RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8179
(84 letters)
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif,
rossmann fold, short chain dehydrogenase/REDU family,
reductase; 2.30A {Mycobacterium tuberculosis}
Length = 478
Score = 54.5 bits (131), Expect = 1e-10
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 27 LDKEDDAEDIIWDDDTPSPIQEFYKDQTVFITGATGFLGSLLVEKLLRCCP 77
LD+ DA+ + + P P E +TV +TGATGFLG LV +LLR
Sbjct: 51 LDRFIDADTLATAVNLPGPSPE---LRTVLLTGATGFLGRYLVLELLRRLD 98
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 42.7 bits (101), Expect = 2e-06
Identities = 7/31 (22%), Positives = 10/31 (32%)
Query: 44 SPIQEFYKDQTVFITGATGFLGSLLVEKLLR 74
P+ + GATG LG +
Sbjct: 5 QPLSRPGAHVKYAVLGATGLLGHHAARAIRA 35
>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A
{Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB:
1wvg_A*
Length = 357
Score = 42.5 bits (100), Expect = 2e-06
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 47 QEFYKDQTVFITGATGFLGSLLVEKLLR 74
F++ + VF+TG TGF G L L
Sbjct: 4 NSFWQGKRVFVTGHTGFKGGWLSLWLQT 31
>1xq6_A Unknown protein; structural genomics, protein structure
initiative, CESG, AT5G02240, NADP, center for
eukaryotic structural genomics; HET: NAP; 1.80A
{Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A*
2q46_A* 2q4b_A*
Length = 253
Score = 41.8 bits (98), Expect = 4e-06
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 53 QTVFITGATGFLGSLLVEKLL 73
TV +TGA+G G ++ +KL
Sbjct: 5 PTVLVTGASGRTGQIVYKKLK 25
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 41.1 bits (96), Expect = 6e-06
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 55 VFITGATGFLGSLLVEKLLR 74
+ I GATG GS ++E+
Sbjct: 3 IGIIGATGRAGSRILEEAKN 22
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET:
NDP; 1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 41.2 bits (96), Expect = 6e-06
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 55 VFITGATGFLGSLLVEKLLR 74
+ + GATG GS +V + R
Sbjct: 3 IAVLGATGRAGSAIVAEARR 22
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 41.2 bits (97), Expect = 6e-06
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 51 KDQTVFITGATGFLGSLLVEKLLR 74
K + + + GA+GF+GS L+ + L
Sbjct: 3 KVKKIVLIGASGFVGSALLNEALN 26
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain
dehydrogenase reductase, oxidoreductase; HET: NMN AMP;
1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB:
1ujm_A* 1zze_A
Length = 342
Score = 39.2 bits (92), Expect = 3e-05
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 51 KDQTVFITGATGFLGSLLVEKLL 73
+ V +TGA GF+ S +VE+LL
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLL 32
>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase
reductase, NADPH, dihydroquercetin, rossmann fold,
oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera}
PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*
Length = 337
Score = 39.2 bits (92), Expect = 3e-05
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 51 KDQTVFITGATGFLGSLLVEKLL 73
+ +TV +TGA+GF+GS LV +LL
Sbjct: 4 QSETVCVTGASGFIGSWLVMRLL 26
>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain
dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis
vinifera} PDB: 3hfs_A
Length = 338
Score = 39.2 bits (92), Expect = 3e-05
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 53 QTVFITGATGFLGSLLVEKLL 73
+T + G TGF+ SLLV+ LL
Sbjct: 10 KTACVVGGTGFVASLLVKLLL 30
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 38.8 bits (91), Expect = 4e-05
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 55 VFITGATGFLGSLLVEKLLR 74
+FI G+TG +G L++ L
Sbjct: 3 IFIVGSTGRVGKSLLKSLST 22
>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase,
oxidoreductase, SDR, cardenolides, cardiac glycosides;
HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*
Length = 364
Score = 38.6 bits (89), Expect = 5e-05
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 54 TVFITGATGFLGSLLVEKLLR 74
I G TG +G+ L E L
Sbjct: 3 VALIVGVTGIIGNSLAEILPL 23
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural
genomics, APC7755, NADP, P protein structure
initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 38.1 bits (89), Expect = 6e-05
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 55 VFITGATGFLGSLLVEKLLR 74
V + GA G + L+ +L
Sbjct: 24 VLVVGANGKVARYLLSELKN 43
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase;
agrobacterium tumefa structural genomics, PSI-2,
protein structure initiative; 1.85A {Agrobacterium
tumefaciens}
Length = 342
Score = 38.1 bits (89), Expect = 8e-05
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 54 TVFITGATGFLGSLLVEKLLR 74
+ I GA G +G L ++L++
Sbjct: 16 HIAIIGAAGMVGRKLTQRLVK 36
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM
degradation, flavin reductase, diaphorase, green HAEM
binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP:
c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 37.7 bits (88), Expect = 9e-05
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 54 TVFITGATGFLGSLLVEKLLR 74
+ I GATG G + + ++
Sbjct: 5 KIAIFGATGQTGLTTLAQAVQ 25
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 37.7 bits (88), Expect = 1e-04
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 53 QTVFITGATGFLGSLLVEKLLR 74
+ V + GATG G L++++L
Sbjct: 6 KRVLLAGATGLTGEHLLDRILS 27
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid
dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter
salexigens}
Length = 267
Score = 37.7 bits (88), Expect = 1e-04
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 53 QTVFITGATGFLGSLLVEKLLR 74
+ +TGA G +GS + L
Sbjct: 3 NRLLVTGAAGGVGSAIRPHLGT 24
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 37.7 bits (88), Expect = 1e-04
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 53 QTVFITGATGFLGSLLVEKLLRCCPQ 78
+ + +TGA G LG ++ E+L
Sbjct: 4 KRLLVTGAAGQLGRVMRERLAPMAEI 29
>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid,
plant protein; 1.40A {Medicago sativa}
Length = 322
Score = 37.6 bits (88), Expect = 1e-04
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 54 TVFITGATGFLGSLLVEKLL 73
V +TG TGFLGS +++ LL
Sbjct: 3 RVCVTGGTGFLGSWIIKSLL 22
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 37.3 bits (87), Expect = 2e-04
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 54 TVFITGATGFLGSLLVEKLLR 74
+ +TGATG LG+ + + +
Sbjct: 2 NIMLTGATGHLGTHITNQAIA 22
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 37.1 bits (86), Expect = 2e-04
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 53 QTVFITGATGFLGSLLVEKLL 73
+ V I GA G + ++ +L
Sbjct: 24 KNVLILGAGGQIARHVINQLA 44
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula
dsm 2008} PDB: 3r14_A*
Length = 221
Score = 36.9 bits (85), Expect = 2e-04
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 54 TVFITGATGFLGSLLVEKLLR 74
+ I GA G + L LL
Sbjct: 7 YITILGAAGQIAQXLTATLLT 27
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin
C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana}
SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 37.3 bits (87), Expect = 2e-04
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 51 KDQTVFITGATGFLGSLLVEKLLR 74
++ + ITGA GF+ S + +L
Sbjct: 28 ENLKISITGAGGFIASHIARRLKH 51
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, melioidosis,
glanders; 2.10A {Burkholderia pseudomallei}
Length = 372
Score = 37.1 bits (86), Expect = 2e-04
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 41 DTPSPIQEFYKDQTVFITGATGFLGSLLVEKLLR 74
+ + K + V I G GF+G L +++L
Sbjct: 13 EAQTQGPGSMKAKKVLILGVNGFIGHHLSKRILE 46
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 36.9 bits (86), Expect = 2e-04
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 54 TVFITGATGFLGSLLVEKLLR 74
++ +TGATG LG L+++ LL+
Sbjct: 2 SIAVTGATGQLGGLVIQHLLK 22
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 36.3 bits (84), Expect = 3e-04
Identities = 9/24 (37%), Positives = 19/24 (79%)
Query: 51 KDQTVFITGATGFLGSLLVEKLLR 74
++++VFI GA+G G +L++++L
Sbjct: 17 QNKSVFILGASGETGRVLLKEILE 40
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 36.5 bits (85), Expect = 3e-04
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 55 VFITGATGFLGSLLVEKLLR 74
+ +TG++G +G+ LV L
Sbjct: 2 ILVTGSSGQIGTELVPYLAE 21
>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD
UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A*
3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*
Length = 351
Score = 36.1 bits (84), Expect = 4e-04
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 51 KDQTVFITGATGFLGSLLVEKLLR 74
+T ITG GF+GS L+EKLL+
Sbjct: 24 SPKTWLITGVAGFIGSNLLEKLLK 47
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C
PSI-biology; 2.00A {Corynebacterium glutamicum}
Length = 516
Score = 36.2 bits (84), Expect = 4e-04
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 54 TVFITGATGFLGSLLVEKLLR 74
TV ITG+ G +G L +L
Sbjct: 149 TVAITGSRGLVGRALTAQLQT 169
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 36.1 bits (84), Expect = 4e-04
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 51 KDQTVFITGATGFLGSLLVEKLLR 74
+ + ITG GF+GS L+E LL+
Sbjct: 26 QPKVWLITGVAGFIGSNLLETLLK 49
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthes methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 35.5 bits (82), Expect = 7e-04
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 55 VFITGATGFLGSLLVEKLLR 74
V I G GF+G+ L E+LLR
Sbjct: 3 VLILGVNGFIGNHLTERLLR 22
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK
triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1
MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A*
2gn9_A* 2gna_A*
Length = 344
Score = 35.3 bits (82), Expect = 8e-04
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 46 IQEFYKDQTVFITGATGFLGSLLVEKLL 73
Q +QT+ ITG TG G V K+L
Sbjct: 15 HQNMLDNQTILITGGTGSFGKCFVRKVL 42
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 35.0 bits (81), Expect = 0.001
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 46 IQEFYKDQTVFITGATGFLGSLLVEKLLR 74
I + ++QT+ ITG GF+GS L
Sbjct: 4 IDDELENQTILITGGAGFVGSNLAFHFQE 32
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 34.9 bits (81), Expect = 0.001
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 57 ITGATGFLGSLLVEKLLR 74
ITGATG LG ++E L++
Sbjct: 4 ITGATGQLGHYVIESLMK 21
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG
KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A
{Flavobacterium frigidimaris}
Length = 312
Score = 34.9 bits (81), Expect = 0.001
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 55 VFITGATGFLGSLLVEKLLR 74
+ I GA G +G+ L +KL +
Sbjct: 5 ILIIGACGQIGTELTQKLRK 24
>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins,
biosynthesis, EXO-glycal, rossman transferase; HET: UD1
NAD; 1.90A {Streptomyces chartreusis}
Length = 321
Score = 34.8 bits (81), Expect = 0.001
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 54 TVFITGATGFLGSLLVEKLLR 74
+ ITG GF+G L L+
Sbjct: 9 RILITGGAGFIGGHLARALVA 29
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 34.3 bits (79), Expect = 0.002
Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 28 DKEDDAEDIIWDDDTPSPIQEFYKDQTVFITGATGFLGSLLVEKLLRCCPQML 80
D E +DI ++ +Q + G G +G + +++ + PQ L
Sbjct: 14 DTELFHQDINANEKE---LQSVVSQSRFLVLGGAGSIGQAVTKEIFKRNPQKL 63
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 33.8 bits (78), Expect = 0.003
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 54 TVFITGATGFLGSLLVEKLLR 74
VFITG G +GS + E LL
Sbjct: 23 KVFITGICGQIGSHIAELLLE 43
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 33.5 bits (77), Expect = 0.003
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 50 YKDQTVFITGATGFLGSLLVEKLLR 74
+ V + G GF+GS LV++LL
Sbjct: 30 LANTNVMVVGGAGFVGSNLVKRLLE 54
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 32.9 bits (75), Expect = 0.005
Identities = 6/22 (27%), Positives = 12/22 (54%)
Query: 53 QTVFITGATGFLGSLLVEKLLR 74
+ + GATG++G + + L
Sbjct: 5 SRILLIGATGYIGRHVAKASLD 26
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 32.9 bits (76), Expect = 0.005
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 55 VFITGATGFLGSLLVEKLLR 74
+ +TG TGFLG +VE +
Sbjct: 5 IAVTGGTGFLGQYVVESIKN 24
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase,
carbohydrate metabolism, stress response; HET: NAP ADP
BMA; 2.36A {Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 32.6 bits (75), Expect = 0.006
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 51 KDQTVFITGATGFLGSLLVEKLLR 74
+ + + +TG GF+GS +V+ L
Sbjct: 45 EGRMIIVTGGAGFIGSNIVKALND 68
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 32.2 bits (73), Expect = 0.010
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 53 QTVFITGATGFLGSLLVEKLLR 74
+ I G TG +G +V ++
Sbjct: 3 NKILILGPTGAIGRHIVWASIK 24
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 32.2 bits (73), Expect = 0.010
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 53 QTVFITGATGFLGSLLVEKLLR 74
V I G TG++G +V +
Sbjct: 5 SRVLIVGGTGYIGKRIVNASIS 26
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short
chain dehydrogenase reductase, flavonoi oxidoreductase;
HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A*
3i6q_A*
Length = 346
Score = 31.9 bits (72), Expect = 0.011
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 53 QTVFITGATGFLGSLLVEKLLR 74
V I GATGF+G + L
Sbjct: 11 GRVLIAGATGFIGQFVATASLD 32
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd
reductase, NADP binding; 1.40A {Emericella nidulans}
SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A*
2vus_A 2vut_A* 2vuu_A*
Length = 352
Score = 31.7 bits (72), Expect = 0.014
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 52 DQTVFITGATGFLGSLLVEKLLR 74
+T+ + GATG G+ L+
Sbjct: 5 KKTIAVVGATGRQGASLIRVAAA 27
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 31.8 bits (72), Expect = 0.015
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 55 VFITGATGFLGSLLVEKLL 73
+ ITGA GF+G L L
Sbjct: 3 IVITGAKGFVGKNLKADLT 21
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid
decarboxylase, structural genomics, STRU genomics
consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo
sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*
Length = 343
Score = 31.6 bits (72), Expect = 0.016
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 53 QTVFITGATGFLGSLLVEKLLR 74
+ + ITG GF+GS L +KL+
Sbjct: 28 KRILITGGAGFVGSHLTDKLMM 49
>2wm3_A NMRA-like family domain containing protein 1; unknown function;
HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A*
3dxf_A 3e5m_A
Length = 299
Score = 31.2 bits (71), Expect = 0.019
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 54 TVFITGATGFLGSLLVEKLLR 74
V + G TG G + LL
Sbjct: 7 LVVVFGGTGAQGGSVARTLLE 27
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain
dehydrogenase/reductase, rossmann fold, oxidoreductase;
HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Length = 321
Score = 31.0 bits (71), Expect = 0.022
Identities = 9/30 (30%), Positives = 11/30 (36%)
Query: 44 SPIQEFYKDQTVFITGATGFLGSLLVEKLL 73
S + ITG GF+G L L
Sbjct: 4 SHHHHHHGSMRALITGVAGFVGKYLANHLT 33
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA;
3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Length = 660
Score = 30.8 bits (70), Expect = 0.028
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 45 PIQEFYKDQTVFITGATGFLGSLLVEKLLR 74
P + V I G GF+G+ L E+LLR
Sbjct: 308 PACTARRRTRVLILGVNGFIGNHLTERLLR 337
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 30.6 bits (69), Expect = 0.031
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 53 QTVFITGATGFLGSLLVEKLLR 74
+ I G TG++G+ +V+ L+
Sbjct: 12 SKILIFGGTGYIGNHMVKGSLK 33
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP;
1.80A {Clarkia breweri}
Length = 321
Score = 30.7 bits (69), Expect = 0.032
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 53 QTVFITGATGFLGSLLVEKLLR 74
+ + I G TG++G +V L
Sbjct: 5 EKIIIYGGTGYIGKFMVRASLS 26
>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose
4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis}
PDB: 3icp_A* 3aw9_A*
Length = 312
Score = 29.8 bits (68), Expect = 0.073
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 55 VFITGATGFLGSLLVEKLLR 74
+ +TG GF+GS LV+KL+
Sbjct: 3 IVVTGGAGFIGSHLVDKLVE 22
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase,
epimerization, oxidoreductase; 1.88A {Streptomyces
venezuelae}
Length = 525
Score = 29.7 bits (67), Expect = 0.079
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 54 TVFITGATGFLGSLLVEKLLR 74
TV +TGA + +L R
Sbjct: 253 TVLVTGAEEPAAAEAARRLAR 273
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.082
Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 23/66 (34%)
Query: 5 MSDELLKNSNDKNGEPSV--IWDKLDKEDDAE------DIIWDDDTPSPIQEFYKDQTVF 56
M +L K S + +W++ D DI+ ++ P + T+
Sbjct: 1631 MGMDLYKTS------KAAQDVWNRADNHFKDTYGFSILDIVINN--P-------VNLTIH 1675
Query: 57 ITGATG 62
G G
Sbjct: 1676 FGGEKG 1681
Score = 28.1 bits (62), Expect = 0.33
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
Query: 21 SVIWDKLDKE-DDAEDIIWDDDTPSPIQEFYKDQTVFITGATGFLGSLLVEK 71
S + ++ +K + + DD P+ E F+ G++ S LVE
Sbjct: 31 SQLQEQFNKILPEPTEGFAADDEPTTPAELV---GKFL----GYVSS-LVEP 74
>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; HET: NAD; 1.87A {Archaeoglobus
fulgidus}
Length = 313
Score = 29.4 bits (67), Expect = 0.085
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 54 TVFITGATGFLGSLLVEKLLR 74
+ +TG GF+GS +V+KL
Sbjct: 3 LIVVTGGAGFIGSHVVDKLSE 23
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 29.5 bits (67), Expect = 0.089
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 55 VFITGATGFLGSLLVEKLLR 74
+ +TG GF+GS +V+ L
Sbjct: 2 IIVTGGAGFIGSNIVKALND 21
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Length = 324
Score = 29.3 bits (66), Expect = 0.11
Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 51 KDQTVFITGA-TGFLGSLLVEKLLR 74
+ + ITGA +GF G L E L
Sbjct: 4 SKKIILITGASSGF-GRLTAEALAG 27
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 28.9 bits (64), Expect = 0.13
Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 6 SDELLKNSNDKNGEPSVIWDKLDKEDDAEDIIWDDDTPS-PIQEFYKDQ 53
+E+L + N+ + D+L+K+ WD + +Q F+K
Sbjct: 180 PNEILFSENNDMDNNNDGVDELNKKCT----FWDAISKLYYVQFFFKQA 224
>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase,
oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora
erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*
Length = 486
Score = 28.5 bits (64), Expect = 0.17
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 42 TPSPIQEFYKDQTVFITGATGFLGSLLVEKLLR 74
P+ E+ TV +TG TG +G + L R
Sbjct: 216 APATDDEWKPTGTVLVTGGTGGVGGQIARWLAR 248
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET:
NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Length = 311
Score = 28.6 bits (65), Expect = 0.19
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 54 TVFITGATGFLGSLLVEKLLR 74
V +TG GF+GS +VE LL
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLA 22
>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces
nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*
Length = 496
Score = 28.5 bits (64), Expect = 0.21
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 41 DTPSPIQEFYKDQTVFITGATGFLGSLLVEKLLR 74
P + +V +TG TG +G + +L
Sbjct: 228 AVPGSGKRPPVHGSVLVTGGTGGIGGRVARRLAE 261
>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics,
midwest center for structural genomics, protein
structure initiative; 2.00A {Streptomyces avermitilis}
Length = 281
Score = 28.0 bits (63), Expect = 0.25
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 53 QTVFITGA-TGFLGSLLVEKLLR 74
+ +TGA +GF G + E +
Sbjct: 6 KVWLVTGASSGF-GRAIAEAAVA 27
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, protein-nucleotide comple binding
protein; HET: NAD UDP; 2.00A {Bordetella
bronchiseptica} PDB: 2pzl_A* 2pzk_A*
Length = 330
Score = 27.9 bits (63), Expect = 0.32
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 54 TVFITGATGFLGSLLVEKLLR 74
+ ITG G LGS L+E L
Sbjct: 22 RILITGGAGCLGSNLIEHWLP 42
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.9 bits (62), Expect = 0.35
Identities = 11/26 (42%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 50 YKDQTVFITGAT-GFLGSLLVEKLLR 74
+KD+ V ITGA G +G+ +++ LL+
Sbjct: 474 FKDKYVLITGAGKGSIGAEVLQGLLQ 499
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase;
2.25A {Homo sapiens} PDB: 2ydx_A
Length = 315
Score = 27.2 bits (61), Expect = 0.50
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 54 TVFITGATGFLGSLLVEKL 72
V +TGATG LG + ++
Sbjct: 4 RVLVTGATGLLGRAVHKEF 22
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 27.5 bits (61), Expect = 0.51
Identities = 8/34 (23%), Positives = 11/34 (32%)
Query: 42 TPSPIQEFYKDQTVFITGATGFLGSLLVEKLLRC 75
T ++ ITG G G L + L
Sbjct: 1874 TGLSKTFCPPHKSYVITGGLGGFGLQLAQWLRLR 1907
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.5 bits (60), Expect = 0.56
Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 21 SVIWDKLDKEDDAEDIIWDDDTPSPIQEFYKDQTVFI 57
S+IW + K D ++ S +++ K+ T+ I
Sbjct: 393 SLIWFDVIKSDV-MVVVNKLHKYSLVEKQPKESTISI 428
Score = 27.5 bits (60), Expect = 0.57
Identities = 10/84 (11%), Positives = 26/84 (30%), Gaps = 19/84 (22%)
Query: 8 ELLKNSNDKNGEPSVIWD-----KLDKEDDAEDIIWDDDTPSPIQEFYKDQTVF-----I 57
E +++ WD DK + + P+ ++ + +VF I
Sbjct: 335 ESIRDGLAT-------WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 58 TGATGFLGSLLVEKLLRCCPQMLS 81
L + + + +++
Sbjct: 388 PTIL--LSLIWFDVIKSDVMVVVN 409
Score = 25.6 bits (55), Expect = 2.3
Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 17/68 (25%)
Query: 3 SEMSDELLKNSNDKNGEPSVIWDKLDKEDDA-----EDII-----W-------DDDTPSP 45
E D ++ + + +G + W L K+++ E+++ + + PS
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 46 IQEFYKDQ 53
+ Y +Q
Sbjct: 108 MTRMYIEQ 115
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 26.9 bits (60), Expect = 0.63
Identities = 5/24 (20%), Positives = 12/24 (50%)
Query: 51 KDQTVFITGATGFLGSLLVEKLLR 74
+ + + G +G LG+ +V+
Sbjct: 21 MSKNILVLGGSGALGAEVVKFFKS 44
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP
COA; 1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 26.8 bits (60), Expect = 0.66
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 33 AEDIIWDDDTPSPIQEF----YKDQTVFITGATGFLGSLLVEKLLR 74
D+ DD P+ F +D+ FITG +G + E +R
Sbjct: 4 PPDVEGDDCLPAYRHLFCPDLLRDKVAFITGGGSGIGFRIAEIFMR 49
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 26.7 bits (58), Expect = 0.73
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 10/50 (20%)
Query: 14 NDKNGEPSVI--W--------DKLDKEDDAEDIIWDDDTPSPIQEFYKDQ 53
+ EP I W +LD + W + ++E+ + Q
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQ 127
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2;
short-chain dehydrogenase/reductase, rossman fold; 1.95A
{Streptomyces fradiae}
Length = 511
Score = 26.7 bits (59), Expect = 0.83
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 42 TPSPIQEFYKDQTVFITGATGFLGSLLVEKLLR 74
+ + TV ITG G +G L +L
Sbjct: 249 AAAGAASWQPSGTVLITGGMGAIGRRLARRLAA 281
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 26.8 bits (60), Expect = 0.86
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 54 TVFITGATGFLGSLLVEKLLR 74
+ ITG GFLGS L L
Sbjct: 3 KLLITGGCGFLGSNLASFALS 23
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 26.7 bits (59), Expect = 0.92
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 21 SVIWDKLDKEDDA---EDIIWDDDTPSPIQEFYKDQTVFITGATGFLGS 66
++D +DK A + D++ + T FI GA F G
Sbjct: 418 GKVFDVMDKGSGAVVVTNSESFDESGRLL--VRNQSTTFIVGAGKFGGK 464
>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones,
alternative binding mode, oxidoreductase; HET: TES;
1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A*
1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A*
3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A*
3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...
Length = 327
Score = 26.2 bits (58), Expect = 1.2
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 2/27 (7%)
Query: 53 QTVFITGA-TGFLGSLLVEKLLRCCPQ 78
V ITG +G G L +L Q
Sbjct: 3 TVVLITGCSSGI-GLHLAVRLASDPSQ 28
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo
sapiens} SCOP: c.2.1.2
Length = 272
Score = 26.1 bits (58), Expect = 1.2
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 34 EDIIWDDDTPSPIQEFYKDQTVFITGATGFLGSLLVEKLLR 74
E++ + P + + V ITGA +G L + +
Sbjct: 14 ENLYFQGHMPKRRKSV-TGEIVLITGAGHGIGRLTAYEFAK 53
>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for
infectious disease, ssgcid, isomerase, NAD; HET: NAD
GUD; 1.90A {Burkholderia pseudomallei 1710B}
Length = 341
Score = 26.3 bits (59), Expect = 1.3
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 51 KDQTVFITGATGFLGS 66
T+ +TG G++GS
Sbjct: 4 TKGTILVTGGAGYIGS 19
>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP;
1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A*
1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*
Length = 321
Score = 26.0 bits (58), Expect = 1.3
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 51 KDQTVFITGATGFLGSLLVEKL 72
Q VFI G G +GS + +L
Sbjct: 2 AKQRVFIAGHRGMVGSAIRRQL 23
>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism,
isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces
cerevisiae} SCOP: b.30.5.4 c.2.1.2
Length = 699
Score = 25.8 bits (57), Expect = 1.6
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 51 KDQTVFITGATGFLGS 66
+ V +TG G++GS
Sbjct: 10 TSKIVLVTGGAGYIGS 25
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 26.0 bits (58), Expect = 1.6
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 51 KDQTVFITGATGFLGSLLVEKLLR 74
+ +TGA LG L L+
Sbjct: 2 SLGHIIVTGAGSGLGRALTIGLVE 25
>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase,
galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo
sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A*
1i3l_A* 1i3m_A* 1i3n_A*
Length = 348
Score = 25.5 bits (57), Expect = 1.8
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 53 QTVFITGATGFLGS 66
+ V +TG G++GS
Sbjct: 3 EKVLVTGGAGYIGS 16
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain
dehydrogenase/reductase, rossmann fold, BIO protein;
HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Length = 404
Score = 25.5 bits (56), Expect = 2.0
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 54 TVFITGATGFLGSLLVEKLL 73
V + G G+ G L
Sbjct: 13 RVMVIGGDGYCGWATALHLS 32
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 25.6 bits (56), Expect = 2.1
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 53 QTVFITGATGFLGSLLV 69
V I GA+G LGS +
Sbjct: 222 DIVLIWGASGGLGSYAI 238
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha,
beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus
tokodaii}
Length = 273
Score = 25.2 bits (56), Expect = 2.5
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 55 VFITGATGFLGSLLVEKL 72
ITGA+G LG L L
Sbjct: 3 TLITGASGQLGIELSRLL 20
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 25.3 bits (56), Expect = 2.6
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 51 KDQTVFITGATGFLGSLLVEKLLR 74
V + G G LGS ++E +
Sbjct: 2 SSGKVIVYGGKGALGSAILEFFKK 25
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A*
1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 24.9 bits (55), Expect = 3.0
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 51 KDQTVFITGATGFLGSLLVEKLLR 74
++ V A G +G +L++
Sbjct: 4 TNKNVIFVAALGGIGLDTSRELVK 27
>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG;
1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A*
1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A*
2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A*
1a9y_A*
Length = 338
Score = 25.1 bits (56), Expect = 3.1
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 54 TVFITGATGFLGS 66
V +TG +G++GS
Sbjct: 2 RVLVTGGSGYIGS 14
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2;
oxidoreductase, quinone oxidoreductase, medium-chain
dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens}
PDB: 2x1h_A* 2x7h_A* 2wek_A*
Length = 362
Score = 24.9 bits (55), Expect = 3.2
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 53 QTVFITGATGFLGSLLVE--KLLRC 75
+ V +T A G G ++ K +C
Sbjct: 165 KKVLVTAAAGGTGQFAMQLSKKAKC 189
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide,
receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}
Length = 375
Score = 25.1 bits (55), Expect = 3.3
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 51 KDQTVFITGATGFLGSLLV 69
+ V I GA+G +G+ +
Sbjct: 183 TGKRVLILGASGGVGTFAI 201
>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX
NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB:
1ker_A* 1ket_A* 1kep_A*
Length = 348
Score = 24.8 bits (55), Expect = 3.6
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 53 QTVFITGATGFLGSLLVEKLLRCCP 77
+ + +TG GF+GS V + P
Sbjct: 5 KNIIVTGGAGFIGSNFVHYVYNNHP 29
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 24.8 bits (55), Expect = 3.7
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 20 PSVIWDKLDKEDDAEDIIWDDDTPSPIQEFYKDQTVFITGATGFLGSL 67
P+ L + D E WD D P P +E + + GA G L L
Sbjct: 18 PAEGRVALARAADCEVEQWDSDEPIPAKELERG----VAGAHGLLCLL 61
>2jah_A Clavulanic acid dehydrogenase; short-chain
dehydrogenase/reductase, lactamase inhibitor, AN
biosynthesis, NADPH, oxidoreductase; HET: MSE NDP;
1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Length = 247
Score = 24.8 bits (55), Expect = 3.7
Identities = 5/14 (35%), Positives = 8/14 (57%), Gaps = 1/14 (7%)
Query: 51 KDQTVFITGAT-GF 63
+ + ITGA+ G
Sbjct: 6 QGKVALITGASSGI 19
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 24.8 bits (55), Expect = 3.8
Identities = 6/14 (42%), Positives = 9/14 (64%), Gaps = 1/14 (7%)
Query: 51 KDQTVFITGAT-GF 63
D+ + ITGA+ G
Sbjct: 3 MDKVILITGASGGI 16
>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium,
rossman-fold, short-chain dehydrogenase/reductase, SDR,
structural genomics,lyase; HET: NDP GDP; 1.84A {Homo
sapiens} SCOP: c.2.1.2
Length = 375
Score = 24.9 bits (55), Expect = 4.1
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 43 PSPIQEFYKDQTVFITGATGFLGSLLVEKLL 73
+ + + ITG TG GS L E LL
Sbjct: 15 ENKYFQGHMRNVALITGITGQDGSYLAEFLL 45
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory
protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB:
1jhz_A
Length = 289
Score = 24.4 bits (54), Expect = 4.7
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 1 MLSEMSDELLKNSNDKNGEPSVIWDKLDKEDDAEDIIWDDD 41
M SE + LL + P V+ D + + D D + D+
Sbjct: 70 MCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNA 110
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for
structural genomics of infectio diseases, csgid, niaid;
HET: NAD SUC; 3.00A {Bacillus anthracis}
Length = 346
Score = 24.4 bits (54), Expect = 5.1
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 54 TVFITGATGFLGSLLVEKLLRCCP 77
+ +TG GF+GS V +L+
Sbjct: 26 NILVTGGAGFIGSNFVHYMLQSYE 49
>1qpz_A PURA, protein (purine nucleotide synthesis repressor);
transcription regulation, DNA-binding, purine
biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli}
SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A*
1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A*
1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A*
2pud_A* 1jfs_A* 1jh9_A* ...
Length = 340
Score = 24.4 bits (54), Expect = 5.4
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 1 MLSEMSDELLKNSNDKNGEPSVIWDKLDKEDDAEDIIWDDD 41
M SE + LL + P V+ D + + D D + D+
Sbjct: 121 MCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNA 161
>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing,
cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A
{Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A*
2w4q_A* 1vj1_A 2zb3_A*
Length = 357
Score = 24.1 bits (53), Expect = 6.5
Identities = 6/16 (37%), Positives = 12/16 (75%)
Query: 52 DQTVFITGATGFLGSL 67
++T+ ++GA G GS+
Sbjct: 161 NKTMVVSGAAGACGSV 176
>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A
{Escherichia coli} SCOP: c.2.1.2
Length = 372
Score = 24.2 bits (53), Expect = 6.7
Identities = 11/18 (61%), Positives = 11/18 (61%)
Query: 56 FITGATGFLGSLLVEKLL 73
ITG TG GS L E LL
Sbjct: 5 LITGVTGQDGSYLAEFLL 22
>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.87A {Shigella flexneri}
Length = 319
Score = 24.1 bits (53), Expect = 6.9
Identities = 6/37 (16%), Positives = 12/37 (32%), Gaps = 5/37 (13%)
Query: 30 EDDAEDIIWDDDTPSPIQEFYKD---QTVFIT-GATG 62
DD + +W + + + V + GA
Sbjct: 200 LDDED-ALWGQQPVEDVIARTHNAGVKEVVVKRGADS 235
>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain
dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A
{Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*
Length = 381
Score = 24.2 bits (53), Expect = 6.9
Identities = 11/18 (61%), Positives = 11/18 (61%)
Query: 56 FITGATGFLGSLLVEKLL 73
ITG TG GS L E LL
Sbjct: 32 LITGITGQDGSYLTEFLL 49
>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain
dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A
{Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*
Length = 337
Score = 24.0 bits (53), Expect = 7.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 55 VFITGATGFLGSLLVEKLLR 74
+ +TG GF+GS V +LL
Sbjct: 3 LLVTGGAGFIGSHFVRQLLA 22
>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET:
TYD NAD; 1.80A {Salmonella enterica subsp} SCOP:
c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*
Length = 361
Score = 24.0 bits (53), Expect = 7.8
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 55 VFITGATGFLGSLLVEKLLR 74
+ ITG GF+GS +V +++
Sbjct: 3 ILITGGAGFIGSAVVRHIIK 22
>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase,
rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas
aeruginosa} SCOP: c.2.1.2
Length = 335
Score = 23.7 bits (52), Expect = 8.6
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 56 FITGATGFLGSLLVEKLL 73
+TG TG G+ L + LL
Sbjct: 18 LVTGITGQDGAYLAKLLL 35
>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase,
lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A
{Aquifex aeolicus} PDB: 2z95_A*
Length = 345
Score = 23.7 bits (52), Expect = 9.9
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 56 FITGATGFLGSLLVEKLL 73
ITG G G+ L + LL
Sbjct: 7 LITGIRGQDGAYLAKLLL 24
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.137 0.412
Gapped
Lambda K H
0.267 0.0763 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,277,338
Number of extensions: 64667
Number of successful extensions: 368
Number of sequences better than 10.0: 1
Number of HSP's gapped: 367
Number of HSP's successfully gapped: 117
Length of query: 84
Length of database: 6,701,793
Length adjustment: 52
Effective length of query: 32
Effective length of database: 5,249,901
Effective search space: 167996832
Effective search space used: 167996832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.4 bits)