T Consensus 157 l~GK~vvViGrS~iVGkPla~lL~~~~ATVtich 190 (288)
T PRK14171 157 LTGKNVVIIGRSNIVGKPLSALLLKENCSVTICH 190 (288)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeC
Confidence 4679999999999999999999999988887655
No 396
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=83.44 E-value=2 Score=31.83 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=22.9
Q ss_pred eEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 54 TVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 54 ~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.|+|.|| |++|..++..|.+.|.+|..+
T Consensus 2 ~v~IVG~-Gi~Gls~A~~l~~~g~~V~vl 29 (416)
T PRK00711 2 RVVVLGS-GVIGVTSAWYLAQAGHEVTVI 29 (416)
T ss_pred EEEEECC-cHHHHHHHHHHHHCCCEEEEE
Confidence 4667664 999999999999999887654
No 397
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=83.43 E-value=2.2 Score=33.80 Aligned_cols=35 Identities=14% Similarity=0.167 Sum_probs=30.8
Q ss_pred hhccceEEEec----------------cCcchHHHHHHHHHHcCCceEEEE
Q psy8179 49 FYKDQTVFITG----------------ATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 49 ~~~~~~vlitG----------------atGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
.+.+++|+||+ .||-.|..|++.+...|.+|..|+
T Consensus 253 ~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~ 303 (475)
T PRK13982 253 PLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLIS 303 (475)
T ss_pred ccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEe
Confidence 36788999996 678999999999999999998875
No 398
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=83.36 E-value=2.2 Score=30.72 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=25.2
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcC-CceEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCC-PQMLS 81 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g-~~V~~ 81 (84)
..+++++|+|+ |-+|+.++..|...| .+|..
T Consensus 121 ~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v 152 (278)
T PRK00258 121 LKGKRILILGA-GGAARAVILPLLDLGVAEITI 152 (278)
T ss_pred CCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEE
Confidence 45678999997 999999999999988 45543
No 399
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=83.26 E-value=0.97 Score=35.57 Aligned_cols=23 Identities=30% Similarity=0.224 Sum_probs=20.8
Q ss_pred cceEEEeccCcchHHHHHHHHHH
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLR 74 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~ 74 (84)
..+|+||||+|.||.+++..+.+
T Consensus 123 p~~V~vtgAag~i~Y~l~~~ia~ 145 (452)
T cd05295 123 PLQVCITNASAPLCYHLIPSLAS 145 (452)
T ss_pred ceEEEEecCcHHHHHHHHHHHhC
Confidence 35799999999999999999876
No 400
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=82.81 E-value=4.5 Score=26.05 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=25.1
Q ss_pred hhccceEEEeccCcchHHHHHHHHHHcCCc
Q psy8179 49 FYKDQTVFITGATGFLGSLLVEKLLRCCPQ 78 (84)
Q Consensus 49 ~~~~~~vlitGatGfiG~~l~~~ll~~g~~ 78 (84)
.+++++++|.|+ |-.|+.++..|...|.+
T Consensus 9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~~ 37 (135)
T PF01488_consen 9 DLKGKRVLVIGA-GGAARAVAAALAALGAK 37 (135)
T ss_dssp TGTTSEEEEESS-SHHHHHHHHHHHHTTSS
T ss_pred CcCCCEEEEECC-HHHHHHHHHHHHHcCCC
Confidence 467899999998 55899999999999876
No 401
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=82.64 E-value=2.4 Score=31.74 Aligned_cols=34 Identities=15% Similarity=0.259 Sum_probs=30.8
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
+.+++++|.|.+..+|+-+...|.+++..|...|
T Consensus 165 l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvch 198 (299)
T PLN02516 165 IKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVH 198 (299)
T ss_pred CCCCEEEEECCCccchHHHHHHHHHCCCEEEEeC
Confidence 4679999999999999999999999999888765
No 402
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=82.17 E-value=2.7 Score=30.12 Aligned_cols=29 Identities=28% Similarity=0.251 Sum_probs=24.6
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCC-ceEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCP-QMLS 81 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~-~V~~ 81 (84)
.+|+|.||+|-+|...++.+...|. +|..
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~ 185 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVG 185 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEE
Confidence 6899999999999999988887887 5544
No 403
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.14 E-value=2.6 Score=31.29 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=30.4
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
+.++.++|.|.+..+|+-+...|.+++..|...|
T Consensus 155 l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtich 188 (282)
T PRK14182 155 PKGKRALVVGRSNIVGKPMAMMLLERHATVTIAH 188 (282)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeC
Confidence 3689999999999999999999999988887665
No 404
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=82.13 E-value=4.4 Score=24.01 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=23.6
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCc
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQ 78 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~ 78 (84)
+.+++++|.|+ |-.|+.++..+.+.+..
T Consensus 21 ~~~~~v~i~G~-G~~g~~~a~~l~~~~~~ 48 (86)
T cd05191 21 LKGKTVVVLGA-GEVGKGIAKLLADEGGK 48 (86)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCC
Confidence 45678999999 99999999999998533
No 405
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=82.08 E-value=2.3 Score=31.66 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=30.8
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
.+++++.|.|.+-++|+-+...|+..++.|..-|
T Consensus 154 l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcH 187 (283)
T COG0190 154 LRGKNVVVVGRSNIVGKPLALLLLNANATVTVCH 187 (283)
T ss_pred CCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEc
Confidence 3679999999999999999999999999988765
No 406
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=81.93 E-value=2.1 Score=40.04 Aligned_cols=31 Identities=13% Similarity=0.125 Sum_probs=26.5
Q ss_pred ccceEEEeccCcchHHHHHHHHHHc-CCceEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRC-CPQMLS 81 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~-g~~V~~ 81 (84)
.++.++||||++-||..++++|.++ |.+|..
T Consensus 1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL 2027 (2582)
T TIGR02813 1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFIL 2027 (2582)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEE
Confidence 5689999999999999999999987 466543
No 407
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=81.82 E-value=3.1 Score=28.59 Aligned_cols=31 Identities=16% Similarity=0.281 Sum_probs=26.4
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
.+.+++|+|++|-+|..+.+.+...|.+|..
T Consensus 139 ~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~ 169 (323)
T cd05276 139 AGETVLIHGGASGVGTAAIQLAKALGARVIA 169 (323)
T ss_pred CCCEEEEEcCcChHHHHHHHHHHHcCCEEEE
Confidence 3578999999999999999999988877643
No 408
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=81.82 E-value=2 Score=33.30 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=22.1
Q ss_pred ceEEEeccCcchHHHHHHHHHHc--CCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRC--CPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~--g~~V~~I 82 (84)
+++.|.|+||.||.+.+.-+.+. .++|..+
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~L 33 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHNPDHFQVVAL 33 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhCccccEEEEE
Confidence 57999999999999988765543 2455443
No 409
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.81 E-value=2.6 Score=31.28 Aligned_cols=34 Identities=15% Similarity=0.054 Sum_probs=29.3
Q ss_pred hccceEEEeccCcchHHHHHHHHHH--cCCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLR--CCPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~--~g~~V~~I~ 83 (84)
+.++.++|.|.+..+|+-+...|++ ++..|...|
T Consensus 156 l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvch 191 (284)
T PRK14193 156 LAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCH 191 (284)
T ss_pred CCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeC
Confidence 3579999999999999999999998 677777655
No 410
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=81.72 E-value=2.3 Score=31.70 Aligned_cols=24 Identities=29% Similarity=0.148 Sum_probs=20.7
Q ss_pred eEEEeccCcchHHHHHHHHHHcCC
Q psy8179 54 TVFITGATGFLGSLLVEKLLRCCP 77 (84)
Q Consensus 54 ~vlitGatGfiG~~l~~~ll~~g~ 77 (84)
+|.|.|++|.+|++++..|...+.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~ 24 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPY 24 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCC
Confidence 378999999999999999887754
No 411
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=81.63 E-value=2.7 Score=30.54 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=25.2
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.|+|.| .|++|...+.+|.+.|++|..+
T Consensus 5 ~~vvVIG-gGi~Gls~A~~La~~G~~V~vi 33 (387)
T COG0665 5 MDVVIIG-GGIVGLSAAYYLAERGADVTVL 33 (387)
T ss_pred ceEEEEC-CcHHHHHHHHHHHHcCCEEEEE
Confidence 5688888 9999999999999999877654
No 412
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=81.63 E-value=3.2 Score=28.01 Aligned_cols=30 Identities=23% Similarity=0.370 Sum_probs=24.9
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
.+.+++|+|+++ +|..+++.+...|.+|..
T Consensus 134 ~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~ 163 (271)
T cd05188 134 PGDTVLVLGAGG-VGLLAAQLAKAAGARVIV 163 (271)
T ss_pred CCCEEEEECCCH-HHHHHHHHHHHcCCeEEE
Confidence 457899999999 999999888888876643
No 413
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=81.53 E-value=3.3 Score=31.09 Aligned_cols=31 Identities=32% Similarity=0.428 Sum_probs=25.6
Q ss_pred hhhhccceEEEeccCcchHHHHHHHHHHcCCc
Q psy8179 47 QEFYKDQTVFITGATGFLGSLLVEKLLRCCPQ 78 (84)
Q Consensus 47 ~~~~~~~~vlitGatGfiG~~l~~~ll~~g~~ 78 (84)
...++.++|+|.|+.| +|+++++.|...|..
T Consensus 19 Q~~L~~~~VlIiG~Gg-lGs~va~~La~aGvg 49 (338)
T PRK12475 19 QRKIREKHVLIVGAGA-LGAANAEALVRAGIG 49 (338)
T ss_pred HHhhcCCcEEEECCCH-HHHHHHHHHHHcCCC
Confidence 4446678899999766 999999999999863
No 414
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.48 E-value=2.9 Score=29.85 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=24.2
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++|.|.|+ |++|..++..++..|++|..+
T Consensus 4 ~kI~VIG~-G~mG~~ia~~la~~g~~V~~~ 32 (282)
T PRK05808 4 QKIGVIGA-GTMGNGIAQVCAVAGYDVVMV 32 (282)
T ss_pred cEEEEEcc-CHHHHHHHHHHHHCCCceEEE
Confidence 35777765 999999999999999988754
No 415
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=81.40 E-value=2.9 Score=30.66 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=25.9
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
.+.+|+|.|++|-+|...++.+...|.+|..
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~ 188 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVG 188 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEE
Confidence 3578999999999999999888888876543
No 416
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=81.40 E-value=3.4 Score=29.28 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=30.8
Q ss_pred hhccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 49 FYKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 49 ~~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.+.+++++|.|.+..+|+-+...|++++..|...
T Consensus 59 ~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~ 92 (197)
T cd01079 59 RLYGKTITIINRSEVVGRPLAALLANDGARVYSV 92 (197)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEE
Confidence 3678999999999999999999999999888766
No 417
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=81.36 E-value=2.9 Score=29.65 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=27.1
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++|.|.| .|-+|+++++.|.+.|.+|..|
T Consensus 29 l~~~~v~I~G-~G~VG~~~a~~L~~~g~~vv~v 60 (227)
T cd01076 29 LAGARVAIQG-FGNVGSHAARFLHEAGAKVVAV 60 (227)
T ss_pred ccCCEEEEEC-CCHHHHHHHHHHHHCCCEEEEE
Confidence 4678888887 7999999999999998887654
No 418
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=81.20 E-value=2.6 Score=30.22 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=23.4
Q ss_pred eEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 54 TVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 54 ~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+|.|.| .|.+|..+...|.+.|++|..+
T Consensus 2 ~I~IIG-~G~mG~sla~~L~~~g~~V~~~ 29 (279)
T PRK07417 2 KIGIVG-LGLIGGSLGLDLRSLGHTVYGV 29 (279)
T ss_pred eEEEEe-ecHHHHHHHHHHHHCCCEEEEE
Confidence 577776 8999999999999998887644
No 419
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=80.96 E-value=1.8 Score=33.40 Aligned_cols=25 Identities=40% Similarity=0.571 Sum_probs=22.4
Q ss_pred eEEEeccCcchHHHHHHHHHHcCCc
Q psy8179 54 TVFITGATGFLGSLLVEKLLRCCPQ 78 (84)
Q Consensus 54 ~vlitGatGfiG~~l~~~ll~~g~~ 78 (84)
.++|-||+||.|.-++++|...|.+
T Consensus 8 d~iiYGAtGy~G~lvae~l~~~g~~ 32 (382)
T COG3268 8 DIIIYGATGYAGGLVAEYLAREGLT 32 (382)
T ss_pred eEEEEccccchhHHHHHHHHHcCCc
Confidence 4789999999999999999998754
No 420
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=80.93 E-value=3.1 Score=29.72 Aligned_cols=30 Identities=27% Similarity=0.311 Sum_probs=25.0
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
.+++++|+|+ |-+|+.++..|...|++|..
T Consensus 116 ~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v 145 (270)
T TIGR00507 116 PNQRVLIIGA-GGAARAVALPLLKADCNVII 145 (270)
T ss_pred cCCEEEEEcC-cHHHHHHHHHHHHCCCEEEE
Confidence 3578999998 78999999999998876543
No 421
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=80.80 E-value=2.3 Score=32.86 Aligned_cols=30 Identities=23% Similarity=0.414 Sum_probs=22.6
Q ss_pred ceEEEeccCcchHHHHHHHHHHc--CCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRC--CPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~--g~~V~~I 82 (84)
++|.|.|+||.||.+.+.-+.+. .++|..+
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaL 33 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVAL 33 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCccccEEEEE
Confidence 57999999999999988877654 2444443
No 422
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=80.78 E-value=3.5 Score=28.42 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=26.3
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
.+++++|+|++|-+|..+++.+...|.+|..
T Consensus 144 ~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~ 174 (325)
T cd08253 144 AGETVLVHGGSGAVGHAAVQLARWAGARVIA 174 (325)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEE
Confidence 4678999999999999999988888877543
No 423
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=80.17 E-value=3.6 Score=28.48 Aligned_cols=31 Identities=16% Similarity=0.237 Sum_probs=26.5
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
.+.+++|+|++|-+|..+++.+...|.+|..
T Consensus 144 ~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~ 174 (328)
T cd08268 144 PGDSVLITAASSSVGLAAIQIANAAGATVIA 174 (328)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEE
Confidence 3568999999999999999999888877654
No 424
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=80.01 E-value=2 Score=33.10 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=22.3
Q ss_pred cceEEEeccCcchHHHHHHHHHHcC
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCC 76 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g 76 (84)
..+|.|+|++|.+|++++..|...+
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~ 68 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGE 68 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcc
Confidence 4679999999999999999998765
No 425
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=79.79 E-value=2.9 Score=30.35 Aligned_cols=27 Identities=33% Similarity=0.367 Sum_probs=22.5
Q ss_pred EEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 55 VFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 55 vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
|+|.| .|++|..++.+|.+.|.+|..|
T Consensus 6 v~IIG-gGi~G~s~A~~L~~~g~~V~li 32 (376)
T PRK11259 6 VIVIG-LGSMGSAAGYYLARRGLRVLGL 32 (376)
T ss_pred EEEEC-CCHHHHHHHHHHHHCCCeEEEE
Confidence 66665 5999999999999999888654
No 426
>KOG1610|consensus
Probab=79.71 E-value=2.4 Score=32.13 Aligned_cols=32 Identities=31% Similarity=0.442 Sum_probs=28.1
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
...+.|+|||...=.|..++++|.++|+.|-.
T Consensus 27 ~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~A 58 (322)
T KOG1610|consen 27 LSDKAVLITGCDSGFGRLLAKKLDKKGFRVFA 58 (322)
T ss_pred cCCcEEEEecCCcHHHHHHHHHHHhcCCEEEE
Confidence 45688999999998999999999999998743
No 427
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=79.70 E-value=4 Score=28.79 Aligned_cols=30 Identities=37% Similarity=0.489 Sum_probs=25.6
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
+.+|+|.|++|.+|..+++.+...|.+|..
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~ 176 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVA 176 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEE
Confidence 468999999999999999888888877644
No 428
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=79.68 E-value=3.1 Score=32.97 Aligned_cols=31 Identities=16% Similarity=0.145 Sum_probs=26.0
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
+++++++|+|+ |-+|+.++..|.+.|++|..
T Consensus 377 ~~~k~vlIlGa-GGagrAia~~L~~~G~~V~i 407 (529)
T PLN02520 377 LAGKLFVVIGA-GGAGKALAYGAKEKGARVVI 407 (529)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCEEEE
Confidence 45688999999 78899999999999886543
No 429
>PRK08818 prephenate dehydrogenase; Provisional
Probab=79.60 E-value=3.4 Score=31.56 Aligned_cols=30 Identities=23% Similarity=0.264 Sum_probs=24.7
Q ss_pred cceEEEeccCcchHHHHHHHHHHc-CCceEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRC-CPQMLS 81 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~-g~~V~~ 81 (84)
.++|.|.|.+|.+|.++.+.|.+. +++|..
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g 34 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIG 34 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEE
Confidence 467999999999999999999864 566543
No 430
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=79.60 E-value=3.3 Score=31.67 Aligned_cols=34 Identities=12% Similarity=0.196 Sum_probs=30.9
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
+.++.++|.|.+..+|+-+...|++++..|...|
T Consensus 212 l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicH 245 (345)
T PLN02897 212 IAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVH 245 (345)
T ss_pred CCCCEEEEECCCccccHHHHHHHHHCCCEEEEEc
Confidence 4689999999999999999999999988888776
No 431
>KOG1478|consensus
Probab=79.42 E-value=2.8 Score=31.59 Aligned_cols=27 Identities=30% Similarity=0.380 Sum_probs=23.6
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCc
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQ 78 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~ 78 (84)
.|.++|||++.-+|-.++.+|++...+
T Consensus 3 RKvalITGanSglGl~i~~RLl~~~De 29 (341)
T KOG1478|consen 3 RKVALITGANSGLGLAICKRLLAEDDE 29 (341)
T ss_pred ceEEEEecCCCcccHHHHHHHHhccCC
Confidence 578999999999999999999986544
No 432
>KOG4288|consensus
Probab=79.26 E-value=2.2 Score=31.64 Aligned_cols=29 Identities=24% Similarity=0.515 Sum_probs=24.8
Q ss_pred eEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 54 TVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 54 ~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
...+.|+.||+|..+++.+...||.|..+
T Consensus 4 k~~vfgg~gflg~~ic~~a~~sgy~vvsv 32 (283)
T KOG4288|consen 4 KLIVFGGNGFLGKRICQEAVTSGYQVVSV 32 (283)
T ss_pred cceeecccccchhhhhHHHHhcCceEEEe
Confidence 45678999999999999999999987543
No 433
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.25 E-value=3.3 Score=30.90 Aligned_cols=34 Identities=9% Similarity=0.215 Sum_probs=29.5
Q ss_pred hccceEEEeccCcchHHHHHHHHHHc----CCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRC----CPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~----g~~V~~I~ 83 (84)
+.+++++|.|.+..+|+-+...|.++ +..|...|
T Consensus 159 l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~h 196 (297)
T PRK14168 159 TSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVH 196 (297)
T ss_pred CCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEec
Confidence 46799999999999999999999987 57777655
No 434
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=79.12 E-value=3.6 Score=29.59 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=24.2
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++|.|.| +|..|+.++..+...|++|..+
T Consensus 4 ~kIaViG-aG~mG~~iA~~la~~G~~V~l~ 32 (287)
T PRK08293 4 KNVTVAG-AGVLGSQIAFQTAFHGFDVTIY 32 (287)
T ss_pred cEEEEEC-CCHHHHHHHHHHHhcCCeEEEE
Confidence 4677886 5999999999999999987654
No 435
>PLN02256 arogenate dehydrogenase
Probab=79.11 E-value=3.5 Score=30.42 Aligned_cols=30 Identities=20% Similarity=0.395 Sum_probs=25.2
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
+.++|.|.| .|.+|+.++..|.+.|++|..
T Consensus 35 ~~~kI~IIG-~G~mG~slA~~L~~~G~~V~~ 64 (304)
T PLN02256 35 RKLKIGIVG-FGNFGQFLAKTFVKQGHTVLA 64 (304)
T ss_pred CCCEEEEEe-eCHHHHHHHHHHHhCCCEEEE
Confidence 457788888 799999999999998877664
No 436
>PRK14031 glutamate dehydrogenase; Provisional
Probab=79.07 E-value=3.5 Score=32.40 Aligned_cols=32 Identities=19% Similarity=0.428 Sum_probs=28.1
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+++++|+|.|. |-+|++.++.|.+.|.+|..|
T Consensus 226 l~g~rVaVQGf-GNVG~~aA~~L~e~GAkVVaV 257 (444)
T PRK14031 226 LKGKVCLVSGS-GNVAQYTAEKVLELGGKVVTM 257 (444)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEE
Confidence 46788988887 999999999999999998764
No 437
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=79.06 E-value=3.3 Score=31.87 Aligned_cols=34 Identities=15% Similarity=0.154 Sum_probs=30.8
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
+.+++++|.|.+..+|+-+...|++++..|...|
T Consensus 229 l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicH 262 (364)
T PLN02616 229 IKGKRAVVIGRSNIVGMPAALLLQREDATVSIVH 262 (364)
T ss_pred CCCCEEEEECCCccccHHHHHHHHHCCCeEEEeC
Confidence 4689999999999999999999999988888765
No 438
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=78.92 E-value=3.8 Score=30.01 Aligned_cols=31 Identities=13% Similarity=0.232 Sum_probs=26.0
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
..+++++|.|. |-+|+.+++.|...|.+|..
T Consensus 149 l~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v 179 (287)
T TIGR02853 149 IHGSNVMVLGF-GRTGMTIARTFSALGARVFV 179 (287)
T ss_pred CCCCEEEEEcC-hHHHHHHHHHHHHCCCEEEE
Confidence 35789999998 66999999999999887653
No 439
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=78.92 E-value=3.5 Score=30.31 Aligned_cols=28 Identities=21% Similarity=0.192 Sum_probs=22.7
Q ss_pred eEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 54 TVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 54 ~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+|.| +|.|.+|+++.+.|-++|+.|..+
T Consensus 5 ~v~I-vG~GliG~s~a~~l~~~g~~v~i~ 32 (279)
T COG0287 5 KVGI-VGLGLMGGSLARALKEAGLVVRII 32 (279)
T ss_pred EEEE-ECCchHHHHHHHHHHHcCCeEEEE
Confidence 4444 559999999999999999887543
No 440
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=78.87 E-value=4.2 Score=28.67 Aligned_cols=32 Identities=28% Similarity=0.324 Sum_probs=26.9
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++|.|.| .|-+|+++++.|.+.|..|..|
T Consensus 21 l~g~~vaIqG-fGnVG~~~a~~L~~~G~~vV~v 52 (217)
T cd05211 21 LEGLTVAVQG-LGNVGWGLAKKLAEEGGKVLAV 52 (217)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEE
Confidence 4678888887 6999999999999998877654
No 441
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=78.64 E-value=5.1 Score=23.62 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=21.8
Q ss_pred EEEeccCcchHHHHHHHHHHcC---CceEEE
Q psy8179 55 VFITGATGFLGSLLVEKLLRCC---PQMLSL 82 (84)
Q Consensus 55 vlitGatGfiG~~l~~~ll~~g---~~V~~I 82 (84)
|.+. |+|-+|+.+++.|++.| ++|..+
T Consensus 2 I~iI-G~G~mg~al~~~l~~~g~~~~~v~~~ 31 (96)
T PF03807_consen 2 IGII-GAGNMGSALARGLLASGIKPHEVIIV 31 (96)
T ss_dssp EEEE-STSHHHHHHHHHHHHTTS-GGEEEEE
T ss_pred EEEE-CCCHHHHHHHHHHHHCCCCceeEEee
Confidence 4444 89999999999999998 666644
No 442
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=78.52 E-value=4.8 Score=28.50 Aligned_cols=32 Identities=22% Similarity=0.254 Sum_probs=26.5
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.+.+++|.|++|-+|..+++.+...|.+|..+
T Consensus 139 ~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~ 170 (329)
T cd08250 139 SGETVLVTAAAGGTGQFAVQLAKLAGCHVIGT 170 (329)
T ss_pred CCCEEEEEeCccHHHHHHHHHHHHcCCeEEEE
Confidence 45789999999999999988888888776443
No 443
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=78.23 E-value=3.9 Score=29.38 Aligned_cols=29 Identities=14% Similarity=0.306 Sum_probs=23.8
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++|.|.| +|.+|+.++..+...|++|..+
T Consensus 4 ~~I~ViG-aG~mG~~iA~~la~~G~~V~l~ 32 (291)
T PRK06035 4 KVIGVVG-SGVMGQGIAQVFARTGYDVTIV 32 (291)
T ss_pred cEEEEEC-ccHHHHHHHHHHHhcCCeEEEE
Confidence 4577775 5999999999999999987643
No 444
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=78.06 E-value=4.8 Score=27.81 Aligned_cols=31 Identities=16% Similarity=0.294 Sum_probs=26.4
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
.+.+++|+|++|-+|..+.+.+...|.+|..
T Consensus 139 ~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~ 169 (325)
T TIGR02824 139 AGETVLIHGGASGIGTTAIQLAKAFGARVFT 169 (325)
T ss_pred CCCEEEEEcCcchHHHHHHHHHHHcCCEEEE
Confidence 3578999999999999999988888887654
No 445
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=77.55 E-value=8.1 Score=22.76 Aligned_cols=13 Identities=31% Similarity=0.516 Sum_probs=8.2
Q ss_pred cceEEEeccCcch
Q psy8179 52 DQTVFITGATGFL 64 (84)
Q Consensus 52 ~~~vlitGatGfi 64 (84)
+++|+|||+..|-
T Consensus 3 g~rVli~GgR~~~ 15 (71)
T PF10686_consen 3 GMRVLITGGRDWT 15 (71)
T ss_pred CCEEEEEECCccc
Confidence 4566677766663
No 446
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.39 E-value=5 Score=29.90 Aligned_cols=34 Identities=12% Similarity=0.234 Sum_probs=28.9
Q ss_pred hccceEEEeccCcchHHHHHHHHHH----cCCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLR----CCPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~----~g~~V~~I~ 83 (84)
+.++.++|.|.+..+|+-+...|++ .+..|...|
T Consensus 157 l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~h 194 (295)
T PRK14174 157 TKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICH 194 (295)
T ss_pred CCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEe
Confidence 3579999999999999999999887 577777665
No 447
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=77.24 E-value=4 Score=30.51 Aligned_cols=34 Identities=12% Similarity=0.244 Sum_probs=29.0
Q ss_pred hccceEEEeccCcchHHHHHHHHHHc----CCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRC----CPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~----g~~V~~I~ 83 (84)
+.++.++|.|.+..+|+-+...|+++ +..|...|
T Consensus 155 l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvch 192 (297)
T PRK14167 155 TEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCH 192 (297)
T ss_pred CCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeC
Confidence 46899999999999999999999987 66776554
No 448
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=77.15 E-value=5.5 Score=27.66 Aligned_cols=32 Identities=16% Similarity=0.163 Sum_probs=27.0
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.+.+++|.|++|-+|..+++.+...|.+|..+
T Consensus 142 ~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~ 173 (320)
T cd08243 142 PGDTLLIRGGTSSVGLAALKLAKALGATVTAT 173 (320)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCEEEEE
Confidence 35789999999999999999998888876543
No 449
>PRK06223 malate dehydrogenase; Reviewed
Probab=77.14 E-value=4.4 Score=29.31 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=21.1
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCC
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCP 77 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~ 77 (84)
++|.|.|+ |++|+.++..+...+.
T Consensus 3 ~KI~VIGa-G~vG~~ia~~la~~~~ 26 (307)
T PRK06223 3 KKISIIGA-GNVGATLAHLLALKEL 26 (307)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC
Confidence 57899998 9999999999988764
No 450
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.01 E-value=4.8 Score=28.90 Aligned_cols=30 Identities=20% Similarity=0.123 Sum_probs=24.7
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.++|.|.|+ |..|+.+...|+.+|++|...
T Consensus 4 ~~kI~vIGa-G~mG~~iA~~la~~G~~V~l~ 33 (292)
T PRK07530 4 IKKVGVIGA-GQMGNGIAHVCALAGYDVLLN 33 (292)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCCeEEEE
Confidence 356777765 999999999999999988643
No 451
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=76.87 E-value=5.8 Score=27.52 Aligned_cols=32 Identities=31% Similarity=0.223 Sum_probs=25.6
Q ss_pred hhhhhccceEEEeccCcchHHHHHHHHHHcCCc
Q psy8179 46 IQEFYKDQTVFITGATGFLGSLLVEKLLRCCPQ 78 (84)
Q Consensus 46 ~~~~~~~~~vlitGatGfiG~~l~~~ll~~g~~ 78 (84)
....+..++|+|.|+. -+|+.++..|.+.|..
T Consensus 15 ~q~~L~~~~V~IvG~G-glGs~ia~~La~~Gvg 46 (200)
T TIGR02354 15 IVQKLEQATVAICGLG-GLGSNVAINLARAGIG 46 (200)
T ss_pred HHHHHhCCcEEEECcC-HHHHHHHHHHHHcCCC
Confidence 3445667889999885 5899999999999863
No 452
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=76.67 E-value=4.6 Score=30.15 Aligned_cols=34 Identities=6% Similarity=0.157 Sum_probs=28.9
Q ss_pred hccceEEEeccCcchHHHHHHHHHHc----CCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRC----CPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~----g~~V~~I~ 83 (84)
+.+++++|.|.+..+|+-+...|+++ +..|+..|
T Consensus 155 l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvch 192 (293)
T PRK14185 155 TSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCH 192 (293)
T ss_pred CCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEec
Confidence 46899999999999999999999987 46676654
No 453
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=76.67 E-value=4.9 Score=29.85 Aligned_cols=34 Identities=12% Similarity=0.129 Sum_probs=29.7
Q ss_pred hccceEEEeccCcchHHHHHHHHHH----cCCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLR----CCPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~----~g~~V~~I~ 83 (84)
+.++.++|.|.+..+|+-+...|++ ++..|...|
T Consensus 155 l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~h 192 (286)
T PRK14184 155 PAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCH 192 (286)
T ss_pred CCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEe
Confidence 4679999999999999999999998 677787665
No 454
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=76.39 E-value=5.6 Score=28.09 Aligned_cols=31 Identities=19% Similarity=0.289 Sum_probs=26.1
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
.+.+++|.|++|-+|..+++.+...|.+|..
T Consensus 145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~ 175 (329)
T cd05288 145 PGETVVVSAAAGAVGSVVGQIAKLLGARVVG 175 (329)
T ss_pred CCCEEEEecCcchHHHHHHHHHHHcCCEEEE
Confidence 3578999999999999999988888876544
No 455
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=76.39 E-value=5.1 Score=28.80 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=23.9
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++|.|.| .|.+|+.++..|+..|++|...
T Consensus 5 ~~V~vIG-~G~mG~~iA~~l~~~G~~V~~~ 33 (295)
T PLN02545 5 KKVGVVG-AGQMGSGIAQLAAAAGMDVWLL 33 (295)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhcCCeEEEE
Confidence 4577775 5999999999999999887643
No 456
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=76.30 E-value=6.5 Score=22.67 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=21.4
Q ss_pred ccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 59 GATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 59 GatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
-|+|++|-.++..|.+.|.+|..|+
T Consensus 5 iGgG~ig~E~A~~l~~~g~~vtli~ 29 (80)
T PF00070_consen 5 IGGGFIGIELAEALAELGKEVTLIE 29 (80)
T ss_dssp ESSSHHHHHHHHHHHHTTSEEEEEE
T ss_pred ECcCHHHHHHHHHHHHhCcEEEEEe
Confidence 4679999999999999988887764
No 457
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=76.21 E-value=4.5 Score=29.07 Aligned_cols=32 Identities=22% Similarity=0.293 Sum_probs=26.9
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
..++++.|-|. |-+|+++++.|.+.|..|..|
T Consensus 30 l~g~~v~IqGf-G~VG~~~a~~l~~~Ga~vv~v 61 (244)
T PF00208_consen 30 LEGKRVAIQGF-GNVGSHAARFLAELGAKVVAV 61 (244)
T ss_dssp STTCEEEEEES-SHHHHHHHHHHHHTTEEEEEE
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEE
Confidence 45678888766 999999999999999888665
No 458
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=76.20 E-value=5.9 Score=27.14 Aligned_cols=31 Identities=32% Similarity=0.416 Sum_probs=26.3
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
.+.+++|.|++|.+|..+...+...|.+|..
T Consensus 144 ~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~ 174 (309)
T cd05289 144 AGQTVLIHGAAGGVGSFAVQLAKARGARVIA 174 (309)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCCEEEE
Confidence 4578999999999999999988888877654
No 459
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=76.16 E-value=4.7 Score=30.90 Aligned_cols=29 Identities=14% Similarity=0.300 Sum_probs=24.4
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++|.|. |.||+|..+...|.+.|++|..+
T Consensus 4 ~kI~VI-GlG~~G~~~A~~La~~G~~V~~~ 32 (415)
T PRK11064 4 ETISVI-GLGYIGLPTAAAFASRQKQVIGV 32 (415)
T ss_pred cEEEEE-CcchhhHHHHHHHHhCCCEEEEE
Confidence 567676 57999999999999999998754
No 460
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=76.16 E-value=5 Score=29.88 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=29.3
Q ss_pred hccceEEEeccCcchHHHHHHHHHHc----CCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRC----CPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~----g~~V~~I~ 83 (84)
+.+++++|.|.+..+|+-+...|+++ +..|...|
T Consensus 151 l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvch 188 (287)
T PRK14181 151 LHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLH 188 (287)
T ss_pred CCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeC
Confidence 46899999999999999999999998 66776654
No 461
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=75.79 E-value=4.6 Score=29.40 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=21.8
Q ss_pred EEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 55 VFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 55 vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
|+|.| .|++|..++.+|.+.|.+|..+
T Consensus 3 v~IIG-~Gi~G~s~A~~L~~~G~~V~vl 29 (365)
T TIGR03364 3 LIIVG-AGILGLAHAYAAARRGLSVTVI 29 (365)
T ss_pred EEEEC-CCHHHHHHHHHHHHCCCeEEEE
Confidence 55655 5899999999999999887654
No 462
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=75.65 E-value=5.7 Score=29.43 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=30.5
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
+.++++.|.|.+..+|+-+...|.+.+..|...|
T Consensus 150 l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~h 183 (279)
T PRK14178 150 IAGKRAVVVGRSIDVGRPMAALLLNADATVTICH 183 (279)
T ss_pred CCCCEEEEECCCccccHHHHHHHHhCCCeeEEEe
Confidence 4679999999999999999999999988887765
No 463
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=75.47 E-value=5.2 Score=28.68 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=23.7
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
++|.|.| .|.+|+.+...|.+.|++|..
T Consensus 2 mkI~iiG-~G~mG~~~a~~L~~~g~~V~~ 29 (325)
T PRK00094 2 MKIAVLG-AGSWGTALAIVLARNGHDVTL 29 (325)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCEEEE
Confidence 4677887 599999999999999998854
No 464
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=75.39 E-value=5.5 Score=27.99 Aligned_cols=31 Identities=16% Similarity=0.139 Sum_probs=26.3
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
.+.+++|.|++|-+|..+++.+...|.+|..
T Consensus 139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~ 169 (324)
T cd08292 139 PGQWLIQNAAGGAVGKLVAMLAAARGINVIN 169 (324)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCCeEEE
Confidence 3578999999999999999988888877644
No 465
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=75.32 E-value=5.5 Score=28.98 Aligned_cols=29 Identities=14% Similarity=0.273 Sum_probs=24.3
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++|.|. |+|.+|+.+...|.+.|++|..+
T Consensus 3 mkI~Ii-G~G~mG~~~A~~L~~~G~~V~~~ 31 (341)
T PRK08229 3 ARICVL-GAGSIGCYLGGRLAAAGADVTLI 31 (341)
T ss_pred ceEEEE-CCCHHHHHHHHHHHhcCCcEEEE
Confidence 456666 68999999999999999998754
No 466
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=75.23 E-value=5.4 Score=28.80 Aligned_cols=29 Identities=28% Similarity=0.356 Sum_probs=23.7
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++|.|.| .|.+|+.++..|.+.|++|..+
T Consensus 5 ~~I~vIG-aG~mG~~iA~~l~~~g~~V~~~ 33 (311)
T PRK06130 5 QNLAIIG-AGTMGSGIAALFARKGLQVVLI 33 (311)
T ss_pred cEEEEEC-CCHHHHHHHHHHHhCCCeEEEE
Confidence 4577775 4999999999999999887654
No 467
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=75.09 E-value=6.5 Score=27.44 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=26.6
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
.+.+++|+|+++-+|..+.+.+...|.+|..
T Consensus 166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~ 196 (342)
T cd08266 166 PGETVLVHGAGSGVGSAAIQIAKLFGATVIA 196 (342)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEE
Confidence 3568999999999999999999998887644
No 468
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=74.88 E-value=4.8 Score=31.65 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.6
Q ss_pred cceEEEeccCcchHHHHHHHHHHc
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRC 75 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~ 75 (84)
..+|.|+|++|.+|++++..|+..
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~ 123 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASG 123 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhc
Confidence 467999999999999999998876
No 469
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=74.78 E-value=5.6 Score=28.11 Aligned_cols=30 Identities=30% Similarity=0.282 Sum_probs=24.7
Q ss_pred eEEEeccCcch-HHHHHHHHHHcCCceEEEE
Q psy8179 54 TVFITGATGFL-GSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 54 ~vlitGatGfi-G~~l~~~ll~~g~~V~~I~ 83 (84)
.|-||||+|.+ |-.+++.|.+.++++..|+
T Consensus 6 ivgisGASG~iygvrlLe~L~~~~~e~hlvi 36 (191)
T COG0163 6 IVGISGASGAIYGVRLLEVLRELGVETHLVI 36 (191)
T ss_pred EEEEeccccHHHHHHHHHHHHhcCceEEEEE
Confidence 46789999964 7889999999988887664
No 470
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=74.58 E-value=7.3 Score=27.79 Aligned_cols=30 Identities=20% Similarity=0.385 Sum_probs=25.8
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
+.+++|.|++|.+|..+++.....|.+|..
T Consensus 163 g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~ 192 (350)
T cd08248 163 GKRVLILGGSGGVGTFAIQLLKAWGAHVTT 192 (350)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEE
Confidence 678999999999999999988888877644
No 471
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=74.43 E-value=6.3 Score=23.94 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=20.2
Q ss_pred EEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 55 VFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 55 vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
|+|.|. |-+|..+++.|.+.+.+|..|
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~~~vvvi 27 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGGIDVVVI 27 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTTSEEEEE
T ss_pred eEEEcC-CHHHHHHHHHHHhCCCEEEEE
Confidence 456666 579999999999976567655
No 472
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=74.35 E-value=4.9 Score=27.77 Aligned_cols=25 Identities=20% Similarity=0.473 Sum_probs=20.8
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcC
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCC 76 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g 76 (84)
+.++|.|.| +|.+|+.++..+.+.+
T Consensus 3 ~~~kI~iIG-~G~mg~ala~~l~~~~ 27 (245)
T PRK07634 3 KKHRILFIG-AGRMAEAIFSGLLKTS 27 (245)
T ss_pred CCCeEEEEC-cCHHHHHHHHHHHhCC
Confidence 356788887 6999999999998876
No 473
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=74.27 E-value=8 Score=24.55 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=19.9
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCc
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQ 78 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~ 78 (84)
.++|+|.| .|-+|+.+++.|...|..
T Consensus 2 ~~~v~iiG-~G~vGs~va~~L~~~Gv~ 27 (135)
T PF00899_consen 2 NKRVLIIG-AGGVGSEVAKNLARSGVG 27 (135)
T ss_dssp T-EEEEES-TSHHHHHHHHHHHHHTTS
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHhCCC
Confidence 35677776 566899999999998864
No 474
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=74.19 E-value=4.3 Score=28.85 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=19.6
Q ss_pred EEEeccCcchHHHHHHHHHHcC
Q psy8179 55 VFITGATGFLGSLLVEKLLRCC 76 (84)
Q Consensus 55 vlitGatGfiG~~l~~~ll~~g 76 (84)
|.|.||+|.+|+.++..|+..+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~ 22 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGS 22 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCC
Confidence 4688999999999999999886
No 475
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=74.12 E-value=7.4 Score=26.25 Aligned_cols=31 Identities=16% Similarity=0.288 Sum_probs=25.2
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
.+.+++|.|++|.+|..+.+.+...|.+|..
T Consensus 104 ~g~~vlv~g~~~~~g~~~~~~a~~~g~~v~~ 134 (288)
T smart00829 104 PGESVLIHAAAGGVGQAAIQLAQHLGAEVFA 134 (288)
T ss_pred CCCEEEEecCCcHHHHHHHHHHHHcCCEEEE
Confidence 4568999999999999998888777776543
No 476
>PRK06753 hypothetical protein; Provisional
Probab=74.05 E-value=6.1 Score=28.77 Aligned_cols=29 Identities=21% Similarity=0.174 Sum_probs=24.1
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++|+|.|| |-.|..++..|.+.|++|..+
T Consensus 1 ~~V~IvGg-G~aGl~~A~~L~~~g~~v~v~ 29 (373)
T PRK06753 1 MKIAIIGA-GIGGLTAAALLQEQGHEVKVF 29 (373)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCcEEEE
Confidence 36788876 899999999999999988654
No 477
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=73.85 E-value=7.3 Score=27.30 Aligned_cols=30 Identities=33% Similarity=0.439 Sum_probs=25.8
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
+.+++|+|++|-+|..+++.+...|.+|..
T Consensus 143 ~~~vlI~g~~~~~g~~~~~la~~~g~~v~~ 172 (324)
T cd08244 143 GDVVLVTAAAGGLGSLLVQLAKAAGATVVG 172 (324)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEE
Confidence 568999999999999999988888877643
No 478
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=73.65 E-value=7 Score=27.21 Aligned_cols=32 Identities=19% Similarity=0.314 Sum_probs=26.3
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++|+|.|| |-+|..-++.|++.|.+|+.|
T Consensus 7 l~gk~vlVvGg-G~va~rk~~~Ll~~ga~VtVv 38 (205)
T TIGR01470 7 LEGRAVLVVGG-GDVALRKARLLLKAGAQLRVI 38 (205)
T ss_pred cCCCeEEEECc-CHHHHHHHHHHHHCCCEEEEE
Confidence 46788888874 778999999999999888754
No 479
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=73.52 E-value=6.2 Score=29.71 Aligned_cols=24 Identities=38% Similarity=0.292 Sum_probs=20.4
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCC
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCP 77 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~ 77 (84)
++|.|+|+ |.+|+.++..|+.++.
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~ 24 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGL 24 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccc
Confidence 36889999 9999999999977654
No 480
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=73.30 E-value=7.1 Score=28.12 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=23.6
Q ss_pred ceEEEeccCcchHHHHHHHHHHc-CCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRC-CPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~-g~~V~~I 82 (84)
++|.|.|++|-+|+.+++.+.+. +.++..+
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav 32 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAA 32 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEE
Confidence 47999999999999999999874 3444443
No 481
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=73.17 E-value=7.7 Score=27.31 Aligned_cols=30 Identities=37% Similarity=0.505 Sum_probs=25.8
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
+.+++|.|++|-+|..+++.....|.+|..
T Consensus 147 ~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~ 176 (324)
T cd08288 147 DGPVLVTGAAGGVGSVAVALLARLGYEVVA 176 (324)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEE
Confidence 468999999999999999988888877644
No 482
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=73.03 E-value=7.2 Score=28.43 Aligned_cols=32 Identities=31% Similarity=0.482 Sum_probs=26.8
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+.+++|.|.|. |-+|+++++.|.+.|.+|..|
T Consensus 36 l~g~~vaIqGf-GnVG~~~a~~L~e~GakvvaV 67 (254)
T cd05313 36 LKGKRVAISGS-GNVAQYAAEKLLELGAKVVTL 67 (254)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEE
Confidence 45678888765 999999999999999888755
No 483
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=73.01 E-value=5.9 Score=28.79 Aligned_cols=27 Identities=26% Similarity=0.482 Sum_probs=22.7
Q ss_pred EEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 55 VFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 55 vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
|+|.| .|.+|..++.+|.++|.+|..+
T Consensus 3 vvIIG-aGi~G~s~A~~La~~g~~V~l~ 29 (380)
T TIGR01377 3 VIVVG-AGIMGCFAAYHLAKHGKKTLLL 29 (380)
T ss_pred EEEEC-CCHHHHHHHHHHHHCCCeEEEE
Confidence 66776 6999999999999999887654
No 484
>PRK07236 hypothetical protein; Provisional
Probab=72.95 E-value=7 Score=28.88 Aligned_cols=31 Identities=13% Similarity=0.084 Sum_probs=25.5
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
..+.|+|.|| |..|..++..|.+.|++|..+
T Consensus 5 ~~~~ViIVGa-G~aGl~~A~~L~~~G~~v~v~ 35 (386)
T PRK07236 5 SGPRAVVIGG-SLGGLFAALLLRRAGWDVDVF 35 (386)
T ss_pred CCCeEEEECC-CHHHHHHHHHHHhCCCCEEEE
Confidence 3467888876 899999999999999988654
No 485
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=72.75 E-value=7.5 Score=27.74 Aligned_cols=31 Identities=35% Similarity=0.477 Sum_probs=26.2
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
.+.+++|.|++|-+|..+++.+...|.+|..
T Consensus 177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~ 207 (350)
T cd08274 177 AGETVLVTGASGGVGSALVQLAKRRGAIVIA 207 (350)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCEEEE
Confidence 3578999999999999999888888877643
No 486
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.75 E-value=6.5 Score=28.53 Aligned_cols=29 Identities=31% Similarity=0.391 Sum_probs=24.6
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
++|.|.|+ |..|+.++..++..|++|+..
T Consensus 6 ~~V~ViGa-G~mG~~iA~~~a~~G~~V~l~ 34 (286)
T PRK07819 6 QRVGVVGA-GQMGAGIAEVCARAGVDVLVF 34 (286)
T ss_pred cEEEEEcc-cHHHHHHHHHHHhCCCEEEEE
Confidence 36778876 999999999999999998754
No 487
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=72.74 E-value=7.3 Score=27.62 Aligned_cols=31 Identities=19% Similarity=0.383 Sum_probs=24.9
Q ss_pred cceEEEeccCcchHHHHHHHHHHc-CCceEEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRC-CPQMLSL 82 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~-g~~V~~I 82 (84)
+.+++|.|++|.+|..+++.+... |.+|..+
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~ 180 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIAT 180 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEE
Confidence 668999999999999998777665 7766543
No 488
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=72.40 E-value=6.9 Score=28.72 Aligned_cols=24 Identities=42% Similarity=0.433 Sum_probs=20.5
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCC
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCP 77 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~ 77 (84)
++|.|.|+ |.+|+.++..|...|.
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~ 24 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGL 24 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCC
Confidence 35888887 9999999999999873
No 489
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=72.06 E-value=8.2 Score=27.22 Aligned_cols=30 Identities=37% Similarity=0.517 Sum_probs=25.7
Q ss_pred cc-eEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 52 DQ-TVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 52 ~~-~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
+. +++|.|++|.+|..+++.+...|.+|..
T Consensus 145 ~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~ 175 (323)
T TIGR02823 145 EDGPVLVTGATGGVGSLAVAILSKLGYEVVA 175 (323)
T ss_pred CCceEEEEcCCcHHHHHHHHHHHHcCCeEEE
Confidence 45 8999999999999999988888877543
No 490
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=71.94 E-value=8 Score=28.13 Aligned_cols=30 Identities=23% Similarity=0.216 Sum_probs=25.0
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.++|.|. |+|-+|+.+...|.+.|++|..+
T Consensus 5 ~m~I~Ii-G~GaiG~~lA~~L~~~g~~V~~~ 34 (313)
T PRK06249 5 TPRIGII-GTGAIGGFYGAMLARAGFDVHFL 34 (313)
T ss_pred CcEEEEE-CCCHHHHHHHHHHHHCCCeEEEE
Confidence 3568887 67999999999999999998754
No 491
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=71.87 E-value=6.5 Score=30.02 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=26.0
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
..++|+|.|| |+.|-..+..|.+.|++|..+
T Consensus 139 ~~~~VvIIGg-GpaGl~aA~~l~~~g~~V~li 169 (457)
T PRK11749 139 TGKKVAVIGA-GPAGLTAAHRLARKGYDVTIF 169 (457)
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCCCeEEEE
Confidence 3467889887 899999999999999988654
No 492
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=71.86 E-value=6.7 Score=27.93 Aligned_cols=32 Identities=13% Similarity=0.150 Sum_probs=26.8
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
.+.+|+|.|++|-+|..+++.+...|.+|..+
T Consensus 146 ~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~ 177 (341)
T cd08290 146 PGDWVIQNGANSAVGQAVIQLAKLLGIKTINV 177 (341)
T ss_pred CCCEEEEccchhHHHHHHHHHHHHcCCeEEEE
Confidence 45789999999999999999888888776443
No 493
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=71.80 E-value=7.9 Score=28.91 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=25.8
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceEEEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQMLSLR 83 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~~I~ 83 (84)
+++++|.|+ |++|-.++..|.+.|.+|..|.
T Consensus 144 ~~~vvViGg-G~ig~E~A~~l~~~g~~Vtlv~ 174 (396)
T PRK09754 144 ERSVVIVGA-GTIGLELAASATQRRCKVTVIE 174 (396)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCCeEEEEe
Confidence 567888875 8999999999999888887664
No 494
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=71.69 E-value=8 Score=27.51 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=23.2
Q ss_pred eEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 54 TVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 54 ~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
+|.|. |+|.+|..+...|.+.|++|..+
T Consensus 2 kI~Ii-G~G~iG~~~a~~L~~~g~~V~~~ 29 (305)
T PRK12921 2 RIAVV-GAGAVGGTFGGRLLEAGRDVTFL 29 (305)
T ss_pred eEEEE-CCCHHHHHHHHHHHHCCCceEEE
Confidence 56666 57899999999999999988654
No 495
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=71.69 E-value=8.8 Score=26.28 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=26.0
Q ss_pred ccceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 51 KDQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 51 ~~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
.+.+++|.|++|-+|..+++.+...|.+|..
T Consensus 136 ~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~ 166 (320)
T cd05286 136 PGDTVLVHAAAGGVGLLLTQWAKALGATVIG 166 (320)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEE
Confidence 4578999999999999999888888877643
No 496
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=71.59 E-value=7.5 Score=28.60 Aligned_cols=27 Identities=22% Similarity=0.413 Sum_probs=22.0
Q ss_pred ceEEEeccCcchHHHHHHHHHHcCC-ceE
Q psy8179 53 QTVFITGATGFLGSLLVEKLLRCCP-QML 80 (84)
Q Consensus 53 ~~vlitGatGfiG~~l~~~ll~~g~-~V~ 80 (84)
++|.|.|+ |++|+.++..++..|+ +|.
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~Vv 29 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELADLV 29 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCeEE
Confidence 46788886 9999999999999775 444
No 497
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=71.52 E-value=7.6 Score=28.73 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=21.7
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCC
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCP 77 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~ 77 (84)
+++|.|.|+ |.+|+.++..|...+.
T Consensus 6 ~~ki~iiGa-G~vG~~~a~~l~~~~~ 30 (315)
T PRK00066 6 HNKVVLVGD-GAVGSSYAYALVNQGI 30 (315)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCC
Confidence 467999998 9999999999988764
No 498
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=71.41 E-value=11 Score=26.95 Aligned_cols=30 Identities=30% Similarity=0.297 Sum_probs=25.2
Q ss_pred hhhhccceEEEeccCcchHHHHHHHHHHcCC
Q psy8179 47 QEFYKDQTVFITGATGFLGSLLVEKLLRCCP 77 (84)
Q Consensus 47 ~~~~~~~~vlitGatGfiG~~l~~~ll~~g~ 77 (84)
+..++.++|+|.|+ |-+|+.+++.|...|.
T Consensus 27 Q~~L~~~~VliiG~-GglGs~va~~La~~Gv 56 (245)
T PRK05690 27 QEKLKAARVLVVGL-GGLGCAASQYLAAAGV 56 (245)
T ss_pred HHHhcCCeEEEECC-CHHHHHHHHHHHHcCC
Confidence 34466788999988 8899999999999884
No 499
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=71.11 E-value=7.4 Score=30.39 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=26.6
Q ss_pred hccceEEEeccCcchHHHHHHHHHHcCCceEEE
Q psy8179 50 YKDQTVFITGATGFLGSLLVEKLLRCCPQMLSL 82 (84)
Q Consensus 50 ~~~~~vlitGatGfiG~~l~~~ll~~g~~V~~I 82 (84)
..+++++|.|. |.+|+.++..+...|.+|..+
T Consensus 210 l~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~ 241 (425)
T PRK05476 210 IAGKVVVVAGY-GDVGKGCAQRLRGLGARVIVT 241 (425)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEE
Confidence 36788999985 899999999999998876543
No 500
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=71.09 E-value=8.8 Score=26.69 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=26.2
Q ss_pred cceEEEeccCcchHHHHHHHHHHcCCceEE
Q psy8179 52 DQTVFITGATGFLGSLLVEKLLRCCPQMLS 81 (84)
Q Consensus 52 ~~~vlitGatGfiG~~l~~~ll~~g~~V~~ 81 (84)
+.+++|.|++|-+|..+++.+...|.+|..
T Consensus 133 ~~~vli~g~~~~~g~~~~~~a~~~g~~v~~ 162 (305)
T cd08270 133 GRRVLVTGASGGVGRFAVQLAALAGAHVVA 162 (305)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCEEEE
Confidence 678999999999999999999888877644
Done!