RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy818
(214 letters)
>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase,
UBL conjugation pathway, structural genomics consortium
(SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1
Length = 187
Score = 218 bits (558), Expect = 4e-73
Identities = 120/163 (73%), Positives = 137/163 (84%)
Query: 8 ATARLKQDYMKLKKDPIPYVIAEPNPANILEWFYVVIGPENTQYEGGMYLGKLVFPRDFP 67
AT RLKQDY+++KKDP+PY+ AEP P+NILEW YVV GPE T YEGG Y GKL+FPR+FP
Sbjct: 15 ATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFP 74
Query: 68 FKPPSIYMITPNGRFKTNTRLCLSMSDFHPDTWNPAWSVSTILTGLLSFMVERSPTLGSI 127
FKPPSIYMITPNGRFK NTRLCLS++DFHPDTWNPAWSVSTILTGLLSFMVE+ PTLGSI
Sbjct: 75 FKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSI 134
Query: 128 EMSDYERRQLAARSLRFNLNDKNFCELFPDLVQSISPGLVKSQ 170
E SD+ +RQLA +SL FNL DK FCELFP++V+ I
Sbjct: 135 ETSDFTKRQLAVQSLAFNLKDKVFCELFPEVVEEIKQKQKAQD 177
>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation;
2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 169
Score = 101 bits (253), Expect = 2e-27
Identities = 40/123 (32%), Positives = 65/123 (52%), Gaps = 12/123 (9%)
Query: 1 MSSKHCGATARLKQDYMKLKKDPIPYVIAEPNPANILEWFYVVIGPENTQYEGGMYLGKL 60
MS+ A RL +D+ ++K+D P V A P P N++ W ++IGP +T YE G + L
Sbjct: 1 MSTP---ARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLL 57
Query: 61 VFPRDFPFKPPSIYMIT----PNGRFKTNTRLCLSMSDFHPDTWNPAWSVSTILTGLLSF 116
F ++P KPP + ++ PN N +CL + + W P + V++ILT + S
Sbjct: 58 EFDEEYPNKPPHVKFLSEMFHPN--VYANGEICLDILQ---NRWTPTYDVASILTSIQSL 112
Query: 117 MVE 119
+
Sbjct: 113 FND 115
>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase;
2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A
2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A
Length = 152
Score = 100 bits (251), Expect = 3e-27
Identities = 38/123 (30%), Positives = 66/123 (53%), Gaps = 12/123 (9%)
Query: 1 MSSKHCGATARLKQDYMKLKKDPIPYVIAEPNPANILEWFYVVIGPENTQYEGGMYLGKL 60
MS+ A RL +D+ +L++DP + P NI+ W V+ GP++T ++GG + L
Sbjct: 1 MST---PARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSL 57
Query: 61 VFPRDFPFKPPSIYMIT----PNGRFKTNTRLCLSMSDFHPDTWNPAWSVSTILTGLLSF 116
F D+P KPP++ ++ PN + +CL D + W+P + V+ ILT + S
Sbjct: 58 QFSEDYPNKPPTVRFVSRMFHPN--IYADGSICL---DILQNQWSPIYDVAAILTSIQSL 112
Query: 117 MVE 119
+ +
Sbjct: 113 LCD 115
>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin
carrier protein, thioester ligase; 2.00A {Spisula
solidissima} SCOP: d.20.1.1
Length = 156
Score = 100 bits (250), Expect = 4e-27
Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
Query: 2 SSKHCGATARLKQDYMKLKKDPIPYVIAEPNPANILEWFYVVIGPENTQYEGGMYLGKLV 61
S + + RL+Q+ L P + A P+ N+ +W + GP++T YE Y L
Sbjct: 4 SKERHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLE 63
Query: 62 FPRDFPFKPPSIYMIT----PNGRFKTNTRLCLSMSDFHPDTWNPAWSVSTILTGLLSFM 117
FP D+P+KPP + T PN + +CL D + W ++ V TIL L S +
Sbjct: 64 FPSDYPYKPPVVKFTTPCWHPN--VDQSGNICL---DILKENWTASYDVRTILLSLQSLL 118
Query: 118 VE 119
E
Sbjct: 119 GE 120
>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown
function, structural genomics consortium, SGC; 2.80A
{Plasmodium falciparum 3D7}
Length = 136
Score = 99.3 bits (248), Expect = 6e-27
Identities = 32/117 (27%), Positives = 60/117 (51%), Gaps = 10/117 (8%)
Query: 8 ATARLKQDYMKLKKDPIPYVIAEPNPANILEWFYVVIGPENTQYEGGMYLGKLVFPRDFP 67
A R++++ K+P + +P+NI W +G ENT Y +Y K++FP ++P
Sbjct: 21 ANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYP 80
Query: 68 FKPPSIYMIT-----PNGRFKTNTRLCLSMSDFHPDTWNPAWSVSTILTGLLSFMVE 119
KPP +Y + + +N +CLS+ D +NP+ S+S ++ ++S +
Sbjct: 81 LKPPIVYFLQKPPKHTH--VYSNGDICLSVLG---DDYNPSLSISGLILSIISMLSS 132
>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics
consortium, SGC, ubiquitin- conjugating enzyme; 2.18A
{Homo sapiens} SCOP: d.20.1.1
Length = 169
Score = 100 bits (250), Expect = 6e-27
Identities = 30/123 (24%), Positives = 60/123 (48%), Gaps = 6/123 (4%)
Query: 1 MSSKHCGATARLKQDYMKLKKDPIPYVIAEPNPANILEWFYVVIGPENTQYEGGMYLGKL 60
S H A L +D+ LK++ + A+P +++EW + G +N+ ++G ++ +
Sbjct: 17 RGSMHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTI 76
Query: 61 VFPRDFPFKPPSIYMIT----PNGRFKTNTRLCLSMSDFHPDTWNPAWSVSTILTGLLSF 116
F ++ + PP + IT PN + C+ D +P+ WN +++S+IL L
Sbjct: 77 HFTSEYNYAPPVVKFITIPFHPN-VDPHTGQPCIDFLD-NPEKWNTNYTLSSILLALQVM 134
Query: 117 MVE 119
+
Sbjct: 135 LSN 137
>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics,
structural genomics consortium, unknown function; 1.86A
{Plasmodium vivax} SCOP: d.20.1.1
Length = 125
Score = 96.9 bits (242), Expect = 4e-26
Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 14/124 (11%)
Query: 1 MSSKHCGATARLKQDYMKLKKDPIPYVIAEPNPANILEWFYVVIGPENTQYEGGMYLGKL 60
M + A R++++ +P + +P NI W +G ENT Y +Y K+
Sbjct: 4 MGN----ANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKI 59
Query: 61 VFPRDFPFKPPSIYMIT-----PNGRFKTNTRLCLSMSDFHPDTWNPAWSVSTILTGLLS 115
+FP D+P KPP +Y + + +N +CLS+ D +NP+ S+S ++ ++S
Sbjct: 60 IFPDDYPLKPPIVYFLQKPPKHTH--VYSNGDICLSLLG---DDYNPSLSISGLVLSIIS 114
Query: 116 FMVE 119
+
Sbjct: 115 MLSS 118
>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein
complex, E3 ligase, ubiquitiny TPR, heat-shock protein;
2.9A {Homo sapiens} SCOP: d.20.1.1
Length = 154
Score = 97.3 bits (243), Expect = 5e-26
Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 9/120 (7%)
Query: 7 GATARLKQDYMKLKKDPIPYVIAEPNPANILEWFYVVIGPENTQYEGGMYLGKLVFPRDF 66
G R+ ++ +L +P+P + AEP+ +N + V+ GP+++ +EGG + +L P ++
Sbjct: 5 GLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEY 64
Query: 67 PFKPPSIYMIT----PNGRFKTNTRLCLSMSDFHPDTWNPAWSVSTILTGLLSFMVERSP 122
P P + +T PN R+CL D D W+PA + T+L + + + +P
Sbjct: 65 PMAAPKVRFMTKIYHPN--VDKLGRICL---DILKDKWSPALQIRTVLLSIQALLSAPNP 119
>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens}
SCOP: d.20.1.1
Length = 179
Score = 97.8 bits (244), Expect = 6e-26
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 9/117 (7%)
Query: 7 GATARLKQDYMKLKKDPIPYVIAEPNPANILEWFYVVIGPENTQYEGGMYLGKLVFPRDF 66
RL+Q+ M L + A P N+ +W + G T YE Y L FP +
Sbjct: 30 PVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGY 89
Query: 67 PFKPPSIYMIT----PNGRFKTNTRLCLSMSDFHPDTWNPAWSVSTILTGLLSFMVE 119
P+ P++ +T PN T + L D + W+ + V TIL + S + E
Sbjct: 90 PYNAPTVKFLTPCYHPN--VDTQGNISL---DILKEKWSALYDVRTILLSIQSLLGE 141
>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase,
UBL conjugation pathway, endo reticulum, membrane,
metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A
2kly_A
Length = 164
Score = 97.4 bits (243), Expect = 7e-26
Identities = 42/163 (25%), Positives = 71/163 (43%), Gaps = 28/163 (17%)
Query: 8 ATARLKQDYMKLKKDPIPYVIAEP-NPANILEWFYVVIGPENTQYEGGMYLGKLVFPRDF 66
A RL +Y +L +P ++A P N N EW +++GPE+T +E G++ L FP D+
Sbjct: 4 ALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDY 63
Query: 67 PFKPPSIYMIT----PNGRFKTNTRLCLS----------MSDFHPDTWNPAWSVSTILTG 112
P PP + PN + R+C+S + + W+P SV IL
Sbjct: 64 PLSPPKMRFTCEMFHPN--IYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLS 121
Query: 113 LLSFMVE---RSPTLGSI------EMSDYER--RQLAARSLRF 144
++S + E S + + + +Q+ +SL
Sbjct: 122 VVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKSLGL 164
>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo
sapiens} SCOP: d.20.1.1
Length = 158
Score = 96.9 bits (242), Expect = 8e-26
Identities = 27/123 (21%), Positives = 50/123 (40%), Gaps = 9/123 (7%)
Query: 1 MSSKHCGATARLKQDYMKLKKDPIPYVIAEPNPANILEWFYVVIGPENTQYEGGMYLGKL 60
+ + + ++ L DP + PN ++ + + GPE T Y GG++ KL
Sbjct: 7 VENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKL 66
Query: 61 VFPRDFPFKPPSIYMIT----PNGRFKTNTRLCLSMSDFHPDTWNPAWSVSTILTGLLSF 116
+ +DFP PP Y +T PN N +C+ + W + +L +
Sbjct: 67 LLGKDFPASPPKGYFLTKIFHPN--VGANGEICV---NVLKRDWTAELGIRHVLLTIKCL 121
Query: 117 MVE 119
++
Sbjct: 122 LIH 124
>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle,
nucleotide-binding, UBL CON pathway; 2.50A {Homo
sapiens} PDB: 2edi_A
Length = 167
Score = 97.0 bits (242), Expect = 9e-26
Identities = 23/125 (18%), Positives = 46/125 (36%), Gaps = 9/125 (7%)
Query: 2 SSKHCGATARLKQDYMKLKKDPIPYVIAEPNPANILEWFYVVIGPENTQYEGGMYLGKLV 61
+ + L ++ +L+ + N L F + + P+ Y+GG + +
Sbjct: 9 TRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETE 68
Query: 62 FPRDFPFKPPSIYMIT----PNGRFKTNTRLCLSM---SDFHPDTWNPAWSVSTILTGLL 114
P + PP + +T PN +CLS+ W P ++ ++ GL
Sbjct: 69 VPDAYNMVPPKVKCLTKIWHPN--ITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLN 126
Query: 115 SFMVE 119
S +
Sbjct: 127 SLFTD 131
>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas
conjugation pathway, structural genomics, structural
genomi consortium; 1.85A {Plasmodium falciparum} PDB:
3e95_A
Length = 149
Score = 95.8 bits (239), Expect = 2e-25
Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 7 GATARLKQDYMKLKKDPIPYVIAEPNPANILEWFYVVIGPENTQYEGGMYLGKLVFPRDF 66
G R+ ++ L +P P ++A P P N + ++ GP+ T YEGG Y +L P +
Sbjct: 1 GIPRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQY 60
Query: 67 PFKPPSIYMIT----PNGRFKTNTRLCLSMSDFHPDTWNPAWSVSTILTGLLSFMVE 119
P +PP + +T PN R+CL D D W+PA + T+L + + +
Sbjct: 61 PMEPPKVRFLTKIYHPN--IDKLGRICL---DILKDKWSPALQIRTVLLSIQALLSS 112
>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural
genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo
sapiens} SCOP: d.20.1.1
Length = 169
Score = 96.3 bits (240), Expect = 2e-25
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
Query: 8 ATARLKQDYMKLKKDPIPYVIAEPNPANILEWFYVVIGPENTQYEGGMYLGKLVFPRDFP 67
+RLK++ L +P P + + + + ++G NT YE G++ +++ P +P
Sbjct: 5 RASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYP 64
Query: 68 FKPPSIYMIT----PNGRFKTNTRLCLSM-SDFHPDTWNPAWSVSTILTGLLSFMVE 119
F+PP I +T PN + R+CL + W P+ +++T+LT + M E
Sbjct: 65 FEPPQIRFLTPIYHPN--IDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSE 119
>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC,
ligase; 1.90A {Plasmodium yoelii}
Length = 216
Score = 97.5 bits (243), Expect = 2e-25
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 8/123 (6%)
Query: 1 MSSKHCGATARLKQDYMKLKKDPIPYVIAEPNPANILEWFYVVIGPENTQYEGGMYLGKL 60
+ + RL+++ ++ + + + A +N EW + GPE T YEGG + +
Sbjct: 17 LYFQGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAI 76
Query: 61 VFPRDFPFKPPSIYMIT----PNGRFKTNTRLCLSMSDFHPDTWNPAWSVSTILTGLLSF 116
P D+P+ PP I +T PN +T +CL D + W+PA ++ T L + +
Sbjct: 77 TIPNDYPYNPPKIKFVTKIWHPNISSQTG-AICL---DVLKNEWSPALTIRTALLSIQAL 132
Query: 117 MVE 119
+ +
Sbjct: 133 LSD 135
>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens}
SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A
Length = 155
Score = 95.8 bits (239), Expect = 2e-25
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 10/117 (8%)
Query: 8 ATARLKQDYMKLKKDPIPYVIAEP-NPANILEWFYVVIGPENTQYEGGMYLGKLVFPRDF 66
A+ R+ ++ L+K P PY+ + AN+L W + ++ P+ Y + ++ FP ++
Sbjct: 5 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVW-HALLLPDQPPYHLKAFNLRISFPPEY 63
Query: 67 PFKPPSIYMIT----PNGRFKTNTRLCLSMSDFHPDTWNPAWSVSTILTGLLSFMVE 119
PFKPP I T PN N ++CL + + W P +L L +
Sbjct: 64 PFKPPMIKFTTKIYHPN--VDENGQICLPI--ISSENWKPCTKTCQVLEALNVLVNR 116
>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway,
structural genomics, protein structure initiative; 1.10A
{Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A
2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B
3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D
4ddi_D 1x23_A 3rpg_A 2fuh_A ...
Length = 150
Score = 95.4 bits (238), Expect = 3e-25
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 9/116 (7%)
Query: 8 ATARLKQDYMKLKKDPIPYVIAEPNPANILEWFYVVIGPENTQYEGGMYLGKLVFPRDFP 67
A R++++ L +DP A P ++ W ++GP + Y+GG++ + FP D+P
Sbjct: 5 ALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYP 64
Query: 68 FKPPSIYMIT----PNGRFKTNTRLCLSMSDFHPDTWNPAWSVSTILTGLLSFMVE 119
FKPP + T PN +N +CL D W+PA ++S +L + S + +
Sbjct: 65 FKPPKVAFTTRIYHPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 115
>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme
domain, E2 domain, ligase-ligas inhibitor complex; HET:
U94; 2.30A {Homo sapiens} PDB: 2ob4_A
Length = 183
Score = 96.3 bits (240), Expect = 3e-25
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 19/134 (14%)
Query: 1 MSSKHCGATARLKQDYMKLKKDPIPYVIAEP-NPANILEWFYVVIGPENTQYEGGMYLGK 59
M S + L + L+++P+ + ++ W + GP NT YEGG + +
Sbjct: 3 MGSP--SSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKAR 60
Query: 60 LVFPRDFPFKPPSIYMIT----PNGRFKTNTRLCLS----------MSDFHPDTWNPAWS 105
L FP D+P+ PP+ +T PN +C+S + + WNP +
Sbjct: 61 LKFPIDYPYSPPAFRFLTKMWHPN--IYETGDVCISILHPPVDDPQSGELPSERWNPTQN 118
Query: 106 VSTILTGLLSFMVE 119
V TIL ++S + E
Sbjct: 119 VRTILLSVISLLNE 132
>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A
2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F
Length = 155
Score = 95.4 bits (238), Expect = 3e-25
Identities = 33/117 (28%), Positives = 57/117 (48%), Gaps = 9/117 (7%)
Query: 7 GATARLKQDYMKLKKDPIPYVIAEPNPANILEWFYVVIGPENTQYEGGMYLGKLVFPRDF 66
R+ ++ KL DP+P + AEP+ N+ + + GPE + YE G++ +L P D+
Sbjct: 5 SLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDY 64
Query: 67 PFKPPSIYMIT----PNGRFKTNTRLCLSMSDFHPDTWNPAWSVSTILTGLLSFMVE 119
P + P + +T PN R+CL D W+PA + T+L + + +
Sbjct: 65 PMEAPKVRFLTKIYHPN--IDRLGRICL---DVLKTNWSPALQIRTVLLSIQALLAS 116
>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural
genomics consortium, ubiquit ubiquitin-conjugating
enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP:
d.20.1.1
Length = 166
Score = 95.5 bits (238), Expect = 3e-25
Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 9/117 (7%)
Query: 7 GATARLKQDYMKLKKDPIPYVIAEPNPANILEWFYVVIGPENTQYEGGMYLGKLVFPRDF 66
GA R+ ++ L KDP A P ++ W ++GPE++ Y GG++ + FP D+
Sbjct: 21 GALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDY 80
Query: 67 PFKPPSIYMIT----PNGRFKTNTRLCLSMSDFHPDTWNPAWSVSTILTGLLSFMVE 119
PFKPP + T PN + +CL D D W+PA ++S +L + S + +
Sbjct: 81 PFKPPKVNFTTKIYHPN--INSQGAICL---DILKDQWSPALTISKVLLSISSLLTD 132
>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase,
yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1
Length = 165
Score = 95.1 bits (237), Expect = 4e-25
Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 31/170 (18%)
Query: 1 MSSKHCGATARLKQDYMKLKKDPIPYVIAEP-NPANILEWFYVVIGPENTQYEGGMYLGK 59
MS A RL ++ +L KD P ++A P + NI W ++ GP +T Y G++ K
Sbjct: 1 MSK---TAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAK 57
Query: 60 LVFPRDFPFKPPSIYMIT----PNGRFKTNTRLCLS----------MSDFHPDTWNPAWS 105
L FP+D+P PP + PN N +C+S M + + W+P S
Sbjct: 58 LEFPKDYPLSPPKLTFTPSILHPN--IYPNGEVCISILHSPGDDPNMYELAEERWSPVQS 115
Query: 106 VSTILTGLLSFMVE---RSPTLGSI------EMSDYER--RQLAARSLRF 144
V IL ++S + E S ++ER + +SL F
Sbjct: 116 VEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILKSLGF 165
>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL
conjugation pathway; HET: CME; 1.94A {Homo sapiens}
SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A
Length = 165
Score = 95.1 bits (237), Expect = 5e-25
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 9/116 (7%)
Query: 8 ATARLKQDYMKLKKDPIPYVIAEPNPANILEWFYVVIGPENTQYEGGMYLGKLVFPRDFP 67
A R+ ++ L +DP A P ++ W ++GP ++ Y+GG++ + FP D+P
Sbjct: 20 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 79
Query: 68 FKPPSIYMIT----PNGRFKTNTRLCLSMSDFHPDTWNPAWSVSTILTGLLSFMVE 119
FKPP + T PN +N +CL D W+PA ++S +L + S + +
Sbjct: 80 FKPPKVAFTTRIYHPN--INSNGSICL---DILRSQWSPALTISKVLLSICSLLCD 130
>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural
genomics consortium, (SGC), ligase; 1.82A {Homo sapiens}
SCOP: d.20.1.1
Length = 136
Score = 94.3 bits (235), Expect = 5e-25
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 13/123 (10%)
Query: 1 MSSKHCGATARLKQDYMKLKKDPIPYVIAEPNPA--NILEWFYVVIGPENTQYEGGMYLG 58
M+S RL+++ + L+ DP P + +I +W + G T YEG +
Sbjct: 20 MAS----MQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQL 75
Query: 59 KLVFPRDFPFKPPSIYMITPNGRF----KTNTRLCLSMSDFHPDTWNPAWSVSTILTGLL 114
F +PF P + N +N +CL + W+PA SV ++ ++
Sbjct: 76 LFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICL---SILTEDWSPALSVQSVCLSII 132
Query: 115 SFM 117
S +
Sbjct: 133 SML 135
>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation
pathway, structural genomics, structural genomics
consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB:
1pzv_A
Length = 172
Score = 95.2 bits (237), Expect = 6e-25
Identities = 34/127 (26%), Positives = 62/127 (48%), Gaps = 17/127 (13%)
Query: 8 ATARLKQDYMKLKKDPIPYVIAEP-NPANILEWFYVVIGPENTQYEGGMYLGKLVFPRDF 66
+ L++ +L K+P+ A + ++ W ++IGP +T YEGG++ L FP+D+
Sbjct: 18 GSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDY 77
Query: 67 PFKPPSIYMIT----PNGRFKTNTRLCLS----------MSDFHPDTWNPAWSVSTILTG 112
P +PP + IT PN N +C+S + + W P +V TI+
Sbjct: 78 PLRPPKMKFITEIWHPN--VDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMIS 135
Query: 113 LLSFMVE 119
++S + +
Sbjct: 136 VISMLAD 142
>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure,
elongated shape, E3 ubiquitin ligase, E2 ubiquitin
conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1
PDB: 1fbv_C* 3sy2_C 3sqv_C
Length = 154
Score = 93.9 bits (234), Expect = 1e-24
Identities = 30/117 (25%), Positives = 57/117 (48%), Gaps = 10/117 (8%)
Query: 8 ATARLKQDYMKLKKDPIPYVIAEP-NPANILEWFYVVIGPENTQYEGGMYLGKLVFPRDF 66
A+ RL ++ +++K + + AN+L W +I P+N Y+ G + ++ FP ++
Sbjct: 3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTW-QGLIVPDNPPYDKGAFRIEINFPAEY 61
Query: 67 PFKPPSIYMIT----PNGRFKTNTRLCLSMSDFHPDTWNPAWSVSTILTGLLSFMVE 119
PFKPP I T PN ++CL + + W PA ++ L++ + +
Sbjct: 62 PFKPPKITFKTKIYHPN--IDEKGQVCLPV--ISAENWKPATKTDQVIQSLIALVND 114
>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small
ubiquitin like modifer, SMT3, ligase; 1.30A {Homo
sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A
1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A*
1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A
Length = 161
Score = 93.5 bits (233), Expect = 2e-24
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 17/129 (13%)
Query: 1 MSSKHCGATARLKQDYMKLKKDPIPYVIAEP-----NPANILEWFYVVIGPENTQYEGGM 55
MS A +RL Q+ +KD +A P N++ W + G + T +EGG+
Sbjct: 4 MSGI---ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGL 60
Query: 56 YLGKLVFPRDFPFKPPSIYMIT----PNGRFKTNTRLCLSMSDFHPDT-WNPAWSVSTIL 110
+ +++F D+P PP PN + +CLS+ D W PA ++ IL
Sbjct: 61 FKLRMLFKDDYPSSPPKCKFEPPLFHPN--VYPSGTVCLSI--LEEDKDWRPAITIKQIL 116
Query: 111 TGLLSFMVE 119
G+ + E
Sbjct: 117 LGIQELLNE 125
>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium,
ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation
pathway; 1.60A {Homo sapiens} PDB: 1y6l_A
Length = 194
Score = 94.4 bits (235), Expect = 2e-24
Identities = 34/117 (29%), Positives = 58/117 (49%), Gaps = 9/117 (7%)
Query: 7 GATARLKQDYMKLKKDPIPYVIAEPNPANILEWFYVVIGPENTQYEGGMYLGKLVFPRDF 66
+ R++++ + DP P A P NI EW ++GP + YEGG++ + F ++
Sbjct: 48 TSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEY 107
Query: 67 PFKPPSIYMIT----PNGRFKTNTRLCLSMSDFHPDTWNPAWSVSTILTGLLSFMVE 119
PFKPP + T N + +CL D D W+PA ++S +L + S + +
Sbjct: 108 PFKPPKVTFRTRIYHCN--INSQGVICL---DILKDNWSPALTISKVLLSICSLLTD 159
>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3,
crystallography, ligase; 1.75A {Saccharomyces
cerevisiae} PDB: 2eke_A 3ong_B
Length = 157
Score = 93.1 bits (232), Expect = 3e-24
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 17/129 (13%)
Query: 1 MSSKHCGATARLKQDYMKLKKDPIPYVIAEP-----NPANILEWFYVVIGPENTQYEGGM 55
MSS RL+++ K +KD A+P ++ +W + G E T + GG+
Sbjct: 1 MSSL---CLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGV 57
Query: 56 YLGKLVFPRDFPFKPPSIYMIT----PNGRFKTNTRLCLSMSDFHPDT-WNPAWSVSTIL 110
Y + +P ++P KPP + PN + +CLS+ + D W PA ++ I+
Sbjct: 58 YPITVEYPNEYPSKPPKVKFPAGFYHPN--VYPSGTICLSI--LNEDQDWRPAITLKQIV 113
Query: 111 TGLLSFMVE 119
G+ +
Sbjct: 114 LGVQDLLDS 122
>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A
{Saccharomyces cerevisiae} PDB: 3tdi_C
Length = 190
Score = 92.5 bits (230), Expect = 8e-24
Identities = 30/127 (23%), Positives = 50/127 (39%), Gaps = 13/127 (10%)
Query: 1 MSSKHCGATARLKQDYMKLKKDPIPYVIAEPNPANILEW----FYVVIGPENTQYEGGMY 56
+ A RLK+D L P + +P + V++ P+ Y G
Sbjct: 23 IQPNLSAARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSI 82
Query: 57 LGKLVFPRDFPFKPPSIYMIT----PNGRFKTNTRLCLSMSDFHPDTWNPAWSVSTILTG 112
L F +P +PP + + PN +CL + + W+PA + +I+TG
Sbjct: 83 NFNLDFNEVYPIEPPKVVCLKKIFHPN--IDLKGNVCL---NILREDWSPALDLQSIITG 137
Query: 113 LLSFMVE 119
LL +E
Sbjct: 138 LLFLFLE 144
>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces
cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A
Length = 149
Score = 91.2 bits (227), Expect = 9e-24
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 8 ATARLKQDYMKLKKDPIPYVIAEP-NPANILEWFYVVIGPENTQYEGGMYLGKLVFPRDF 66
R+ ++ +K DP ++ E + ++I +GP T YEGG ++ + P ++
Sbjct: 2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEY 61
Query: 67 PFKPPSIYMIT----PNGRFKTNTRLCLSMSDFHPDTWNPAWSVSTILTGLLSFMVE 119
PFKPP + T PN +CL D + W+P ++ + L L + +
Sbjct: 62 PFKPPKMQFDTKVYHPN-ISSVTGAICL---DILKNAWSPVITLKSALISLQALLQS 114
>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein
interaction, protein ligase complex; HET: DNA; 1.90A
{Schizosaccharomyces pombe}
Length = 163
Score = 91.2 bits (227), Expect = 1e-23
Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 15/128 (11%)
Query: 1 MSSKHCGATARLKQDYMKLKKDPIPYVIAEP-----NPANILEWFYVVIGPENTQYEGGM 55
SS RL+++ + ++D A+P +++ W + G T +EGG+
Sbjct: 7 HSSL---CKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGL 63
Query: 56 YLGKLVFPRDFPFKPPSIYMIT----PNGRFKTNTRLCLSMSDFHPDTWNPAWSVSTILT 111
Y + FP ++P +PP PN + +CLS+ + + W PA ++ IL
Sbjct: 64 YKLTMAFPEEYPTRPPKCRFTPPLFHPN--VYPSGTVCLSILN-EEEGWKPAITIKQILL 120
Query: 112 GLLSFMVE 119
G+ + +
Sbjct: 121 GIQDLLDD 128
>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1;
inhibition, hydrolase-ligase complex; 3.30A {Homo
sapiens} PDB: 4ddi_A
Length = 399
Score = 95.8 bits (238), Expect = 2e-23
Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 9/119 (7%)
Query: 8 ATARLKQDYMKLKKDPIPYVIAEPNPANILEWFYVVIGPENTQYEGGMYLGKLVFPRDFP 67
A R+ ++ L +DP A P ++ W ++GP ++ Y+GG++ + FP D+P
Sbjct: 4 ALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP 63
Query: 68 FKPPSIYMIT----PNGRFKTNTRLCLSMSDFHPDTWNPAWSVSTILTGLLSFMVERSP 122
FKPP + T PN +N + L D W+PA ++S +L + S + + +P
Sbjct: 64 FKPPKVAFTTRIYHPN--INSNGSISL---DILRSQWSPALTISKVLLSICSLLCDPNP 117
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent
degradation, ligase; NMR {Saccharomyces cerevisiae}
SCOP: a.5.2.1 d.20.1.1
Length = 215
Score = 91.8 bits (228), Expect = 3e-23
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 9/117 (7%)
Query: 8 ATARLKQDYMKLKKDPIPYVIAEP-NPANILEWFYVVIGPENTQYEGGMYLGKLVFPRDF 66
R+ ++ +K DP ++ E + ++I +GP T YEGG ++ + P ++
Sbjct: 3 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEY 62
Query: 67 PFKPPSIYMIT----PNGRFKTNTRLCLSMSDFHPDTWNPAWSVSTILTGLLSFMVE 119
PFKPP + T PN +CL D + W+P ++ + L L + +
Sbjct: 63 PFKPPKMQFDTKVYHPN-ISSVTGAICL---DILRNAWSPVITLKSALISLQALLQS 115
>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein
complex, ubiquitin conjugating ENZY complex, peroxisomal
protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A
2y9o_A
Length = 172
Score = 89.8 bits (223), Expect = 6e-23
Identities = 28/136 (20%), Positives = 55/136 (40%), Gaps = 23/136 (16%)
Query: 1 MSSKHCGATARLKQDYMKLKK---------DPIPYVIAEPNPA---NILEWFYVVIGPEN 48
M+ +R+ ++Y + K +P +I NP ++ +W ++ GP +
Sbjct: 3 MAD---TCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSD 59
Query: 49 TQYEGGMYLGKLVFPRDFPFKPPSIYMIT-----PNGRFKTNTRLCLSMSDFHPDTWNPA 103
T YE + + P +P PP I + N + T +CL++ P+ W P
Sbjct: 60 TPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATG-EICLNI--LKPEEWTPV 116
Query: 104 WSVSTILTGLLSFMVE 119
W + + + + E
Sbjct: 117 WDLLHCVHAVWRLLRE 132
>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular
complex, ubiquitin, ATP, conformational change,
thioester, switch, adenylation, protein turnover,
ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1
Length = 180
Score = 89.7 bits (223), Expect = 8e-23
Identities = 26/122 (21%), Positives = 52/122 (42%), Gaps = 11/122 (9%)
Query: 2 SSKHCGATARLKQDYMKLKKDPIPYVIAEPNPANILEWFYVVIGPENTQYEGGMYLGKLV 61
S K A R+++D +L + +P ++L + +VI P+ Y+ G ++
Sbjct: 21 SKKASAAQLRIQKDINELNLPKTCDISF-SDPDDLLNF-KLVICPDEGFYKSGKFVFSFK 78
Query: 62 FPRDFPFKPPSIYMIT----PNGRFKTNTRLCLSMSDFHPDTWNPAWSVSTILTGLLSFM 117
+ +P PP + T PN + L + + W P ++++I+ GL
Sbjct: 79 VGQGYPHDPPKVKCETMVYHPN--IDLEGNVAL---NILREDWKPVLTINSIIYGLQYLF 133
Query: 118 VE 119
+E
Sbjct: 134 LE 135
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure,
ATP-binding, isopeptide BO ligase, nucleotide-binding,
UBL conjugation pathway; 1.80A {Homo sapiens} PDB:
3k9p_A 1yla_A 2o25_A
Length = 201
Score = 89.8 bits (223), Expect = 1e-22
Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 14/129 (10%)
Query: 1 MSSKHCGATARLK---QDYMKLKKDPIPYVIAEPNPANILEWFYVVIGPENTQYEGGMYL 57
M++ A R+K ++ +K ++ + + N E + GP +T YEGG Y
Sbjct: 2 MANI---AVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQ 58
Query: 58 GKLVFPRDFPFKPPSIYMIT----PNGRFKTNTRLCLSMSDFHPDTWNPAWSVSTILTGL 113
++ P +PF PP + IT PN +CL D D W A ++ T+L L
Sbjct: 59 LEIKIPETYPFNPPKVRFITKIWHPNIS-SVTGAICL---DILKDQWAAAMTLRTVLLSL 114
Query: 114 LSFMVERSP 122
+ + P
Sbjct: 115 QALLAAAEP 123
>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating
enzyme, protein degradatio structural proteomics in
europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB:
2bf8_A
Length = 159
Score = 88.5 bits (220), Expect = 2e-22
Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 14/126 (11%)
Query: 1 MSSKHCGATARLKQDYMKLKKD---PIPYVIAEPNPANILEWFYVVIGPENTQYEGGMYL 57
M++ A R+K+++ ++ K + + N E + GP +T YEGG Y
Sbjct: 5 MANI---AVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQ 61
Query: 58 GKLVFPRDFPFKPPSIYMIT----PNGRFKTNTRLCLSMSDFHPDTWNPAWSVSTILTGL 113
++ P +PF PP + IT PN +CL D D W A ++ T+L L
Sbjct: 62 LEIKIPETYPFNPPKVRFITKIWHPN-ISSVTGAICL---DILKDQWAAAMTLRTVLLSL 117
Query: 114 LSFMVE 119
+ +
Sbjct: 118 QALLAA 123
>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2
M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1
Length = 160
Score = 88.1 bits (219), Expect = 2e-22
Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 14/123 (11%)
Query: 1 MSSKHCGATARLKQDYMKLKKDPIPYVIAEPNPANILEWFYVVIGPENTQYEGGMYLGKL 60
M+S A R+++D +L + +P ++L + +VI P+ Y+ G ++
Sbjct: 3 MAS---AAQLRIQKDINELNLPKTCDISF-SDPDDLLNF-KLVICPDEGFYKSGKFVFSF 57
Query: 61 VFPRDFPFKPPSIYMIT----PNGRFKTNTRLCLSMSDFHPDTWNPAWSVSTILTGLLSF 116
+ +P PP + T PN +CL + + W P ++++I+ GL
Sbjct: 58 KVGQGYPHDPPKVKCETMVYHPN--IDLEGNVCL---NILREDWKPVLTINSIIYGLQYL 112
Query: 117 MVE 119
+E
Sbjct: 113 FLE 115
>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A
{Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B
Length = 138
Score = 87.3 bits (217), Expect = 3e-22
Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 11/126 (8%)
Query: 1 MSSKHCGATARLKQDYMKLKKDPIPYVIA----EPNPANILEWFYVVIGPENTQYEGGMY 56
MS RL ++ K +K P + + + + +W ++GP ++ +E +Y
Sbjct: 2 MSKVP--RNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIY 59
Query: 57 LGKLVFPRDFPFKPPSIYMITP---NGRFKTNTRLCLSMSDFHPDTWNPAWSVSTILTGL 113
+ ++P PP + I+ T + W A+++ T+L L
Sbjct: 60 SLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFH--TLRDWKRAYTMETLLLDL 117
Query: 114 LSFMVE 119
M
Sbjct: 118 RKEMAT 123
>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL
structural genomics consortium, SGC, ligase; HET: PG4;
2.38A {Plasmodium falciparum}
Length = 152
Score = 87.3 bits (217), Expect = 4e-22
Identities = 27/104 (25%), Positives = 44/104 (42%), Gaps = 8/104 (7%)
Query: 11 RLKQDYMKLKKDPIPYVIAEPNPANILEWFYVVIGPENTQYEGGMYLGKLVFPRDFPFKP 70
L + K + E N + ++ + GP T YEGG++ + P D+PF
Sbjct: 3 SLTRKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFAS 62
Query: 71 PSIYMIT----PNGRFKTNTRLCLSMSDFHPDTWNPAWSVSTIL 110
PSI + PN + + +CL D TW P +S+ +
Sbjct: 63 PSIGFMNKLLHPN-VDEASGSVCL---DVINQTWTPLYSLVNVF 102
>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721,
structural genomics, structural genomics consortium,
SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1
Length = 193
Score = 87.5 bits (217), Expect = 8e-22
Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 8/120 (6%)
Query: 4 KHCGATARLKQDYMKLKKDPIPYVIAEPNPANILEWFYVVIGPENTQYEGGMYLGKLVFP 63
R V A+ +I W + GP T YEGG + +V P
Sbjct: 42 ADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIP 101
Query: 64 RDFPFKPPSIYMIT----PNGRFKTNTRLCLSMSDFHPDTWNPAWSVSTILTGLLSFMVE 119
D+P+ PP + +T PN +T +CL D W+PA ++ T L + + + +
Sbjct: 102 PDYPYNPPKMKFVTKIWHPNISSQTG-AICL---DILKHEWSPALTIRTALLSIQAMLAD 157
>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing,
nuclear protein, UBL conjugation pathway,ubiquitin,
ligase, structural genomics; 1.69A {Homo sapiens} SCOP:
d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A
Length = 160
Score = 85.9 bits (213), Expect = 1e-21
Identities = 22/122 (18%), Positives = 43/122 (35%), Gaps = 14/122 (11%)
Query: 8 ATARLKQDYMKLKKDPIPYVIAEP----NPANILEWFYVVIGPENTQYEGGMYLGKLVFP 63
RL ++ + +K ++ + W ++IGP T YE +Y K+
Sbjct: 26 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECG 85
Query: 64 RDFPFKPPSIYMIT----PNGRFKTN--TRLCLSMSDFHPDTWNPAWSVSTILTGLLSFM 117
+P PP + +T +S+ W ++S+ +L L M
Sbjct: 86 PKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISV----LAKWQNSYSIKVVLQELRRLM 141
Query: 118 VE 119
+
Sbjct: 142 MS 143
>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating
enzyme variant, UBC13, HUBC13, polyubiquitination,
ligase, signaling protein; NMR {Homo sapiens}
Length = 170
Score = 86.3 bits (214), Expect = 1e-21
Identities = 22/122 (18%), Positives = 43/122 (35%), Gaps = 14/122 (11%)
Query: 8 ATARLKQDYMKLKKDPIPYVIAEP----NPANILEWFYVVIGPENTQYEGGMYLGKLVFP 63
RL ++ + +K ++ + W ++IGP T YE +Y K+
Sbjct: 36 RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECG 95
Query: 64 RDFPFKPPSIYMIT----PNGRFKTN--TRLCLSMSDFHPDTWNPAWSVSTILTGLLSFM 117
+P PP + +T +S+ W ++S+ +L L M
Sbjct: 96 PKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVL----AKWQNSYSIKVVLQELRRLM 151
Query: 118 VE 119
+
Sbjct: 152 MS 153
>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural
genomics, structural genomics consortium; 2.10A {Homo
sapiens}
Length = 179
Score = 84.4 bits (209), Expect = 8e-21
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 13/119 (10%)
Query: 1 MSSKHCGATARLKQDYMKLKKDPIPYVIAEPNPANILEWFYVVIGPENTQYEGGMYLGKL 60
MSS R+ D +KL + I + E+ GP+ T YEGG++ ++
Sbjct: 20 MSSPS-PGKRRMDTDVIKLIESKHEVTILG----GLNEFVVKFYGPQGTPYEGGVWKVRV 74
Query: 61 VFPRDFPFKPPSIYMIT----PNGRFKTNTRLCLSMSDFHPDTWNPAWSVSTILTGLLS 115
P +PFK PSI + PN + +CL D TW + ++ I L
Sbjct: 75 DLPDKYPFKSPSIGFMNKIFHPNIDEASG-TVCL---DVINQTWTALYDLTNIFESFLP 129
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting,
ligase, alternative splicing, cytoplasm, UBL
conjugation, UBL conjugation pathway; 1.86A {Homo
sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Length = 253
Score = 86.1 bits (213), Expect = 9e-21
Identities = 31/123 (25%), Positives = 52/123 (42%), Gaps = 8/123 (6%)
Query: 1 MSSKHCGATARLKQDYMKLKKDPIPYVIAEPNPANILEWFYVVIGPENTQYEGGMYLGKL 60
M++ R ++ +K ++ + + N E + GP +T YEGG Y ++
Sbjct: 54 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEI 113
Query: 61 VFPRDFPFKPPSIYMIT----PNGRFKTNTRLCLSMSDFHPDTWNPAWSVSTILTGLLSF 116
P +PF PP + IT PN +CL D D W A ++ T+L L +
Sbjct: 114 KIPETYPFNPPKVRFITKIWHPN-ISSVTGAICL---DILKDQWAAAMTLRTVLLSLQAL 169
Query: 117 MVE 119
+
Sbjct: 170 LAA 172
>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G
structural genomics consortium, SGC, ligase; 2.40A
{Plasmodium falciparum} PDB: 3e95_C
Length = 156
Score = 82.0 bits (203), Expect = 5e-20
Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 19/122 (15%)
Query: 8 ATARLKQDYMKLKKDPIPYVIA----EPNPANILEWFYVVIGPENTQYEGGMYLGKLVFP 63
+ RL + + +K + ++ + + W + G T +E +Y +
Sbjct: 22 RSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCD 81
Query: 64 RDFPFKPPS------IYM--ITPNGRFKTNTRLCLSMSDFHPDTWNPAWSVSTILTGLLS 115
++P PP+ I M + G R+ + + WN +++ TIL L
Sbjct: 82 DNYPDSPPTVKFDTKIEMSCVDNCG------RVIKNNLHILKN-WNRNYTIETILISLRQ 134
Query: 116 FM 117
M
Sbjct: 135 EM 136
>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI,
protein structure initiative ubiquitin conjugating
enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1
Length = 171
Score = 80.1 bits (198), Expect = 3e-19
Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 12/107 (11%)
Query: 8 ATARLKQDYMKLKKDPIPYVIAEPNPANILEWFYVVIGPENTQYEGGMYLGKLVFPRDFP 67
+ R + DYM+L ++ + E++ GPE T YE G ++ + P D+P
Sbjct: 13 SNRRREMDYMRLCNSTRKVYPSD----TVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYP 68
Query: 68 FKPPSIYMIT----PNGRFKTNTRLCLSMSDFHPDTWNPAWSVSTIL 110
FK PSI PN ++ +CL D TW P + + I
Sbjct: 69 FKSPSIGFCNRILHPNVDERSG-SVCL---DVINQTWTPMYQLENIF 111
>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics,
PSI, protein structure initiative; 2.63A {Trypanosoma
cruzi}
Length = 167
Score = 79.8 bits (197), Expect = 4e-19
Identities = 27/133 (20%), Positives = 48/133 (36%), Gaps = 26/133 (19%)
Query: 1 MSSKHCGATARLKQDYMKLKKD------------PIPYVIAEPNPANILEWFYVVIGPEN 48
M + + R+ +D L ++ P I + I W V P +
Sbjct: 5 MKN---ISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPAD 61
Query: 49 TQY--EGGMYLGKLVFPRDFPFKPPSIYMIT----PNGRFKTNTRLCLSMSDFHPDTWNP 102
+ Y G Y ++F D+P +PP++ +T P +C M + D W P
Sbjct: 62 SVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPL--VTGEGGICDRMVN---DFWTP 116
Query: 103 AWSVSTILTGLLS 115
S ++ +L
Sbjct: 117 DQHASDVIKLVLD 129
>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating
enzyme, structural genomics consortium ,SGC; 1.80A {Homo
sapiens} SCOP: d.20.1.1 PDB: 2qgx_A
Length = 186
Score = 80.0 bits (197), Expect = 6e-19
Identities = 21/139 (15%), Positives = 49/139 (35%), Gaps = 20/139 (14%)
Query: 2 SSKHCGATARLKQDYMKLKKDPIPY---VIAEPNPANILEWFYVVIG-PENTQYEGGM-- 55
S A+ RL ++ + + E ++ +W + ++ +
Sbjct: 22 VSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQI 81
Query: 56 ---------YLGKLVFPRDFPFKPPSIYMITP---NGRFKTNTRLCLSMSDFHPDTWNPA 103
L F +FPF PP + ++ P G LC+ + W+ A
Sbjct: 82 LKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMEL--LTKQGWSSA 139
Query: 104 WSVSTILTGLLSFMVERSP 122
+S+ +++ + + +V+
Sbjct: 140 YSIESVIMQINATLVKGKA 158
>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase,
protease inhibitor, thiol protease inhibitor, UBL
conjugation pathway; HET: MSE; 2.01A {Homo sapiens}
Length = 323
Score = 74.3 bits (182), Expect = 4e-16
Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 17/130 (13%)
Query: 1 MSSKHCGATARLKQDYMKLKKDP----IPYVIAEPNPANILEWFYVVIGPENTQYEGGMY 56
+ RL Q+ + L V + + ++ GP +T Y G +
Sbjct: 70 NDANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCF 129
Query: 57 LGKLVFPRDFPFKPPSIYMITPNG---RFKTNT----RLCLSM----SDFHPDTWNPAWS 105
+ FP+D+P PP + + T G RF N ++CLS+ + WNP
Sbjct: 130 EFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQ-- 187
Query: 106 VSTILTGLLS 115
S+ L L+S
Sbjct: 188 TSSFLQVLVS 197
>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural
genomics, structural genomics consortium,
oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP:
c.2.1.2
Length = 279
Score = 66.5 bits (163), Expect = 2e-13
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFDK--SLYEAHPCLQAEDIANTVEFILSSPPHVQVSR 214
ISPG+V++Q +K + YE CL+ ED+A V ++LS+P H+Q+
Sbjct: 214 ATCISPGVVETQFAFKLHDKDPEKAAATYEQMKCLKPEDVAEAVIYVLSTPAHIQIGD 271
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase,
lactamase inhibitor, AN biosynthesis, NADPH,
oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces
clavuligerus} PDB: 2jap_A*
Length = 247
Score = 59.5 bits (145), Expect = 4e-11
Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFDK----SLYEAHPCLQAEDIANTVEFILSSPPHVQVSR 214
V I PG ++ + + K LQA+DIA V + +++P H V
Sbjct: 180 VVVIEPGTTDTE-LRGHITHTATKEMYEQRISQIRKLQAQDIAEAVRYAVTAPHHATVHE 238
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 58.7 bits (143), Expect = 8e-11
Identities = 14/80 (17%), Positives = 33/80 (41%), Gaps = 17/80 (21%)
Query: 134 RRQLAARSLRFNLNDKNFCELFPDLVQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCLQA 193
R++ A +R V ++SPG + + + L D + ++
Sbjct: 161 RKEEANNGIR---------------VSTVSPGPTNTPMLQG-LMDSQGTNFRPEIY-IEP 203
Query: 194 EDIANTVEFILSSPPHVQVS 213
++IAN + F++ + Q++
Sbjct: 204 KEIANAIRFVIDAGETTQIT 223
>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold,
short-chain dehydrogenase/reducta ALLO-threonine
dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*
Length = 248
Score = 58.3 bits (142), Expect = 1e-10
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFDK----SLYEAHPCLQAEDIANTVEFILSSPPHVQVSR 214
V I PGLV F S++ K D Y+ L ED++ V ++ + P HV ++
Sbjct: 172 VTDIEPGLVGGTEF-SNVRFKGDDGKAEKTYQNTVALTPEDVSEAVWWVSTLPAHVNINT 230
>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain
oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A
{Saccharomyces cerevisiae}
Length = 287
Score = 57.3 bits (139), Expect = 3e-10
Identities = 13/62 (20%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 159 VQSISPGLVKSQ----IFKSSLGD--KFDKSLYEAHPCLQAEDIANTVEFILSSPPHVQV 212
V I+PGLV+++ ++ G+ + +Y+ L A+D+A+ + + S + +
Sbjct: 213 VILIAPGLVETEFSLVRYR---GNEEQAKN-VYKDTTPLMADDVADLIVYATSRKQNTVI 268
Query: 213 SR 214
+
Sbjct: 269 AD 270
>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A
{Pseudomonas aeruginosa}
Length = 272
Score = 56.1 bits (136), Expect = 7e-10
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 10/62 (16%)
Query: 159 VQSISPGLVKS----QIFKSSLGD--KFDKSLYEAHPCLQAEDIANTVEFILSSPPHVQV 212
V ++ PGL +S F GD ++DK Y +Q EDIA T+ +I++ P H+ +
Sbjct: 196 VTNLEPGLCESEFSLVRFG---GDQARYDK-TYAGAHPIQPEDIAETIFWIMNQPAHLNI 251
Query: 213 SR 214
+
Sbjct: 252 NS 253
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.08A {Sinorhizobium meliloti}
Length = 264
Score = 55.6 bits (135), Expect = 1e-09
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 9/61 (14%)
Query: 159 VQSISPGLVKS----QIFKSSLGDKFD-KSLYEAHPCLQAEDIANTVEFILSSPPHVQVS 213
V ++PG+V+S I + Y A LQ DIA V ++ +P V +
Sbjct: 176 VTCVNPGVVESELAGTITH---EETMAAMDTYRAIA-LQPADIARAVRQVIEAPQSVDTT 231
Query: 214 R 214
Sbjct: 232 E 232
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold,
oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Length = 266
Score = 55.7 bits (135), Expect = 1e-09
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFDKSLYEA-----HPCLQAEDIANTVEFILSSPPHVQVS 213
V +I+P VK++ S + K Y+A L A+D+A V F P +V +
Sbjct: 184 VMTIAPSAVKTE-LLSHTTSQQIKDGYDAWRVDMGGVLAADDVARAVLFAYQQPQNVCIR 242
Query: 214 R 214
Sbjct: 243 E 243
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta;
rossman fold, structural genomics, NPPSFA; 2.40A
{Thermus thermophilus}
Length = 234
Score = 54.5 bits (132), Expect = 2e-09
Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 9/56 (16%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCLQAEDIANTVEFILSSPPHVQVSR 214
V ++ PG V + F + L+ ED+A V F L P H VS
Sbjct: 175 VVNVLPGSVDTG---------FAGNTPGQAWKLKPEDVAQAVLFALEMPGHAMVSE 221
>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4;
1.60A {Thermococcus sibiricus}
Length = 235
Score = 53.7 bits (130), Expect = 4e-09
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCLQAEDIANTVEFILSSPPHVQVS 213
+ PG V + S K K + L+ ++IA V +L P V+V
Sbjct: 174 FFELRPGAVDTYFGGS----KPGKPKEKG--YLKPDEIAEAVRCLLKLPKDVRVE 222
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 50.6 bits (122), Expect = 5e-08
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 6/55 (10%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCLQAEDIANTVEFILSSPPHVQVS 213
V ++ PG V + + K + +Q +D+ NT+ +L+ +V +
Sbjct: 183 VTTLCPGWVNTD-----MAKKAGTPFKDEEM-IQPDDLLNTIRCLLNLSENVCIK 231
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structur initiative;
1.90A {Vibrio parahaemolyticus}
Length = 230
Score = 49.9 bits (120), Expect = 9e-08
Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCLQAEDIANTVEFILSSPPHVQVS 213
+ ++ PG + ++ +++S + + AED A + L++ + VS
Sbjct: 168 IIAVYPGGMATEFWETS------GKSLDTSSFMSAEDAALMIHGALANIGNGYVS 216
>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A
{Chlorobium tepidum} SCOP: c.2.1.2
Length = 244
Score = 48.0 bits (115), Expect = 5e-07
Identities = 13/80 (16%), Positives = 21/80 (26%), Gaps = 22/80 (27%)
Query: 134 RRQLAARSLRFNLNDKNFCELFPDLVQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCLQA 193
R ++R + PG V + + D+ + +
Sbjct: 173 RLYARKCNVRIT---------------DVQPGAVYTP-MWGKVDDEMQALM------MMP 210
Query: 194 EDIANTVEFILSSPPHVQVS 213
EDIA V P V
Sbjct: 211 EDIAAPVVQAYLQPSRTVVE 230
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural
genomics, PSI-2, protein structure initiative; 2.30A
{Aeromonas hydrophila subsp}
Length = 235
Score = 40.6 bits (96), Expect = 1e-04
Identities = 7/55 (12%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCLQAEDIANTVEFILSSPPHVQVS 213
+ ++ P ++S+ + ++ + + ED A + L + V+
Sbjct: 173 LVNLYPSGIRSEFWDNT-------DHVDPSGFMTPEDAAAYMLDALEARSSCHVT 220
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 36.8 bits (86), Expect = 0.003
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 21/77 (27%)
Query: 135 RQLAARSLRFNLNDKNFCELFPDLVQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCL--- 191
++L R + N +++PG + +F D+ + P L
Sbjct: 191 KELRGRDITVN---------------AVAPGPTATDLFLEGKSDEVRDRFAKLAP-LERL 234
Query: 192 -QAEDIANTVEFILSSP 207
+DIA V F L+ P
Sbjct: 235 GTPQDIAGAVAF-LAGP 250
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 36.3 bits (85), Expect = 0.004
Identities = 9/51 (17%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCL----QAEDIANTVEFILS 205
+ +I+PG + ++ +++ + + + P L +D+ F+LS
Sbjct: 183 INAIAPGPIDTEANRTTTPKEMVDDIVKGLP-LSRMGTPDDLVGMCLFLLS 232
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 35.5 bits (83), Expect = 0.007
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCL----QAEDIANTVEFILSSP 207
V I+PG + + KS + + ++ + + P + Q +DIAN F L SP
Sbjct: 184 VNGIAPGAILTDALKSVITPEIEQKMLQHTP-IRRLGQPQDIANAALF-LCSP 234
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 34.8 bits (81), Expect = 0.013
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCL----QAEDIANTVEFILSSP 207
V +I+PG +K+ + L + ++++ + P L +A+DIAN F L SP
Sbjct: 185 VNAIAPGAIKTDALATVLTPEIERAMLKHTP-LGRLGEAQDIANAALF-LCSP 235
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease, oxidoreductase; 2.50A {Mycobacterium marinum}
Length = 271
Score = 34.8 bits (81), Expect = 0.014
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCL----QAEDIANTVEFILS 205
+I+PGLV++ + L H + +IA V F+ S
Sbjct: 184 CNAIAPGLVRTPRLEVGLPQPIVDIFATHHL-AGRIGEPHEIAELVCFLAS 233
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 34.1 bits (79), Expect = 0.018
Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 21/86 (24%)
Query: 125 GSIEMSDYERRQLAARSLRFNLNDKNFCELFPDLVQSISPGLVKSQIFKSSLGDKFDKSL 184
G + +L +R + ++PG V+++ F L K
Sbjct: 185 GLNGLMTSAAEELRQHQVRVS---------------LVAPGSVRTE-FGVGLSAK----- 223
Query: 185 YEAHPCLQAEDIANTVEFILSSPPHV 210
A ++ +DIA+ V + +
Sbjct: 224 KSALGAIEPDDIADVVALLATQADQS 249
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 34.0 bits (79), Expect = 0.020
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCL----QAEDIANTVEFILS 205
V ++ PG +K+ + G + S P + + DIA ++ S
Sbjct: 182 VNTVHPGYIKTPLVDDLPGAEEAMSQRTKTP-MGHIGEPNDIAYICVYLAS 231
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.023
Identities = 43/244 (17%), Positives = 78/244 (31%), Gaps = 94/244 (38%)
Query: 8 ATARLKQDYMKLKKDPIPYVIAEPNPANILEWFYVVIGPENTQYEGGMYLGKLVFPRDFP 67
+ L + L + + NILEW + P NT + YL L P P
Sbjct: 191 SAETLSE----LIRTTLDAEKVFTQGLNILEW---LENPSNTPDKD--YL--LSIPISCP 239
Query: 68 FKPPSI-------YMITPN------GRFKTNTR------------LCLSMSDFHPDTWNP 102
I Y++T G ++ + + ++ +D +W
Sbjct: 240 L----IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETD----SW-E 290
Query: 103 AW--SVSTILTGLLSFMVERSPTLGSIEMSDYERRQLAARSLRFNLNDKNFCELFPDLVQ 160
++ SV +T +L F +G R A + L P +++
Sbjct: 291 SFFVSVRKAIT-VLFF-------IGV-------RCYEAYPN----------TSLPPSILE 325
Query: 161 SI--------SP-----GLVKSQIFKSSLGDKFDKSLYEAHPCLQAEDIA--NTVE-FIL 204
SP L + Q+ +K + L P + +I+ N + ++
Sbjct: 326 DSLENNEGVPSPMLSISNLTQEQVQD--YVNKTNSHL----PAGKQVEISLVNGAKNLVV 379
Query: 205 SSPP 208
S PP
Sbjct: 380 SGPP 383
Score = 28.9 bits (64), Expect = 1.6
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 20/76 (26%)
Query: 137 LAARSLR-FNLNDKNFCELFPDLVQSISPGLVKSQIF--KSSLGDKFDKSLYEAHPCLQA 193
+ A S R L+ L + LV + F S L ++F+K L E A
Sbjct: 1 MDAYSTRPLTLSH-------GSLEHVL---LVPTASFFIASQLQEQFNKILPEPTEGFAA 50
Query: 194 EDIANTVEFILSSPPH 209
+D E ++P
Sbjct: 51 DD-----EP--TTPAE 59
Score = 27.7 bits (61), Expect = 3.8
Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 11/51 (21%)
Query: 11 RLKQDYMKLKKDPIP--YVIAEPNPANILEWFYVVI--GP-------ENTQ 50
R++++Y + + I + E I E + TQ
Sbjct: 1683 RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ 1733
>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B),
NAD(P)-binding rossmann-fold structural genomics,
NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}
Length = 207
Score = 33.7 bits (78), Expect = 0.025
Identities = 10/78 (12%), Positives = 19/78 (24%), Gaps = 18/78 (23%)
Query: 139 ARSLRFNLNDKNFCELFPD--LVQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCLQAEDI 196
+ R EL + + + V + ++ L E+
Sbjct: 145 LEAARK--------ELLREGVHLVLVRLPAVATGLW--------APLGGPPKGALSPEEA 188
Query: 197 ANTVEFILSSPPHVQVSR 214
A V L P +
Sbjct: 189 ARKVLEGLFREPVPALLE 206
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 33.8 bits (78), Expect = 0.029
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCL----QAEDIANTVEFILSSP 207
V +I+PG +K+ I S+G++ P ++ A+ F+L++
Sbjct: 212 VNTIAPGTMKTPIM-ESVGEEALAKFAANIPFPKRLGTPDEFADAAAFLLTNG 263
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics,
protein structure initiati nysgrc,oxidoreductase; 2.00A
{Rhizobium etli}
Length = 272
Score = 32.9 bits (76), Expect = 0.046
Identities = 13/75 (17%), Positives = 33/75 (44%), Gaps = 20/75 (26%)
Query: 135 RQLAARSLRFNLNDKNFCELFPDLVQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCL--- 191
R++AA +R N ++ PG++++ + S + + + P +
Sbjct: 197 REVAAEGIRVN---------------AVRPGIIETDLHASGGLPDRAREMAPSVP-MQRA 240
Query: 192 -QAEDIANTVEFILS 205
E++A+ + ++LS
Sbjct: 241 GMPEEVADAILYLLS 255
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics; 1.95A
{Mycobacterium smegmatis}
Length = 266
Score = 32.9 bits (76), Expect = 0.050
Identities = 8/53 (15%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCL----QAEDIANTVEFILSSP 207
+ ++SP + + + + + + L + ++A T+ F L+S
Sbjct: 199 INAVSPSIARHKFLEKTSSSELLDRLASDEA-FGRAAEPWEVAATIAF-LASD 249
>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET:
CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB:
2hsd_A*
Length = 254
Score = 32.5 bits (75), Expect = 0.067
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFDKSLYEAHP----CLQAEDIANTVEFILS 205
V S+ PG+ + + G + + Y P + +IA V +LS
Sbjct: 176 VNSVHPGMTYTPMTAE-TGIRQGEGNYPNTPMGRVGNEPGEIAGAVVKLLS 225
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 32.6 bits (75), Expect = 0.073
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 3/56 (5%)
Query: 159 VQSISPGLVKSQIFKSSLGD--KFDKSLYEAHPCLQAEDIANTVEFILSSPPHVQV 212
I G + + + + D S+ P + +A+ V ++ S P V
Sbjct: 202 CGQIDIGNADTPMAQKMKAGVPQADLSIK-VEPVMDVAHVASAVVYMASLPLDANV 256
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus}
SCOP: c.2.1.2
Length = 242
Score = 32.2 bits (74), Expect = 0.074
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCL----QAEDIANTVEFILSSP 207
V +++PGL + + L +K SL P + E+ A V IL +P
Sbjct: 173 VVTVAPGLFDTPLL-QGLPEKAKASLAAQVPFPPRLGRPEEYAALVLHILENP 224
>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol,
oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila
lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A*
1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*
Length = 254
Score = 32.2 bits (74), Expect = 0.084
Identities = 11/78 (14%), Positives = 23/78 (29%), Gaps = 12/78 (15%)
Query: 140 RSLRFNLNDKNFCELFPDLVQSISPGLVKSQIFKSSLGDKFD-----KSLYEAHPCLQAE 194
SL SI+PG+ ++ + + D L +HP +E
Sbjct: 163 NSLAKLAPITGVT------AYSINPGITRTPLVHT-FNSWLDVEPRVAELLLSHPTQTSE 215
Query: 195 DIANTVEFILSSPPHVQV 212
+ + + +
Sbjct: 216 QCGQNFVKAIEANKNGAI 233
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 31.4 bits (72), Expect = 0.15
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCL----QAEDIANTVEFILSSP 207
V +I+PG+ + + + + +L + P +AE+ A V+ I +
Sbjct: 188 VVTIAPGIFDTPMM-AGMPQDVQDALAASVPFPPRLGRAEEYAALVKHICENT 239
>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET:
NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A*
1sep_A* 1z6z_A*
Length = 259
Score = 31.2 bits (71), Expect = 0.17
Identities = 8/56 (14%), Positives = 18/56 (32%), Gaps = 7/56 (12%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFD-------KSLYEAHPCLQAEDIANTVEFILSSP 207
V S +PG + + + + + D + L + A + +L
Sbjct: 192 VLSYAPGPLDNDMQQLARETSKDPELRSKLQKLKSDGALVDCGTSAQKLLGLLQKD 247
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 30.9 bits (71), Expect = 0.24
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCL-------QAEDIANTVEFILS 205
V SI P + + + ++SL K + P L E IA V F+ S
Sbjct: 178 VNSIHPDGIYTPMMQASLPKGVSKEMVLHDPKLNRAGRAYMPERIAQLVLFLAS 231
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 30.7 bits (70), Expect = 0.27
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCL----QAEDIANTVEFILSSP 207
V +I+PGL + + +SL ++ SL + P ++ I+ +P
Sbjct: 188 VMTIAPGLFDTPLL-ASLPEEARASLGKQVPHPSRLGNPDEYGALAVHIIENP 239
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D
3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 30.3 bits (68), Expect = 0.29
Identities = 9/51 (17%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
Query: 59 KLVFPRDFPFKPPSIYMITPNGRFKTNTRLCLSMSDFHPDTWNPAWSVSTI 109
L + P++Y + + ++ +CL +DF T S +
Sbjct: 107 ILTVHPNIQNPDPAVYQLRDSK--SSDKSVCL-FTDFDSQTNVSQSKDSDV 154
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 30.7 bits (70), Expect = 0.31
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCL----QAEDIANTVEFILSSP 207
V +I+PGL + + +SL +K L P + A+ V+ I+ +P
Sbjct: 195 VMTIAPGLFGTPLL-TSLPEKVCNFLASQVPFPSRLGDPAEYAHLVQAIIENP 246
>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium}
SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A
3aut_A* 3auu_A*
Length = 261
Score = 30.5 bits (70), Expect = 0.32
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Query: 159 VQSISPGLVKSQIFKSSLGD-KFDKSLYEAHPCL----QAEDIANTVEFILSSP 207
V +I PG + + I D + + P + + E+IA + L+S
Sbjct: 183 VNNIGPGAINTPINAEKFADPEQRADVESMIP-MGYIGEPEEIAAVAAW-LASS 234
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of
seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 30.2 bits (69), Expect = 0.37
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 14/60 (23%)
Query: 159 VQSISPGLVKSQIFKSSLGD--------KFDKSLYEAHPCL----QAEDIANTVEFILSS 206
V SISPGLV + + ++ E P Q +DIA + F L+
Sbjct: 187 VNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVP-AGVMGQPQDIAEVIAF-LAD 244
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 30.2 bits (69), Expect = 0.38
Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 14/61 (22%)
Query: 159 VQSISPGLVKSQIFKSSLGD--------KFDKSLYEAHPCL----QAEDIANTVEFILSS 206
V S+SPG+V++ + F S E P + + E IAN + F L+
Sbjct: 187 VNSVSPGMVETGFTNAMGMPDQASQKFYNFMASHKECIP-IGAAGKPEHIANIILF-LAD 244
Query: 207 P 207
Sbjct: 245 R 245
>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP}
SCOP: c.2.1.2 PDB: 2ewm_A*
Length = 249
Score = 30.1 bits (69), Expect = 0.40
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 5/53 (9%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCL----QAEDIANTVEFILSSP 207
V +I+P LV++ ++S L + D+ F L+S
Sbjct: 179 VNAIAPSLVRTATTEASALSAMFDVLPNMLQAIPRLQVPLDLTGAAAF-LASD 230
>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A
{Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A*
2bgm_A*
Length = 278
Score = 30.2 bits (69), Expect = 0.43
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFDK----SLYEAHP---CLQAEDIANTVEFILSS 206
V +SP +V S + G + + A+ L+AED+A+ V + L+
Sbjct: 192 VNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLKGTLLRAEDVADAVAY-LAG 245
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics,
PSI-2, dehydrogenase, protein structure initiative;
2.30A {Oenococcus oeni psu-1}
Length = 262
Score = 29.8 bits (68), Expect = 0.52
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCL----QAEDIANTVEFILS 205
V +I+PG + + F + + EDIA ++F+ +
Sbjct: 186 VNAIAPGPMDTSFFYGQETKESTAFHKSQAM-GNQLTKIEDIAPIIKFLTT 235
>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural
genomics center for infectious disease, S brucellosis;
2.20A {Brucella melitensis biovar abortus}
Length = 261
Score = 29.8 bits (68), Expect = 0.53
Identities = 13/80 (16%), Positives = 31/80 (38%), Gaps = 24/80 (30%)
Query: 135 RQLAARSLRFNLNDKNFCELFPDLVQSISPGLVKSQIFKSSLG---DKFDKSLYEAHPCL 191
+LA +R +++P ++ + + +G ++ K ++ P +
Sbjct: 176 IELAPAKIRVV---------------ALNPVAGETPLLTTFMGEDSEEIRKKFRDSIP-M 219
Query: 192 ----QAEDIANTVEFILSSP 207
+ +D+A F L SP
Sbjct: 220 GRLLKPDDLAEAAAF-LCSP 238
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology,
NEW YORK structural genomi research consortium, nysgrc;
2.00A {Rhizobium etli}
Length = 277
Score = 29.8 bits (68), Expect = 0.53
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 11/58 (18%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFD-----KSLYEAHPCL----QAEDIANTVEFILSSP 207
V +++PG + S F + D + AE+IA + F L+S
Sbjct: 198 VNAVAPGTIDSPYFTKIFAEAKDPAKLRSDFNARAV-MDRMGTAEEIAEAMLF-LASD 253
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; 1.87A
{Rhodopseudomonas palustris}
Length = 252
Score = 29.6 bits (67), Expect = 0.61
Identities = 6/50 (12%), Positives = 11/50 (22%), Gaps = 1/50 (2%)
Query: 162 ISPGLVKSQIFKSSLGDKFDKSLYEAHP-CLQAEDIANTVEFILSSPPHV 210
I V + + F K + +A + P
Sbjct: 184 IIDSGVDTAWVRERREQMFGKDALANPDLLMPPAAVAGAYWQLYQQPKSA 233
>1xq1_A Putative tropinone reducatse; structural genomics, protein
structure initiative, CESG, AT1 reductively methylated
protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB:
2q45_A
Length = 266
Score = 29.8 bits (68), Expect = 0.62
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 152 CELFPDLVQ--SISPGLVKSQIFKSSLGDKFDKSLYEAHPCL----QAEDIANTVEFILS 205
CE D ++ +++P ++ + + ++ D+F K + P L + E++++ V F L
Sbjct: 180 CEWASDGIRANAVAPAVIATPLAEAVYDDEFKKVVISRKP-LGRFGEPEEVSSLVAF-LC 237
Query: 206 SP 207
P
Sbjct: 238 MP 239
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 29.4 bits (67), Expect = 0.63
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 10/52 (19%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCL----QAEDIANTVEFILSS 206
V I+PG + + +F + A P +DI+N V F+
Sbjct: 170 VNCIAPGWINV-----TEQQEFTQEDCAAIP-AGKVGTPKDISNMVLFLCQQ 215
>3imf_A Short chain dehydrogenase; structural genomics, infectious D center
for structural genomics of infectious diseases,
oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus
anthracis str}
Length = 257
Score = 29.4 bits (67), Expect = 0.64
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 159 VQSISPGLVKSQIFKSSL--GDKFDKSLYEAHPCL---QAEDIANTVEFILS 205
V +I+PG ++ L ++ K ++ P E+IA ++ S
Sbjct: 182 VNAIAPGPIERTGGADKLWISEEMAKRTIQSVPLGRLGTPEEIAGLAYYLCS 233
>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid
synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH
binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus
subtilis} PDB: 3oic_A*
Length = 258
Score = 29.4 bits (67), Expect = 0.65
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 159 VQSISPGLVKSQIFKS-SLGDKFDKSLYEAHPCL----QAEDIANTVEFILSSP 207
V ++S G + + K + + + P + +D+ +TVEF L S
Sbjct: 179 VNAVSGGAIDTDALKHFPNREDLLEDARQNTP-AGRMVEIKDMVDTVEF-LVSS 230
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 29.4 bits (67), Expect = 0.66
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 159 VQSISPGLVKSQIFKSSLGD-KFDKSLYEAHPCL----QAEDIANTVEFILS 205
V SI PGL+++ + + + P L + ED+AN F+LS
Sbjct: 189 VNSIRPGLIRTDLVAAITESAELSSDYAMCTP-LPRQGEVEDVANMAMFLLS 239
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium, three layer; 1.76A {Rhizobium etli}
Length = 273
Score = 29.4 bits (67), Expect = 0.73
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 27/83 (32%)
Query: 135 RQLAARSLRFNLNDKNFCELFPDLVQSISPGLVKSQIFKSSLG------DKFDKSLYEAH 188
L R +R N ++SPG ++ G +L
Sbjct: 189 LDLKDRGIRIN---------------TLSPGPTETTGLVELAGKDPVQQQGLLNALAAQV 233
Query: 189 PCL----QAEDIANTVEFILSSP 207
P + +AE++A F L+S
Sbjct: 234 P-MGRVGRAEEVAAAALF-LASD 254
>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase,
PSI-2, P structure initiative; 2.30A {Agrobacterium
tumefaciens str}
Length = 259
Score = 29.4 bits (67), Expect = 0.79
Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCL----QAEDIANTVEFILS 205
V ++ PG++ + + + + + A L +ED+A V F+ S
Sbjct: 182 VNAVCPGMISTTFHDTFTKPEVRERVAGATS-LKREGSSEDVAGLVAFLAS 231
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 29.4 bits (67), Expect = 0.81
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 7/53 (13%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCL----QAEDIANTVEFILSSP 207
V + PGL+++ + L + A P L + E++A F L S
Sbjct: 174 VNVLLPGLIQTPMTAG-LPPWAWEQEVGASP-LGRAGRPEEVAQAALF-LLSE 223
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 29.1 bits (66), Expect = 0.85
Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 14/61 (22%)
Query: 159 VQSISPGLVKSQIFKSSLGD--------KFDKSLYEAHPCL----QAEDIANTVEFILSS 206
V S+SPG V + + F S E P + + E+IAN + F L+
Sbjct: 205 VNSVSPGAVATGFMGAMGLPETASDKLYSFIGSRKECIP-VGHCGKPEEIANIIVF-LAD 262
Query: 207 P 207
Sbjct: 263 R 263
>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta,
oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB:
3o4r_A*
Length = 260
Score = 29.0 bits (66), Expect = 0.90
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 159 VQSISPGLVKSQIFKS-SLGDKFDKSLYEAHPCL----QAEDIANTVEFILSSP 207
V ++PGL+K+ + + + + E+ + ED A V F L S
Sbjct: 189 VNCLAPGLIKTNFSQVLWMDKARKEYMKESLR-IRRLGNPEDCAGIVSF-LCSE 240
>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein,
unknown function, structural genomics, MCSG, protein
structure initiative; 2.00A {Saccharomyces cerevisiae}
Length = 254
Score = 28.8 bits (65), Expect = 1.1
Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 13/61 (21%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFDKS------------LYEAHPCLQAEDIANTVEFILSS 206
+++PG+V + + + + + S L E + L + A +
Sbjct: 173 AIAVAPGIVDTDMQVN-IRENVGPSSMSAEQLKMFRGLKENNQLLDSSVPATVYAKLALH 231
Query: 207 P 207
Sbjct: 232 G 232
>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural
genomics, putative 3-oxoacyl-(acyl carrier protei
reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus
anthracis str}
Length = 255
Score = 29.0 bits (66), Expect = 1.1
Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 19/75 (25%)
Query: 135 RQLAARSLRFNLNDKNFCELFPDLVQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCL--- 191
+QL AR + N +I PG VK+ + L D K
Sbjct: 177 KQLGARGITVN---------------AILPGFVKTDMNAELLSDPMMKQYATTISAFNRL 221
Query: 192 -QAEDIANTVEFILS 205
+ EDIA+T F+ S
Sbjct: 222 GEVEDIADTAAFLAS 236
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 28.9 bits (65), Expect = 1.1
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 22/75 (29%)
Query: 135 RQLAARSLRFNLNDKNFCELFPDLVQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCL--- 191
+LA +R N + PGL + + + P
Sbjct: 250 LELAPLQIRVN---------------GVGPGLS---VLVDDMPPAVWEGHRSKVPLYQRD 291
Query: 192 -QAEDIANTVEFILS 205
A ++++ V F+ S
Sbjct: 292 SSAAEVSDVVIFLCS 306
>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus
thermophilus HB8, structural genomics, NPPSFA; HET: NAD;
1.65A {Thermus thermophilus} SCOP: c.2.1.2
Length = 256
Score = 28.6 bits (65), Expect = 1.2
Identities = 11/58 (18%), Positives = 27/58 (46%), Gaps = 11/58 (18%)
Query: 159 VQSISPGLVKSQIFKSSLG-----DKFDKSLYEAHPCL----QAEDIANTVEFILSSP 207
V +++PG + ++ ++ ++ + + H L + E++A V F L+S
Sbjct: 174 VNAVAPGAIATEAVLEAIALSPDPERTRRDWEDLHA-LRRLGKPEEVAEAVLF-LASE 229
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 28.7 bits (65), Expect = 1.2
Identities = 13/78 (16%), Positives = 21/78 (26%), Gaps = 22/78 (28%)
Query: 135 RQLAARSLRFNLNDKNFCELFPDLVQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCL--- 191
+RFN +SPG V + + P +
Sbjct: 180 DFHTKDGVRFN---------------IVSPGTVDTAFHAD-KTQDVRDRISNGIP-MGRF 222
Query: 192 -QAEDIANTVEFILSSPP 208
AE++A F +S
Sbjct: 223 GTAEEMAPAFLF-FASHL 239
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 28.6 bits (65), Expect = 1.2
Identities = 8/52 (15%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Query: 159 VQSISPGLVKSQIFKSSLGD-KFDKSLYEAHPCL----QAEDIANTVEFILS 205
++ PG++++ + + L + + P A +A+ V F+
Sbjct: 180 CNAVCPGMIETPMTQWRLDQPELRDQVLARIP-QKEIGTAAQVADAVMFLAG 230
>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain
dehydrogenase, methotrexate resistance, oxidoreductase;
HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2
PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A*
2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*
Length = 291
Score = 28.9 bits (65), Expect = 1.2
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 22/75 (29%)
Query: 135 RQLAARSLRFNLNDKNFCELFPDLVQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCL--- 191
+LA +R N + PGL + + + P
Sbjct: 213 LELAPLQIRVN---------------GVGPGLS---VLVDDMPPAVWEGHRSKVPLYQRD 254
Query: 192 -QAEDIANTVEFILS 205
A ++++ V F+ S
Sbjct: 255 SSAAEVSDVVIFLCS 269
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, protein structure initiati nysgrc; 2.30A
{Sinorhizobium meliloti}
Length = 271
Score = 28.7 bits (65), Expect = 1.3
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 23/77 (29%)
Query: 135 RQLAARSLRFNLNDKNFCELFPDLVQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCL--- 191
R L R + N + PG + + + GD ++ E
Sbjct: 196 RDLGPRGITVN---------------IVHPGSTDTDMNPA-DGD-HAEAQRERIA-TGSY 237
Query: 192 -QAEDIANTVEFILSSP 207
+ +DIA V + L+ P
Sbjct: 238 GEPQDIAGLVAW-LAGP 253
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 28.7 bits (65), Expect = 1.3
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 10/57 (17%)
Query: 159 VQSISPGLVKSQIFKS-------SLGDKFDKSLYEAHP---CLQAEDIANTVEFILS 205
+ +I PG V + I +S ++ + + L IAN + ++
Sbjct: 180 LNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITLIE 236
>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain
dehydrogenase/reductase family, lyase; 2.00A
{Arthrobacter SP}
Length = 244
Score = 28.6 bits (65), Expect = 1.4
Identities = 7/57 (12%), Positives = 19/57 (33%), Gaps = 10/57 (17%)
Query: 159 VQSISPGLVKS----QIFKSSLGDKFDKSLYEAHPCL----QAEDIANTVEFILSSP 207
+ +I P + + + + P L + +++ + F L+S
Sbjct: 172 LYAIGPNFFNNPTYFPTSDWENNPELRERVDRDVP-LGRLGRPDEMGALITF-LASR 226
>3gem_A Short chain dehydrogenase; structural genomics, APC65077,
oxidoreductase, PSI-2, protein structure initiative;
1.83A {Pseudomonas syringae PV}
Length = 260
Score = 28.7 bits (65), Expect = 1.4
Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 9/60 (15%)
Query: 153 ELFPDL-VQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCL----QAEDIANTVEFILSSP 207
P + V I+P L+ Q + + L AE I ++ ++L S
Sbjct: 187 RFAPLVKVNGIAPALLMFQPKDD---AAYRANALAKSA-LGIEPGAEVIYQSLRYLLDST 242
>4e4y_A Short chain dehydrogenase family protein; structural genomics, the
center for structural genomics of I diseases, csgid,
niaid; 1.80A {Francisella tularensis subsp}
Length = 244
Score = 28.3 bits (64), Expect = 1.5
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 15/61 (24%)
Query: 159 VQSISPGLVKSQIFKSSLG----------DKFDKSLYEAHPCL----QAEDIANTVEFIL 204
V ++ PG V + ++++ + D+ K + P L Q ++IA V F+L
Sbjct: 165 VNTVCPGTVDTDLYRNLIQKYANNVGISFDEAQKQEEKEFP-LNRIAQPQEIAELVIFLL 223
Query: 205 S 205
S
Sbjct: 224 S 224
>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural
genomics, structural genomics CON SGC; 2.40A {Homo
sapiens} SCOP: c.2.1.2
Length = 270
Score = 28.3 bits (64), Expect = 1.6
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 10/56 (17%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFD-----KSLYEAHPCL----QAEDIANTVEFILS 205
V ISPG + + +++ D + A P L Q ++ F+ S
Sbjct: 179 VNCISPGNIWTPLWEELAALMPDPRASIREGMLAQP-LGRMGQPAEVGAAAVFLAS 233
>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase;
protein-NADPH-active site inhibitor complex,
oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A
{Magnaporthe grisea} SCOP: c.2.1.2
Length = 274
Score = 28.3 bits (64), Expect = 1.7
Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 18/65 (27%)
Query: 159 VQSISPGLVKSQIF------------KSSLGDKFDKSLYEAHPCL----QAEDIANTVEF 202
V I+PG VK+ +F K +K D+ L +P L DI V
Sbjct: 195 VNCIAPGGVKTDMFDENSWHYAPGGYKGMPQEKIDEGLANMNP-LKRIGYPADIGRAVSA 253
Query: 203 ILSSP 207
L
Sbjct: 254 -LCQE 257
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}
Length = 280
Score = 28.3 bits (64), Expect = 1.8
Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 8/54 (14%)
Query: 159 VQSISPGLVKSQIFKSSLG---DKFDKSLYEAHPCL----QAEDIANTVEFILS 205
V ++ PG + ++L + + H L + E+IA ++ S
Sbjct: 184 VNALLPGGTDTPANFANLPGAAPETRGFVEGLHA-LKRIARPEEIAEAALYLAS 236
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology,
NEW structural genomics research consortium, nysgrc;
HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Length = 255
Score = 28.3 bits (64), Expect = 1.8
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 26/81 (32%)
Query: 135 RQLAARSLRFNLNDKNFCELFPDLVQSISPGLVKSQIFKSS-----LGDKFDKSLYEAHP 189
+L R +R N S+SPG + + + +F P
Sbjct: 168 AELLPRGIRVN---------------SVSPGFIDTPTKGVAGITEAERAEFKTLGDNITP 212
Query: 190 CL----QAEDIANTVEFILSS 206
+ A+++A V F L+
Sbjct: 213 -MKRNGTADEVARAVLF-LAF 231
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 28.4 bits (64), Expect = 1.8
Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 21/77 (27%)
Query: 135 RQLAARSLRFNLNDKNFCELFPDLVQSISPGLVKSQIFKSSL---GDKFDKSLYEAHPCL 191
+ A +R N ++PG++ SQ + G F + ++ P
Sbjct: 187 LEWACSGIRIN---------------CVAPGVIYSQTAVENYGSWGQSFFEGSFQKIPAK 231
Query: 192 ---QAEDIANTVEFILS 205
E++++ V F+LS
Sbjct: 232 RIGVPEEVSSVVCFLLS 248
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 28.2 bits (64), Expect = 1.9
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 8/54 (14%)
Query: 159 VQSISPGLVKSQIFKSSLGD---KFDKSLYEAHPCL----QAEDIANTVEFILS 205
++ PG VK+ I S + EDIAN + F+ S
Sbjct: 182 AVAVLPGTVKTNIGLGSSKPSELGMRTLTKLMSL-SSRLAEPEDIANVIVFLAS 234
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 28.3 bits (64), Expect = 2.0
Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 12/58 (20%)
Query: 159 VQSISPGLVKSQIFKSSLG-------DKFDKSLYEAHPCL----QAEDIANTVEFILS 205
+ +I+PG + + + ++S+ K + + +P +A +IA V F+LS
Sbjct: 190 INAIAPGAIWTPMVENSMKQLDPENPRKAAEEFIQVNP-SKRYGEAPEIAAVVAFLLS 246
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; HET: NAD; 2.10A {Mycobacterium
abscessus}
Length = 281
Score = 28.3 bits (64), Expect = 2.0
Identities = 14/85 (16%), Positives = 21/85 (24%), Gaps = 23/85 (27%)
Query: 135 RQLAARSLRFN------------LNDKNFCELFPDLVQSISPGLVKSQIFKSSLGDKFDK 182
L + N ND F + PDL + + F
Sbjct: 187 HDLVGYGITVNAVAPGNIETPMTHNDFVFGTMRPDLEKPTLKDVESVFASLHLQYAPF-- 244
Query: 183 SLYEAHPCLQAEDIANTVEFILSSP 207
L+ E++ V F L
Sbjct: 245 --------LKPEEVTRAVLF-LVDE 260
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU
SDR, fungi, oxidoreductase; HET: GOL; 1.48A
{Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A*
3itd_A
Length = 270
Score = 27.9 bits (63), Expect = 2.1
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 17/64 (26%)
Query: 159 VQSISPGLVKSQIFK-----------SSLGDKFDKSLYEAHPCL----QAEDIANTVEFI 203
V +++PG + +F S ++ + A P L +D+AN V F
Sbjct: 192 VNAVAPGGTVTDMFHEVSHHYIPNGTSYTAEQRQQMAAHASP-LHRNGWPQDVANVVGF- 249
Query: 204 LSSP 207
L S
Sbjct: 250 LVSK 253
>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex,
oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi}
SCOP: c.2.1.2 PDB: 1mxf_A*
Length = 276
Score = 28.0 bits (63), Expect = 2.2
Identities = 15/77 (19%), Positives = 26/77 (33%), Gaps = 23/77 (29%)
Query: 135 RQLAARSLRFNLNDKNFCELFPDLVQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCL--- 191
+LA R +R N +++PGL ++ + + P
Sbjct: 198 LELAPRHIRVN---------------AVAPGLSL---LPPAMPQETQEEYRRKVPLGQSE 239
Query: 192 -QAEDIANTVEFILSSP 207
A IA+ + F L S
Sbjct: 240 ASAAQIADAIAF-LVSK 255
>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin
binding, protein transport; 1.40A {Homo sapiens} PDB:
3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A
1kpq_A 1m4p_A 1m4q_A 1s1q_A
Length = 146
Score = 27.6 bits (61), Expect = 2.2
Identities = 17/80 (21%), Positives = 27/80 (33%), Gaps = 8/80 (10%)
Query: 45 GPENTQYEGGMYLGKLVF--PRDFPFKPPSIY-MITPNGRFKTNTRLCLSMSDFHP--DT 99
G Y G Y + +P+ PP + T + KT + + + P
Sbjct: 58 GTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGKIYLPYLHE 117
Query: 100 WNPAWSVSTILTGLLSFMVE 119
W S L GL+ M+
Sbjct: 118 WKHPQSD---LLGLIQVMIV 134
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 27.5 bits (61), Expect = 2.6
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 9/88 (10%)
Query: 50 QYEGGMYLG---KLVFPRDFPFKPPSIYMITPNGRFKTNTRLCLSMSDFHPDTWNPAWSV 106
+ ++ G +LV + P++Y + ++ LCL +DF P
Sbjct: 91 ASDNRIFFGDGTQLVVKPNIQNPEPAVYQLKDPR--SQDSTLCL-FTDFDSQINVPKTME 147
Query: 107 STIL---TGLLSFMVERSPTLGSIEMSD 131
S +L S + G+I S+
Sbjct: 148 SGTFITDKTVLDMKAMDSKSNGAIAWSN 175
>3rgv_A YAE62 TCR A chain; TCR, MHC, MHC class I, immune system; 2.90A {Mus
musculus} PDB: 3c60_A
Length = 200
Score = 27.7 bits (61), Expect = 2.7
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 59 KLVFPRDFPFKPPSIYMITPNGRFKTNTRLCLSMSDFHPDTWNPAWSVSTIL 110
KL + P++Y + + ++ +CL +DF T S +
Sbjct: 104 KLQVVPNIQNPDPAVYQLRDSK--SSDKSVCL-FTDFDSQTNVSQSKDSDVY 152
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase;
ssgcid, decode, niaid, UWPPG, SBRI, structural genomics;
2.45A {Mycobacterium tuberculosis}
Length = 277
Score = 27.5 bits (62), Expect = 2.8
Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 9/56 (16%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFD------KSLYEAHP---CLQAEDIANTVEFILS 205
++ P V + + ++++ A E++A V F+LS
Sbjct: 200 SNTLLPAFVDTPMQQTAMAMFDGALGAGGARSMIARLQGRMAAPEEMAGIVVFLLS 255
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein
structure initiative, PSI-biology; 2.50A {Sinorhizobium
meliloti}
Length = 280
Score = 27.2 bits (61), Expect = 3.7
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCL----QAEDIANTVEFILSSP 207
V + PG+++S + + + K+D + + + EDI N V L+
Sbjct: 209 VFEVRPGIIRSDMTAA-VSGKYDGLIESGLVPMRRWGEPEDIGNIVAG-LAGG 259
>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann
fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus}
SCOP: c.2.1.2 PDB: 2cdh_G
Length = 244
Score = 27.1 bits (61), Expect = 4.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 192 QAEDIANTVEFILSSP 207
Q E++A VEF+ SP
Sbjct: 211 QPENVAGLVEFLALSP 226
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold,
oxoacyl-ACP reductase, NADP binding, fatty AC
biosynthsis, oxidoreductase; HET: NAP; 2.38A
{Synechococcus elongatus} PDB: 4dml_A*
Length = 269
Score = 27.1 bits (61), Expect = 4.6
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 192 QAEDIANTVEFILSSP 207
+A ++A V F+ + P
Sbjct: 235 EAAEVAGVVRFLAADP 250
>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.75A {Mycobacterium smegmatis}
Length = 262
Score = 27.1 bits (61), Expect = 4.6
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCL----QAEDIANTVEFILSSP 207
V +I PG + ++ G+++ S+ + P EDI + F L++
Sbjct: 186 VNAIMPGNIMTEGLLE-NGEEYIASMARSIP-AGALGTPEDIGHLAAF-LATK 235
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein,
NAD(P)-binding rossmann fold, csgid, oxidoreductase;
1.95A {Francisella tularensis subsp}
Length = 247
Score = 26.7 bits (60), Expect = 5.3
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCL---QAEDIANTVEFILSSP 207
V ++PG + + + L D+ + P + +DIA V F L+S
Sbjct: 179 VNVVAPGFIATDM-TDKLTDEQKSFIATKIPSGQIGEPKDIAAAVAF-LASE 228
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic
binding protein, thermophilic proteins, trap- transport;
HET: MSE; 1.90A {Thermotoga maritima}
Length = 327
Score = 26.9 bits (60), Expect = 5.4
Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 10/57 (17%)
Query: 153 ELFPDLVQSISPGLVKSQIFKSS-LGDKFDKSLYEAHPCLQAEDIANTVEFILSSPP 208
+ V+ + G V+ ++F SS LG ++ + E ++ +
Sbjct: 28 LKWAKAVEEKTNGDVRIEVFPSSQLGV--EEDIIEQ---IR----MGAPVGWNTDSA 75
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase;
3-ketoacyl-(acyl-carrier-protein) reductase, FAT
biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia
prowazekii}
Length = 249
Score = 26.7 bits (60), Expect = 5.4
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCL----QAEDIANTVEFILSSP 207
V +++PG +KS + L +K +++ + P L ED+A V F L+S
Sbjct: 181 VNAVAPGFIKSDM-TDKLNEKQREAIVQKIP-LGTYGIPEDVAYAVAF-LASN 230
>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics,
oxidoreductase, S structural genomics center for
infectious disease, ssgcid; 2.09A {Bartonella henselae}
PDB: 3enn_A 3emk_A
Length = 266
Score = 26.7 bits (60), Expect = 5.4
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCL----QAEDIANTVEFILSSP 207
V I+PG +KS + L +K +++ P + E+IA + L+S
Sbjct: 198 VNCIAPGFIKSAM-TDKLNEKQKEAIMAMIP-MKRMGIGEEIAFATVY-LASD 247
>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain
oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE
MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*
Length = 248
Score = 26.3 bits (59), Expect = 6.4
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 159 VQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCL----QAEDIANTVEFILSSP 207
V +++PG +++ + + L ++ + E P L E++AN V F L S
Sbjct: 182 VNAVAPGFIETDM-TAVLSEEIKQKYKEQIP-LGRFGSPEEVANVVLF-LCSE 231
>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl
reductase, oxidoreductase; 1.49A {Mycobacterium
tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A
Length = 247
Score = 26.3 bits (59), Expect = 7.6
Identities = 12/76 (15%), Positives = 30/76 (39%), Gaps = 20/76 (26%)
Query: 135 RQLAARSLRFNLNDKNFCELFPDLVQSISPGLVKSQIFKSSLGDKFDKSLYEAHPCL--- 191
R+L+ ++ N ++PG + + + ++ L ++ + + P
Sbjct: 169 RELSKANVTAN---------------VVAPGYIDTDMTRA-LDERIQQGALQFIPAKRVG 212
Query: 192 QAEDIANTVEFILSSP 207
++A V F L+S
Sbjct: 213 TPAEVAGVVSF-LASE 227
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein,
trap, sugar transport; HET: SLB; 1.05A {Haemophilus
influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A*
2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Length = 312
Score = 26.5 bits (59), Expect = 8.1
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Query: 153 ELFPDLVQSISPGLVKSQIFKSS-LGDKFDKSLYEAHPCLQAEDIANTVEFILSS 206
E+F V+ S G ++ ++ SS LGD D+++ + L+ +++F +
Sbjct: 22 EMFAKEVKEKSQGKIEISLYPSSQLGD--DRAMLKQ---LK----DGSLDFTFAE 67
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 26.4 bits (59), Expect = 8.5
Identities = 7/16 (43%), Positives = 9/16 (56%), Gaps = 1/16 (6%)
Query: 192 QAEDIANTVEFILSSP 207
E++AN F LSS
Sbjct: 253 TPEEVANLACF-LSSD 267
>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural
genomics, southea collaboratory for structural genomics,
secsg; 1.91A {Thermus thermophilus HB8}
Length = 245
Score = 25.9 bits (58), Expect = 8.9
Identities = 6/16 (37%), Positives = 9/16 (56%), Gaps = 1/16 (6%)
Query: 192 QAEDIANTVEFILSSP 207
+ E++A V F L S
Sbjct: 212 RPEEVAEAVAF-LVSE 226
>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl
carrier protein) reductase, short-chain
dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}
Length = 246
Score = 25.9 bits (58), Expect = 9.2
Identities = 8/16 (50%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
Query: 192 QAEDIANTVEFILSSP 207
+A+DIAN V F +S
Sbjct: 214 EAQDIANAVTF-FASD 228
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.420
Gapped
Lambda K H
0.267 0.0837 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,247,937
Number of extensions: 182879
Number of successful extensions: 621
Number of sequences better than 10.0: 1
Number of HSP's gapped: 534
Number of HSP's successfully gapped: 154
Length of query: 214
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 124
Effective length of database: 4,188,903
Effective search space: 519423972
Effective search space used: 519423972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (24.8 bits)